Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732010 | XP_003615144.1 | 94.937 | 316 | 16 | 0 | 1 | 316 | 1 | 316 | 0.0 | 619 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732010 | sp|O82161|PHI1_TOBAC | 75.000 | 312 | 69 | 4 | 9 | 316 | 7 | 313 | 1.61e-167 | 471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732010 | G7KBC1 | 94.937 | 316 | 16 | 0 | 1 | 316 | 1 | 316 | 0.0 | 619 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0731980 | Msa0732010 | 0.894288 | 2.838540e-75 | -8.615850e-47 |
| Msa0731990 | Msa0732010 | 0.876379 | 1.463327e-68 | -8.615850e-47 |
| Msa0732010 | Msa0810190 | 0.824412 | 8.184224e-54 | -8.615850e-47 |
| Msa0732010 | Msa0853250 | 0.808886 | 2.484769e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732010 | MtrunA17_Chr5g0426441 | 94.855 | 311 | 16 | 0 | 6 | 316 | 648 | 958 | 0.0 | 609 |
| Msa0732010 | MtrunA17_Chr5g0426441 | 92.089 | 316 | 24 | 1 | 1 | 316 | 25 | 339 | 0.0 | 595 |
| Msa0732010 | MtrunA17_Chr5g0426441 | 92.926 | 311 | 21 | 1 | 6 | 316 | 339 | 648 | 0.0 | 591 |
| Msa0732010 | MtrunA17_Chr3g0116001 | 79.461 | 297 | 48 | 3 | 20 | 316 | 21 | 304 | 1.75e-173 | 483 |
| Msa0732010 | MtrunA17_Chr3g0116011 | 79.125 | 297 | 49 | 4 | 20 | 316 | 21 | 304 | 5.38e-172 | 479 |
| Msa0732010 | MtrunA17_Chr3g0115951 | 72.026 | 311 | 83 | 3 | 9 | 316 | 8 | 317 | 1.07e-157 | 443 |
| Msa0732010 | MtrunA17_Chr4g0050321 | 61.404 | 285 | 96 | 3 | 32 | 316 | 30 | 300 | 2.12e-123 | 355 |
| Msa0732010 | MtrunA17_Chr2g0279311 | 52.366 | 317 | 136 | 6 | 1 | 316 | 2 | 304 | 3.47e-119 | 345 |
| Msa0732010 | MtrunA17_Chr4g0018171 | 36.806 | 288 | 160 | 8 | 25 | 301 | 53 | 329 | 4.47e-48 | 164 |
| Msa0732010 | MtrunA17_Chr1g0188071 | 34.528 | 307 | 180 | 7 | 6 | 301 | 33 | 329 | 5.90e-47 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732010 | AT4G08950.1 | 71.717 | 297 | 78 | 4 | 24 | 316 | 20 | 314 | 3.13e-150 | 424 |
| Msa0732010 | AT1G35140.1 | 65.079 | 315 | 103 | 3 | 1 | 315 | 1 | 308 | 1.06e-145 | 412 |
| Msa0732010 | AT5G64260.1 | 57.468 | 308 | 121 | 4 | 10 | 316 | 7 | 305 | 6.70e-122 | 352 |
| Msa0732010 | AT5G09440.1 | 55.814 | 301 | 99 | 7 | 18 | 316 | 10 | 278 | 1.53e-103 | 305 |
| Msa0732010 | AT5G51550.1 | 36.066 | 305 | 173 | 8 | 20 | 313 | 38 | 331 | 1.46e-49 | 168 |
| Msa0732010 | AT3G02970.1 | 31.667 | 300 | 167 | 8 | 47 | 314 | 37 | 330 | 7.84e-46 | 158 |
| Msa0732010 | AT2G35150.1 | 33.538 | 325 | 189 | 11 | 6 | 312 | 1 | 316 | 1.60e-41 | 147 |
| Msa0732010 | AT2G17230.1 | 31.908 | 304 | 185 | 9 | 22 | 313 | 64 | 357 | 2.34e-41 | 147 |
Find 69 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTCACCAACCAATTTA+TGG | 0.182864 | 5_1:+43842702 | Msa0732010:CDS |
| TCAAGACCCACATCGTTATT+TGG | 0.231019 | 5_1:-43842750 | None:intergenic |
| TTGATGCAAGTTTAAGGATT+TGG | 0.266389 | 5_1:-43842491 | None:intergenic |
| GGAACCCACGGTTCTTCTTA+TGG | 0.267702 | 5_1:+43842594 | Msa0732010:CDS |
| TGGATATGCTGGGGACCTTT+TGG | 0.271387 | 5_1:+43842914 | Msa0732010:CDS |
