Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731870 | XP_013454069.1 | 71.233 | 146 | 7 | 1 | 58 | 168 | 23 | 168 | 3.66e-59 | 197 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731870 | sp|O82161|PHI1_TOBAC | 47.561 | 164 | 44 | 5 | 44 | 168 | 6 | 166 | 4.42e-34 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731870 | B7FIZ9 | 71.233 | 146 | 7 | 1 | 58 | 168 | 23 | 168 | 1.75e-59 | 197 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0731870 | Msa0772920 | 0.815725 | 7.980383e-52 | -8.615850e-47 |
| Msa0731870 | Msa0772980 | 0.828297 | 9.722304e-55 | -8.615850e-47 |
| Msa0731870 | Msa0810190 | 0.849796 | 2.569517e-60 | -8.615850e-47 |
| Msa0731870 | Msa0810250 | 0.806269 | 8.929314e-50 | -8.615850e-47 |
| Msa0731870 | Msa0853250 | 0.841912 | 3.564163e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731870 | MtrunA17_Chr5g0426441 | 71.233 | 146 | 7 | 1 | 58 | 168 | 356 | 501 | 7.59e-59 | 197 |
| Msa0731870 | MtrunA17_Chr5g0426441 | 71.528 | 144 | 6 | 1 | 60 | 168 | 668 | 811 | 1.68e-58 | 197 |
| Msa0731870 | MtrunA17_Chr5g0426441 | 70.548 | 146 | 8 | 1 | 58 | 168 | 47 | 192 | 4.34e-58 | 196 |
| Msa0731870 | MtrunA17_Chr3g0116001 | 57.447 | 141 | 25 | 2 | 60 | 168 | 27 | 164 | 5.88e-47 | 155 |
| Msa0731870 | MtrunA17_Chr3g0116011 | 55.319 | 141 | 28 | 2 | 60 | 168 | 27 | 164 | 4.99e-45 | 150 |
| Msa0731870 | MtrunA17_Chr3g0115951 | 67.073 | 82 | 27 | 0 | 87 | 168 | 88 | 169 | 1.69e-32 | 118 |
| Msa0731870 | MtrunA17_Chr4g0050321 | 48.000 | 100 | 43 | 2 | 80 | 177 | 75 | 167 | 5.70e-20 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731870 | AT4G08950.1 | 59.649 | 114 | 40 | 2 | 74 | 186 | 74 | 182 | 6.56e-34 | 122 |
| Msa0731870 | AT1G35140.1 | 44.615 | 130 | 37 | 1 | 71 | 165 | 32 | 161 | 5.45e-27 | 104 |
| Msa0731870 | AT5G09440.1 | 51.087 | 92 | 36 | 3 | 79 | 168 | 64 | 148 | 5.88e-18 | 79.7 |
| Msa0731870 | AT5G64260.1 | 47.778 | 90 | 39 | 2 | 80 | 168 | 77 | 159 | 2.92e-16 | 75.5 |
Find 43 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATGCGAGTTTAAGAATT+TGG | 0.184159 | 5_1:-43472833 | None:intergenic |
| TGCAAGTTTCCGTTGGAATT+TGG | 0.198393 | 5_1:+43470507 | Msa0731870:CDS |
| CTTGATGAGAATTACTCTTT+AGG | 0.255316 | 5_1:+43472792 | Msa0731870:CDS |
| CCCAGGCTCTAAGAAATTCC+TGG | 0.380056 | 5_1:-43472967 | None:intergenic |
| GCCAGGAATTTCTTAGAGCC+TGG | 0.395271 | 5_1:+43472966 | Msa0731870:CDS |
| CAGTGAGAAGAGGGCCTTTG+TGG | 0.407467 | 5_1:-43472554 | None:intergenic |
| TCGGTGCCGGAAGTTGTTAC+AGG | 0.429626 | 5_1:+43470452 | Msa0731870:CDS |
