Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827630 | XP_003615240.1 | 92.641 | 231 | 13 | 2 | 1 | 231 | 1 | 227 | 2.37e-154 | 437 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827630 | sp|Q9VDL1|LOVG_DROME | 30.045 | 223 | 137 | 9 | 6 | 216 | 24 | 239 | 2.74e-18 | 84.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827630 | G7KBG3 | 92.641 | 231 | 13 | 2 | 1 | 231 | 1 | 227 | 1.13e-154 | 437 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013280 | Msa0827630 | 0.815734 | 7.941057e-52 | -8.615850e-47 |
| Msa0732350 | Msa0827630 | 0.851404 | 9.073281e-61 | -8.615850e-47 |
| Msa0773380 | Msa0827630 | 0.992254 | 3.358236e-192 | -8.615850e-47 |
| Msa0827630 | Msa1379580 | 0.803297 | 3.729375e-49 | -8.615850e-47 |
| Msa0827630 | Msa1408180 | 0.813785 | 2.146609e-51 | -8.615850e-47 |
| Msa0827630 | Msa1424630 | 0.806962 | 6.376920e-50 | -8.615850e-47 |
| Msa0827630 | Msa1448980 | 0.808095 | 3.664349e-50 | -8.615850e-47 |
| Msa0408340 | Msa0827630 | 0.801832 | 7.475094e-49 | -8.615850e-47 |
| Msa0580920 | Msa0827630 | 0.804863 | 1.760895e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827630 | MtrunA17_Chr5g0427111 | 92.641 | 231 | 13 | 2 | 1 | 231 | 1 | 227 | 2.18e-158 | 437 |
| Msa0827630 | MtrunA17_Chr5g0412511 | 59.740 | 231 | 83 | 3 | 1 | 226 | 1 | 226 | 5.09e-99 | 287 |
| Msa0827630 | MtrunA17_Chr7g0254691 | 51.220 | 205 | 100 | 0 | 11 | 215 | 7 | 211 | 2.48e-75 | 228 |
| Msa0827630 | MtrunA17_Chr6g0464361 | 82.895 | 76 | 10 | 1 | 1 | 76 | 1 | 73 | 2.12e-41 | 135 |
| Msa0827630 | MtrunA17_Chr1g0192901 | 28.033 | 239 | 114 | 11 | 9 | 198 | 412 | 641 | 4.76e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827630 | AT4G24380.1 | 67.431 | 218 | 71 | 0 | 7 | 224 | 6 | 223 | 1.87e-115 | 330 |
| Msa0827630 | AT4G24380.3 | 60.000 | 245 | 71 | 1 | 7 | 224 | 6 | 250 | 1.23e-109 | 316 |
| Msa0827630 | AT4G24380.2 | 72.050 | 161 | 45 | 0 | 7 | 167 | 6 | 166 | 2.53e-89 | 261 |
| Msa0827630 | AT5G65400.1 | 58.222 | 225 | 88 | 2 | 11 | 230 | 28 | 251 | 1.14e-88 | 262 |
| Msa0827630 | AT5G65400.2 | 58.222 | 225 | 88 | 2 | 11 | 230 | 46 | 269 | 2.70e-88 | 262 |
| Msa0827630 | AT4G24380.5 | 76.923 | 117 | 27 | 0 | 7 | 123 | 6 | 122 | 2.14e-68 | 206 |
| Msa0827630 | AT4G24380.6 | 63.087 | 149 | 55 | 0 | 76 | 224 | 53 | 201 | 3.99e-67 | 206 |
| Msa0827630 | AT4G24380.4 | 62.500 | 144 | 27 | 1 | 7 | 123 | 6 | 149 | 6.67e-63 | 193 |
| Msa0827630 | AT1G09280.1 | 29.148 | 223 | 119 | 8 | 8 | 198 | 349 | 564 | 3.73e-18 | 83.2 |
Find 64 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAAATAAAATAGGAATTA+TGG | 0.175184 | 5_3:-69011475 | None:intergenic |
| GAATCCAATTTATAGGATTC+AGG | 0.217310 | 5_3:-69011376 | None:intergenic |
| ATGAATTGAATCCAATTTAT+AGG | 0.234650 | 5_3:-69011383 | None:intergenic |
| AAACCCTGAATCCTATAAAT+TGG | 0.246445 | 5_3:+69011372 | Msa0827630:five_prime_UTR |
| TCAATTAAATTAAATAAAAT+AGG | 0.247280 | 5_3:-69011483 | None:intergenic |
| CTTGGTACAGTGTGTCCTTT+TGG | 0.255612 | 5_3:-69014472 | None:intergenic |
| TTGCCCCTCCTATTATTATA+AGG | 0.258599 | 5_3:-69013804 | None:intergenic |
| AAAGCATATTCTTCACAAAT+TGG | 0.265190 | 5_3:+69013853 | Msa0827630:CDS |
| GTGAAATTCCTTATAATAAT+AGG | 0.268426 | 5_3:+69013796 | Msa0827630:CDS |
| GGACCGTTTGATGGTCTTCT+TGG | 0.283927 | 5_3:+69011911 | Msa0827630:CDS |
| CCAAGATTTATGTGTCTTCA+TGG | 0.291824 | 5_3:+69011551 | Msa0827630:CDS |
| TAATAGGAGGGGCAAAGTTC+AGG | 0.313761 | 5_3:+69013812 | Msa0827630:CDS |
| CTCCTTATTATGAGTGGTTC+GGG | 0.359841 | 5_3:+69011711 | Msa0827630:CDS |
| AGGGGCACTGCCAGGTCTTC+AGG | 0.365615 | 5_3:+69012095 | Msa0827630:CDS |
| CCTCCTTATTATGAGTGGTT+CGG | 0.369390 | 5_3:+69011710 | Msa0827630:CDS |
| GCCTGAATCCATGTTAGCTT+TGG | 0.370714 | 5_3:-69016115 | None:intergenic |
| AGTGGAAGAAAGATGGAATA+AGG | 0.378734 | 5_3:-69011418 | None:intergenic |
| GATGAGCTAATACGTCTCTT+AGG | 0.381520 | 5_3:+69015966 | Msa0827630:exon |
| TACCCGAACCACTCATAATA+AGG | 0.388373 | 5_3:-69011713 | None:intergenic |
| CCATGAAGACACATAAATCT+TGG | 0.393495 | 5_3:-69011551 | None:intergenic |
| TCCAAAGCTAACATGGATTC+AGG | 0.398376 | 5_3:+69016114 | Msa0827630:three_prime_UTR |
| ATTATAAGGAATTTCACTTT+GGG | 0.410361 | 5_3:-69013790 | None:intergenic |
| ATCAAACATGGACCGTTTGA+TGG | 0.413598 | 5_3:+69011902 | Msa0827630:CDS |
| TATTATAAGGAATTTCACTT+TGG | 0.427378 | 5_3:-69013791 | None:intergenic |
