Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732160 | XP_003615193.2 | 74.691 | 324 | 42 | 5 | 1 | 308 | 1 | 300 | 1.30e-165 | 472 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732160 | sp|Q9C7T4|BH096_ARATH | 47.761 | 335 | 124 | 12 | 1 | 303 | 1 | 316 | 5.72e-82 | 253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732160 | G7KAJ7 | 74.691 | 324 | 42 | 5 | 1 | 308 | 1 | 300 | 6.23e-166 | 472 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0732160 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0732160 | Msa0773240 | 0.869768 | 2.416890e-66 | -8.615850e-47 |
| Msa0732160 | Msa0810550 | 0.811837 | 5.731740e-51 | -8.615850e-47 |
| Msa0732160 | Msa0855790 | 0.852100 | 5.758913e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732160 | MtrunA17_Chr5g0426851 | 74.691 | 324 | 42 | 5 | 1 | 308 | 1 | 300 | 1.20e-169 | 472 |
| Msa0732160 | MtrunA17_Chr3g0132471 | 52.568 | 331 | 117 | 11 | 1 | 305 | 1 | 317 | 4.12e-96 | 286 |
| Msa0732160 | MtrunA17_Chr7g0273081 | 44.025 | 318 | 145 | 12 | 1 | 305 | 14 | 311 | 1.65e-71 | 223 |
| Msa0732160 | MtrunA17_Chr8g0366551 | 52.113 | 213 | 94 | 5 | 98 | 308 | 114 | 320 | 1.01e-63 | 204 |
| Msa0732160 | MtrunA17_Chr1g0191571 | 42.378 | 328 | 156 | 10 | 1 | 303 | 14 | 333 | 4.40e-63 | 202 |
| Msa0732160 | MtrunA17_Chr8g0345871 | 43.689 | 206 | 92 | 4 | 97 | 296 | 170 | 357 | 8.53e-44 | 153 |
| Msa0732160 | MtrunA17_Chr0c01g0489461 | 40.278 | 216 | 116 | 6 | 90 | 296 | 177 | 388 | 3.30e-41 | 147 |
| Msa0732160 | MtrunA17_Chr2g0287761 | 38.636 | 176 | 103 | 3 | 108 | 282 | 1 | 172 | 1.23e-32 | 119 |
| Msa0732160 | MtrunA17_Chr1g0158941 | 30.072 | 276 | 160 | 6 | 46 | 301 | 27 | 289 | 4.95e-27 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732160 | AT1G72210.1 | 47.761 | 335 | 124 | 12 | 1 | 303 | 1 | 316 | 5.82e-83 | 253 |
| Msa0732160 | AT1G72210.2 | 46.104 | 308 | 116 | 11 | 1 | 276 | 1 | 290 | 6.57e-71 | 222 |
| Msa0732160 | AT1G22490.1 | 44.969 | 318 | 145 | 11 | 1 | 303 | 1 | 303 | 3.16e-67 | 213 |
| Msa0732160 | AT1G22490.2 | 43.003 | 293 | 134 | 9 | 1 | 276 | 1 | 277 | 1.47e-54 | 181 |
| Msa0732160 | AT5G46690.1 | 44.958 | 238 | 86 | 9 | 98 | 303 | 78 | 302 | 9.90e-43 | 150 |
| Msa0732160 | AT5G65320.1 | 39.614 | 207 | 109 | 3 | 104 | 303 | 98 | 295 | 5.06e-40 | 142 |
| Msa0732160 | AT4G01460.1 | 38.967 | 213 | 112 | 4 | 98 | 303 | 105 | 306 | 6.07e-40 | 142 |
| Msa0732160 | AT4G01460.2 | 38.967 | 213 | 112 | 4 | 98 | 303 | 105 | 306 | 6.07e-40 | 142 |
| Msa0732160 | AT2G46810.2 | 39.409 | 203 | 100 | 7 | 99 | 296 | 112 | 296 | 2.69e-37 | 135 |
| Msa0732160 | AT3G24140.2 | 38.462 | 221 | 119 | 4 | 88 | 296 | 177 | 392 | 3.09e-37 | 137 |
| Msa0732160 | AT3G24140.1 | 38.462 | 221 | 119 | 4 | 88 | 296 | 177 | 392 | 3.57e-37 | 137 |
| Msa0732160 | AT2G46810.3 | 39.409 | 203 | 100 | 7 | 99 | 296 | 172 | 356 | 7.58e-37 | 135 |
| Msa0732160 | AT2G46810.1 | 39.409 | 203 | 100 | 7 | 99 | 296 | 184 | 368 | 8.00e-37 | 135 |
| Msa0732160 | AT3G61950.2 | 37.500 | 208 | 100 | 7 | 97 | 296 | 116 | 301 | 4.41e-36 | 132 |
| Msa0732160 | AT5G46690.2 | 44.550 | 211 | 73 | 8 | 98 | 276 | 78 | 276 | 1.24e-35 | 130 |
| Msa0732160 | AT3G61950.1 | 37.500 | 208 | 100 | 7 | 97 | 296 | 167 | 352 | 1.97e-35 | 131 |
| Msa0732160 | AT3G61950.6 | 38.506 | 174 | 79 | 5 | 97 | 263 | 116 | 268 | 4.09e-34 | 126 |
| Msa0732160 | AT5G65320.2 | 39.572 | 187 | 97 | 3 | 104 | 283 | 98 | 275 | 1.76e-33 | 124 |
| Msa0732160 | AT3G61950.3 | 38.506 | 174 | 79 | 5 | 97 | 263 | 167 | 319 | 2.33e-33 | 125 |
| Msa0732160 | AT2G46810.4 | 41.420 | 169 | 78 | 5 | 99 | 263 | 112 | 263 | 4.09e-33 | 124 |
| Msa0732160 | AT3G06120.1 | 35.263 | 190 | 97 | 6 | 108 | 282 | 1 | 179 | 1.33e-27 | 107 |
| Msa0732160 | AT5G53210.1 | 58.730 | 63 | 25 | 1 | 106 | 167 | 100 | 162 | 4.14e-18 | 84.0 |
| Msa0732160 | AT5G53210.2 | 58.730 | 63 | 25 | 1 | 106 | 167 | 100 | 162 | 4.69e-18 | 84.0 |
Find 63 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATAATCTCCTTTCAAAT+TGG | 0.176896 | 5_1:-44221306 | Msa0732160:CDS |
