Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731980 | XP_013454048.2 | 96.190 | 315 | 12 | 0 | 1 | 315 | 25 | 339 | 0.0 | 622 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731980 | sp|O82161|PHI1_TOBAC | 74.679 | 312 | 69 | 5 | 9 | 315 | 7 | 313 | 2.96e-163 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731980 | G7KBB9 | 96.190 | 315 | 12 | 0 | 1 | 315 | 1 | 315 | 0.0 | 621 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0731980 | Msa0731990 | 0.874152 | 8.441814e-68 | -8.615850e-47 |
| Msa0731980 | Msa0732010 | 0.894288 | 2.838540e-75 | -8.615850e-47 |
| Msa0731980 | Msa0853250 | 0.827858 | 1.240301e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731980 | MtrunA17_Chr5g0426441 | 95.873 | 315 | 13 | 0 | 1 | 315 | 25 | 339 | 0.0 | 619 |
| Msa0731980 | MtrunA17_Chr5g0426441 | 95.161 | 310 | 15 | 0 | 6 | 315 | 339 | 648 | 0.0 | 607 |
| Msa0731980 | MtrunA17_Chr5g0426441 | 94.855 | 311 | 15 | 1 | 6 | 315 | 648 | 958 | 0.0 | 603 |
| Msa0731980 | MtrunA17_Chr3g0116001 | 78.912 | 294 | 49 | 3 | 22 | 315 | 24 | 304 | 3.90e-171 | 476 |
| Msa0731980 | MtrunA17_Chr3g0116011 | 78.571 | 294 | 50 | 4 | 22 | 315 | 24 | 304 | 1.42e-169 | 473 |
| Msa0731980 | MtrunA17_Chr3g0115951 | 70.533 | 319 | 88 | 5 | 1 | 315 | 1 | 317 | 6.51e-154 | 433 |
| Msa0731980 | MtrunA17_Chr4g0050321 | 61.404 | 285 | 96 | 3 | 31 | 315 | 30 | 300 | 3.71e-122 | 352 |
| Msa0731980 | MtrunA17_Chr2g0279311 | 53.355 | 313 | 130 | 6 | 4 | 315 | 7 | 304 | 1.81e-119 | 345 |
| Msa0731980 | MtrunA17_Chr4g0018171 | 35.473 | 296 | 169 | 8 | 16 | 300 | 45 | 329 | 8.97e-48 | 163 |
| Msa0731980 | MtrunA17_Chr1g0188071 | 35.714 | 308 | 173 | 8 | 18 | 312 | 46 | 341 | 4.51e-47 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731980 | AT4G08950.1 | 72.910 | 299 | 71 | 6 | 23 | 315 | 20 | 314 | 8.57e-150 | 423 |
| Msa0731980 | AT1G35140.1 | 64.331 | 314 | 106 | 3 | 1 | 314 | 1 | 308 | 3.62e-144 | 409 |
| Msa0731980 | AT5G64260.1 | 58.117 | 308 | 118 | 5 | 10 | 315 | 7 | 305 | 3.03e-121 | 350 |
| Msa0731980 | AT5G09440.1 | 59.124 | 274 | 83 | 7 | 44 | 315 | 32 | 278 | 5.45e-102 | 300 |
| Msa0731980 | AT5G51550.1 | 35.644 | 303 | 173 | 8 | 21 | 312 | 40 | 331 | 1.03e-48 | 166 |
| Msa0731980 | AT3G02970.1 | 31.438 | 299 | 169 | 7 | 46 | 313 | 37 | 330 | 4.45e-45 | 156 |
| Msa0731980 | AT2G17230.1 | 32.680 | 306 | 184 | 9 | 19 | 312 | 62 | 357 | 1.20e-42 | 150 |
| Msa0731980 | AT2G35150.1 | 34.259 | 324 | 184 | 11 | 8 | 311 | 2 | 316 | 2.04e-42 | 149 |
Find 71 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATGCAAGTTTAAGAATT+TGG | 0.173367 | 5_1:-43817994 | None:intergenic |
| CCATTTCACCAACCAATTTA+TGG | 0.182864 | 5_1:+43818205 | Msa0731980:CDS |
| TCAAGACCCACATCGTTATT+TGG | 0.213136 | 5_1:-43818253 | None:intergenic |
| TCTTATGGTGCACGCGTAAA+TGG | 0.225421 | 5_1:+43818112 | Msa0731980:CDS |
| GGAACCCATGGTTCTTCTTA+TGG | 0.283880 | 5_1:+43818097 | Msa0731980:CDS |