| AACATAAATTCGCATACATT+TGG | 0.287196 | 5_1:+43842637 | Msa0732010:CDS |
| AATCAGTTATGATGGCTCTT+TGG | 0.297339 | 5_1:-43842281 | None:intergenic |
| CTCGATGAGAATTACTCTTT+AGG | 0.297921 | 5_1:+43842450 | Msa0732010:CDS |
| GCTTCCAAAGGAGCTTCTTT+TGG | 0.308698 | 5_1:-43842849 | None:intergenic |
| GCACTTTGTGGACCATAAAT+TGG | 0.324103 | 5_1:-43842714 | None:intergenic |
| TACAATGCAAATGGTGATAA+TGG | 0.362381 | 5_1:+43842960 | Msa0732010:CDS |
| AGCTCCTTTGGAAGCTGCTT+CGG | 0.362716 | 5_1:+43842857 | Msa0732010:CDS |
| ATCAGTTATGATGGCTCTTT+GGG | 0.364014 | 5_1:-43842280 | None:intergenic |
| ACATAAATTCGCATACATTT+GGG | 0.370983 | 5_1:+43842638 | Msa0732010:CDS |
| AGGACCAAAAGAAGCTCCTT+TGG | 0.376105 | 5_1:+43842845 | Msa0732010:CDS |
| CCATAAATTGGTTGGTGAAA+TGG | 0.381983 | 5_1:-43842702 | None:intergenic |
| AAATCTCAGTCAACCTCATT+TGG | 0.388936 | 5_1:+43842238 | Msa0732010:CDS |
| CGGTGAGAAGAGGGCCTTTG+TGG | 0.408963 | 5_1:-43842212 | None:intergenic |
| TGGTCCACAAAGTGCACCTT+TGG | 0.411324 | 5_1:+43842722 | Msa0732010:CDS |
| GGAGCTTATCCTGGATATGC+TGG | 0.421249 | 5_1:+43842903 | Msa0732010:CDS |
| ATCCTTAAACTTGCATCAAA+AGG | 0.429930 | 5_1:+43842495 | Msa0732010:CDS |
| GGGACTGTAACCAATCCTTT+TGG | 0.434122 | 5_1:+43842807 | Msa0732010:CDS |
| GAAGCTGCTTCGGCTTGTAC+TGG | 0.438736 | 5_1:+43842867 | Msa0732010:CDS |
| TCTTATGGTGCACGCGTGAA+TGG | 0.440385 | 5_1:+43842609 | Msa0732010:CDS |
| GGTATTGAAATTTAAGTTGT+TGG | 0.450783 | 5_1:-43842191 | None:intergenic |
| AGCTGTTAGAACAACGTTGA+TGG | 0.452654 | 5_1:-43842532 | None:intergenic |
| TTTAAGTTGTTGGTCCGATT+CGG | 0.453958 | 5_1:-43842181 | None:intergenic |
| TGTACTGGTGTTTATGCTAA+AGG | 0.456460 | 5_1:+43842882 | Msa0732010:CDS |
| AATAACGATGTGGGTCTTGA+CGG | 0.470820 | 5_1:+43842753 | Msa0732010:CDS |
| TGAAAATAACCATCACCAAA+AGG | 0.492485 | 5_1:-43842822 | None:intergenic |
| TATGCTAAAGGAGCTTATCC+TGG | 0.492712 | 5_1:+43842894 | Msa0732010:CDS |
| TGCTAGAAAACTCACCGAAT+CGG | 0.497206 | 5_1:+43842167 | Msa0732010:CDS |
| TCAGTCAACCTCATTTGGTA+TGG | 0.501216 | 5_1:+43842243 | Msa0732010:CDS |
| AAAAGGTCCCCAGCATATCC+AGG | 0.509180 | 5_1:-43842912 | None:intergenic |
| GCTGCTGATGTGTTAGTTGA+CGG | 0.512705 | 5_1:+43842552 | Msa0732010:CDS |
| GTTATGATGGCTCTTTGGGA+TGG | 0.520405 | 5_1:-43842276 | None:intergenic |
| GGTTATGAAATCAGTTATGA+TGG | 0.523193 | 5_1:-43842289 | None:intergenic |
| AAATTCGCATACATTTGGGT+TGG | 0.526466 | 5_1:+43842642 | Msa0732010:CDS |
| GCAACCAAAGGTGCACTTTG+TGG | 0.529656 | 5_1:-43842726 | None:intergenic |
| TCCTCGTTTAGTAGAAGAGA+GGG | 0.531784 | 5_1:-43842313 | None:intergenic |
| CGATGTGGGTCTTGACGGAA+TGG | 0.534055 | 5_1:+43842758 | Msa0732010:CDS |
| TCGTTATTTGGTGCAACCAA+AGG | 0.539712 | 5_1:-43842738 | None:intergenic |
| GAGCTTATCCTGGATATGCT+GGG | 0.542526 | 5_1:+43842904 | Msa0732010:CDS |
| GCTAAACTAGCTCTCTCACT+AGG | 0.543046 | 5_1:+43842417 | Msa0732010:CDS |
| ATAACCATCACCAAAAGGAT+TGG | 0.543866 | 5_1:-43842817 | None:intergenic |