| GTGGGAAGAGTGGTAGTTTC+TGG | 0.232175 | 5_1:+44221274 | None:intergenic |
| CATGTTTCCTCAATACTCTA+TGG | 0.258942 | 5_1:-44220588 | Msa0732160:CDS |
| TGATGCCTCCTTATGCAAAA+AGG | 0.262112 | 5_1:-44221081 | Msa0732160:CDS |
| CATCCACACTGGAAACATTA+AGG | 0.344730 | 5_1:+44220387 | None:intergenic |
| TCATAATCTCCTTTCAAATT+GGG | 0.357599 | 5_1:-44221305 | Msa0732160:CDS |
| CCATGCCACGTGACTGATTA+TGG | 0.383936 | 5_1:+44220531 | None:intergenic |
| TGAGCTATCACGTAGAATTC+AGG | 0.385207 | 5_1:-44219521 | Msa0732160:CDS |
| GTTGTTGGGATTCAAAATCT+TGG | 0.395613 | 5_1:-44220425 | Msa0732160:CDS |
| ACTTGGAGTGGTTTCAACTA+AGG | 0.406246 | 5_1:+44221405 | None:intergenic |
| ATGTTTCCTCAATACTCTAT+GGG | 0.408818 | 5_1:-44220587 | Msa0732160:CDS |
| TGGGAAGAGTGGTAGTTTCT+GGG | 0.409146 | 5_1:+44221275 | None:intergenic |
| AGGTCAAGTAATGGCCTTAG+AGG | 0.417204 | 5_1:-44221482 | None:intergenic |
| CGGTGCAATTAACTTCTTGA+AGG | 0.418841 | 5_1:-44220723 | Msa0732160:CDS |
| CCACTCCAAGTGAAGGATCT+TGG | 0.429067 | 5_1:-44221393 | Msa0732160:CDS |
| CAGGTTATGAAGATGGTTGT+TGG | 0.441455 | 5_1:-44220440 | Msa0732160:CDS |
| AGGTTATGAAGATGGTTGTT+GGG | 0.442208 | 5_1:-44220439 | Msa0732160:CDS |
| CCAAGATCCTTCACTTGGAG+TGG | 0.454095 | 5_1:+44221393 | None:intergenic |
| GTCGTCGTTTGCTCTGACGA+GGG | 0.455391 | 5_1:+44221218 | None:intergenic |
| CTGTAAATCAATGGATATTG+TGG | 0.467398 | 5_1:+44221448 | None:intergenic |
| GGCAGATATAGAAGTGACTT+TGG | 0.474900 | 5_1:-44220510 | Msa0732160:CDS |
| TGGCTCCAAGATCCTTCACT+TGG | 0.493996 | 5_1:+44221388 | None:intergenic |
| TGTTGTGGTGGATGCAAAAG+TGG | 0.496117 | 5_1:+44221249 | None:intergenic |
| TTTGCTCTGACGAGGGGCTG+TGG | 0.500724 | 5_1:+44221225 | None:intergenic |
| AATTAATAATAGGTAGAAGA+AGG | 0.501607 | 5_1:-44219589 | Msa0732160:intron |
| CGTGACTGATTATGGTTGGT+AGG | 0.510486 | 5_1:+44220539 | None:intergenic |
| CTGCAATGTGAGTCATCCTC+TGG | 0.511278 | 5_1:+44221158 | None:intergenic |
| TCTTTGCAACTGTAAATCAA+TGG | 0.515148 | 5_1:+44221439 | None:intergenic |
| CCTTGTCTCGGTTAGTGCTA+AGG | 0.528899 | 5_1:-44220357 | Msa0732160:intron |
| AAGGAGGCATCAAGGATTTG+AGG | 0.530586 | 5_1:+44221092 | None:intergenic |
| TTGTTTGGCAACCGTAGTTG+TGG | 0.536558 | 5_1:+44221368 | None:intergenic |
| GGTGATCAAGCATCAATAGT+TGG | 0.540135 | 5_1:-44220746 | Msa0732160:CDS |
| ATTAATAATAGGTAGAAGAA+GGG | 0.541316 | 5_1:-44219588 | Msa0732160:intron |
| AAAAGTGGAAGTGGGAAGAG+TGG | 0.541468 | 5_1:+44221264 | None:intergenic |
| CAACTACTGAACACAGTGGA+TGG | 0.542124 | 5_1:-44219562 | Msa0732160:CDS |
| AGGGGCTGTGGTTGTTGTGG+TGG | 0.542969 | 5_1:+44221237 | None:intergenic |
| ACGAGGGGCTGTGGTTGTTG+TGG | 0.561823 | 5_1:+44221234 | None:intergenic |
| GGTGGATGCAAAAGTGGAAG+TGG | 0.562310 | 5_1:+44221255 | None:intergenic |
| GGGAAGAGTGGTAGTTTCTG+GGG | 0.562790 | 5_1:+44221276 | None:intergenic |
| CCATAATCAGTCACGTGGCA+TGG | 0.565688 | 5_1:-44220531 | Msa0732160:CDS |
| CGTCGTCGTTTGCTCTGACG+AGG | 0.567064 | 5_1:+44221217 | None:intergenic |
| ACAAGGACAGGTTATGAAGA+TGG | 0.569307 | 5_1:-44220447 | Msa0732160:CDS |
| ACATAATCTACAATTCATGA+AGG | 0.570662 | 5_1:-44220693 | Msa0732160:CDS |
| GTGACTGATTATGGTTGGTA+GGG | 0.576193 | 5_1:+44220540 | None:intergenic |
| GGGAAGAATCCCAATTTGAA+AGG | 0.583370 | 5_1:+44221296 | None:intergenic |
| GTTGAAACCACTCCAAGTGA+AGG | 0.604132 | 5_1:-44221400 | Msa0732160:CDS |
| GGGTAGCACGTGATGTTCTG+AGG | 0.605537 | 5_1:+44220560 | None:intergenic |
| TCGTCGTTTGCTCTGACGAG+GGG | 0.613990 | 5_1:+44221219 | None:intergenic |
| CCTTAGCACTAACCGAGACA+AGG | 0.614421 | 5_1:+44220357 | None:intergenic |
| GGATGATAATGTCCTTGTCT+CGG | 0.618077 | 5_1:-44220369 | Msa0732160:CDS |
| GGTGCACCCATAGAGTATTG+AGG | 0.621516 | 5_1:+44220581 | None:intergenic |
| GTGGATGCAAAAGTGGAAGT+GGG | 0.621519 | 5_1:+44221256 | None:intergenic |
| GGATCTTGGAGCCACAACTA+CGG | 0.621648 | 5_1:-44221379 | Msa0732160:CDS |
| ACACCTTAATGTTTCCAGTG+TGG | 0.628319 | 5_1:-44220390 | Msa0732160:CDS |
| AGGAGGAAATCGAGAGCCAG+AGG | 0.636953 | 5_1:-44221174 | Msa0732160:CDS |
| GCTATCACGTAGAATTCAGG+TGG | 0.646782 | 5_1:-44219518 | Msa0732160:CDS |