| CTTGACGAGAATTACTCTTT+AGG | 0.286620 | 5_1:+43817953 | Msa0731980:CDS |
| GCACTTTGTGGACCATAAAT+TGG | 0.307975 | 5_1:-43818217 | None:intergenic |
| GCTTCCAAAGGAGCTTCTTT+TGG | 0.308698 | 5_1:-43818352 | None:intergenic |
| GAAACAAGTTCGCGTACATT+TGG | 0.347338 | 5_1:+43818140 | Msa0731980:CDS |
| TCCATACCAAATGAGGTTTA+CGG | 0.350588 | 5_1:-43817747 | None:intergenic |
| AAATTTCCGTAAACCTCATT+TGG | 0.356091 | 5_1:+43817741 | Msa0731980:CDS |
| AGCTCCTTTGGAAGCTGCTT+CGG | 0.362716 | 5_1:+43818360 | Msa0731980:CDS |
| GTTAACTGATTTCTTGTTGT+TGG | 0.363360 | 5_1:-43817903 | None:intergenic |
| AGGACCAAAAGAAGCTCCTT+TGG | 0.376105 | 5_1:+43818348 | Msa0731980:CDS |
| CCATAAATTGGTTGGTGAAA+TGG | 0.381983 | 5_1:-43818205 | None:intergenic |
| AATAACGATGTGGGTCTTGA+TGG | 0.390121 | 5_1:+43818256 | Msa0731980:CDS |
| TATAACGCAAATGGTGATAA+TGG | 0.393265 | 5_1:+43818463 | Msa0731980:CDS |
| AAACAAGTTCGCGTACATTT+GGG | 0.409022 | 5_1:+43818141 | Msa0731980:CDS |
| CGGTTAGAAGAGGGCCTTTG+TGG | 0.418791 | 5_1:-43817715 | None:intergenic |
| GGAGCTTATCCTGGTTATGC+TGG | 0.426719 | 5_1:+43818406 | Msa0731980:CDS |
| ATTCTTAAACTTGCATCAAA+AGG | 0.432195 | 5_1:+43817998 | Msa0731980:CDS |
| TCCGTAAACCTCATTTGGTA+TGG | 0.445565 | 5_1:+43817746 | Msa0731980:CDS |
| CTAACACATCAGCTGCTGTT+AGG | 0.449185 | 5_1:-43818048 | None:intergenic |
| GGTATTGAAATTTAAGTTGT+TGG | 0.450783 | 5_1:-43817694 | None:intergenic |
| CACAAAGGCCCTCTTCTAAC+CGG | 0.451377 | 5_1:+43817716 | Msa0731980:CDS |
| GGAACCGTAACCAATCCTTT+TGG | 0.451430 | 5_1:+43818310 | Msa0731980:CDS |
| TGAAAATATCCATTACCAAA+AGG | 0.461381 | 5_1:-43818325 | None:intergenic |
| TGCTGTTAGGACAACGTTGA+TGG | 0.463697 | 5_1:-43818035 | None:intergenic |
| GCAACCAATGGTGCACTTTG+TGG | 0.466845 | 5_1:-43818229 | None:intergenic |
| GCAGCTGATGTGTTAGTTGA+CGG | 0.474128 | 5_1:+43818055 | Msa0731980:CDS |
| GAAGCTGCTTCGGCTTGTAC+CGG | 0.475241 | 5_1:+43818370 | Msa0731980:CDS |
| TGTACCGGTGTTTATGCTAA+AGG | 0.481549 | 5_1:+43818385 | Msa0731980:CDS |
| ATATCCATTACCAAAAGGAT+TGG | 0.488324 | 5_1:-43818320 | None:intergenic |
| AGCTAGAAAACTCACTGAAT+CGG | 0.492163 | 5_1:+43817670 | Msa0731980:CDS |
| TATGCTAAAGGAGCTTATCC+TGG | 0.497752 | 5_1:+43818397 | Msa0731980:CDS |
| ATTACCAAAAGGATTGGTTA+CGG | 0.504727 | 5_1:-43818314 | None:intergenic |
| GAGTACCTAGCGAGAGAGCT+AGG | 0.504789 | 5_1:-43817925 | None:intergenic |
| TGGTCCACAAAGTGCACCAT+TGG | 0.507521 | 5_1:+43818225 | Msa0731980:CDS |
| TCGTTATTTGGTGCAACCAA+TGG | 0.521248 | 5_1:-43818241 | None:intergenic |
| GAGGTTTACGGAAATTTGAC+CGG | 0.523320 | 5_1:-43817735 | None:intergenic |
| GAGCTTATCCTGGTTATGCT+GGG | 0.526776 | 5_1:+43818407 | Msa0731980:CDS |
| GGTGCTAGCTATAACGCAAA+TGG | 0.528973 | 5_1:+43818454 | Msa0731980:CDS |
| TTATGCTGGGGACCTTCTAG+TGG | 0.532370 | 5_1:+43818420 | Msa0731980:CDS |
| AACCTCAGCTTGTTCTACAT+TGG | 0.544398 | 5_1:+43818522 | Msa0731980:CDS |