| CCGTCGCCTGTAACAACTTC+CGG | 0.440508 | 5_1:-43470458 | None:intergenic |
| CTAACACATCAGCAGCTGTT+AGG | 0.451358 | 5_1:-43472887 | None:intergenic |
| TTCTTCTCAGTGGCGGAGCC+AGG | 0.454563 | 5_1:+43472949 | Msa0731870:CDS |
| GATGGTTATGACGGTGGAAA+AGG | 0.455692 | 5_1:+43470404 | Msa0731870:CDS |
| GGCGACGGTGAGGTTGTTAC+AGG | 0.456457 | 5_1:+43470473 | Msa0731870:CDS |
| TTGAAATTTAAGTTGTTGAT+CGG | 0.465172 | 5_1:-43472529 | None:intergenic |
| ATTCTTAAACTCGCATCAAA+AGG | 0.483182 | 5_1:+43472837 | Msa0731870:CDS |
| AGCTGTTAGGACAACGTTGA+TGG | 0.491013 | 5_1:-43472874 | None:intergenic |
| CGCCACTGAGAAGAACCATA+TGG | 0.492157 | 5_1:-43472941 | None:intergenic |
| GAGTACCTAGTGAGAGAGCT+AGG | 0.494212 | 5_1:-43472764 | None:intergenic |
| AAGTAGGTGTGGAACCCATA+TGG | 0.508367 | 5_1:+43472926 | Msa0731870:CDS |
| AATTAAATGCAAGTTTCCGT+TGG | 0.510324 | 5_1:+43470500 | Msa0731870:CDS |
| CCAGGAATTTCTTAGAGCCT+GGG | 0.510432 | 5_1:+43472967 | Msa0731870:CDS |
| AAGTTGGTGAACGTCGGTGC+CGG | 0.515463 | 5_1:+43470439 | Msa0731870:CDS |
| ATTTCTTGTTGCTAGTGAGT+TGG | 0.535082 | 5_1:-43472734 | None:intergenic |
| CACAAAGGCCCTCTTCTCAC+TGG | 0.545259 | 5_1:+43472555 | Msa0731870:CDS |
| GCTGCTGATGTGTTAGTTGA+CGG | 0.552796 | 5_1:+43472894 | Msa0731870:CDS |
| GCCACTGAGAAGAACCATAT+GGG | 0.563231 | 5_1:-43472940 | None:intergenic |
| GTTAACCTAGCTCTCTCACT+AGG | 0.568709 | 5_1:+43472759 | Msa0731870:CDS |
| TTCAGTTGATTTCCACCATG+TGG | 0.572317 | 5_1:-43472703 | None:intergenic |
| AAGGACGACGGTGATGAAGT+TGG | 0.581755 | 5_1:+43470423 | Msa0731870:CDS |
| TTCCACCATGTGGCAACTGA+TGG | 0.585265 | 5_1:-43472693 | None:intergenic |
| ACCCATATGGTTCTTCTCAG+TGG | 0.607965 | 5_1:+43472939 | Msa0731870:CDS |
| CACAACCATCAGTTGCCACA+TGG | 0.620147 | 5_1:+43472688 | Msa0731870:CDS |
| CCGGAAGTTGTTACAGGCGA+CGG | 0.621892 | 5_1:+43470458 | Msa0731870:CDS |
| CTTAAATTTCAATACCACAA+AGG | 0.623830 | 5_1:+43472540 | Msa0731870:CDS |
| GGCAACTGATGGTTGTGATG+TGG | 0.638694 | 5_1:-43472682 | None:intergenic |
| GGTGAAGAAAGCAATTTCAG+TGG | 0.639967 | 5_1:+43470546 | Msa0731870:CDS |
| AAAACAAAACCAAATTCCAA+CGG | 0.640033 | 5_1:-43470516 | None:intergenic |
| AACCATCAGTTGCCACATGG+TGG | 0.644164 | 5_1:+43472691 | Msa0731870:CDS |
| AACTATGATGGTTATGACGG+TGG | 0.656276 | 5_1:+43470398 | None:intergenic |
| AGTTGTTACAGGCGACGGTG+AGG | 0.660186 | 5_1:+43470463 | Msa0731870:CDS |
| CATATGGTTCTTCTCAGTGG+CGG | 0.667872 | 5_1:+43472942 | Msa0731870:CDS |
| GTGAACTATGATGGTTATGA+CGG | 0.670012 | 5_1:+43470395 | None:intergenic |
| GTGATGAAGTTGGTGAACGT+CGG | 0.727132 | 5_1:+43470433 | Msa0731870:CDS |