| ATGCAAATGGTGATAATGGA+AGG | 0.560708 | 5_1:+43842964 | Msa0732010:CDS |
| AACCTCAGTTTGTTCTACGT+TGG | 0.567385 | 5_1:+43843019 | Msa0732010:CDS |
| TTCCACCACGTGGCAACTGA+TGG | 0.582258 | 5_1:-43842351 | None:intergenic |
| GGTGCTAGCTACAATGCAAA+TGG | 0.590428 | 5_1:+43842951 | Msa0732010:CDS |
| TTCCTCGTTTAGTAGAAGAG+AGG | 0.592345 | 5_1:-43842314 | None:intergenic |
| AATTCAGAGACACAATGTGC+TGG | 0.594460 | 5_1:+43842666 | Msa0732010:CDS |
| TCGTTTAGTAGAAGAGAGGG+AGG | 0.601504 | 5_1:-43842310 | None:intergenic |
| TCAAGTAGGTGTGGAACCCA+CGG | 0.602320 | 5_1:+43842582 | Msa0732010:CDS |
| CACAAAGGCCCTCTTCTCAC+CGG | 0.608665 | 5_1:+43842213 | Msa0732010:CDS |
| CAAGCCGAAGCAGCTTCCAA+AGG | 0.609562 | 5_1:-43842861 | None:intergenic |
| AACCATCAGTTGCCACGTGG+TGG | 0.610757 | 5_1:+43842349 | Msa0732010:CDS |
| TTTGTGGACCATAAATTGGT+TGG | 0.611426 | 5_1:-43842710 | None:intergenic |
| GGTTGCACCAAATAACGATG+TGG | 0.612359 | 5_1:+43842743 | Msa0732010:CDS |
| CTTAAATTTCAATACCACAA+AGG | 0.623830 | 5_1:+43842198 | Msa0732010:CDS |
| GTTGCACCAAATAACGATGT+GGG | 0.631307 | 5_1:+43842744 | Msa0732010:CDS |
| AGCTTATCCTGGATATGCTG+GGG | 0.636147 | 5_1:+43842905 | Msa0732010:CDS |
| TTCAGTTGATTTCCACCACG+TGG | 0.645033 | 5_1:-43842361 | None:intergenic |
| TGCACCATAAGAAGAACCGT+GGG | 0.675126 | 5_1:-43842598 | None:intergenic |
| GTGCACCATAAGAAGAACCG+TGG | 0.675290 | 5_1:-43842599 | None:intergenic |
| AATGTGCTGGTCAATGCGCA+TGG | 0.679785 | 5_1:+43842679 | Msa0732010:CDS |
| TCCCTCTCTTCTACTAAACG+AGG | 0.692403 | 5_1:+43842312 | Msa0732010:CDS |
| GGCAACTGATGGTTGTGACG+TGG | 0.693973 | 5_1:-43842340 | None:intergenic |
| TACCAACGTAGAACAAACTG+AGG | 0.698074 | 5_1:-43843021 | None:intergenic |
| CACAACCATCAGTTGCCACG+TGG | 0.702852 | 5_1:+43842346 | Msa0732010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GGTATTGAAATTTAAGTTGT+TGG | - | chr5_1:43842194-43842213 | None:intergenic | 25.0% |
| ! | CTTAAATTTCAATACCACAA+AGG | + | chr5_1:43842198-43842217 | Msa0732010:CDS | 25.0% |
| !!! | TTTAGCTGACTTTTTATTGT+TGG | - | chr5_1:43842403-43842422 | None:intergenic | 25.0% |
| ! | AACATAAATTCGCATACATT+TGG | + | chr5_1:43842637-43842656 | Msa0732010:CDS | 25.0% |
| ! | ACATAAATTCGCATACATTT+GGG | + | chr5_1:43842638-43842657 | Msa0732010:CDS | 25.0% |
| !!! | GGTATTGAAATTTAAGTTGT+TGG | - | chr5_1:43842194-43842213 | None:intergenic | 25.0% |
| ! | CTTAAATTTCAATACCACAA+AGG | + | chr5_1:43842198-43842217 | Msa0732010:CDS | 25.0% |
| !!! | TTTAGCTGACTTTTTATTGT+TGG | - | chr5_1:43842403-43842422 | None:intergenic | 25.0% |
| ! | AACATAAATTCGCATACATT+TGG | + | chr5_1:43842637-43842656 | Msa0732010:CDS | 25.0% |
| ! | ACATAAATTCGCATACATTT+GGG | + | chr5_1:43842638-43842657 | Msa0732010:CDS | 25.0% |
| ! | TGAATTTTCCATACCAAATG+AGG | - | chr5_1:43842254-43842273 | None:intergenic | 30.0% |
| GGTTATGAAATCAGTTATGA+TGG | - | chr5_1:43842292-43842311 | None:intergenic | 30.0% | |
| !! | ACTTTTTATTGTTGGTGAGT+TGG | - | chr5_1:43842395-43842414 | None:intergenic | 30.0% |