| AATCCAATTTATAGGATTCA+GGG | 0.431564 | 5_3:-69011375 | None:intergenic |
| AATGGCAAATCTTCTGTTGA+AGG | 0.445603 | 5_3:+69011677 | Msa0827630:CDS |
| ACAGAAGATTTGCCATTACA+AGG | 0.448602 | 5_3:-69011671 | None:intergenic |
| GGACACACTGTACCAAGATT+AGG | 0.480578 | 5_3:+69014478 | Msa0827630:CDS |
| AATAGGAGGGGCAAAGTTCA+GGG | 0.486880 | 5_3:+69013813 | Msa0827630:CDS |
| CAAGATTTATGTGTCTTCAT+GGG | 0.487719 | 5_3:+69011552 | Msa0827630:CDS |
| TGGTCTTCTTGGATTCTCAC+AGG | 0.488533 | 5_3:+69011922 | Msa0827630:CDS |
| ATTAGTAGCACACCTAATCT+TGG | 0.492125 | 5_3:-69014490 | None:intergenic |
| GATTTGCCATTACAAGGAAA+AGG | 0.494747 | 5_3:-69011665 | None:intergenic |
| ATATTATCAGGGGCACTGCC+AGG | 0.501875 | 5_3:+69012087 | Msa0827630:CDS |
| GAAAGATGGAATAAGGTTTG+TGG | 0.508983 | 5_3:-69011411 | None:intergenic |
| ATTTAATTGAAGAAGAGAGA+TGG | 0.516375 | 5_3:+69011496 | Msa0827630:exon |
| TCTTTCTATGAAACTCATCA+TGG | 0.528093 | 5_3:-69015899 | None:intergenic |
| CATACCTTCTCCTGAAGACC+TGG | 0.535143 | 5_3:-69012105 | None:intergenic |
| TCGACCCTCCTTATTATGAG+TGG | 0.538420 | 5_3:+69011705 | Msa0827630:CDS |
| GTGGTAATTCATCACCCAAA+AGG | 0.539105 | 5_3:+69014457 | Msa0827630:CDS |
| TATTATATCTGAAAATAAAG+AGG | 0.545461 | 5_3:+69015933 | Msa0827630:CDS |
| AGCTAACATGGATTCAGGCT+CGG | 0.548144 | 5_3:+69016119 | Msa0827630:three_prime_UTR |
| ATTGTATTTGTTGTGATGAG+TGG | 0.548332 | 5_3:-69011436 | None:intergenic |
| TTTGGGTGATGAATTACCAC+AGG | 0.551356 | 5_3:-69014454 | None:intergenic |
| AAAGTTCAGGGCACCTTCAG+TGG | 0.556647 | 5_3:+69013825 | Msa0827630:CDS |
| CTTCATGGGTTTCGAACAAG+TGG | 0.558594 | 5_3:+69011566 | Msa0827630:CDS |
| TGTGATGAGTGGAAGAAAGA+TGG | 0.564457 | 5_3:-69011425 | None:intergenic |
| TCTGTGGTCCAAAGCTAACA+TGG | 0.568715 | 5_3:+69016107 | Msa0827630:three_prime_UTR |
| ACTGCCAGGTCTTCAGGAGA+AGG | 0.577964 | 5_3:+69012101 | Msa0827630:CDS |
| ATTCCTTATAATAATAGGAG+GGG | 0.578464 | 5_3:+69013801 | Msa0827630:CDS |
| TATGCTTTCTCTACCACTGA+AGG | 0.584580 | 5_3:-69013838 | None:intergenic |
| AAATTCCTTATAATAATAGG+AGG | 0.592167 | 5_3:+69013799 | Msa0827630:CDS |
| AATCCAAGAAGACCATCAAA+CGG | 0.617555 | 5_3:-69011914 | None:intergenic |
| AATTCCTTATAATAATAGGA+GGG | 0.618651 | 5_3:+69013800 | Msa0827630:CDS |
| ATAGGAATATATAAGATGTG+TGG | 0.621438 | 5_3:-69016062 | None:intergenic |
| CCGAACCACTCATAATAAGG+AGG | 0.630666 | 5_3:-69011710 | None:intergenic |
| TACCTAGAAAATGAAGAGAG+TGG | 0.639422 | 5_3:-69013879 | None:intergenic |
| CGAACCACTCATAATAAGGA+GGG | 0.642917 | 5_3:-69011709 | None:intergenic |
| AGATAATTGTGTTGAACCTG+TGG | 0.656624 | 5_3:+69014438 | Msa0827630:CDS |
| GAGGATTACATGATCAAACA+TGG | 0.657463 | 5_3:+69011890 | Msa0827630:CDS |
| AGATGGAATAAGGTTTGTGG+AGG | 0.657667 | 5_3:-69011408 | None:intergenic |
| TGAGTGTCTGCAATATATTG+AGG | 0.665567 | 5_3:+69011871 | Msa0827630:CDS |
| AATAAAATAGGAATTATGGA+CGG | 0.670078 | 5_3:-69011471 | None:intergenic |
| TGAGTGGTTCGGGTACAACG+AGG | 0.765548 | 5_3:+69011721 | Msa0827630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAATTTTTTTTTTAAAA+TGG | - | chr5_3:69014631-69014650 | None:intergenic | 0.0% |
| !!! | ATATAAAAAAAATATATTTT+GGG | + | chr5_3:69014775-69014794 | Msa0827630:intron | 0.0% |
| !! | ATTAAATAAAATAGGAATTA+TGG | - | chr5_3:69011478-69011497 | None:intergenic | 10.0% |
| !!! | TAGTTTTAAAAGTAATATTT+TGG | + | chr5_3:69013226-69013245 | Msa0827630:intron | 10.0% |
| !!! | TAACTGATTATTATTATTTT+TGG | + | chr5_3:69013951-69013970 | Msa0827630:intron | 10.0% |
| !! | AAAAATTATAAATCATACTT+TGG | + | chr5_3:69014640-69014659 | Msa0827630:intron | 10.0% |
| !! | ATCAAATATTGAAAATTTGA+AGG | + | chr5_3:69011984-69012003 | Msa0827630:intron | 15.0% |
| !!! | TATGTTTGATTTGATTTATA+AGG | + | chr5_3:69012019-69012038 | Msa0827630:intron | 15.0% |
| !!! | ATCTTTCTTTTTGAAAAATA+AGG | - | chr5_3:69012379-69012398 | None:intergenic | 15.0% |
| !!! | GGCAATTATTATATTTTTTT+GGG | + | chr5_3:69012689-69012708 | Msa0827630:intron | 15.0% |
| !! | AATTTCTTGATAAAATCTAA+GGG | + | chr5_3:69012872-69012891 | Msa0827630:intron | 15.0% |
| !! | AAAATTATTGAACTTATCTT+CGG | - | chr5_3:69013033-69013052 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr5_3:69013203-69013222 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr5_3:69013202-69013221 | Msa0827630:intron | 15.0% |