| CATAATCTACAATTCATGAA+GGG | 0.647917 | 5_1:-44220692 | Msa0732160:CDS |
| AAGGACATTATCATCCACAC+TGG | 0.650900 | 5_1:+44220376 | None:intergenic |
| GCCACGTGACTGATTATGGT+TGG | 0.656195 | 5_1:+44220535 | None:intergenic |
| GATCAAGCATCAATAGTTGG+CGG | 0.664504 | 5_1:-44220743 | Msa0732160:CDS |
| ACCAACCATAATCAGTCACG+TGG | 0.705729 | 5_1:-44220536 | Msa0732160:CDS |
| TCAAGGATTTGAGGACATCG+AGG | 0.738437 | 5_1:+44221101 | None:intergenic |
| GTGTCAACTACTGAACACAG+TGG | 0.768612 | 5_1:-44219566 | Msa0732160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGAAAATTTTGATTTTTTT+TGG | + | chr5_1:44220174-44220193 | None:intergenic | 10.0% |
| !! | AAAAATTATTCACTATTAAA+CGG | - | chr5_1:44220841-44220860 | Msa0732160:intron | 10.0% |
| !! | AACTTTATAAATATAATATG+TGG | - | chr5_1:44220871-44220890 | Msa0732160:intron | 10.0% |
| !!! | TTTATTTTTTTTTTGACAAA+AGG | - | chr5_1:44221339-44221358 | Msa0732160:CDS | 10.0% |
| !! | TATATATTGGAATTAATAAT+AGG | - | chr5_1:44221371-44221390 | Msa0732160:CDS | 10.0% |
| !!! | TTGAAAATTTTGATTTTTTT+TGG | + | chr5_1:44220174-44220193 | None:intergenic | 10.0% |
| !! | AAAAATTATTCACTATTAAA+CGG | - | chr5_1:44220841-44220860 | Msa0732160:intron | 10.0% |
| !! | AACTTTATAAATATAATATG+TGG | - | chr5_1:44220871-44220890 | Msa0732160:intron | 10.0% |
| !!! | TTTATTTTTTTTTTGACAAA+AGG | - | chr5_1:44221339-44221358 | Msa0732160:CDS | 10.0% |
| !! | TATATATTGGAATTAATAAT+AGG | - | chr5_1:44221371-44221390 | Msa0732160:CDS | 10.0% |
| !! | TACAATTTAAACAAGTAATA+AGG | + | chr5_1:44221287-44221306 | None:intergenic | 15.0% |
| !! | AAGGTTACTAATTTATATAT+TGG | - | chr5_1:44221358-44221377 | Msa0732160:CDS | 15.0% |
| !! | TACAATTTAAACAAGTAATA+AGG | + | chr5_1:44221287-44221306 | None:intergenic | 15.0% |
| !! | AAGGTTACTAATTTATATAT+TGG | - | chr5_1:44221358-44221377 | Msa0732160:CDS | 15.0% |
| !!! | TGTGTTATAAAATTGTTGTT+GGG | + | chr5_1:44220118-44220137 | None:intergenic | 20.0% |
| !! | ATGTGTTATAAAATTGTTGT+TGG | + | chr5_1:44220119-44220138 | None:intergenic | 20.0% |
| !!! | ATTTTTGTTGAGAAAATTGT+TGG | + | chr5_1:44220827-44220846 | None:intergenic | 20.0% |
| !! | AAATTCAATACTATACCATT+TGG | - | chr5_1:44220925-44220944 | Msa0732160:intron | 20.0% |
| !!! | GAAAATAGTGAAAAACATTT+TGG | - | chr5_1:44221309-44221328 | Msa0732160:CDS | 20.0% |
| !! | AATTAATAATAGGTAGAAGA+AGG | - | chr5_1:44221381-44221400 | Msa0732160:CDS | 20.0% |
| !! | ATTAATAATAGGTAGAAGAA+GGG | - | chr5_1:44221382-44221401 | Msa0732160:CDS | 20.0% |
| !!! | TGTGTTATAAAATTGTTGTT+GGG | + | chr5_1:44220118-44220137 | None:intergenic | 20.0% |
| !! | ATGTGTTATAAAATTGTTGT+TGG | + | chr5_1:44220119-44220138 | None:intergenic | 20.0% |
| !!! | ATTTTTGTTGAGAAAATTGT+TGG | + | chr5_1:44220827-44220846 | None:intergenic | 20.0% |
| !! | AAATTCAATACTATACCATT+TGG | - | chr5_1:44220925-44220944 | Msa0732160:intron | 20.0% |
| !!! | GAAAATAGTGAAAAACATTT+TGG | - | chr5_1:44221309-44221328 | Msa0732160:CDS | 20.0% |
| !! | AATTAATAATAGGTAGAAGA+AGG | - | chr5_1:44221381-44221400 | Msa0732160:CDS | 20.0% |
| !! | ATTAATAATAGGTAGAAGAA+GGG | - | chr5_1:44221382-44221401 | Msa0732160:CDS | 20.0% |
| ! | ATCATAATCTCCTTTCAAAT+TGG | - | chr5_1:44219664-44219683 | Msa0732160:intron | 25.0% |
| ! | TCATAATCTCCTTTCAAATT+GGG | - | chr5_1:44219665-44219684 | Msa0732160:intron | 25.0% |
| !! | AAAATTACCCTTTTTGCATA+AGG | + | chr5_1:44219900-44219919 | None:intergenic | 25.0% |
| ! | TGTTTCATAAACACAATTGT+TGG | - | chr5_1:44219969-44219988 | Msa0732160:intron | 25.0% |
| !! | GTGTTATAAAATTGTTGTTG+GGG | + | chr5_1:44220117-44220136 | None:intergenic | 25.0% |
| ! | ACATAATCTACAATTCATGA+AGG | - | chr5_1:44220277-44220296 | Msa0732160:intron | 25.0% |
| ! | CATAATCTACAATTCATGAA+GGG | - | chr5_1:44220278-44220297 | Msa0732160:intron | 25.0% |
| ! | AACATGAAAAACTCAGTAAA+AGG | + | chr5_1:44220368-44220387 | None:intergenic | 25.0% |
| ! | ATAATGTTGAAAAAACGACA+AGG | - | chr5_1:44220506-44220525 | Msa0732160:CDS | 25.0% |
| ! | TATAAAATTCACTGTCAACA+AGG | - | chr5_1:44220691-44220710 | Msa0732160:CDS | 25.0% |