| AATTCTGAAACTCAATGTGC+TGG | 0.549654 | 5_1:+43818169 | Msa0731980:CDS |
| CGATGTGGGTCTTGATGGAA+TGG | 0.552866 | 5_1:+43818261 | Msa0731980:CDS |
| ATTTCTTGTTGTTGGCGAGT+TGG | 0.557308 | 5_1:-43817895 | None:intergenic |
| ACGCAAATGGTGATAATGGA+AGG | 0.560708 | 5_1:+43818467 | Msa0731980:CDS |
| AAGTTCGCGTACATTTGGGT+TGG | 0.562836 | 5_1:+43818145 | Msa0731980:CDS |
| GTTAACCTAGCTCTCTCGCT+AGG | 0.568037 | 5_1:+43817920 | Msa0731980:CDS |
| TCGAGTAGGTGTGGAACCCA+TGG | 0.571020 | 5_1:+43818085 | Msa0731980:CDS |
| AGAAGGTCCCCAGCATAACC+AGG | 0.571861 | 5_1:-43818415 | None:intergenic |
| TACCAATGTAGAACAAGCTG+AGG | 0.574594 | 5_1:-43818524 | None:intergenic |
| AAATTTGACCGGTTAGAAGA+GGG | 0.580322 | 5_1:-43817724 | None:intergenic |
| TTCCACCACGTGGCAACTGA+TGG | 0.582258 | 5_1:-43817854 | None:intergenic |
| GAAATTTGACCGGTTAGAAG+AGG | 0.586540 | 5_1:-43817725 | None:intergenic |
| AACCATCAGTTGCCACGTGG+TGG | 0.610757 | 5_1:+43817852 | Msa0731980:CDS |
| TTTGTGGACCATAAATTGGT+TGG | 0.611426 | 5_1:-43818213 | None:intergenic |
| CTTAAATTTCAATACCACAA+AGG | 0.623830 | 5_1:+43817701 | Msa0731980:CDS |
| GTGCACCATAAGAAGAACCA+TGG | 0.625761 | 5_1:-43818102 | None:intergenic |
| GGTTGCACCAAATAACGATG+TGG | 0.628110 | 5_1:+43818246 | Msa0731980:CDS |
| AGCTTATCCTGGTTATGCTG+GGG | 0.628401 | 5_1:+43818408 | Msa0731980:CDS |
| CAAGCCGAAGCAGCTTCCAA+AGG | 0.645366 | 5_1:-43818364 | None:intergenic |
| TTCGGTTGATTTCCACCACG+TGG | 0.652662 | 5_1:-43817864 | None:intergenic |
| TGCACCATAAGAAGAACCAT+GGG | 0.655555 | 5_1:-43818101 | None:intergenic |
| GTTGCACCAAATAACGATGT+GGG | 0.661869 | 5_1:+43818247 | Msa0731980:CDS |
| CTTCTAGTGGACAAAACAAG+TGG | 0.666644 | 5_1:+43818433 | Msa0731980:CDS |
| GGCAACTGATGGTTGTGATG+TGG | 0.667076 | 5_1:-43817843 | None:intergenic |
| AATGTGCTGGTCAATGTGCA+TGG | 0.681885 | 5_1:+43818182 | Msa0731980:CDS |
| AGCTCCTTTAGCATAAACAC+CGG | 0.684494 | 5_1:-43818389 | None:intergenic |
| CACAACCATCAGTTGCCACG+TGG | 0.702852 | 5_1:+43817849 | Msa0731980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GGTATTGAAATTTAAGTTGT+TGG | - | chr5_1:43817697-43817716 | None:intergenic | 25.0% |
| ! | CTTAAATTTCAATACCACAA+AGG | + | chr5_1:43817701-43817720 | Msa0731980:CDS | 25.0% |
| ! | TTGATGCAAGTTTAAGAATT+TGG | - | chr5_1:43817997-43818016 | None:intergenic | 25.0% |
| ! | ATTCTTAAACTTGCATCAAA+AGG | + | chr5_1:43817998-43818017 | Msa0731980:CDS | 25.0% |
| ! | TGAAAATATCCATTACCAAA+AGG | - | chr5_1:43818328-43818347 | None:intergenic | 25.0% |
| !!! | TTTGGTAATGGATATTTTCA+AGG | + | chr5_1:43818328-43818347 | Msa0731980:CDS | 25.0% |
| !!! | GGTATTGAAATTTAAGTTGT+TGG | - | chr5_1:43817697-43817716 | None:intergenic | 25.0% |
| ! | CTTAAATTTCAATACCACAA+AGG | + | chr5_1:43817701-43817720 | Msa0731980:CDS | 25.0% |
| ! | TTGATGCAAGTTTAAGAATT+TGG | - | chr5_1:43817997-43818016 | None:intergenic | 25.0% |