| !! | AGAAAAAATTATTATTGCAT+TGG | + | chr5_3:69013289-69013308 | Msa0827630:intron | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | + | chr5_3:69013329-69013348 | Msa0827630:intron | 15.0% |
| !! | TAAATACATTGAAAATTGAA+AGG | - | chr5_3:69013916-69013935 | None:intergenic | 15.0% |
| !! | CTTGCATATATTATTTATAA+AGG | + | chr5_3:69013985-69014004 | Msa0827630:intron | 15.0% |
| !! | ATGCAAAAAAAATTAAATTC+CGG | + | chr5_3:69014586-69014605 | Msa0827630:intron | 15.0% |
| !!! | AAATGGCTTATTTTTTTTTT+GGG | - | chr5_3:69014614-69014633 | None:intergenic | 15.0% |
| !!! | AAAATGGCTTATTTTTTTTT+TGG | - | chr5_3:69014615-69014634 | None:intergenic | 15.0% |
| !! | TTATTCAACAACTTTAATAA+TGG | + | chr5_3:69015554-69015573 | Msa0827630:intron | 15.0% |
| !! | TATTATATCTGAAAATAAAG+AGG | + | chr5_3:69015933-69015952 | Msa0827630:CDS | 15.0% |
| !! | AAAAATAATATTATTGTCTG+TGG | + | chr5_3:69016091-69016110 | Msa0827630:three_prime_UTR | 15.0% |
| !!! | ATGTAAAATGCATTTTATAT+AGG | - | chr5_3:69016213-69016232 | None:intergenic | 15.0% |
| !! | ATGAATTGAATCCAATTTAT+AGG | - | chr5_3:69011386-69011405 | None:intergenic | 20.0% |
| !! | AATAAAATAGGAATTATGGA+CGG | - | chr5_3:69011474-69011493 | None:intergenic | 20.0% |
| !! | TGTTTGAATTTGACAAAATA+GGG | + | chr5_3:69012060-69012079 | Msa0827630:intron | 20.0% |
| !!! | ATTTTTATTTTATCCCTAGA+CGG | + | chr5_3:69012205-69012224 | Msa0827630:intron | 20.0% |
| !!! | AATAAGGTATCATTAAGTTA+TGG | - | chr5_3:69012363-69012382 | None:intergenic | 20.0% |
| !! | ATTGTGTAAATAATGACATA+AGG | + | chr5_3:69012667-69012686 | Msa0827630:intron | 20.0% |
| !! | TTGTGTAAATAATGACATAA+GGG | + | chr5_3:69012668-69012687 | Msa0827630:intron | 20.0% |
| !!! | GGGCAATTATTATATTTTTT+TGG | + | chr5_3:69012688-69012707 | Msa0827630:intron | 20.0% |
| !! | CAATTTCTTGATAAAATCTA+AGG | + | chr5_3:69012871-69012890 | Msa0827630:intron | 20.0% |
| !!! | TAGAGATAAGAGTTTTTTTA+TGG | - | chr5_3:69012995-69013014 | None:intergenic | 20.0% |
| !!! | TAGAGATAAGAGTTTTTTTA+TGG | - | chr5_3:69012995-69013014 | None:intergenic | 20.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | + | chr5_3:69013169-69013188 | Msa0827630:intron | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr5_3:69013212-69013231 | None:intergenic | 20.0% |
| !! | GTGTAGAAATTAAACTAAAA+TGG | + | chr5_3:69013649-69013668 | Msa0827630:intron | 20.0% |
| !! | ATTATAAATTCGCAAACAAA+TGG | - | chr5_3:69013693-69013712 | None:intergenic | 20.0% |
| !! | TATTTCGACAATCTAAAAAA+TGG | + | chr5_3:69013721-69013740 | Msa0827630:intron | 20.0% |
| !! | TTTATGTTATGTATATGTGT+AGG | + | chr5_3:69013747-69013766 | Msa0827630:intron | 20.0% |
| !! | TTATGTTATGTATATGTGTA+GGG | + | chr5_3:69013748-69013767 | Msa0827630:intron | 20.0% |
| !! | ATTATAAGGAATTTCACTTT+GGG | - | chr5_3:69013793-69013812 | None:intergenic | 20.0% |
| !! | TATTATAAGGAATTTCACTT+TGG | - | chr5_3:69013794-69013813 | None:intergenic | 20.0% |
| !! | GTGAAATTCCTTATAATAAT+AGG | + | chr5_3:69013796-69013815 | Msa0827630:CDS | 20.0% |
| !! | AAATTCCTTATAATAATAGG+AGG | + | chr5_3:69013799-69013818 | Msa0827630:CDS | 20.0% |
| !! | AATTCCTTATAATAATAGGA+GGG | + | chr5_3:69013800-69013819 | Msa0827630:CDS | 20.0% |
| !!! | CTGATTATTATTATTTTTGG+TGG | + | chr5_3:69013954-69013973 | Msa0827630:intron | 20.0% |
| !!! | ATTATTATTATTTTTGGTGG+TGG | + | chr5_3:69013957-69013976 | Msa0827630:intron | 20.0% |
| !! | ATAAATAATATATGCAAGAG+AGG | - | chr5_3:69013983-69014002 | None:intergenic | 20.0% |
| !! | TTCTACATTAACTTTAGATA+TGG | + | chr5_3:69014168-69014187 | Msa0827630:intron | 20.0% |
| !!! | TATAGTTTTTTTACAAGAAG+CGG | + | chr5_3:69014207-69014226 | Msa0827630:intron | 20.0% |
| !!! | ATAAGCACAAATTTCTTTTA+AGG | - | chr5_3:69014373-69014392 | None:intergenic | 20.0% |
| !!! | ATTTATCTTGTTTATATGCA+AGG | + | chr5_3:69014520-69014539 | Msa0827630:intron | 20.0% |
| !! | ATCCCTTATAAAATTAAAAC+CGG | - | chr5_3:69014568-69014587 | None:intergenic | 20.0% |
| !! | TGCAAAAAAAATTAAATTCC+GGG | + | chr5_3:69014587-69014606 | Msa0827630:intron | 20.0% |
| !!! | AATGGCTTATTTTTTTTTTG+GGG | - | chr5_3:69014613-69014632 | None:intergenic | 20.0% |
| !! | AATTATAAATCATACTTTGG+TGG | + | chr5_3:69014643-69014662 | Msa0827630:intron | 20.0% |
| !! | ATTATAAATCATACTTTGGT+GGG | + | chr5_3:69014644-69014663 | Msa0827630:intron | 20.0% |
| !! | TCATTAGAAACATATAAACA+GGG | - | chr5_3:69014857-69014876 | None:intergenic | 20.0% |