| ATGACGGTGGAAAAGGACGA+CGG | 0.760396 | 5_1:+43470411 | Msa0731870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAACAGATTTTATAATTTTA+GGG | - | chr5_1:43471781-43471800 | None:intergenic | 10.0% |
| !!! | TTAACAGATTTTATAATTTT+AGG | - | chr5_1:43471782-43471801 | None:intergenic | 10.0% |
| !! | ATATTGAGCTAATATTAAAT+TGG | + | chr5_1:43470814-43470833 | Msa0731870:intron | 15.0% |
| !! | ATTATCAGTAATATCTATAT+TGG | + | chr5_1:43471200-43471219 | Msa0731870:intron | 15.0% |
| !!! | CTTTTTATATAGTATTTTGA+TGG | - | chr5_1:43471235-43471254 | None:intergenic | 15.0% |
| !! | AATTATACATAATTATCTGA+AGG | + | chr5_1:43471543-43471562 | Msa0731870:intron | 15.0% |
| !! | AATATTAGCTCAATATGTAT+TGG | - | chr5_1:43470810-43470829 | None:intergenic | 20.0% |
| !! | AAAGATTATAGACTATTATG+TGG | + | chr5_1:43471114-43471133 | Msa0731870:intron | 20.0% |
| !! | AAGATTATAGACTATTATGT+GGG | + | chr5_1:43471115-43471134 | Msa0731870:intron | 20.0% |
| !!! | TTTATATAGTATTTTGATGG+CGG | - | chr5_1:43471232-43471251 | None:intergenic | 20.0% |
| !!! | ATTTTTATCTTCACTAGTTT+TGG | - | chr5_1:43471700-43471719 | None:intergenic | 20.0% |
| !! | AATTAACGTGTAAAATAGAA+AGG | - | chr5_1:43472300-43472319 | None:intergenic | 20.0% |
| !!! | TTGAAATTTAAGTTGTTGAT+CGG | - | chr5_1:43472532-43472551 | None:intergenic | 20.0% |
| ! | AAAACAAAACCAAATTCCAA+CGG | - | chr5_1:43470519-43470538 | None:intergenic | 25.0% |
| !! | AGAAATTGAAGTGTCAAATT+AGG | - | chr5_1:43470670-43470689 | None:intergenic | 25.0% |
| !! | TTTTGATAGAAGATTGAAAG+TGG | + | chr5_1:43470690-43470709 | Msa0731870:intron | 25.0% |
| ! | GAAGAATAATTTACCAACAT+AGG | + | chr5_1:43470722-43470741 | Msa0731870:intron | 25.0% |
| ! | TCAATACAGATTTGTCAATA+GGG | - | chr5_1:43470873-43470892 | None:intergenic | 25.0% |
| ! | ATCAATACAGATTTGTCAAT+AGG | - | chr5_1:43470874-43470893 | None:intergenic | 25.0% |
| !! | ATTGACAAATCTGTATTGAT+TGG | + | chr5_1:43470874-43470893 | Msa0731870:intron | 25.0% |
| ! | TAAACAGACTAACTATTCTA+AGG | - | chr5_1:43470993-43471012 | None:intergenic | 25.0% |
| ! | TAATGTACTTATGTTTAACG+AGG | - | chr5_1:43471047-43471066 | None:intergenic | 25.0% |
| !!! | TTATATAGTATTTTGATGGC+GGG | - | chr5_1:43471231-43471250 | None:intergenic | 25.0% |
| ! | ATTATTCTCGTAGTTATAAG+TGG | + | chr5_1:43471272-43471291 | Msa0731870:intron | 25.0% |
| !! | ACTTTATAATCATTTTGTGG+CGG | - | chr5_1:43471377-43471396 | None:intergenic | 25.0% |
| !! | TCGACTTTATAATCATTTTG+TGG | - | chr5_1:43471380-43471399 | None:intergenic | 25.0% |