| ! | ATTCTTAAACTTGCATCAAA+AGG | + | chr5_1:43817998-43818017 | Msa0731980:CDS | 25.0% |
| ! | TGAAAATATCCATTACCAAA+AGG | - | chr5_1:43818328-43818347 | None:intergenic | 25.0% |
| !!! | TTTGGTAATGGATATTTTCA+AGG | + | chr5_1:43818328-43818347 | Msa0731980:CDS | 25.0% |
| AAATTTCCGTAAACCTCATT+TGG | + | chr5_1:43817741-43817760 | Msa0731980:CDS | 30.0% | |
| ! | TGAATTTTCCATACCAAATG+AGG | - | chr5_1:43817757-43817776 | None:intergenic | 30.0% |
| !!! | TTTTTTAGGAGAAGAAAGTG+AGG | - | chr5_1:43817816-43817835 | None:intergenic | 30.0% |
| !!! | GATGTGGTTGTTTGTTTTTT+AGG | - | chr5_1:43817830-43817849 | None:intergenic | 30.0% |
| ! | GTTAACTGATTTCTTGTTGT+TGG | - | chr5_1:43817906-43817925 | None:intergenic | 30.0% |
| !! | ATTACCAAAAGGATTGGTTA+CGG | - | chr5_1:43818317-43818336 | None:intergenic | 30.0% |
| ATATCCATTACCAAAAGGAT+TGG | - | chr5_1:43818323-43818342 | None:intergenic | 30.0% | |
| TATAACGCAAATGGTGATAA+TGG | + | chr5_1:43818463-43818482 | Msa0731980:CDS | 30.0% | |
| AAATTTCCGTAAACCTCATT+TGG | + | chr5_1:43817741-43817760 | Msa0731980:CDS | 30.0% | |
| ! | TGAATTTTCCATACCAAATG+AGG | - | chr5_1:43817757-43817776 | None:intergenic | 30.0% |
| !!! | TTTTTTAGGAGAAGAAAGTG+AGG | - | chr5_1:43817816-43817835 | None:intergenic | 30.0% |
| !!! | GATGTGGTTGTTTGTTTTTT+AGG | - | chr5_1:43817830-43817849 | None:intergenic | 30.0% |
| ! | GTTAACTGATTTCTTGTTGT+TGG | - | chr5_1:43817906-43817925 | None:intergenic | 30.0% |
| !! | ATTACCAAAAGGATTGGTTA+CGG | - | chr5_1:43818317-43818336 | None:intergenic | 30.0% |
| ATATCCATTACCAAAAGGAT+TGG | - | chr5_1:43818323-43818342 | None:intergenic | 30.0% | |
| TATAACGCAAATGGTGATAA+TGG | + | chr5_1:43818463-43818482 | Msa0731980:CDS | 30.0% | |
| AGCTAGAAAACTCACTGAAT+CGG | + | chr5_1:43817670-43817689 | Msa0731980:CDS | 35.0% | |
| AAATTTGACCGGTTAGAAGA+GGG | - | chr5_1:43817727-43817746 | None:intergenic | 35.0% | |
| TCCATACCAAATGAGGTTTA+CGG | - | chr5_1:43817750-43817769 | None:intergenic | 35.0% | |
| !!! | GGCGAGTTGGTAATATTTTT+CGG | - | chr5_1:43817885-43817904 | None:intergenic | 35.0% |
| CTTGACGAGAATTACTCTTT+AGG | + | chr5_1:43817953-43817972 | Msa0731980:CDS | 35.0% | |
| AAACAAGTTCGCGTACATTT+GGG | + | chr5_1:43818141-43818160 | Msa0731980:CDS | 35.0% | |
| !! | AATTCTGAAACTCAATGTGC+TGG | + | chr5_1:43818169-43818188 | Msa0731980:CDS | 35.0% |
| !! | CCATAAATTGGTTGGTGAAA+TGG | - | chr5_1:43818208-43818227 | None:intergenic | 35.0% |
| CCATTTCACCAACCAATTTA+TGG | + | chr5_1:43818205-43818224 | Msa0731980:CDS | 35.0% | |
| TTTGTGGACCATAAATTGGT+TGG | - | chr5_1:43818216-43818235 | None:intergenic | 35.0% | |
| ! | GTAACCAATCCTTTTGGTAA+TGG | + | chr5_1:43818316-43818335 | Msa0731980:CDS | 35.0% |
| AGCTAGAAAACTCACTGAAT+CGG | + | chr5_1:43817670-43817689 | Msa0731980:CDS | 35.0% | |
| AAATTTGACCGGTTAGAAGA+GGG | - | chr5_1:43817727-43817746 | None:intergenic | 35.0% | |
| TCCATACCAAATGAGGTTTA+CGG | - | chr5_1:43817750-43817769 | None:intergenic | 35.0% | |