| TTGATGCAAGTTTAAGGATT+TGG | - | chr5_1:43842494-43842513 | None:intergenic | 30.0% | |
| ATCCTTAAACTTGCATCAAA+AGG | + | chr5_1:43842495-43842514 | Msa0732010:CDS | 30.0% | |
| TGAAAATAACCATCACCAAA+AGG | - | chr5_1:43842825-43842844 | None:intergenic | 30.0% | |
| !!! | TTTGGTGATGGTTATTTTCA+AGG | + | chr5_1:43842825-43842844 | Msa0732010:CDS | 30.0% |
| TACAATGCAAATGGTGATAA+TGG | + | chr5_1:43842960-43842979 | Msa0732010:CDS | 30.0% | |
| ! | TGAATTTTCCATACCAAATG+AGG | - | chr5_1:43842254-43842273 | None:intergenic | 30.0% |
| GGTTATGAAATCAGTTATGA+TGG | - | chr5_1:43842292-43842311 | None:intergenic | 30.0% | |
| !! | ACTTTTTATTGTTGGTGAGT+TGG | - | chr5_1:43842395-43842414 | None:intergenic | 30.0% |
| TTGATGCAAGTTTAAGGATT+TGG | - | chr5_1:43842494-43842513 | None:intergenic | 30.0% | |
| ATCCTTAAACTTGCATCAAA+AGG | + | chr5_1:43842495-43842514 | Msa0732010:CDS | 30.0% | |
| TGAAAATAACCATCACCAAA+AGG | - | chr5_1:43842825-43842844 | None:intergenic | 30.0% | |
| !!! | TTTGGTGATGGTTATTTTCA+AGG | + | chr5_1:43842825-43842844 | Msa0732010:CDS | 30.0% |
| TACAATGCAAATGGTGATAA+TGG | + | chr5_1:43842960-43842979 | Msa0732010:CDS | 30.0% | |
| !! | TTTAAGTTGTTGGTCCGATT+CGG | - | chr5_1:43842184-43842203 | None:intergenic | 35.0% |
| AAATCTCAGTCAACCTCATT+TGG | + | chr5_1:43842238-43842257 | Msa0732010:CDS | 35.0% | |
| ATCAGTTATGATGGCTCTTT+GGG | - | chr5_1:43842283-43842302 | None:intergenic | 35.0% | |
| AATCAGTTATGATGGCTCTT+TGG | - | chr5_1:43842284-43842303 | None:intergenic | 35.0% | |
| CTCGATGAGAATTACTCTTT+AGG | + | chr5_1:43842450-43842469 | Msa0732010:CDS | 35.0% | |
| ! | GTCCTTTTGATGCAAGTTTA+AGG | - | chr5_1:43842500-43842519 | None:intergenic | 35.0% |
| ! | TTGACGGTTTTTGTTCAAGT+AGG | + | chr5_1:43842568-43842587 | Msa0732010:CDS | 35.0% |
| AAATTCGCATACATTTGGGT+TGG | + | chr5_1:43842642-43842661 | Msa0732010:CDS | 35.0% | |
| !! | CCATAAATTGGTTGGTGAAA+TGG | - | chr5_1:43842705-43842724 | None:intergenic | 35.0% |
| CCATTTCACCAACCAATTTA+TGG | + | chr5_1:43842702-43842721 | Msa0732010:CDS | 35.0% | |
| TTTGTGGACCATAAATTGGT+TGG | - | chr5_1:43842713-43842732 | None:intergenic | 35.0% | |
| !!! | AATGTTGCTAGTCTTTTAGC+TGG | + | chr5_1:43842786-43842805 | Msa0732010:CDS | 35.0% |
| !!! | ATGTTGCTAGTCTTTTAGCT+GGG | + | chr5_1:43842787-43842806 | Msa0732010:CDS | 35.0% |
| ATAACCATCACCAAAAGGAT+TGG | - | chr5_1:43842820-43842839 | None:intergenic | 35.0% | |
| ! | TGTACTGGTGTTTATGCTAA+AGG | + | chr5_1:43842882-43842901 | Msa0732010:CDS | 35.0% |
| !! | ATGCAAATGGTGATAATGGA+AGG | + | chr5_1:43842964-43842983 | Msa0732010:CDS | 35.0% |
| ! | GTAGAACAAACTGAGGTTTT+TGG | - | chr5_1:43843017-43843036 | None:intergenic | 35.0% |
| !! | TTTAAGTTGTTGGTCCGATT+CGG | - | chr5_1:43842184-43842203 | None:intergenic | 35.0% |
| AAATCTCAGTCAACCTCATT+TGG | + | chr5_1:43842238-43842257 | Msa0732010:CDS | 35.0% | |
| ATCAGTTATGATGGCTCTTT+GGG | - | chr5_1:43842283-43842302 | None:intergenic | 35.0% | |