| ! | ATGATTATAAAGTCGATTGA+TGG | + | chr5_1:43471384-43471403 | Msa0731870:intron | 25.0% |
| ! | CCAATTTAATATTGAGTCTT+TGG | - | chr5_1:43471469-43471488 | None:intergenic | 25.0% |
| ! | CCAAAGACTCAATATTAAAT+TGG | + | chr5_1:43471466-43471485 | Msa0731870:intron | 25.0% |
| !!! | TTTTGTTTATATGGAACACA+AGG | - | chr5_1:43471511-43471530 | None:intergenic | 25.0% |
| ! | TTGTGTTCCATATAAACAAA+AGG | + | chr5_1:43471510-43471529 | Msa0731870:intron | 25.0% |
| !!! | CTTTTGTCCTTTTGTTTATA+TGG | - | chr5_1:43471520-43471539 | None:intergenic | 25.0% |
| ! | CATATAAACAAAAGGACAAA+AGG | + | chr5_1:43471518-43471537 | Msa0731870:intron | 25.0% |
| ! | CTTTATATACTCTCTATTTG+TGG | - | chr5_1:43471670-43471689 | None:intergenic | 25.0% |
| ! | TAGTTGAAGTCAAATTATGT+AGG | - | chr5_1:43472268-43472287 | None:intergenic | 25.0% |
| ! | TAGAACAAGTATGAAGTAAA+AGG | - | chr5_1:43472400-43472419 | None:intergenic | 25.0% |
| !! | TAACTTAAAAGATGCCATTT+GGG | - | chr5_1:43472436-43472455 | None:intergenic | 25.0% |
| ! | TTAACTTAAAAGATGCCATT+TGG | - | chr5_1:43472437-43472456 | None:intergenic | 25.0% |
| ! | TAGTGAAATTGTGAGAAAAA+GGG | - | chr5_1:43472472-43472491 | None:intergenic | 25.0% |
| ! | CTTAAATTTCAATACCACAA+AGG | + | chr5_1:43472540-43472559 | Msa0731870:CDS | 25.0% |
| !! | TGAATTTTCCATATCAAATG+AGG | - | chr5_1:43472596-43472615 | None:intergenic | 25.0% |
| !!! | TTGTTTTTTGGAAGAAGAAA+GGG | - | chr5_1:43472658-43472677 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTTGGAAGAAGAA+AGG | - | chr5_1:43472659-43472678 | None:intergenic | 25.0% |
| AATTAAATGCAAGTTTCCGT+TGG | + | chr5_1:43470500-43470519 | Msa0731870:CDS | 30.0% | |
| !!! | TTTGGTTTTGTTTTGCTCTT+AGG | + | chr5_1:43470525-43470544 | Msa0731870:CDS | 30.0% |
| ! | TGTAGAAAGTAATTTTCGCT+TGG | + | chr5_1:43470569-43470588 | Msa0731870:intron | 30.0% |
| ! | GTAGAAAGTAATTTTCGCTT+GGG | + | chr5_1:43470570-43470589 | Msa0731870:intron | 30.0% |
| !! | TAAGGAACTTTTTCCTATGT+TGG | - | chr5_1:43470738-43470757 | None:intergenic | 30.0% |
| ATATACTCTACTGGTAGATA+AGG | - | chr5_1:43470756-43470775 | None:intergenic | 30.0% | |
| !!! | AAATTGGCTTTTAATGCTAG+TGG | + | chr5_1:43470830-43470849 | Msa0731870:intron | 30.0% |
| !!! | AATTGGCTTTTAATGCTAGT+GGG | + | chr5_1:43470831-43470850 | Msa0731870:intron | 30.0% |
| ! | TAGTCCAGCTTTAATATAAG+TGG | + | chr5_1:43471082-43471101 | Msa0731870:intron | 30.0% |
| ! | AGTCCAGCTTTAATATAAGT+GGG | + | chr5_1:43471083-43471102 | Msa0731870:intron | 30.0% |
| TATCCCACTTATATTAAAGC+TGG | - | chr5_1:43471089-43471108 | None:intergenic | 30.0% | |