| !!! | GGCGAGTTGGTAATATTTTT+CGG | - | chr5_1:43817885-43817904 | None:intergenic | 35.0% |
| CTTGACGAGAATTACTCTTT+AGG | + | chr5_1:43817953-43817972 | Msa0731980:CDS | 35.0% | |
| AAACAAGTTCGCGTACATTT+GGG | + | chr5_1:43818141-43818160 | Msa0731980:CDS | 35.0% | |
| !! | AATTCTGAAACTCAATGTGC+TGG | + | chr5_1:43818169-43818188 | Msa0731980:CDS | 35.0% |
| !! | CCATAAATTGGTTGGTGAAA+TGG | - | chr5_1:43818208-43818227 | None:intergenic | 35.0% |
| CCATTTCACCAACCAATTTA+TGG | + | chr5_1:43818205-43818224 | Msa0731980:CDS | 35.0% | |
| TTTGTGGACCATAAATTGGT+TGG | - | chr5_1:43818216-43818235 | None:intergenic | 35.0% | |
| ! | GTAACCAATCCTTTTGGTAA+TGG | + | chr5_1:43818316-43818335 | Msa0731980:CDS | 35.0% |
| GAAATTTGACCGGTTAGAAG+AGG | - | chr5_1:43817728-43817747 | None:intergenic | 40.0% | |
| GAGGTTTACGGAAATTTGAC+CGG | - | chr5_1:43817738-43817757 | None:intergenic | 40.0% | |
| TCCGTAAACCTCATTTGGTA+TGG | + | chr5_1:43817746-43817765 | Msa0731980:CDS | 40.0% | |
| !! | ATTTCTTGTTGTTGGCGAGT+TGG | - | chr5_1:43817898-43817917 | None:intergenic | 40.0% |
| !!! | TTGACGGATTTTGTTCGAGT+AGG | + | chr5_1:43818071-43818090 | Msa0731980:CDS | 40.0% |
| TGCACCATAAGAAGAACCAT+GGG | - | chr5_1:43818104-43818123 | None:intergenic | 40.0% | |
| GAAACAAGTTCGCGTACATT+TGG | + | chr5_1:43818140-43818159 | Msa0731980:CDS | 40.0% | |
| GCACTTTGTGGACCATAAAT+TGG | - | chr5_1:43818220-43818239 | None:intergenic | 40.0% | |
| !! | TCGTTATTTGGTGCAACCAA+TGG | - | chr5_1:43818244-43818263 | None:intergenic | 40.0% |
| GTTGCACCAAATAACGATGT+GGG | + | chr5_1:43818247-43818266 | Msa0731980:CDS | 40.0% | |
| TCAAGACCCACATCGTTATT+TGG | - | chr5_1:43818256-43818275 | None:intergenic | 40.0% | |
| AATAACGATGTGGGTCTTGA+TGG | + | chr5_1:43818256-43818275 | Msa0731980:CDS | 40.0% | |
| !!! | AATGTCGCTAGTCTTTTAGC+TGG | + | chr5_1:43818289-43818308 | Msa0731980:CDS | 40.0% |
| ! | TGTACCGGTGTTTATGCTAA+AGG | + | chr5_1:43818385-43818404 | Msa0731980:CDS | 40.0% |
| AGCTCCTTTAGCATAAACAC+CGG | - | chr5_1:43818392-43818411 | None:intergenic | 40.0% | |
| TATGCTAAAGGAGCTTATCC+TGG | + | chr5_1:43818397-43818416 | Msa0731980:CDS | 40.0% | |
| !!! | CACTTGTTTTGTCCACTAGA+AGG | - | chr5_1:43818435-43818454 | None:intergenic | 40.0% |
| ! | CTTCTAGTGGACAAAACAAG+TGG | + | chr5_1:43818433-43818452 | Msa0731980:CDS | 40.0% |
| !! | ACGCAAATGGTGATAATGGA+AGG | + | chr5_1:43818467-43818486 | Msa0731980:CDS | 40.0% |
| ! | GTAGAACAAGCTGAGGTTTT+AGG | - | chr5_1:43818520-43818539 | None:intergenic | 40.0% |
| ! | AACCTCAGCTTGTTCTACAT+TGG | + | chr5_1:43818522-43818541 | Msa0731980:CDS | 40.0% |
| TACCAATGTAGAACAAGCTG+AGG | - | chr5_1:43818527-43818546 | None:intergenic | 40.0% | |
| GAAATTTGACCGGTTAGAAG+AGG | - | chr5_1:43817728-43817747 | None:intergenic | 40.0% | |
| GAGGTTTACGGAAATTTGAC+CGG | - | chr5_1:43817738-43817757 | None:intergenic | 40.0% | |