| AATCAGTTATGATGGCTCTT+TGG | - | chr5_1:43842284-43842303 | None:intergenic | 35.0% | |
| CTCGATGAGAATTACTCTTT+AGG | + | chr5_1:43842450-43842469 | Msa0732010:CDS | 35.0% | |
| ! | GTCCTTTTGATGCAAGTTTA+AGG | - | chr5_1:43842500-43842519 | None:intergenic | 35.0% |
| ! | TTGACGGTTTTTGTTCAAGT+AGG | + | chr5_1:43842568-43842587 | Msa0732010:CDS | 35.0% |
| AAATTCGCATACATTTGGGT+TGG | + | chr5_1:43842642-43842661 | Msa0732010:CDS | 35.0% | |
| !! | CCATAAATTGGTTGGTGAAA+TGG | - | chr5_1:43842705-43842724 | None:intergenic | 35.0% |
| CCATTTCACCAACCAATTTA+TGG | + | chr5_1:43842702-43842721 | Msa0732010:CDS | 35.0% | |
| TTTGTGGACCATAAATTGGT+TGG | - | chr5_1:43842713-43842732 | None:intergenic | 35.0% | |
| !!! | AATGTTGCTAGTCTTTTAGC+TGG | + | chr5_1:43842786-43842805 | Msa0732010:CDS | 35.0% |
| !!! | ATGTTGCTAGTCTTTTAGCT+GGG | + | chr5_1:43842787-43842806 | Msa0732010:CDS | 35.0% |
| ATAACCATCACCAAAAGGAT+TGG | - | chr5_1:43842820-43842839 | None:intergenic | 35.0% | |
| ! | TGTACTGGTGTTTATGCTAA+AGG | + | chr5_1:43842882-43842901 | Msa0732010:CDS | 35.0% |
| !! | ATGCAAATGGTGATAATGGA+AGG | + | chr5_1:43842964-43842983 | Msa0732010:CDS | 35.0% |
| ! | GTAGAACAAACTGAGGTTTT+TGG | - | chr5_1:43843017-43843036 | None:intergenic | 35.0% |
| TGCTAGAAAACTCACCGAAT+CGG | + | chr5_1:43842167-43842186 | Msa0732010:CDS | 40.0% | |
| TCAGTCAACCTCATTTGGTA+TGG | + | chr5_1:43842243-43842262 | Msa0732010:CDS | 40.0% | |
| TCCTCGTTTAGTAGAAGAGA+GGG | - | chr5_1:43842316-43842335 | None:intergenic | 40.0% | |
| TTCCTCGTTTAGTAGAAGAG+AGG | - | chr5_1:43842317-43842336 | None:intergenic | 40.0% | |
| AGCTGTTAGAACAACGTTGA+TGG | - | chr5_1:43842535-43842554 | None:intergenic | 40.0% | |
| ! | GGTTTTTGTTCAAGTAGGTG+TGG | + | chr5_1:43842573-43842592 | Msa0732010:CDS | 40.0% |
| AATTCAGAGACACAATGTGC+TGG | + | chr5_1:43842666-43842685 | Msa0732010:CDS | 40.0% | |
| GCACTTTGTGGACCATAAAT+TGG | - | chr5_1:43842717-43842736 | None:intergenic | 40.0% | |
| !! | TCGTTATTTGGTGCAACCAA+AGG | - | chr5_1:43842741-43842760 | None:intergenic | 40.0% |
| GTTGCACCAAATAACGATGT+GGG | + | chr5_1:43842744-43842763 | Msa0732010:CDS | 40.0% | |
| TCAAGACCCACATCGTTATT+TGG | - | chr5_1:43842753-43842772 | None:intergenic | 40.0% | |
| AATAACGATGTGGGTCTTGA+CGG | + | chr5_1:43842753-43842772 | Msa0732010:CDS | 40.0% | |
| ! | GTAACCAATCCTTTTGGTGA+TGG | + | chr5_1:43842813-43842832 | Msa0732010:CDS | 40.0% |
| TATGCTAAAGGAGCTTATCC+TGG | + | chr5_1:43842894-43842913 | Msa0732010:CDS | 40.0% | |
| !!! | CACTTGTTTTGTCCACCAAA+AGG | - | chr5_1:43842932-43842951 | None:intergenic | 40.0% |
| !! | CTTTTGGTGGACAAAACAAG+TGG | + | chr5_1:43842930-43842949 | Msa0732010:CDS | 40.0% |
| !! | GTTTTTGGATCAACAATCGC+AGG | - | chr5_1:43843002-43843021 | None:intergenic | 40.0% |
| ! | AACCTCAGTTTGTTCTACGT+TGG | + | chr5_1:43843019-43843038 | Msa0732010:CDS | 40.0% |
| TACCAACGTAGAACAAACTG+AGG | - | chr5_1:43843024-43843043 | None:intergenic | 40.0% | |