| !!! | TTGATTAAACAACCATTTTT+GGG | - | chr5_3:69015838-69015857 | None:intergenic | 20.0% |
| !!! | ATTGATTAAACAACCATTTT+TGG | - | chr5_3:69015839-69015858 | None:intergenic | 20.0% |
| !! | TCTTATCATCTGAAAAATAA+AGG | - | chr5_3:69015870-69015889 | None:intergenic | 20.0% |
| !!! | TTCCAAATATATTTTTGAAG+TGG | + | chr5_3:69016037-69016056 | Msa0827630:three_prime_UTR | 20.0% |
| !! | ATCCACTTCAAAAATATATT+TGG | - | chr5_3:69016042-69016061 | None:intergenic | 20.0% |
| ! | AATCCAATTTATAGGATTCA+GGG | - | chr5_3:69011378-69011397 | None:intergenic | 25.0% |
| ! | ATTTAATTGAAGAAGAGAGA+TGG | + | chr5_3:69011496-69011515 | Msa0827630:exon | 25.0% |
| !!! | CATAAATCTTGGTTTTCTTA+CGG | - | chr5_3:69011543-69011562 | None:intergenic | 25.0% |
| ! | TGAAAAAACAGATACATAAG+TGG | + | chr5_3:69011597-69011616 | Msa0827630:CDS | 25.0% |
| ! | TTGAATTAAGAAGCTAATGA+AGG | - | chr5_3:69011950-69011969 | None:intergenic | 25.0% |
| ! | GTGTTTGAATTTGACAAAAT+AGG | + | chr5_3:69012059-69012078 | Msa0827630:intron | 25.0% |
| ! | GTTTGAATTTGACAAAATAG+GGG | + | chr5_3:69012061-69012080 | Msa0827630:intron | 25.0% |
| ! | TTTGAATTTGACAAAATAGG+GGG | + | chr5_3:69012062-69012081 | Msa0827630:intron | 25.0% |
| ! | TAAATTTGAACATGAGACAA+CGG | + | chr5_3:69012306-69012325 | Msa0827630:intron | 25.0% |
| !! | ATTTTGCTTATAATAGTGAC+CGG | - | chr5_3:69012427-69012446 | None:intergenic | 25.0% |
| !!! | TATTGGCTTACATTAATTTC+AGG | + | chr5_3:69012847-69012866 | Msa0827630:intron | 25.0% |
| !!! | ATAAGAGTTTTTTTATGGAC+TGG | - | chr5_3:69012990-69013009 | None:intergenic | 25.0% |
| !!! | TCAATAATTTTTTTCGAGCT+TGG | + | chr5_3:69013042-69013061 | Msa0827630:intron | 25.0% |
| !!! | ATAAGAGTTTTTTTATGGAC+TGG | - | chr5_3:69012990-69013009 | None:intergenic | 25.0% |
| !!! | GGCTACTCTATTTTTTTTTA+GGG | - | chr5_3:69013418-69013437 | None:intergenic | 25.0% |
| ! | ACATCTTAATATCCTTACTT+AGG | - | chr5_3:69013465-69013484 | None:intergenic | 25.0% |
| ! | AAGTAAGGATATTAAGATGT+TGG | + | chr5_3:69013465-69013484 | Msa0827630:intron | 25.0% |
| !!! | ATAAGATTTCTGAAATTGCT+AGG | + | chr5_3:69013615-69013634 | Msa0827630:intron | 25.0% |
| !!! | TAAGATTTCTGAAATTGCTA+GGG | + | chr5_3:69013616-69013635 | Msa0827630:intron | 25.0% |
| ! | ATTCCTTATAATAATAGGAG+GGG | + | chr5_3:69013801-69013820 | Msa0827630:CDS | 25.0% |
| ! | AAAGCATATTCTTCACAAAT+TGG | + | chr5_3:69013853-69013872 | Msa0827630:CDS | 25.0% |
| ! | TAAAAAAACTATACCTACCT+GGG | - | chr5_3:69014200-69014219 | None:intergenic | 25.0% |
| ! | ATTGTGACATAGATGAAAAA+GGG | - | chr5_3:69014296-69014315 | None:intergenic | 25.0% |
| ! | TATTGTGACATAGATGAAAA+AGG | - | chr5_3:69014297-69014316 | None:intergenic | 25.0% |
| ! | TCCCTTATAAAATTAAAACC+GGG | - | chr5_3:69014567-69014586 | None:intergenic | 25.0% |
| ! | TATGTAAGACACGAAAATAA+TGG | - | chr5_3:69014758-69014777 | None:intergenic | 25.0% |
| ! | CTCATTAGAAACATATAAAC+AGG | - | chr5_3:69014858-69014877 | None:intergenic | 25.0% |
| !! | GTTTATATGTTTCTAATGAG+TGG | + | chr5_3:69014858-69014877 | Msa0827630:intron | 25.0% |
| !! | TATGATTTGTAAAAGTTCAG+GGG | - | chr5_3:69014934-69014953 | None:intergenic | 25.0% |
| !! | GTATGATTTGTAAAAGTTCA+GGG | - | chr5_3:69014935-69014954 | None:intergenic | 25.0% |
| !! | AGTATGATTTGTAAAAGTTC+AGG | - | chr5_3:69014936-69014955 | None:intergenic | 25.0% |
| ! | AAATAAAACGTAACAAGTGA+AGG | - | chr5_3:69015230-69015249 | None:intergenic | 25.0% |
| ! | AGATGATGACAAAAGATATA+AGG | - | chr5_3:69015277-69015296 | None:intergenic | 25.0% |
| ! | TGTAGTCAAATATGAAATGA+AGG | + | chr5_3:69015495-69015514 | Msa0827630:intron | 25.0% |
| ! | CTTTATAATTGTCTTCTTTG+TGG | - | chr5_3:69015640-69015659 | None:intergenic | 25.0% |
| ! | TTAATCATTTCTCCCAAAAA+TGG | + | chr5_3:69015823-69015842 | Msa0827630:intron | 25.0% |
| ! | ATAGGAATATATAAGATGTG+TGG | - | chr5_3:69016065-69016084 | None:intergenic | 25.0% |
| AAACCCTGAATCCTATAAAT+TGG | + | chr5_3:69011372-69011391 | Msa0827630:five_prime_UTR | 30.0% | |
| GAATCCAATTTATAGGATTC+AGG | - | chr5_3:69011379-69011398 | None:intergenic | 30.0% | |
| !! | ATTGTATTTGTTGTGATGAG+TGG | - | chr5_3:69011439-69011458 | None:intergenic | 30.0% |
| CAAGATTTATGTGTCTTCAT+GGG | + | chr5_3:69011552-69011571 | Msa0827630:CDS | 30.0% | |
| GAAAATTTGAAGGATCATTG+TGG | + | chr5_3:69011994-69012013 | Msa0827630:intron | 30.0% | |
| TTATAAGGATCTGAATCTGA+TGG | + | chr5_3:69012034-69012053 | Msa0827630:intron | 30.0% | |