| ! | TTTCTCCTGTTACTTCATTT+AGG | - | chr5_1:43471443-43471462 | None:intergenic | 30.0% |
| ! | CAATGTTAAGATAGGTTTTG+AGG | - | chr5_1:43471595-43471614 | None:intergenic | 30.0% |
| ATTGTTACGCTCTTCAATAA+TGG | + | chr5_1:43472056-43472075 | Msa0731870:intron | 30.0% | |
| ATCTATGAATTCATGCAAAC+TGG | + | chr5_1:43472189-43472208 | Msa0731870:intron | 30.0% | |
| TGAAGTCAAATTATGTAGGA+GGG | - | chr5_1:43472264-43472283 | None:intergenic | 30.0% | |
| TTGAAGTCAAATTATGTAGG+AGG | - | chr5_1:43472265-43472284 | None:intergenic | 30.0% | |
| ! | AACTTAAAAGATGCCATTTG+GGG | - | chr5_1:43472435-43472454 | None:intergenic | 30.0% |
| GTAGTGAAATTGTGAGAAAA+AGG | - | chr5_1:43472473-43472492 | None:intergenic | 30.0% | |
| TCAATCAACCTCATTTGATA+TGG | + | chr5_1:43472585-43472604 | Msa0731870:intron | 30.0% | |
| GGTTATGAAATCAGTTATGA+TGG | - | chr5_1:43472634-43472653 | None:intergenic | 30.0% | |
| CTTGATGAGAATTACTCTTT+AGG | + | chr5_1:43472792-43472811 | Msa0731870:CDS | 30.0% | |
| TTGATGCGAGTTTAAGAATT+TGG | - | chr5_1:43472836-43472855 | None:intergenic | 30.0% | |
| ATTCTTAAACTCGCATCAAA+AGG | + | chr5_1:43472837-43472856 | Msa0731870:CDS | 30.0% | |
| GTCAAATTAGGAAGTGGTTA+TGG | - | chr5_1:43470658-43470677 | None:intergenic | 35.0% | |
| ! | TGAAGTGTCAAATTAGGAAG+TGG | - | chr5_1:43470664-43470683 | None:intergenic | 35.0% |
| CTATGAGCAATATACTCTAC+TGG | - | chr5_1:43470765-43470784 | None:intergenic | 35.0% | |
| ! | CAAAGTGGTTTAAGGTCAAA+GGG | - | chr5_1:43471307-43471326 | None:intergenic | 35.0% |
| ! | ACAAAGTGGTTTAAGGTCAA+AGG | - | chr5_1:43471308-43471327 | None:intergenic | 35.0% |
| TACTCCACAAATCATGCTAA+GGG | + | chr5_1:43471407-43471426 | Msa0731870:intron | 35.0% | |
| GAGCTCATCAATGTTAAGAT+AGG | - | chr5_1:43471603-43471622 | None:intergenic | 35.0% | |
| TGTTTACGTGTGTTGAGTTT+GGG | - | chr5_1:43471625-43471644 | None:intergenic | 35.0% | |
| ATGTTTACGTGTGTTGAGTT+TGG | - | chr5_1:43471626-43471645 | None:intergenic | 35.0% | |
| ! | AATAATGGAGAATGGACACT+AGG | + | chr5_1:43472071-43472090 | Msa0731870:intron | 35.0% |
| ! | ATAATGGAGAATGGACACTA+GGG | + | chr5_1:43472072-43472091 | Msa0731870:intron | 35.0% |
| AACTGTGTATCGTTTGTACA+AGG | - | chr5_1:43472103-43472122 | None:intergenic | 35.0% | |
| ! | TAGGTGGAAGTGTATTGAAA+AGG | - | chr5_1:43472323-43472342 | None:intergenic | 35.0% |
| ATGGGGTTGTAGGTATATAT+AGG | - | chr5_1:43472342-43472361 | None:intergenic | 35.0% | |
| !! | AGGTGATGGAAATGTAAGAT+GGG | - | chr5_1:43472360-43472379 | None:intergenic | 35.0% |