| TGCTAGAAAACTCACCGAAT+CGG | + | chr5_1:43842167-43842186 | Msa0732010:CDS | 40.0% | |
| TCAGTCAACCTCATTTGGTA+TGG | + | chr5_1:43842243-43842262 | Msa0732010:CDS | 40.0% | |
| TCCTCGTTTAGTAGAAGAGA+GGG | - | chr5_1:43842316-43842335 | None:intergenic | 40.0% | |
| TTCCTCGTTTAGTAGAAGAG+AGG | - | chr5_1:43842317-43842336 | None:intergenic | 40.0% | |
| AGCTGTTAGAACAACGTTGA+TGG | - | chr5_1:43842535-43842554 | None:intergenic | 40.0% | |
| ! | GGTTTTTGTTCAAGTAGGTG+TGG | + | chr5_1:43842573-43842592 | Msa0732010:CDS | 40.0% |
| AATTCAGAGACACAATGTGC+TGG | + | chr5_1:43842666-43842685 | Msa0732010:CDS | 40.0% | |
| GCACTTTGTGGACCATAAAT+TGG | - | chr5_1:43842717-43842736 | None:intergenic | 40.0% | |
| !! | TCGTTATTTGGTGCAACCAA+AGG | - | chr5_1:43842741-43842760 | None:intergenic | 40.0% |
| GTTGCACCAAATAACGATGT+GGG | + | chr5_1:43842744-43842763 | Msa0732010:CDS | 40.0% | |
| TCAAGACCCACATCGTTATT+TGG | - | chr5_1:43842753-43842772 | None:intergenic | 40.0% | |
| AATAACGATGTGGGTCTTGA+CGG | + | chr5_1:43842753-43842772 | Msa0732010:CDS | 40.0% | |
| ! | GTAACCAATCCTTTTGGTGA+TGG | + | chr5_1:43842813-43842832 | Msa0732010:CDS | 40.0% |
| TATGCTAAAGGAGCTTATCC+TGG | + | chr5_1:43842894-43842913 | Msa0732010:CDS | 40.0% | |
| !!! | CACTTGTTTTGTCCACCAAA+AGG | - | chr5_1:43842932-43842951 | None:intergenic | 40.0% |
| !! | CTTTTGGTGGACAAAACAAG+TGG | + | chr5_1:43842930-43842949 | Msa0732010:CDS | 40.0% |
| !! | GTTTTTGGATCAACAATCGC+AGG | - | chr5_1:43843002-43843021 | None:intergenic | 40.0% |
| ! | AACCTCAGTTTGTTCTACGT+TGG | + | chr5_1:43843019-43843038 | Msa0732010:CDS | 40.0% |
| TACCAACGTAGAACAAACTG+AGG | - | chr5_1:43843024-43843043 | None:intergenic | 40.0% | |
| ! | AGATTTTGCCGGTGAGAAGA+GGG | - | chr5_1:43842224-43842243 | None:intergenic | 45.0% |
| ! | GAGGTTGACTGAGATTTTGC+CGG | - | chr5_1:43842235-43842254 | None:intergenic | 45.0% |
| ! | GTTATGATGGCTCTTTGGGA+TGG | - | chr5_1:43842279-43842298 | None:intergenic | 45.0% |
| TCGTTTAGTAGAAGAGAGGG+AGG | - | chr5_1:43842313-43842332 | None:intergenic | 45.0% | |
| TCCCTCTCTTCTACTAAACG+AGG | + | chr5_1:43842312-43842331 | Msa0732010:CDS | 45.0% | |
| ! | TTCAGTTGATTTCCACCACG+TGG | - | chr5_1:43842364-43842383 | None:intergenic | 45.0% |
| ! | GCTAAACTAGCTCTCTCACT+AGG | + | chr5_1:43842417-43842436 | Msa0732010:CDS | 45.0% |
| GCTGCTGATGTGTTAGTTGA+CGG | + | chr5_1:43842552-43842571 | Msa0732010:CDS | 45.0% | |
| TGCACCATAAGAAGAACCGT+GGG | - | chr5_1:43842601-43842620 | None:intergenic | 45.0% | |
| GGTTGCACCAAATAACGATG+TGG | + | chr5_1:43842743-43842762 | Msa0732010:CDS | 45.0% | |
| ! | GGGACTGTAACCAATCCTTT+TGG | + | chr5_1:43842807-43842826 | Msa0732010:CDS | 45.0% |
| AGGACCAAAAGAAGCTCCTT+TGG | + | chr5_1:43842845-43842864 | Msa0732010:CDS | 45.0% | |
| ! | GCTTCCAAAGGAGCTTCTTT+TGG | - | chr5_1:43842852-43842871 | None:intergenic | 45.0% |
| GAGCTTATCCTGGATATGCT+GGG | + | chr5_1:43842904-43842923 | Msa0732010:CDS | 45.0% | |
| AGCTTATCCTGGATATGCTG+GGG | + | chr5_1:43842905-43842924 | Msa0732010:CDS | 45.0% | |