| ! | ATAAAATTCACTGTCAACAA+GGG | - | chr5_1:44220692-44220711 | Msa0732160:CDS | 25.0% |
| ! | AATCAAGTGATAAAAAGACT+TGG | - | chr5_1:44220718-44220737 | Msa0732160:CDS | 25.0% |
| ! | CTTGTGTAATATTTACCAAA+TGG | + | chr5_1:44220943-44220962 | None:intergenic | 25.0% |
| ! | ATAAGGTTTAAAAATTGACG+TGG | + | chr5_1:44221270-44221289 | None:intergenic | 25.0% |
| ! | ATCATAATCTCCTTTCAAAT+TGG | - | chr5_1:44219664-44219683 | Msa0732160:intron | 25.0% |
| ! | TCATAATCTCCTTTCAAATT+GGG | - | chr5_1:44219665-44219684 | Msa0732160:intron | 25.0% |
| !! | AAAATTACCCTTTTTGCATA+AGG | + | chr5_1:44219900-44219919 | None:intergenic | 25.0% |
| ! | TGTTTCATAAACACAATTGT+TGG | - | chr5_1:44219969-44219988 | Msa0732160:intron | 25.0% |
| !! | GTGTTATAAAATTGTTGTTG+GGG | + | chr5_1:44220117-44220136 | None:intergenic | 25.0% |
| ! | ACATAATCTACAATTCATGA+AGG | - | chr5_1:44220277-44220296 | Msa0732160:intron | 25.0% |
| ! | CATAATCTACAATTCATGAA+GGG | - | chr5_1:44220278-44220297 | Msa0732160:intron | 25.0% |
| ! | AACATGAAAAACTCAGTAAA+AGG | + | chr5_1:44220368-44220387 | None:intergenic | 25.0% |
| ! | ATAATGTTGAAAAAACGACA+AGG | - | chr5_1:44220506-44220525 | Msa0732160:CDS | 25.0% |
| ! | TATAAAATTCACTGTCAACA+AGG | - | chr5_1:44220691-44220710 | Msa0732160:CDS | 25.0% |
| ! | ATAAAATTCACTGTCAACAA+GGG | - | chr5_1:44220692-44220711 | Msa0732160:CDS | 25.0% |
| ! | AATCAAGTGATAAAAAGACT+TGG | - | chr5_1:44220718-44220737 | Msa0732160:CDS | 25.0% |
| ! | CTTGTGTAATATTTACCAAA+TGG | + | chr5_1:44220943-44220962 | None:intergenic | 25.0% |
| ! | ATAAGGTTTAAAAATTGACG+TGG | + | chr5_1:44221270-44221289 | None:intergenic | 25.0% |
| CTGTAAATCAATGGATATTG+TGG | + | chr5_1:44219525-44219544 | None:intergenic | 30.0% | |
| TCTTTGCAACTGTAAATCAA+TGG | + | chr5_1:44219534-44219553 | None:intergenic | 30.0% | |
| TGAACCACATGTAGAATTTA+GGG | + | chr5_1:44220197-44220216 | None:intergenic | 30.0% | |
| TTGAACCACATGTAGAATTT+AGG | + | chr5_1:44220198-44220217 | None:intergenic | 30.0% | |
| ATGAAAAACTCAGTAAAAGG+TGG | + | chr5_1:44220365-44220384 | None:intergenic | 30.0% | |
| ATGTTTCCTCAATACTCTAT+GGG | - | chr5_1:44220383-44220402 | Msa0732160:CDS | 30.0% | |
| CTCGTTAAATAAATGATGAG+TGG | - | chr5_1:44220742-44220761 | Msa0732160:CDS | 30.0% | |
| TAGAGAAATATTCGATTGAG+AGG | - | chr5_1:44220784-44220803 | Msa0732160:intron | 30.0% | |
| AGAGAAATATTCGATTGAGA+GGG | - | chr5_1:44220785-44220804 | Msa0732160:intron | 30.0% | |
| !! | ATCTACTCTAAAATCACAGA+TGG | + | chr5_1:44221079-44221098 | None:intergenic | 30.0% |
| CTGTAAATCAATGGATATTG+TGG | + | chr5_1:44219525-44219544 | None:intergenic | 30.0% | |
| TCTTTGCAACTGTAAATCAA+TGG | + | chr5_1:44219534-44219553 | None:intergenic | 30.0% | |
| TGAACCACATGTAGAATTTA+GGG | + | chr5_1:44220197-44220216 | None:intergenic | 30.0% | |
| TTGAACCACATGTAGAATTT+AGG | + | chr5_1:44220198-44220217 | None:intergenic | 30.0% | |
| ATGAAAAACTCAGTAAAAGG+TGG | + | chr5_1:44220365-44220384 | None:intergenic | 30.0% | |
| ATGTTTCCTCAATACTCTAT+GGG | - | chr5_1:44220383-44220402 | Msa0732160:CDS | 30.0% | |
| CTCGTTAAATAAATGATGAG+TGG | - | chr5_1:44220742-44220761 | Msa0732160:CDS | 30.0% | |
| TAGAGAAATATTCGATTGAG+AGG | - | chr5_1:44220784-44220803 | Msa0732160:intron | 30.0% | |
| AGAGAAATATTCGATTGAGA+GGG | - | chr5_1:44220785-44220804 | Msa0732160:intron | 30.0% | |
| !! | ATCTACTCTAAAATCACAGA+TGG | + | chr5_1:44221079-44221098 | None:intergenic | 30.0% |
| TGGAAAAACTATAGCCTCTA+AGG | + | chr5_1:44219505-44219524 | None:intergenic | 35.0% | |
| ! | GATCTTCTTCGTCTTTTGTT+TGG | + | chr5_1:44219620-44219639 | None:intergenic | 35.0% |
| CACTGTGAATGCAAAAAATG+AGG | - | chr5_1:44219776-44219795 | Msa0732160:intron | 35.0% | |
| TGTGAATGCAAAAAATGAGG+AGG | - | chr5_1:44219779-44219798 | Msa0732160:intron | 35.0% | |
| ! | ATTACCCTTTTTGCATAAGG+AGG | + | chr5_1:44219897-44219916 | None:intergenic | 35.0% |
| !!! | CCTCAATTTTTAGTCGATCT+GGG | + | chr5_1:44220018-44220037 | None:intergenic | 35.0% |
| !!! | TCCTCAATTTTTAGTCGATC+TGG | + | chr5_1:44220019-44220038 | None:intergenic | 35.0% |