| AGGAATGTTGAAATGTTGTG+AGG | - | chr5_1:43472380-43472399 | None:intergenic | 35.0% | |
| ATCTCAATACATACCCCAAA+TGG | + | chr5_1:43472419-43472438 | Msa0731870:intron | 35.0% | |
| ! | AGATTTTACCAGTGAGAAGA+GGG | - | chr5_1:43472566-43472585 | None:intergenic | 35.0% |
| ATCAGTTATGATGGCTCTTT+GGG | - | chr5_1:43472625-43472644 | None:intergenic | 35.0% | |
| AATCAGTTATGATGGCTCTT+TGG | - | chr5_1:43472626-43472645 | None:intergenic | 35.0% | |
| !!! | TTTTTTGGAAGAAGAAAGGG+AGG | - | chr5_1:43472655-43472674 | None:intergenic | 35.0% |
| !!! | TGATGTGGCTGTTTGTTTTT+TGG | - | chr5_1:43472670-43472689 | None:intergenic | 35.0% |
| ATTTCTTGTTGCTAGTGAGT+TGG | - | chr5_1:43472737-43472756 | None:intergenic | 35.0% | |
| !!! | TTGACGGATTTTGTTCAAGT+AGG | + | chr5_1:43472910-43472929 | Msa0731870:CDS | 35.0% |
| ! | TTGCGATTAAATTTTTGCCC+AGG | - | chr5_1:43472987-43473006 | None:intergenic | 35.0% |
| TGCAAGTTTCCGTTGGAATT+TGG | + | chr5_1:43470507-43470526 | Msa0731870:CDS | 40.0% | |
| GGTGAAGAAAGCAATTTCAG+TGG | + | chr5_1:43470546-43470565 | Msa0731870:CDS | 40.0% | |
| ! | AAGTAATTTTCGCTTGGGCT+TGG | + | chr5_1:43470575-43470594 | Msa0731870:intron | 40.0% |
| TAATGCTAGTGGGAGATTGT+TGG | + | chr5_1:43470841-43470860 | Msa0731870:intron | 40.0% | |
| CACATCTCACATATCATCGA+TGG | + | chr5_1:43471150-43471169 | Msa0731870:intron | 40.0% | |
| CTAGGCTACAAAGTGGTTTA+AGG | - | chr5_1:43471315-43471334 | None:intergenic | 40.0% | |
| AGTACTTGACTCCTACATCT+AGG | - | chr5_1:43471333-43471352 | None:intergenic | 40.0% | |
| GTACTCCACAAATCATGCTA+AGG | + | chr5_1:43471406-43471425 | Msa0731870:intron | 40.0% | |
| ATGTCCCTTAGCATGATTTG+TGG | - | chr5_1:43471414-43471433 | None:intergenic | 40.0% | |
| AGTGGCCTAAATGAAGTAAC+AGG | + | chr5_1:43471435-43471454 | Msa0731870:intron | 40.0% | |
| ! | CGCTCTTCAATAATGGAGAA+TGG | + | chr5_1:43472063-43472082 | Msa0731870:intron | 40.0% |
| TAATGGAGAATGGACACTAG+GGG | + | chr5_1:43472073-43472092 | Msa0731870:intron | 40.0% | |
| ATAACAACGCGTAATCTAGC+TGG | + | chr5_1:43472221-43472240 | Msa0731870:intron | 40.0% | |
| AAATTATGTAGGAGGGTGAG+TGG | - | chr5_1:43472257-43472276 | None:intergenic | 40.0% | |
| GGGTTGTAGGTATATATAGG+TGG | - | chr5_1:43472339-43472358 | None:intergenic | 40.0% | |
| GAAATGTAAGATGGGGTTGT+AGG | - | chr5_1:43472352-43472371 | None:intergenic | 40.0% | |
| !! | GGTGATGGAAATGTAAGATG+GGG | - | chr5_1:43472359-43472378 | None:intergenic | 40.0% |
| !! | GAGGTGATGGAAATGTAAGA+TGG | - | chr5_1:43472361-43472380 | None:intergenic | 40.0% |
| GTTGAAATGTTGTGAGGTGA+TGG | - | chr5_1:43472374-43472393 | None:intergenic | 40.0% | |