| TCCGTAAACCTCATTTGGTA+TGG | + | chr5_1:43817746-43817765 | Msa0731980:CDS | 40.0% | |
| !! | ATTTCTTGTTGTTGGCGAGT+TGG | - | chr5_1:43817898-43817917 | None:intergenic | 40.0% |
| !!! | TTGACGGATTTTGTTCGAGT+AGG | + | chr5_1:43818071-43818090 | Msa0731980:CDS | 40.0% |
| TGCACCATAAGAAGAACCAT+GGG | - | chr5_1:43818104-43818123 | None:intergenic | 40.0% | |
| GAAACAAGTTCGCGTACATT+TGG | + | chr5_1:43818140-43818159 | Msa0731980:CDS | 40.0% | |
| GCACTTTGTGGACCATAAAT+TGG | - | chr5_1:43818220-43818239 | None:intergenic | 40.0% | |
| !! | TCGTTATTTGGTGCAACCAA+TGG | - | chr5_1:43818244-43818263 | None:intergenic | 40.0% |
| GTTGCACCAAATAACGATGT+GGG | + | chr5_1:43818247-43818266 | Msa0731980:CDS | 40.0% | |
| TCAAGACCCACATCGTTATT+TGG | - | chr5_1:43818256-43818275 | None:intergenic | 40.0% | |
| AATAACGATGTGGGTCTTGA+TGG | + | chr5_1:43818256-43818275 | Msa0731980:CDS | 40.0% | |
| !!! | AATGTCGCTAGTCTTTTAGC+TGG | + | chr5_1:43818289-43818308 | Msa0731980:CDS | 40.0% |
| ! | TGTACCGGTGTTTATGCTAA+AGG | + | chr5_1:43818385-43818404 | Msa0731980:CDS | 40.0% |
| AGCTCCTTTAGCATAAACAC+CGG | - | chr5_1:43818392-43818411 | None:intergenic | 40.0% | |
| TATGCTAAAGGAGCTTATCC+TGG | + | chr5_1:43818397-43818416 | Msa0731980:CDS | 40.0% | |
| !!! | CACTTGTTTTGTCCACTAGA+AGG | - | chr5_1:43818435-43818454 | None:intergenic | 40.0% |
| ! | CTTCTAGTGGACAAAACAAG+TGG | + | chr5_1:43818433-43818452 | Msa0731980:CDS | 40.0% |
| !! | ACGCAAATGGTGATAATGGA+AGG | + | chr5_1:43818467-43818486 | Msa0731980:CDS | 40.0% |
| ! | GTAGAACAAGCTGAGGTTTT+AGG | - | chr5_1:43818520-43818539 | None:intergenic | 40.0% |
| ! | AACCTCAGCTTGTTCTACAT+TGG | + | chr5_1:43818522-43818541 | Msa0731980:CDS | 40.0% |
| TACCAATGTAGAACAAGCTG+AGG | - | chr5_1:43818527-43818546 | None:intergenic | 40.0% | |
| TGCTGTTAGGACAACGTTGA+TGG | - | chr5_1:43818038-43818057 | None:intergenic | 45.0% | |
| CTAACACATCAGCTGCTGTT+AGG | - | chr5_1:43818051-43818070 | None:intergenic | 45.0% | |
| GCAGCTGATGTGTTAGTTGA+CGG | + | chr5_1:43818055-43818074 | Msa0731980:CDS | 45.0% | |
| ! | GGATTTTGTTCGAGTAGGTG+TGG | + | chr5_1:43818076-43818095 | Msa0731980:CDS | 45.0% |
| GGAACCCATGGTTCTTCTTA+TGG | + | chr5_1:43818097-43818116 | Msa0731980:CDS | 45.0% | |
| GTGCACCATAAGAAGAACCA+TGG | - | chr5_1:43818105-43818124 | None:intergenic | 45.0% | |
| TCTTATGGTGCACGCGTAAA+TGG | + | chr5_1:43818112-43818131 | Msa0731980:CDS | 45.0% | |
| AAGTTCGCGTACATTTGGGT+TGG | + | chr5_1:43818145-43818164 | Msa0731980:CDS | 45.0% | |
| ! | AATGTGCTGGTCAATGTGCA+TGG | + | chr5_1:43818182-43818201 | Msa0731980:CDS | 45.0% |
| GGTTGCACCAAATAACGATG+TGG | + | chr5_1:43818246-43818265 | Msa0731980:CDS | 45.0% | |
| ! | GGAACCGTAACCAATCCTTT+TGG | + | chr5_1:43818310-43818329 | Msa0731980:CDS | 45.0% |
| AGGACCAAAAGAAGCTCCTT+TGG | + | chr5_1:43818348-43818367 | Msa0731980:CDS | 45.0% | |