| ! | GAGAAGGTATGTAAAAAACT+GGG | + | chr5_3:69012117-69012136 | Msa0827630:intron | 30.0% |
| GTTATTTATCATTCCGTCTA+GGG | - | chr5_3:69012221-69012240 | None:intergenic | 30.0% | |
| ! | TGTTATTTATCATTCCGTCT+AGG | - | chr5_3:69012222-69012241 | None:intergenic | 30.0% |
| ATGCTAATATATACTCCATC+CGG | + | chr5_3:69012405-69012424 | Msa0827630:intron | 30.0% | |
| AGAAAGATTCAAGAATGACA+TGG | + | chr5_3:69012743-69012762 | Msa0827630:intron | 30.0% | |
| AAATCTAAGGGTGATTATTC+TGG | + | chr5_3:69012884-69012903 | Msa0827630:intron | 30.0% | |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr5_3:69013120-69013139 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr5_3:69013121-69013140 | Msa0827630:intron | 30.0% |
| !!! | CGGCTACTCTATTTTTTTTT+AGG | - | chr5_3:69013419-69013438 | None:intergenic | 30.0% |
| AAGGATATTAAGATGTTGGA+AGG | + | chr5_3:69013469-69013488 | Msa0827630:intron | 30.0% | |
| GACGTTTATATGTACATAAG+AGG | + | chr5_3:69013592-69013611 | Msa0827630:intron | 30.0% | |
| ACATTGAAAATTGAAAGGAG+AGG | - | chr5_3:69013911-69013930 | None:intergenic | 30.0% | |
| !!! | TTTAGATATGGTTTTTTCCC+AGG | + | chr5_3:69014180-69014199 | Msa0827630:intron | 30.0% |
| GTAAAAAAACTATACCTACC+TGG | - | chr5_3:69014201-69014220 | None:intergenic | 30.0% | |
| AAGAAATTTGTGCTTATTGC+AGG | + | chr5_3:69014376-69014395 | Msa0827630:intron | 30.0% | |
| !!! | CATGATTTTTTGAAGGAGTA+TGG | + | chr5_3:69014403-69014422 | Msa0827630:CDS | 30.0% |
| !!! | GCCCGGTTTTAATTTTATAA+GGG | + | chr5_3:69014563-69014582 | Msa0827630:intron | 30.0% |
| ! | ATGATTTGTAAAAGTTCAGG+GGG | - | chr5_3:69014933-69014952 | None:intergenic | 30.0% |
| ! | GTTCATAGTGCAGTTTTTAA+AGG | - | chr5_3:69014965-69014984 | None:intergenic | 30.0% |
| ! | ATATAAGGAAGTACACAAAG+TGG | - | chr5_3:69015262-69015281 | None:intergenic | 30.0% |
| TAATTGCCTTGTGACTTATA+TGG | + | chr5_3:69015523-69015542 | Msa0827630:intron | 30.0% | |
| TAAGAATATGTTAGAAGCAG+TGG | - | chr5_3:69015783-69015802 | None:intergenic | 30.0% | |
| TCTTTCTATGAAACTCATCA+TGG | - | chr5_3:69015902-69015921 | None:intergenic | 30.0% | |
| GAAAGATGGAATAAGGTTTG+TGG | - | chr5_3:69011414-69011433 | None:intergenic | 35.0% | |
| AGTGGAAGAAAGATGGAATA+AGG | - | chr5_3:69011421-69011440 | None:intergenic | 35.0% | |
| CCATGAAGACACATAAATCT+TGG | - | chr5_3:69011554-69011573 | None:intergenic | 35.0% | |
| CCAAGATTTATGTGTCTTCA+TGG | + | chr5_3:69011551-69011570 | Msa0827630:CDS | 35.0% | |
| !! | AGTTTGTCTAGAACGTTTTG+TGG | - | chr5_3:69011623-69011642 | None:intergenic | 35.0% |
| GATTTGCCATTACAAGGAAA+AGG | - | chr5_3:69011668-69011687 | None:intergenic | 35.0% | |
| ACAGAAGATTTGCCATTACA+AGG | - | chr5_3:69011674-69011693 | None:intergenic | 35.0% | |
| AATGGCAAATCTTCTGTTGA+AGG | + | chr5_3:69011677-69011696 | Msa0827630:CDS | 35.0% | |
| TGAGTGTCTGCAATATATTG+AGG | + | chr5_3:69011871-69011890 | Msa0827630:CDS | 35.0% | |
| GAGGATTACATGATCAAACA+TGG | + | chr5_3:69011890-69011909 | Msa0827630:CDS | 35.0% | |
| AATCCAAGAAGACCATCAAA+CGG | - | chr5_3:69011917-69011936 | None:intergenic | 35.0% | |
| ! | GGAGAAGGTATGTAAAAAAC+TGG | + | chr5_3:69012116-69012135 | Msa0827630:intron | 35.0% |
| TTGCTTATAATAGTGACCTG+AGG | + | chr5_3:69012539-69012558 | Msa0827630:intron | 35.0% | |
| TGCTTATAATAGTGACCTGA+GGG | + | chr5_3:69012540-69012559 | Msa0827630:intron | 35.0% | |
| TACTTAAAACATACTCCCTC+AGG | - | chr5_3:69012558-69012577 | None:intergenic | 35.0% | |
| CAATAAAATCTCAGCCTAAC+CGG | - | chr5_3:69012832-69012851 | None:intergenic | 35.0% | |
| !!! | GTTTTTTTATGGACTGGCAT+CGG | - | chr5_3:69012984-69013003 | None:intergenic | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | + | chr5_3:69013251-69013270 | Msa0827630:intron | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | + | chr5_3:69013255-69013274 | Msa0827630:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr5_3:69013319-69013338 | Msa0827630:intron | 35.0% |
| !!! | ACGGAGGGAGTAATTTTTTT+TGG | + | chr5_3:69013374-69013393 | Msa0827630:intron | 35.0% |
| TTATGTATATGTGTAGGGTG+TGG | + | chr5_3:69013753-69013772 | Msa0827630:intron | 35.0% | |
| TTGCCCCTCCTATTATTATA+AGG | - | chr5_3:69013807-69013826 | None:intergenic | 35.0% | |
| TACCTAGAAAATGAAGAGAG+TGG | - | chr5_3:69013882-69013901 | None:intergenic | 35.0% | |
| AACACACGACTTTGATAGAT+GGG | - | chr5_3:69014090-69014109 | None:intergenic | 35.0% | |