| GGTGCTAGCTACAATGCAAA+TGG | + | chr5_1:43842951-43842970 | Msa0732010:CDS | 45.0% | |
| ! | AGATTTTGCCGGTGAGAAGA+GGG | - | chr5_1:43842224-43842243 | None:intergenic | 45.0% |
| ! | GAGGTTGACTGAGATTTTGC+CGG | - | chr5_1:43842235-43842254 | None:intergenic | 45.0% |
| ! | GTTATGATGGCTCTTTGGGA+TGG | - | chr5_1:43842279-43842298 | None:intergenic | 45.0% |
| TCGTTTAGTAGAAGAGAGGG+AGG | - | chr5_1:43842313-43842332 | None:intergenic | 45.0% | |
| TCCCTCTCTTCTACTAAACG+AGG | + | chr5_1:43842312-43842331 | Msa0732010:CDS | 45.0% | |
| ! | TTCAGTTGATTTCCACCACG+TGG | - | chr5_1:43842364-43842383 | None:intergenic | 45.0% |
| ! | GCTAAACTAGCTCTCTCACT+AGG | + | chr5_1:43842417-43842436 | Msa0732010:CDS | 45.0% |
| GCTGCTGATGTGTTAGTTGA+CGG | + | chr5_1:43842552-43842571 | Msa0732010:CDS | 45.0% | |
| TGCACCATAAGAAGAACCGT+GGG | - | chr5_1:43842601-43842620 | None:intergenic | 45.0% | |
| GGTTGCACCAAATAACGATG+TGG | + | chr5_1:43842743-43842762 | Msa0732010:CDS | 45.0% | |
| ! | GGGACTGTAACCAATCCTTT+TGG | + | chr5_1:43842807-43842826 | Msa0732010:CDS | 45.0% |
| AGGACCAAAAGAAGCTCCTT+TGG | + | chr5_1:43842845-43842864 | Msa0732010:CDS | 45.0% | |
| ! | GCTTCCAAAGGAGCTTCTTT+TGG | - | chr5_1:43842852-43842871 | None:intergenic | 45.0% |
| GAGCTTATCCTGGATATGCT+GGG | + | chr5_1:43842904-43842923 | Msa0732010:CDS | 45.0% | |
| AGCTTATCCTGGATATGCTG+GGG | + | chr5_1:43842905-43842924 | Msa0732010:CDS | 45.0% | |
| GGTGCTAGCTACAATGCAAA+TGG | + | chr5_1:43842951-43842970 | Msa0732010:CDS | 45.0% | |
| ! | GAGATTTTGCCGGTGAGAAG+AGG | - | chr5_1:43842225-43842244 | None:intergenic | 50.0% |
| TCAAGTAGGTGTGGAACCCA+CGG | + | chr5_1:43842582-43842601 | Msa0732010:CDS | 50.0% | |
| GGAACCCACGGTTCTTCTTA+TGG | + | chr5_1:43842594-43842613 | Msa0732010:CDS | 50.0% | |
| GTGCACCATAAGAAGAACCG+TGG | - | chr5_1:43842602-43842621 | None:intergenic | 50.0% | |
| TCTTATGGTGCACGCGTGAA+TGG | + | chr5_1:43842609-43842628 | Msa0732010:CDS | 50.0% | |
| ! | AATGTGCTGGTCAATGCGCA+TGG | + | chr5_1:43842679-43842698 | Msa0732010:CDS | 50.0% |
| TGGTCCACAAAGTGCACCTT+TGG | + | chr5_1:43842722-43842741 | Msa0732010:CDS | 50.0% | |
| ! | GCAACCAAAGGTGCACTTTG+TGG | - | chr5_1:43842729-43842748 | None:intergenic | 50.0% |
| ! | AGCTCCTTTGGAAGCTGCTT+CGG | + | chr5_1:43842857-43842876 | Msa0732010:CDS | 50.0% |
| GGAGCTTATCCTGGATATGC+TGG | + | chr5_1:43842903-43842922 | Msa0732010:CDS | 50.0% | |
| AAAAGGTCCCCAGCATATCC+AGG | - | chr5_1:43842915-43842934 | None:intergenic | 50.0% | |
| ! | TGGATATGCTGGGGACCTTT+TGG | + | chr5_1:43842914-43842933 | Msa0732010:CDS | 50.0% |
| ! | ATATGCTGGGGACCTTTTGG+TGG | + | chr5_1:43842917-43842936 | Msa0732010:CDS | 50.0% |
| ! | GAGATTTTGCCGGTGAGAAG+AGG | - | chr5_1:43842225-43842244 | None:intergenic | 50.0% |
| TCAAGTAGGTGTGGAACCCA+CGG | + | chr5_1:43842582-43842601 | Msa0732010:CDS | 50.0% | |
| GGAACCCACGGTTCTTCTTA+TGG | + | chr5_1:43842594-43842613 | Msa0732010:CDS | 50.0% | |