| ! | GCTTCCAAAGGAGCTTCTTT+TGG | - | chr5_1:43818355-43818374 | None:intergenic | 45.0% |
| GAGCTTATCCTGGTTATGCT+GGG | + | chr5_1:43818407-43818426 | Msa0731980:CDS | 45.0% | |
| AGCTTATCCTGGTTATGCTG+GGG | + | chr5_1:43818408-43818427 | Msa0731980:CDS | 45.0% | |
| GGTGCTAGCTATAACGCAAA+TGG | + | chr5_1:43818454-43818473 | Msa0731980:CDS | 45.0% | |
| !!! | GTTTTAGGATCAGCAATCGC+AGG | - | chr5_1:43818505-43818524 | None:intergenic | 45.0% |
| TGCTGTTAGGACAACGTTGA+TGG | - | chr5_1:43818038-43818057 | None:intergenic | 45.0% | |
| CTAACACATCAGCTGCTGTT+AGG | - | chr5_1:43818051-43818070 | None:intergenic | 45.0% | |
| GCAGCTGATGTGTTAGTTGA+CGG | + | chr5_1:43818055-43818074 | Msa0731980:CDS | 45.0% | |
| ! | GGATTTTGTTCGAGTAGGTG+TGG | + | chr5_1:43818076-43818095 | Msa0731980:CDS | 45.0% |
| GGAACCCATGGTTCTTCTTA+TGG | + | chr5_1:43818097-43818116 | Msa0731980:CDS | 45.0% | |
| GTGCACCATAAGAAGAACCA+TGG | - | chr5_1:43818105-43818124 | None:intergenic | 45.0% | |
| TCTTATGGTGCACGCGTAAA+TGG | + | chr5_1:43818112-43818131 | Msa0731980:CDS | 45.0% | |
| AAGTTCGCGTACATTTGGGT+TGG | + | chr5_1:43818145-43818164 | Msa0731980:CDS | 45.0% | |
| ! | AATGTGCTGGTCAATGTGCA+TGG | + | chr5_1:43818182-43818201 | Msa0731980:CDS | 45.0% |
| GGTTGCACCAAATAACGATG+TGG | + | chr5_1:43818246-43818265 | Msa0731980:CDS | 45.0% | |
| ! | GGAACCGTAACCAATCCTTT+TGG | + | chr5_1:43818310-43818329 | Msa0731980:CDS | 45.0% |
| AGGACCAAAAGAAGCTCCTT+TGG | + | chr5_1:43818348-43818367 | Msa0731980:CDS | 45.0% | |
| ! | GCTTCCAAAGGAGCTTCTTT+TGG | - | chr5_1:43818355-43818374 | None:intergenic | 45.0% |
| GAGCTTATCCTGGTTATGCT+GGG | + | chr5_1:43818407-43818426 | Msa0731980:CDS | 45.0% | |
| AGCTTATCCTGGTTATGCTG+GGG | + | chr5_1:43818408-43818427 | Msa0731980:CDS | 45.0% | |
| GGTGCTAGCTATAACGCAAA+TGG | + | chr5_1:43818454-43818473 | Msa0731980:CDS | 45.0% | |
| !!! | GTTTTAGGATCAGCAATCGC+AGG | - | chr5_1:43818505-43818524 | None:intergenic | 45.0% |
| CACAAAGGCCCTCTTCTAAC+CGG | + | chr5_1:43817716-43817735 | Msa0731980:CDS | 50.0% | |
| GGCAACTGATGGTTGTGATG+TGG | - | chr5_1:43817846-43817865 | None:intergenic | 50.0% | |
| ! | TTCGGTTGATTTCCACCACG+TGG | - | chr5_1:43817867-43817886 | None:intergenic | 50.0% |
| ! | GTTAACCTAGCTCTCTCGCT+AGG | + | chr5_1:43817920-43817939 | Msa0731980:CDS | 50.0% |
| TGGTCCACAAAGTGCACCAT+TGG | + | chr5_1:43818225-43818244 | Msa0731980:CDS | 50.0% | |
| GCAACCAATGGTGCACTTTG+TGG | - | chr5_1:43818232-43818251 | None:intergenic | 50.0% | |
| CGATGTGGGTCTTGATGGAA+TGG | + | chr5_1:43818261-43818280 | Msa0731980:CDS | 50.0% | |
| ! | AGCTCCTTTGGAAGCTGCTT+CGG | + | chr5_1:43818360-43818379 | Msa0731980:CDS | 50.0% |
| GGAGCTTATCCTGGTTATGC+TGG | + | chr5_1:43818406-43818425 | Msa0731980:CDS | 50.0% | |
| TTATGCTGGGGACCTTCTAG+TGG | + | chr5_1:43818420-43818439 | Msa0731980:CDS | 50.0% | |
| CACAAAGGCCCTCTTCTAAC+CGG | + | chr5_1:43817716-43817735 | Msa0731980:CDS | 50.0% | |