| ! | ACTTTGATGCCTTATGGTTT+TGG | - | chr5_1:44220040-44220059 | Msa0732160:intron | 35.0% |
| ! | CTTTGATGCCTTATGGTTTT+GGG | - | chr5_1:44220041-44220060 | Msa0732160:intron | 35.0% |
| TCAACCCTAAATTCTACATG+TGG | - | chr5_1:44220190-44220209 | Msa0732160:intron | 35.0% | |
| TCTACATGTGGTTCAAAAAC+AGG | - | chr5_1:44220202-44220221 | Msa0732160:intron | 35.0% | |
| CTACATGTGGTTCAAAAACA+GGG | - | chr5_1:44220203-44220222 | Msa0732160:intron | 35.0% | |
| CATGTTTCCTCAATACTCTA+TGG | - | chr5_1:44220382-44220401 | Msa0732160:CDS | 35.0% | |
| AGGTTATGAAGATGGTTGTT+GGG | - | chr5_1:44220531-44220550 | Msa0732160:CDS | 35.0% | |
| GTTGTTGGGATTCAAAATCT+TGG | - | chr5_1:44220545-44220564 | Msa0732160:CDS | 35.0% | |
| GAGAAATATTCGATTGAGAG+GGG | - | chr5_1:44220786-44220805 | Msa0732160:intron | 35.0% | |
| AAAATTGTTGGAGACATGGT+AGG | + | chr5_1:44220815-44220834 | None:intergenic | 35.0% | |
| TGAGAAAATTGTTGGAGACA+TGG | + | chr5_1:44220819-44220838 | None:intergenic | 35.0% | |
| !! | ATTTGCTGTTTGCATCATGA+CGG | - | chr5_1:44221187-44221206 | Msa0732160:CDS | 35.0% |
| AACAGAGAATAAGGTGAACT+AGG | - | chr5_1:44221220-44221239 | Msa0732160:CDS | 35.0% | |
| ACAGAGAATAAGGTGAACTA+GGG | - | chr5_1:44221221-44221240 | Msa0732160:CDS | 35.0% | |
| ! | AAAAATTGACGTGGAGGTTT+TGG | + | chr5_1:44221261-44221280 | None:intergenic | 35.0% |
| AGGTTTAAAAATTGACGTGG+AGG | + | chr5_1:44221267-44221286 | None:intergenic | 35.0% | |
| TGGAAAAACTATAGCCTCTA+AGG | + | chr5_1:44219505-44219524 | None:intergenic | 35.0% | |
| ! | GATCTTCTTCGTCTTTTGTT+TGG | + | chr5_1:44219620-44219639 | None:intergenic | 35.0% |
| CACTGTGAATGCAAAAAATG+AGG | - | chr5_1:44219776-44219795 | Msa0732160:intron | 35.0% | |
| TGTGAATGCAAAAAATGAGG+AGG | - | chr5_1:44219779-44219798 | Msa0732160:intron | 35.0% | |
| ! | ATTACCCTTTTTGCATAAGG+AGG | + | chr5_1:44219897-44219916 | None:intergenic | 35.0% |
| !!! | CCTCAATTTTTAGTCGATCT+GGG | + | chr5_1:44220018-44220037 | None:intergenic | 35.0% |
| !!! | TCCTCAATTTTTAGTCGATC+TGG | + | chr5_1:44220019-44220038 | None:intergenic | 35.0% |
| ! | ACTTTGATGCCTTATGGTTT+TGG | - | chr5_1:44220040-44220059 | Msa0732160:intron | 35.0% |
| ! | CTTTGATGCCTTATGGTTTT+GGG | - | chr5_1:44220041-44220060 | Msa0732160:intron | 35.0% |
| TCAACCCTAAATTCTACATG+TGG | - | chr5_1:44220190-44220209 | Msa0732160:intron | 35.0% | |
| TCTACATGTGGTTCAAAAAC+AGG | - | chr5_1:44220202-44220221 | Msa0732160:intron | 35.0% | |
| CTACATGTGGTTCAAAAACA+GGG | - | chr5_1:44220203-44220222 | Msa0732160:intron | 35.0% | |
| CATGTTTCCTCAATACTCTA+TGG | - | chr5_1:44220382-44220401 | Msa0732160:CDS | 35.0% | |
| AGGTTATGAAGATGGTTGTT+GGG | - | chr5_1:44220531-44220550 | Msa0732160:CDS | 35.0% | |
| GTTGTTGGGATTCAAAATCT+TGG | - | chr5_1:44220545-44220564 | Msa0732160:CDS | 35.0% | |
| GAGAAATATTCGATTGAGAG+GGG | - | chr5_1:44220786-44220805 | Msa0732160:intron | 35.0% | |
| AAAATTGTTGGAGACATGGT+AGG | + | chr5_1:44220815-44220834 | None:intergenic | 35.0% | |
| TGAGAAAATTGTTGGAGACA+TGG | + | chr5_1:44220819-44220838 | None:intergenic | 35.0% | |
| !! | ATTTGCTGTTTGCATCATGA+CGG | - | chr5_1:44221187-44221206 | Msa0732160:CDS | 35.0% |
| AACAGAGAATAAGGTGAACT+AGG | - | chr5_1:44221220-44221239 | Msa0732160:CDS | 35.0% | |
| ACAGAGAATAAGGTGAACTA+GGG | - | chr5_1:44221221-44221240 | Msa0732160:CDS | 35.0% | |
| ! | AAAAATTGACGTGGAGGTTT+TGG | + | chr5_1:44221261-44221280 | None:intergenic | 35.0% |
| AGGTTTAAAAATTGACGTGG+AGG | + | chr5_1:44221267-44221286 | None:intergenic | 35.0% | |
| ACTTGGAGTGGTTTCAACTA+AGG | + | chr5_1:44219568-44219587 | None:intergenic | 40.0% | |
| GGGAAGAATCCCAATTTGAA+AGG | + | chr5_1:44219677-44219696 | None:intergenic | 40.0% | |
| !!! | TTTTGCATAAGGAGGCATCA+AGG | + | chr5_1:44219889-44219908 | None:intergenic | 40.0% |
| TGATGCCTCCTTATGCAAAA+AGG | - | chr5_1:44219889-44219908 | Msa0732160:intron | 40.0% | |
| GATGCCTCCTTATGCAAAAA+GGG | - | chr5_1:44219890-44219909 | Msa0732160:intron | 40.0% | |
| CCCAGATCGACTAAAAATTG+AGG | - | chr5_1:44220015-44220034 | Msa0732160:intron | 40.0% | |