| GTGCACCATAAGAAGAACCG+TGG | - | chr5_1:43842602-43842621 | None:intergenic | 50.0% | |
| TCTTATGGTGCACGCGTGAA+TGG | + | chr5_1:43842609-43842628 | Msa0732010:CDS | 50.0% | |
| ! | AATGTGCTGGTCAATGCGCA+TGG | + | chr5_1:43842679-43842698 | Msa0732010:CDS | 50.0% |
| TGGTCCACAAAGTGCACCTT+TGG | + | chr5_1:43842722-43842741 | Msa0732010:CDS | 50.0% | |
| ! | GCAACCAAAGGTGCACTTTG+TGG | - | chr5_1:43842729-43842748 | None:intergenic | 50.0% |
| ! | AGCTCCTTTGGAAGCTGCTT+CGG | + | chr5_1:43842857-43842876 | Msa0732010:CDS | 50.0% |
| GGAGCTTATCCTGGATATGC+TGG | + | chr5_1:43842903-43842922 | Msa0732010:CDS | 50.0% | |
| AAAAGGTCCCCAGCATATCC+AGG | - | chr5_1:43842915-43842934 | None:intergenic | 50.0% | |
| ! | TGGATATGCTGGGGACCTTT+TGG | + | chr5_1:43842914-43842933 | Msa0732010:CDS | 50.0% |
| ! | ATATGCTGGGGACCTTTTGG+TGG | + | chr5_1:43842917-43842936 | Msa0732010:CDS | 50.0% |
| CACAAAGGCCCTCTTCTCAC+CGG | + | chr5_1:43842213-43842232 | Msa0732010:CDS | 55.0% | |
| GGCAACTGATGGTTGTGACG+TGG | - | chr5_1:43842343-43842362 | None:intergenic | 55.0% | |
| CACAACCATCAGTTGCCACG+TGG | + | chr5_1:43842346-43842365 | Msa0732010:CDS | 55.0% | |
| AACCATCAGTTGCCACGTGG+TGG | + | chr5_1:43842349-43842368 | Msa0732010:CDS | 55.0% | |
| TTCCACCACGTGGCAACTGA+TGG | - | chr5_1:43842354-43842373 | None:intergenic | 55.0% | |
| CGATGTGGGTCTTGACGGAA+TGG | + | chr5_1:43842758-43842777 | Msa0732010:CDS | 55.0% | |
| CAAGCCGAAGCAGCTTCCAA+AGG | - | chr5_1:43842864-43842883 | None:intergenic | 55.0% | |
| ! | GAAGCTGCTTCGGCTTGTAC+TGG | + | chr5_1:43842867-43842886 | Msa0732010:CDS | 55.0% |
| CACAAAGGCCCTCTTCTCAC+CGG | + | chr5_1:43842213-43842232 | Msa0732010:CDS | 55.0% | |
| GGCAACTGATGGTTGTGACG+TGG | - | chr5_1:43842343-43842362 | None:intergenic | 55.0% | |
| CACAACCATCAGTTGCCACG+TGG | + | chr5_1:43842346-43842365 | Msa0732010:CDS | 55.0% | |
| AACCATCAGTTGCCACGTGG+TGG | + | chr5_1:43842349-43842368 | Msa0732010:CDS | 55.0% | |
| TTCCACCACGTGGCAACTGA+TGG | - | chr5_1:43842354-43842373 | None:intergenic | 55.0% | |
| CGATGTGGGTCTTGACGGAA+TGG | + | chr5_1:43842758-43842777 | Msa0732010:CDS | 55.0% | |
| CAAGCCGAAGCAGCTTCCAA+AGG | - | chr5_1:43842864-43842883 | None:intergenic | 55.0% | |
| ! | GAAGCTGCTTCGGCTTGTAC+TGG | + | chr5_1:43842867-43842886 | Msa0732010:CDS | 55.0% |
| CGGTGAGAAGAGGGCCTTTG+TGG | - | chr5_1:43842215-43842234 | None:intergenic | 60.0% | |
| CGGTGAGAAGAGGGCCTTTG+TGG | - | chr5_1:43842215-43842234 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 43842096 | 43843049 | 43842096 | ID=Msa0732010;Name=Msa0732010 |
| chr5_1 | mRNA | 43842096 | 43843049 | 43842096 | ID=Msa0732010-mRNA-1;Parent=Msa0732010;Name=Msa0732010-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|-1|0|1|-1|1|1|0|317 |
| chr5_1 | exon | 43842096 | 43843049 | 43842096 | ID=Msa0732010-mRNA-1:exon:12470;Parent=Msa0732010-mRNA-1 |
| chr5_1 | CDS | 43842096 | 43843049 | 43842096 | ID=Msa0732010-mRNA-1:cds;Parent=Msa0732010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