| GGCAACTGATGGTTGTGATG+TGG | - | chr5_1:43817846-43817865 | None:intergenic | 50.0% | |
| ! | TTCGGTTGATTTCCACCACG+TGG | - | chr5_1:43817867-43817886 | None:intergenic | 50.0% |
| ! | GTTAACCTAGCTCTCTCGCT+AGG | + | chr5_1:43817920-43817939 | Msa0731980:CDS | 50.0% |
| TGGTCCACAAAGTGCACCAT+TGG | + | chr5_1:43818225-43818244 | Msa0731980:CDS | 50.0% | |
| GCAACCAATGGTGCACTTTG+TGG | - | chr5_1:43818232-43818251 | None:intergenic | 50.0% | |
| CGATGTGGGTCTTGATGGAA+TGG | + | chr5_1:43818261-43818280 | Msa0731980:CDS | 50.0% | |
| ! | AGCTCCTTTGGAAGCTGCTT+CGG | + | chr5_1:43818360-43818379 | Msa0731980:CDS | 50.0% |
| GGAGCTTATCCTGGTTATGC+TGG | + | chr5_1:43818406-43818425 | Msa0731980:CDS | 50.0% | |
| TTATGCTGGGGACCTTCTAG+TGG | + | chr5_1:43818420-43818439 | Msa0731980:CDS | 50.0% | |
| CGGTTAGAAGAGGGCCTTTG+TGG | - | chr5_1:43817718-43817737 | None:intergenic | 55.0% | |
| CACAACCATCAGTTGCCACG+TGG | + | chr5_1:43817849-43817868 | Msa0731980:CDS | 55.0% | |
| AACCATCAGTTGCCACGTGG+TGG | + | chr5_1:43817852-43817871 | Msa0731980:CDS | 55.0% | |
| TTCCACCACGTGGCAACTGA+TGG | - | chr5_1:43817857-43817876 | None:intergenic | 55.0% | |
| GAGTACCTAGCGAGAGAGCT+AGG | - | chr5_1:43817928-43817947 | None:intergenic | 55.0% | |
| TCGAGTAGGTGTGGAACCCA+TGG | + | chr5_1:43818085-43818104 | Msa0731980:CDS | 55.0% | |
| CAAGCCGAAGCAGCTTCCAA+AGG | - | chr5_1:43818367-43818386 | None:intergenic | 55.0% | |
| ! | GAAGCTGCTTCGGCTTGTAC+CGG | + | chr5_1:43818370-43818389 | Msa0731980:CDS | 55.0% |
| AGAAGGTCCCCAGCATAACC+AGG | - | chr5_1:43818418-43818437 | None:intergenic | 55.0% | |
| CGGTTAGAAGAGGGCCTTTG+TGG | - | chr5_1:43817718-43817737 | None:intergenic | 55.0% | |
| CACAACCATCAGTTGCCACG+TGG | + | chr5_1:43817849-43817868 | Msa0731980:CDS | 55.0% | |
| AACCATCAGTTGCCACGTGG+TGG | + | chr5_1:43817852-43817871 | Msa0731980:CDS | 55.0% | |
| TTCCACCACGTGGCAACTGA+TGG | - | chr5_1:43817857-43817876 | None:intergenic | 55.0% | |
| GAGTACCTAGCGAGAGAGCT+AGG | - | chr5_1:43817928-43817947 | None:intergenic | 55.0% | |
| TCGAGTAGGTGTGGAACCCA+TGG | + | chr5_1:43818085-43818104 | Msa0731980:CDS | 55.0% | |
| CAAGCCGAAGCAGCTTCCAA+AGG | - | chr5_1:43818367-43818386 | None:intergenic | 55.0% | |
| ! | GAAGCTGCTTCGGCTTGTAC+CGG | + | chr5_1:43818370-43818389 | Msa0731980:CDS | 55.0% |
| AGAAGGTCCCCAGCATAACC+AGG | - | chr5_1:43818418-43818437 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 43817602 | 43818549 | 43817602 | ID=Msa0731980;Name=Msa0731980 |
| chr5_1 | mRNA | 43817602 | 43818549 | 43817602 | ID=Msa0731980-mRNA-1;Parent=Msa0731980;Name=Msa0731980-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|315 |
| chr5_1 | exon | 43817602 | 43818549 | 43817602 | ID=Msa0731980-mRNA-1:exon:12468;Parent=Msa0731980-mRNA-1 |
| chr5_1 | CDS | 43817602 | 43818549 | 43817602 | ID=Msa0731980-mRNA-1:cds;Parent=Msa0731980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