| ! | GAGATTTTACCAGTGAGAAG+AGG | - | chr5_1:43472567-43472586 | None:intergenic | 40.0% |
| ! | TTCAGTTGATTTCCACCATG+TGG | - | chr5_1:43472706-43472725 | None:intergenic | 40.0% |
| ! | GGATTTTGTTCAAGTAGGTG+TGG | + | chr5_1:43472915-43472934 | Msa0731870:CDS | 40.0% |
| GATGGTTATGACGGTGGAAA+AGG | + | chr5_1:43470404-43470423 | Msa0731870:CDS | 45.0% | |
| !! | GTGATGAAGTTGGTGAACGT+CGG | + | chr5_1:43470433-43470452 | Msa0731870:CDS | 45.0% |
| CCTACATCTAGGCTACAAAG+TGG | - | chr5_1:43471322-43471341 | None:intergenic | 45.0% | |
| CCACTTTGTAGCCTAGATGT+AGG | + | chr5_1:43471319-43471338 | Msa0731870:intron | 45.0% | |
| ATCATGCTAAGGGACATGAG+TGG | + | chr5_1:43471417-43471436 | Msa0731870:intron | 45.0% | |
| ! | GTTATGATGGCTCTTTGGGA+TGG | - | chr5_1:43472621-43472640 | None:intergenic | 45.0% |
| ! | GTTAACCTAGCTCTCTCACT+AGG | + | chr5_1:43472759-43472778 | Msa0731870:CDS | 45.0% |
| AGCTGTTAGGACAACGTTGA+TGG | - | chr5_1:43472877-43472896 | None:intergenic | 45.0% | |
| CTAACACATCAGCAGCTGTT+AGG | - | chr5_1:43472890-43472909 | None:intergenic | 45.0% | |
| GCTGCTGATGTGTTAGTTGA+CGG | + | chr5_1:43472894-43472913 | Msa0731870:CDS | 45.0% | |
| AAGTAGGTGTGGAACCCATA+TGG | + | chr5_1:43472926-43472945 | Msa0731870:CDS | 45.0% | |
| ACCCATATGGTTCTTCTCAG+TGG | + | chr5_1:43472939-43472958 | Msa0731870:CDS | 45.0% | |
| GCCACTGAGAAGAACCATAT+GGG | - | chr5_1:43472943-43472962 | None:intergenic | 45.0% | |
| CATATGGTTCTTCTCAGTGG+CGG | + | chr5_1:43472942-43472961 | Msa0731870:CDS | 45.0% | |
| CCAGGAATTTCTTAGAGCCT+GGG | + | chr5_1:43472967-43472986 | Msa0731870:CDS | 45.0% | |
| ATGACGGTGGAAAAGGACGA+CGG | + | chr5_1:43470411-43470430 | Msa0731870:CDS | 50.0% | |
| AAGGACGACGGTGATGAAGT+TGG | + | chr5_1:43470423-43470442 | Msa0731870:CDS | 50.0% | |
| ! | TTCGCTTGGGCTTGGTTTAG+TGG | + | chr5_1:43470583-43470602 | Msa0731870:intron | 50.0% |
| ! | TCGCTTGGGCTTGGTTTAGT+GGG | + | chr5_1:43470584-43470603 | Msa0731870:intron | 50.0% |
| GGCAACTGATGGTTGTGATG+TGG | - | chr5_1:43472685-43472704 | None:intergenic | 50.0% | |
| CACAACCATCAGTTGCCACA+TGG | + | chr5_1:43472688-43472707 | Msa0731870:CDS | 50.0% | |
| AACCATCAGTTGCCACATGG+TGG | + | chr5_1:43472691-43472710 | Msa0731870:CDS | 50.0% | |
| TTCCACCATGTGGCAACTGA+TGG | - | chr5_1:43472696-43472715 | None:intergenic | 50.0% | |
| GAGTACCTAGTGAGAGAGCT+AGG | - | chr5_1:43472767-43472786 | None:intergenic | 50.0% | |
| CGCCACTGAGAAGAACCATA+TGG | - | chr5_1:43472944-43472963 | None:intergenic | 50.0% | |