| GAGGAAACTTTGATGCCTTA+TGG | - | chr5_1:44220034-44220053 | Msa0732160:intron | 40.0% | |
| ! | AAATTGTTGTTGGGGAGTCT+GGG | + | chr5_1:44220109-44220128 | None:intergenic | 40.0% |
| ! | AAAATTGTTGTTGGGGAGTC+TGG | + | chr5_1:44220110-44220129 | None:intergenic | 40.0% |
| GGTGATCAAGCATCAATAGT+TGG | - | chr5_1:44220224-44220243 | Msa0732160:intron | 40.0% | |
| GATCAAGCATCAATAGTTGG+CGG | - | chr5_1:44220227-44220246 | Msa0732160:intron | 40.0% | |
| CGGTGCAATTAACTTCTTGA+AGG | - | chr5_1:44220247-44220266 | Msa0732160:intron | 40.0% | |
| ! | GTGACTGATTATGGTTGGTA+GGG | + | chr5_1:44220433-44220452 | None:intergenic | 40.0% |
| GGCAGATATAGAAGTGACTT+TGG | - | chr5_1:44220460-44220479 | Msa0732160:CDS | 40.0% | |
| GTTGAAAAAACGACAAGGAC+AGG | - | chr5_1:44220511-44220530 | Msa0732160:CDS | 40.0% | |
| ACAAGGACAGGTTATGAAGA+TGG | - | chr5_1:44220523-44220542 | Msa0732160:CDS | 40.0% | |
| CAGGTTATGAAGATGGTTGT+TGG | - | chr5_1:44220530-44220549 | Msa0732160:CDS | 40.0% | |
| ACACCTTAATGTTTCCAGTG+TGG | - | chr5_1:44220580-44220599 | Msa0732160:CDS | 40.0% | |
| CATCCACACTGGAAACATTA+AGG | + | chr5_1:44220586-44220605 | None:intergenic | 40.0% | |
| AAGGACATTATCATCCACAC+TGG | + | chr5_1:44220597-44220616 | None:intergenic | 40.0% | |
| ! | GGATGATAATGTCCTTGTCT+CGG | - | chr5_1:44220601-44220620 | Msa0732160:CDS | 40.0% |
| CGGTTAGTGCTAAGGTAAAT+TGG | - | chr5_1:44220621-44220640 | Msa0732160:CDS | 40.0% | |
| CGCGTACTTAACAGAGAATA+AGG | - | chr5_1:44221211-44221230 | Msa0732160:CDS | 40.0% | |
| TGAGCTATCACGTAGAATTC+AGG | - | chr5_1:44221449-44221468 | Msa0732160:CDS | 40.0% | |
| ACTTGGAGTGGTTTCAACTA+AGG | + | chr5_1:44219568-44219587 | None:intergenic | 40.0% | |
| GGGAAGAATCCCAATTTGAA+AGG | + | chr5_1:44219677-44219696 | None:intergenic | 40.0% | |
| !!! | TTTTGCATAAGGAGGCATCA+AGG | + | chr5_1:44219889-44219908 | None:intergenic | 40.0% |
| TGATGCCTCCTTATGCAAAA+AGG | - | chr5_1:44219889-44219908 | Msa0732160:intron | 40.0% | |
| GATGCCTCCTTATGCAAAAA+GGG | - | chr5_1:44219890-44219909 | Msa0732160:intron | 40.0% | |
| CCCAGATCGACTAAAAATTG+AGG | - | chr5_1:44220015-44220034 | Msa0732160:intron | 40.0% | |
| GAGGAAACTTTGATGCCTTA+TGG | - | chr5_1:44220034-44220053 | Msa0732160:intron | 40.0% | |
| ! | AAATTGTTGTTGGGGAGTCT+GGG | + | chr5_1:44220109-44220128 | None:intergenic | 40.0% |
| ! | AAAATTGTTGTTGGGGAGTC+TGG | + | chr5_1:44220110-44220129 | None:intergenic | 40.0% |
| GGTGATCAAGCATCAATAGT+TGG | - | chr5_1:44220224-44220243 | Msa0732160:intron | 40.0% | |
| GATCAAGCATCAATAGTTGG+CGG | - | chr5_1:44220227-44220246 | Msa0732160:intron | 40.0% | |
| CGGTGCAATTAACTTCTTGA+AGG | - | chr5_1:44220247-44220266 | Msa0732160:intron | 40.0% | |
| ! | GTGACTGATTATGGTTGGTA+GGG | + | chr5_1:44220433-44220452 | None:intergenic | 40.0% |
| GGCAGATATAGAAGTGACTT+TGG | - | chr5_1:44220460-44220479 | Msa0732160:CDS | 40.0% | |
| GTTGAAAAAACGACAAGGAC+AGG | - | chr5_1:44220511-44220530 | Msa0732160:CDS | 40.0% | |
| ACAAGGACAGGTTATGAAGA+TGG | - | chr5_1:44220523-44220542 | Msa0732160:CDS | 40.0% | |
| CAGGTTATGAAGATGGTTGT+TGG | - | chr5_1:44220530-44220549 | Msa0732160:CDS | 40.0% | |
| ACACCTTAATGTTTCCAGTG+TGG | - | chr5_1:44220580-44220599 | Msa0732160:CDS | 40.0% | |
| CATCCACACTGGAAACATTA+AGG | + | chr5_1:44220586-44220605 | None:intergenic | 40.0% | |
| AAGGACATTATCATCCACAC+TGG | + | chr5_1:44220597-44220616 | None:intergenic | 40.0% | |
| ! | GGATGATAATGTCCTTGTCT+CGG | - | chr5_1:44220601-44220620 | Msa0732160:CDS | 40.0% |
| CGGTTAGTGCTAAGGTAAAT+TGG | - | chr5_1:44220621-44220640 | Msa0732160:CDS | 40.0% | |
| CGCGTACTTAACAGAGAATA+AGG | - | chr5_1:44221211-44221230 | Msa0732160:CDS | 40.0% | |
| TGAGCTATCACGTAGAATTC+AGG | - | chr5_1:44221449-44221468 | Msa0732160:CDS | 40.0% | |
| GTTGAAACCACTCCAAGTGA+AGG | - | chr5_1:44219570-44219589 | Msa0732160:CDS | 45.0% | |
| TTGTTTGGCAACCGTAGTTG+TGG | + | chr5_1:44219605-44219624 | None:intergenic | 45.0% | |
| TGGGAAGAGTGGTAGTTTCT+GGG | + | chr5_1:44219698-44219717 | None:intergenic | 45.0% | |
| AAAAGTGGAAGTGGGAAGAG+TGG | + | chr5_1:44219709-44219728 | None:intergenic | 45.0% | |