| CAAAGTCGTGTGTTCAAATT+CGG | + | chr5_3:69014096-69014115 | Msa0827630:intron | 35.0% | |
| !!! | AGGAGAGCATGATTTTTTGA+AGG | + | chr5_3:69014396-69014415 | Msa0827630:intron | 35.0% |
| AGATAATTGTGTTGAACCTG+TGG | + | chr5_3:69014438-69014457 | Msa0827630:CDS | 35.0% | |
| ATTAGTAGCACACCTAATCT+TGG | - | chr5_3:69014493-69014512 | None:intergenic | 35.0% | |
| !! | GGCCTATGAATTTGTTAAGA+CGG | - | chr5_3:69014546-69014565 | None:intergenic | 35.0% |
| TCTTAACAAATTCATAGGCC+CGG | + | chr5_3:69014546-69014565 | Msa0827630:intron | 35.0% | |
| !!! | GGCCCGGTTTTAATTTTATA+AGG | + | chr5_3:69014562-69014581 | Msa0827630:intron | 35.0% |
| !!! | CTTATTTTTTTTTTGGGGCC+CGG | - | chr5_3:69014608-69014627 | None:intergenic | 35.0% |
| !! | TATTTTGGGCCCCAAAAAAT+TGG | + | chr5_3:69014789-69014808 | Msa0827630:intron | 35.0% |
| TAGAAACATATAAACAGGGC+CGG | - | chr5_3:69014853-69014872 | None:intergenic | 35.0% | |
| TAAAAACTGCACTATGAACC+CGG | + | chr5_3:69014966-69014985 | Msa0827630:intron | 35.0% | |
| ! | CTTTGGTGACATTAATGTCA+CGG | + | chr5_3:69014995-69015014 | Msa0827630:intron | 35.0% |
| CTTGTGTGACATTAATGTCA+CGG | - | chr5_3:69015117-69015136 | None:intergenic | 35.0% | |
| AATAAGCGTTTGGCAATGTT+TGG | - | chr5_3:69015193-69015212 | None:intergenic | 35.0% | |
| AACAAGTGAAGGAAAGGAAA+GGG | - | chr5_3:69015219-69015238 | None:intergenic | 35.0% | |
| TAACAAGTGAAGGAAAGGAA+AGG | - | chr5_3:69015220-69015239 | None:intergenic | 35.0% | |
| AAACGTAACAAGTGAAGGAA+AGG | - | chr5_3:69015225-69015244 | None:intergenic | 35.0% | |
| AGATGGAATAAGGTTTGTGG+AGG | - | chr5_3:69011411-69011430 | None:intergenic | 40.0% | |
| TGTGATGAGTGGAAGAAAGA+TGG | - | chr5_3:69011428-69011447 | None:intergenic | 40.0% | |
| ! | GATGCTCCTTTTCCTTGTAA+TGG | + | chr5_3:69011659-69011678 | Msa0827630:CDS | 40.0% |
| CGAACCACTCATAATAAGGA+GGG | - | chr5_3:69011712-69011731 | None:intergenic | 40.0% | |
| CCTCCTTATTATGAGTGGTT+CGG | + | chr5_3:69011710-69011729 | Msa0827630:CDS | 40.0% | |
| CTCCTTATTATGAGTGGTTC+GGG | + | chr5_3:69011711-69011730 | Msa0827630:CDS | 40.0% | |
| TACCCGAACCACTCATAATA+AGG | - | chr5_3:69011716-69011735 | None:intergenic | 40.0% | |
| !!! | TGTTTTGTTGTTGTCTGTGC+AGG | + | chr5_3:69011823-69011842 | Msa0827630:intron | 40.0% |
| ATCAAACATGGACCGTTTGA+TGG | + | chr5_3:69011902-69011921 | Msa0827630:CDS | 40.0% | |
| AAATAGGGGGCGATATTATC+AGG | + | chr5_3:69012075-69012094 | Msa0827630:intron | 40.0% | |
| AATAGGGGGCGATATTATCA+GGG | + | chr5_3:69012076-69012095 | Msa0827630:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+TGG | - | chr5_3:69012423-69012442 | None:intergenic | 40.0% | |
| ! | CGGTTAGGCTGAGATTTTAT+TGG | + | chr5_3:69012830-69012849 | Msa0827630:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr5_3:69013359-69013378 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | + | chr5_3:69013254-69013273 | Msa0827630:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr5_3:69013359-69013378 | Msa0827630:intron | 40.0% |
| GCAAGTTTGTGACCTAAGTA+AGG | + | chr5_3:69013450-69013469 | Msa0827630:intron | 40.0% | |
| TATGCTTTCTCTACCACTGA+AGG | - | chr5_3:69013841-69013860 | None:intergenic | 40.0% | |
| ! | TGCCACTCTCTTCATTTTCT+AGG | + | chr5_3:69013877-69013896 | Msa0827630:CDS | 40.0% |
| GAACACACGACTTTGATAGA+TGG | - | chr5_3:69014091-69014110 | None:intergenic | 40.0% | |
| !!! | GATATGGTTTTTTCCCAGGT+AGG | + | chr5_3:69014184-69014203 | Msa0827630:intron | 40.0% |
| AGCGGAACATAAACATGAGT+TGG | + | chr5_3:69014225-69014244 | Msa0827630:intron | 40.0% | |
| GCGGAACATAAACATGAGTT+GGG | + | chr5_3:69014226-69014245 | Msa0827630:intron | 40.0% | |
| TTTGGGTGATGAATTACCAC+AGG | - | chr5_3:69014457-69014476 | None:intergenic | 40.0% | |
| GTGGTAATTCATCACCCAAA+AGG | + | chr5_3:69014457-69014476 | Msa0827630:CDS | 40.0% | |
| ! | TTGGTACAGTGTGTCCTTTT+GGG | - | chr5_3:69014474-69014493 | None:intergenic | 40.0% |
| GGCCGTCTTAACAAATTCAT+AGG | + | chr5_3:69014541-69014560 | Msa0827630:intron | 40.0% | |
| ACCTCACACTCAACAAAAAG+TGG | + | chr5_3:69014674-69014693 | Msa0827630:intron | 40.0% | |
| AATGAGTGGTCTTCTAACCA+TGG | + | chr5_3:69014872-69014891 | Msa0827630:intron | 40.0% | |
| ATGAGTGGTCTTCTAACCAT+GGG | + | chr5_3:69014873-69014892 | Msa0827630:intron | 40.0% | |
| AAAAACTGCACTATGAACCC+GGG | + | chr5_3:69014967-69014986 | Msa0827630:intron | 40.0% | |