| GCCAGGAATTTCTTAGAGCC+TGG | + | chr5_1:43472966-43472985 | Msa0731870:CDS | 50.0% | |
| !! | CCCAGGCTCTAAGAAATTCC+TGG | - | chr5_1:43472970-43472989 | None:intergenic | 50.0% |
| !! | AAGTTGGTGAACGTCGGTGC+CGG | + | chr5_1:43470439-43470458 | Msa0731870:CDS | 55.0% |
| !! | TCGGTGCCGGAAGTTGTTAC+AGG | + | chr5_1:43470452-43470471 | Msa0731870:CDS | 55.0% |
| CCGTCGCCTGTAACAACTTC+CGG | - | chr5_1:43470461-43470480 | None:intergenic | 55.0% | |
| CCGGAAGTTGTTACAGGCGA+CGG | + | chr5_1:43470458-43470477 | Msa0731870:CDS | 55.0% | |
| AGTTGTTACAGGCGACGGTG+AGG | + | chr5_1:43470463-43470482 | Msa0731870:CDS | 55.0% | |
| ! | TTGGGCTTGGTTTAGTGGGC+CGG | + | chr5_1:43470588-43470607 | Msa0731870:intron | 55.0% |
| ! | TTGGTTTAGTGGGCCGGATC+CGG | + | chr5_1:43470594-43470613 | Msa0731870:intron | 55.0% |
| ATCCGGTCTGGGCTTATGCA+TGG | + | chr5_1:43470611-43470630 | Msa0731870:intron | 55.0% | |
| CACCATGCATAAGCCCAGAC+CGG | - | chr5_1:43470616-43470635 | None:intergenic | 55.0% | |
| CAGTGAGAAGAGGGCCTTTG+TGG | - | chr5_1:43472557-43472576 | None:intergenic | 55.0% | |
| CACAAAGGCCCTCTTCTCAC+TGG | + | chr5_1:43472555-43472574 | Msa0731870:CDS | 55.0% | |
| GGCGACGGTGAGGTTGTTAC+AGG | + | chr5_1:43470473-43470492 | Msa0731870:CDS | 60.0% | |
| GCATAAGCCCAGACCGGATC+CGG | - | chr5_1:43470610-43470629 | None:intergenic | 60.0% | |
| ! | TTCTTCTCAGTGGCGGAGCC+AGG | + | chr5_1:43472949-43472968 | Msa0731870:CDS | 60.0% |
| ! | TTAGTGGGCCGGATCCGGTC+TGG | + | chr5_1:43470599-43470618 | Msa0731870:intron | 65.0% |
| ! | TAGTGGGCCGGATCCGGTCT+GGG | + | chr5_1:43470600-43470619 | Msa0731870:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 43470402 | 43473016 | 43470402 | ID=Msa0731870;Name=Msa0731870 |
| chr5_1 | mRNA | 43470402 | 43473016 | 43470402 | ID=Msa0731870-mRNA-1;Parent=Msa0731870;Name=Msa0731870-mRNA-1;_AED=0.55;_eAED=0.55;_QI=0|0|0|0.66|1|1|3|0|191 |
| chr5_1 | exon | 43470402 | 43470576 | 43470402 | ID=Msa0731870-mRNA-1:exon:12409;Parent=Msa0731870-mRNA-1 |
| chr5_1 | exon | 43472511 | 43472576 | 43472511 | ID=Msa0731870-mRNA-1:exon:12410;Parent=Msa0731870-mRNA-1 |
| chr5_1 | exon | 43472682 | 43473016 | 43472682 | ID=Msa0731870-mRNA-1:exon:12411;Parent=Msa0731870-mRNA-1 |
| chr5_1 | CDS | 43470402 | 43470576 | 43470402 | ID=Msa0731870-mRNA-1:cds;Parent=Msa0731870-mRNA-1 |
| chr5_1 | CDS | 43472511 | 43472576 | 43472511 | ID=Msa0731870-mRNA-1:cds;Parent=Msa0731870-mRNA-1 |
| chr5_1 | CDS | 43472682 | 43473016 | 43472682 | ID=Msa0731870-mRNA-1:cds;Parent=Msa0731870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