| GTGGATGCAAAAGTGGAAGT+GGG | + | chr5_1:44219717-44219736 | None:intergenic | 45.0% | |
| !! | TGTTGTGGTGGATGCAAAAG+TGG | + | chr5_1:44219724-44219743 | None:intergenic | 45.0% |
| TCAAGGATTTGAGGACATCG+AGG | + | chr5_1:44219872-44219891 | None:intergenic | 45.0% | |
| !! | AAGGAGGCATCAAGGATTTG+AGG | + | chr5_1:44219881-44219900 | None:intergenic | 45.0% |
| CACTCGTACCCAAAACCATA+AGG | + | chr5_1:44220052-44220071 | None:intergenic | 45.0% | |
| !!! | TATGGTTTTGGGTACGAGTG+TGG | - | chr5_1:44220052-44220071 | Msa0732160:intron | 45.0% |
| TCCTAGACGTTTAACGCATC+CGG | - | chr5_1:44220079-44220098 | Msa0732160:intron | 45.0% | |
| ! | AATTGTTGTTGGGGAGTCTG+GGG | + | chr5_1:44220108-44220127 | None:intergenic | 45.0% |
| CGTGACTGATTATGGTTGGT+AGG | + | chr5_1:44220434-44220453 | None:intergenic | 45.0% | |
| ACCAACCATAATCAGTCACG+TGG | - | chr5_1:44220434-44220453 | Msa0732160:CDS | 45.0% | |
| GTGTCAACTACTGAACACAG+TGG | - | chr5_1:44221404-44221423 | Msa0732160:CDS | 45.0% | |
| CAACTACTGAACACAGTGGA+TGG | - | chr5_1:44221408-44221427 | Msa0732160:CDS | 45.0% | |
| GCTATCACGTAGAATTCAGG+TGG | - | chr5_1:44221452-44221471 | Msa0732160:CDS | 45.0% | |
| GTTGAAACCACTCCAAGTGA+AGG | - | chr5_1:44219570-44219589 | Msa0732160:CDS | 45.0% | |
| TTGTTTGGCAACCGTAGTTG+TGG | + | chr5_1:44219605-44219624 | None:intergenic | 45.0% | |
| TGGGAAGAGTGGTAGTTTCT+GGG | + | chr5_1:44219698-44219717 | None:intergenic | 45.0% | |
| AAAAGTGGAAGTGGGAAGAG+TGG | + | chr5_1:44219709-44219728 | None:intergenic | 45.0% | |
| GTGGATGCAAAAGTGGAAGT+GGG | + | chr5_1:44219717-44219736 | None:intergenic | 45.0% | |
| !! | TGTTGTGGTGGATGCAAAAG+TGG | + | chr5_1:44219724-44219743 | None:intergenic | 45.0% |
| TCAAGGATTTGAGGACATCG+AGG | + | chr5_1:44219872-44219891 | None:intergenic | 45.0% | |
| !! | AAGGAGGCATCAAGGATTTG+AGG | + | chr5_1:44219881-44219900 | None:intergenic | 45.0% |
| CACTCGTACCCAAAACCATA+AGG | + | chr5_1:44220052-44220071 | None:intergenic | 45.0% | |
| !!! | TATGGTTTTGGGTACGAGTG+TGG | - | chr5_1:44220052-44220071 | Msa0732160:intron | 45.0% |
| TCCTAGACGTTTAACGCATC+CGG | - | chr5_1:44220079-44220098 | Msa0732160:intron | 45.0% | |
| ! | AATTGTTGTTGGGGAGTCTG+GGG | + | chr5_1:44220108-44220127 | None:intergenic | 45.0% |
| CGTGACTGATTATGGTTGGT+AGG | + | chr5_1:44220434-44220453 | None:intergenic | 45.0% | |
| ACCAACCATAATCAGTCACG+TGG | - | chr5_1:44220434-44220453 | Msa0732160:CDS | 45.0% | |
| GTGTCAACTACTGAACACAG+TGG | - | chr5_1:44221404-44221423 | Msa0732160:CDS | 45.0% | |
| CAACTACTGAACACAGTGGA+TGG | - | chr5_1:44221408-44221427 | Msa0732160:CDS | 45.0% | |
| GCTATCACGTAGAATTCAGG+TGG | - | chr5_1:44221452-44221471 | Msa0732160:CDS | 45.0% | |
| CCAAGATCCTTCACTTGGAG+TGG | + | chr5_1:44219580-44219599 | None:intergenic | 50.0% | |
| CCACTCCAAGTGAAGGATCT+TGG | - | chr5_1:44219577-44219596 | Msa0732160:CDS | 50.0% | |
| TGGCTCCAAGATCCTTCACT+TGG | + | chr5_1:44219585-44219604 | None:intergenic | 50.0% | |
| GGATCTTGGAGCCACAACTA+CGG | - | chr5_1:44219591-44219610 | Msa0732160:intron | 50.0% | |
| GGGAAGAGTGGTAGTTTCTG+GGG | + | chr5_1:44219697-44219716 | None:intergenic | 50.0% | |
| GTGGGAAGAGTGGTAGTTTC+TGG | + | chr5_1:44219699-44219718 | None:intergenic | 50.0% | |
| GGTGGATGCAAAAGTGGAAG+TGG | + | chr5_1:44219718-44219737 | None:intergenic | 50.0% | |
| CTGCAATGTGAGTCATCCTC+TGG | + | chr5_1:44219815-44219834 | None:intergenic | 50.0% | |
| CCTAGACGTTTAACGCATCC+GGG | - | chr5_1:44220080-44220099 | Msa0732160:intron | 50.0% | |
| !! | GGTGCACCCATAGAGTATTG+AGG | + | chr5_1:44220392-44220411 | None:intergenic | 50.0% |
| GCCACGTGACTGATTATGGT+TGG | + | chr5_1:44220438-44220457 | None:intergenic | 50.0% | |
| CCATGCCACGTGACTGATTA+TGG | + | chr5_1:44220442-44220461 | None:intergenic | 50.0% | |
| CCATAATCAGTCACGTGGCA+TGG | - | chr5_1:44220439-44220458 | Msa0732160:CDS | 50.0% | |
| CCTTAGCACTAACCGAGACA+AGG | + | chr5_1:44220616-44220635 | None:intergenic | 50.0% | |
| CCTTGTCTCGGTTAGTGCTA+AGG | - | chr5_1:44220613-44220632 | Msa0732160:CDS | 50.0% | |