| ATTGTCATTGCCATTGCATC+TGG | + | chr5_3:69015040-69015059 | Msa0827630:intron | 40.0% | |
| TTGTCATTGCCATTGCATCT+GGG | + | chr5_3:69015041-69015060 | Msa0827630:intron | 40.0% | |
| GTGACATTAGATGTGTTGTG+TGG | - | chr5_3:69015067-69015086 | None:intergenic | 40.0% | |
| ATCTAATGTCACCCAATGTG+TGG | + | chr5_3:69015075-69015094 | Msa0827630:intron | 40.0% | |
| TTAAATCTGGGCCACACATT+GGG | - | chr5_3:69015089-69015108 | None:intergenic | 40.0% | |
| ATTAAATCTGGGCCACACAT+TGG | - | chr5_3:69015090-69015109 | None:intergenic | 40.0% | |
| GTCACGGTGACATTAAATCT+GGG | - | chr5_3:69015011-69015030 | None:intergenic | 40.0% | |
| TGTCACGGTGACATTAAATC+TGG | - | chr5_3:69015010-69015029 | None:intergenic | 40.0% | |
| TGCAACATTAAATGGTCAGG+GGG | - | chr5_3:69015155-69015174 | None:intergenic | 40.0% | |
| GTGCAACATTAAATGGTCAG+GGG | - | chr5_3:69015156-69015175 | None:intergenic | 40.0% | |
| GGTGCAACATTAAATGGTCA+GGG | - | chr5_3:69015157-69015176 | None:intergenic | 40.0% | |
| ! | ATGGAGGGTGCAACATTAAA+TGG | - | chr5_3:69015163-69015182 | None:intergenic | 40.0% |
| ACAAGTGAAGGAAAGGAAAG+GGG | - | chr5_3:69015218-69015237 | None:intergenic | 40.0% | |
| CTACCACTAAGACAAAGTGA+TGG | + | chr5_3:69015380-69015399 | Msa0827630:intron | 40.0% | |
| TGACCATCACTTTGTCTTAG+TGG | - | chr5_3:69015386-69015405 | None:intergenic | 40.0% | |
| CTCTCTCCATATAAGTCACA+AGG | - | chr5_3:69015532-69015551 | None:intergenic | 40.0% | |
| GATGAGCTAATACGTCTCTT+AGG | + | chr5_3:69015966-69015985 | Msa0827630:exon | 40.0% | |
| TCCAAAGCTAACATGGATTC+AGG | + | chr5_3:69016114-69016133 | Msa0827630:three_prime_UTR | 40.0% | |
| CTTCATGGGTTTCGAACAAG+TGG | + | chr5_3:69011566-69011585 | Msa0827630:CDS | 45.0% | |
| TCGACCCTCCTTATTATGAG+TGG | + | chr5_3:69011705-69011724 | Msa0827630:CDS | 45.0% | |
| CCGAACCACTCATAATAAGG+AGG | - | chr5_3:69011713-69011732 | None:intergenic | 45.0% | |
| TGGTCTTCTTGGATTCTCAC+AGG | + | chr5_3:69011922-69011941 | Msa0827630:CDS | 45.0% | |
| ATAGGGGGCGATATTATCAG+GGG | + | chr5_3:69012077-69012096 | Msa0827630:intron | 45.0% | |
| TCAGCCTAACCGGAAATCAT+GGG | - | chr5_3:69012822-69012841 | None:intergenic | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr5_3:69013358-69013377 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr5_3:69013358-69013377 | Msa0827630:intron | 45.0% |
| CAAACTTGCGTTACGAAGCT+CGG | - | chr5_3:69013439-69013458 | None:intergenic | 45.0% | |
| TAATAGGAGGGGCAAAGTTC+AGG | + | chr5_3:69013812-69013831 | Msa0827630:CDS | 45.0% | |
| AATAGGAGGGGCAAAGTTCA+GGG | + | chr5_3:69013813-69013832 | Msa0827630:CDS | 45.0% | |
| GATGGGAGACTAAACTCGAT+GGG | - | chr5_3:69014073-69014092 | None:intergenic | 45.0% | |
| AGATGGGAGACTAAACTCGA+TGG | - | chr5_3:69014074-69014093 | None:intergenic | 45.0% | |
| ! | CTTGGTACAGTGTGTCCTTT+TGG | - | chr5_3:69014475-69014494 | None:intergenic | 45.0% |
| GGACACACTGTACCAAGATT+AGG | + | chr5_3:69014478-69014497 | Msa0827630:CDS | 45.0% | |
| !!! | GCCACTTTTTGTTGAGTGTG+AGG | - | chr5_3:69014678-69014697 | None:intergenic | 45.0% |
| ! | GTCTGTACAGCTTGCTTTAG+TGG | - | chr5_3:69014705-69014724 | None:intergenic | 45.0% |
| TTTGGGCCCCAAAAAATTGG+AGG | + | chr5_3:69014792-69014811 | Msa0827630:intron | 45.0% | |
| GCAATGGCAATGACAATGTG+TGG | - | chr5_3:69015037-69015056 | None:intergenic | 45.0% | |
| AAATGGTCAGGGGGTTCATA+GGG | - | chr5_3:69015146-69015165 | None:intergenic | 45.0% | |
| TAAATGGTCAGGGGGTTCAT+AGG | - | chr5_3:69015147-69015166 | None:intergenic | 45.0% | |
| GGGTGCAACATTAAATGGTC+AGG | - | chr5_3:69015158-69015177 | None:intergenic | 45.0% | |
| ! | ATGTTTGGTGGTTGGATGGA+GGG | - | chr5_3:69015178-69015197 | None:intergenic | 45.0% |
| ! | AATGTTTGGTGGTTGGATGG+AGG | - | chr5_3:69015179-69015198 | None:intergenic | 45.0% |
| ! | GTTTGGCAATGTTTGGTGGT+TGG | - | chr5_3:69015186-69015205 | None:intergenic | 45.0% |
| AAGCGTTTGGCAATGTTTGG+TGG | - | chr5_3:69015190-69015209 | None:intergenic | 45.0% | |
| GAAAGGGGCTAATAAGCGTT+TGG | - | chr5_3:69015203-69015222 | None:intergenic | 45.0% | |
| ! | ATTTTTGAACCCCCTGACTC+AGG | + | chr5_3:69015745-69015764 | Msa0827630:intron | 45.0% |
| TCTGTGGTCCAAAGCTAACA+TGG | + | chr5_3:69016107-69016126 | Msa0827630:three_prime_UTR | 45.0% | |
| ! | GCCTGAATCCATGTTAGCTT+TGG | - | chr5_3:69016118-69016137 | None:intergenic | 45.0% |
| AGCTAACATGGATTCAGGCT+CGG | + | chr5_3:69016119-69016138 | Msa0827630:three_prime_UTR | 45.0% | |