| CCAAGATCCTTCACTTGGAG+TGG | + | chr5_1:44219580-44219599 | None:intergenic | 50.0% | |
| CCACTCCAAGTGAAGGATCT+TGG | - | chr5_1:44219577-44219596 | Msa0732160:CDS | 50.0% | |
| TGGCTCCAAGATCCTTCACT+TGG | + | chr5_1:44219585-44219604 | None:intergenic | 50.0% | |
| GGATCTTGGAGCCACAACTA+CGG | - | chr5_1:44219591-44219610 | Msa0732160:intron | 50.0% | |
| GGGAAGAGTGGTAGTTTCTG+GGG | + | chr5_1:44219697-44219716 | None:intergenic | 50.0% | |
| GTGGGAAGAGTGGTAGTTTC+TGG | + | chr5_1:44219699-44219718 | None:intergenic | 50.0% | |
| GGTGGATGCAAAAGTGGAAG+TGG | + | chr5_1:44219718-44219737 | None:intergenic | 50.0% | |
| CTGCAATGTGAGTCATCCTC+TGG | + | chr5_1:44219815-44219834 | None:intergenic | 50.0% | |
| CCTAGACGTTTAACGCATCC+GGG | - | chr5_1:44220080-44220099 | Msa0732160:intron | 50.0% | |
| !! | GGTGCACCCATAGAGTATTG+AGG | + | chr5_1:44220392-44220411 | None:intergenic | 50.0% |
| GCCACGTGACTGATTATGGT+TGG | + | chr5_1:44220438-44220457 | None:intergenic | 50.0% | |
| CCATGCCACGTGACTGATTA+TGG | + | chr5_1:44220442-44220461 | None:intergenic | 50.0% | |
| CCATAATCAGTCACGTGGCA+TGG | - | chr5_1:44220439-44220458 | Msa0732160:CDS | 50.0% | |
| CCTTAGCACTAACCGAGACA+AGG | + | chr5_1:44220616-44220635 | None:intergenic | 50.0% | |
| CCTTGTCTCGGTTAGTGCTA+AGG | - | chr5_1:44220613-44220632 | Msa0732160:CDS | 50.0% | |
| TCGTCGTTTGCTCTGACGAG+GGG | + | chr5_1:44219754-44219773 | None:intergenic | 55.0% | |
| GTCGTCGTTTGCTCTGACGA+GGG | + | chr5_1:44219755-44219774 | None:intergenic | 55.0% | |
| AGGAGGAAATCGAGAGCCAG+AGG | - | chr5_1:44219796-44219815 | Msa0732160:intron | 55.0% | |
| CCCGGATGCGTTAAACGTCT+AGG | + | chr5_1:44220083-44220102 | None:intergenic | 55.0% | |
| GGGTAGCACGTGATGTTCTG+AGG | + | chr5_1:44220413-44220432 | None:intergenic | 55.0% | |
| TCGTCGTTTGCTCTGACGAG+GGG | + | chr5_1:44219754-44219773 | None:intergenic | 55.0% | |
| GTCGTCGTTTGCTCTGACGA+GGG | + | chr5_1:44219755-44219774 | None:intergenic | 55.0% | |
| AGGAGGAAATCGAGAGCCAG+AGG | - | chr5_1:44219796-44219815 | Msa0732160:intron | 55.0% | |
| CCCGGATGCGTTAAACGTCT+AGG | + | chr5_1:44220083-44220102 | None:intergenic | 55.0% | |
| GGGTAGCACGTGATGTTCTG+AGG | + | chr5_1:44220413-44220432 | None:intergenic | 55.0% | |
| AGGGGCTGTGGTTGTTGTGG+TGG | + | chr5_1:44219736-44219755 | None:intergenic | 60.0% | |
| ACGAGGGGCTGTGGTTGTTG+TGG | + | chr5_1:44219739-44219758 | None:intergenic | 60.0% | |
| TTTGCTCTGACGAGGGGCTG+TGG | + | chr5_1:44219748-44219767 | None:intergenic | 60.0% | |
| CGTCGTCGTTTGCTCTGACG+AGG | + | chr5_1:44219756-44219775 | None:intergenic | 60.0% | |
| AGGGGCTGTGGTTGTTGTGG+TGG | + | chr5_1:44219736-44219755 | None:intergenic | 60.0% | |
| ACGAGGGGCTGTGGTTGTTG+TGG | + | chr5_1:44219739-44219758 | None:intergenic | 60.0% | |
| TTTGCTCTGACGAGGGGCTG+TGG | + | chr5_1:44219748-44219767 | None:intergenic | 60.0% | |
| CGTCGTCGTTTGCTCTGACG+AGG | + | chr5_1:44219756-44219775 | None:intergenic | 60.0% | |
| GTTGGGGAGTCTGGGGAGCC+CGG | + | chr5_1:44220101-44220120 | None:intergenic | 70.0% | |
| GTTGGGGAGTCTGGGGAGCC+CGG | + | chr5_1:44220101-44220120 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 44219498 | 44221494 | 44219498 | ID=Msa0732160;Name=Msa0732160 |
| chr5_1 | mRNA | 44219498 | 44221494 | 44219498 | ID=Msa0732160-mRNA-1;Parent=Msa0732160;Name=Msa0732160-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|0.66|1|1|3|0|308 |
| chr5_1 | exon | 44221081 | 44221494 | 44221081 | ID=Msa0732160-mRNA-1:exon:12578;Parent=Msa0732160-mRNA-1 |
| chr5_1 | exon | 44220358 | 44220768 | 44220358 | ID=Msa0732160-mRNA-1:exon:12577;Parent=Msa0732160-mRNA-1 |
| chr5_1 | exon | 44219498 | 44219599 | 44219498 | ID=Msa0732160-mRNA-1:exon:12576;Parent=Msa0732160-mRNA-1 |
| chr5_1 | CDS | 44221081 | 44221494 | 44221081 | ID=Msa0732160-mRNA-1:cds;Parent=Msa0732160-mRNA-1 |
| chr5_1 | CDS | 44220358 | 44220768 | 44220358 | ID=Msa0732160-mRNA-1:cds;Parent=Msa0732160-mRNA-1 |
| chr5_1 | CDS | 44219498 | 44219599 | 44219498 | ID=Msa0732160-mRNA-1:cds;Parent=Msa0732160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