| !! | TCAATTAAATTAAATAAAAT+AGG | - | chr5_3:69011486-69011505 | None:intergenic | 5.0% |
| !!! | TTATTATTTTTTTCATAATT+TGG | + | chr5_3:69011744-69011763 | Msa0827630:intron | 5.0% |
| !!! | TATTATTTTTTTCATAATTT+GGG | + | chr5_3:69011745-69011764 | Msa0827630:intron | 5.0% |
| !!! | CATATAAAAAAAATATATTT+TGG | + | chr5_3:69014774-69014793 | Msa0827630:intron | 5.0% |
| !!! | AATATTATTTTTAAAAGAAT+AGG | - | chr5_3:69016083-69016102 | None:intergenic | 5.0% |
| ! | GGACCGTTTGATGGTCTTCT+TGG | + | chr5_3:69011911-69011930 | Msa0827630:CDS | 50.0% |
| !! | ATATTATCAGGGGCACTGCC+AGG | + | chr5_3:69012087-69012106 | Msa0827630:CDS | 50.0% |
| CATACCTTCTCCTGAAGACC+TGG | - | chr5_3:69012108-69012127 | None:intergenic | 50.0% | |
| CAGCCTAACCGGAAATCATG+GGG | - | chr5_3:69012821-69012840 | None:intergenic | 50.0% | |
| CTCAGCCTAACCGGAAATCA+TGG | - | chr5_3:69012823-69012842 | None:intergenic | 50.0% | |
| ! | AAAGTTCAGGGCACCTTCAG+TGG | + | chr5_3:69013825-69013844 | Msa0827630:CDS | 50.0% |
| ! | TACAGCTTGCTTTAGTGGCG+TGG | - | chr5_3:69014700-69014719 | None:intergenic | 50.0% |
| !!! | ACCGGGCCTCCAATTTTTTG+GGG | - | chr5_3:69014801-69014820 | None:intergenic | 50.0% |
| !!! | CACCGGGCCTCCAATTTTTT+GGG | - | chr5_3:69014802-69014821 | None:intergenic | 50.0% |
| !!! | ACACCGGGCCTCCAATTTTT+TGG | - | chr5_3:69014803-69014822 | None:intergenic | 50.0% |
| AGTGGTCTTCTAACCATGGG+CGG | + | chr5_3:69014876-69014895 | Msa0827630:intron | 50.0% | |
| GCGGAGCTACATGTCATTGA+GGG | + | chr5_3:69014895-69014914 | Msa0827630:intron | 50.0% | |
| AATGTCACCAAAGAGCCACC+CGG | - | chr5_3:69014988-69015007 | None:intergenic | 50.0% | |
| AATGGTCAGGGGGTTCATAG+GGG | - | chr5_3:69015145-69015164 | None:intergenic | 50.0% | |
| ! | GGCAATGTTTGGTGGTTGGA+TGG | - | chr5_3:69015182-69015201 | None:intergenic | 50.0% |
| TTGCTAGGAACCTGAGTCAG+GGG | - | chr5_3:69015758-69015777 | None:intergenic | 50.0% | |
| GTTGCTAGGAACCTGAGTCA+GGG | - | chr5_3:69015759-69015778 | None:intergenic | 50.0% | |
| TTAGAAGCAGTGGCGTTGCT+AGG | - | chr5_3:69015773-69015792 | None:intergenic | 50.0% | |
| ! | TGAGTGGTTCGGGTACAACG+AGG | + | chr5_3:69011721-69011740 | Msa0827630:CDS | 55.0% |
| ACTGCCAGGTCTTCAGGAGA+AGG | + | chr5_3:69012101-69012120 | Msa0827630:CDS | 55.0% | |
| TGCGGAAATCATGGGGTGGT+GGG | - | chr5_3:69012795-69012814 | None:intergenic | 55.0% | |
| TGGGGTGGTGCGGAAATCAT+GGG | - | chr5_3:69012803-69012822 | None:intergenic | 55.0% | |
| ATGGGGTGGTGCGGAAATCA+TGG | - | chr5_3:69012804-69012823 | None:intergenic | 55.0% | |
| CCTAACCGGAAATCATGGGG+TGG | - | chr5_3:69012818-69012837 | None:intergenic | 55.0% | |
| CCACCCCATGATTTCCGGTT+AGG | + | chr5_3:69012815-69012834 | Msa0827630:intron | 55.0% | |
| GCCCCAAAAAATTGGAGGCC+CGG | + | chr5_3:69014797-69014816 | Msa0827630:intron | 55.0% | |
| ATGACATGTAGCTCCGCCCA+TGG | - | chr5_3:69014892-69014911 | None:intergenic | 55.0% | |
| GGCGGAGCTACATGTCATTG+AGG | + | chr5_3:69014894-69014913 | Msa0827630:intron | 55.0% | |
| AACTGCACTATGAACCCGGG+TGG | + | chr5_3:69014970-69014989 | Msa0827630:intron | 55.0% | |
| TATGAACCCGGGTGGCTCTT+TGG | + | chr5_3:69014978-69014997 | Msa0827630:intron | 55.0% | |
| ATGTCACCAAAGAGCCACCC+GGG | - | chr5_3:69014987-69015006 | None:intergenic | 55.0% | |
| GTTGTGTGGCCCAGATGCAA+TGG | - | chr5_3:69015053-69015072 | None:intergenic | 55.0% | |
| TGCTAGGAACCTGAGTCAGG+GGG | - | chr5_3:69015757-69015776 | None:intergenic | 55.0% | |
| CGTTGCTAGGAACCTGAGTC+AGG | - | chr5_3:69015760-69015779 | None:intergenic | 55.0% | |
| GTGCGGAAATCATGGGGTGG+TGG | - | chr5_3:69012796-69012815 | None:intergenic | 60.0% | |
| GTGGTGCGGAAATCATGGGG+TGG | - | chr5_3:69012799-69012818 | None:intergenic | 60.0% | |
| GGGGTGGTGCGGAAATCATG+GGG | - | chr5_3:69012802-69012821 | None:intergenic | 60.0% | |
| CCGGAAATCATGGGGTGGTG+CGG | - | chr5_3:69012813-69012832 | None:intergenic | 60.0% | |
| CCGCACCACCCCATGATTTC+CGG | + | chr5_3:69012810-69012829 | Msa0827630:intron | 60.0% | |
| !! | AGGGGCACTGCCAGGTCTTC+AGG | + | chr5_3:69012095-69012114 | Msa0827630:CDS | 65.0% |
| TCGAGGCTGGGCGACGACAC+CGG | - | chr5_3:69014819-69014838 | None:intergenic | 70.0% | |
| GTGTCGTCGCCCAGCCTCGA+CGG | + | chr5_3:69014819-69014838 | Msa0827630:intron | 70.0% | |
| TGTCGTCGCCCAGCCTCGAC+GGG | + | chr5_3:69014820-69014839 | Msa0827630:intron | 70.0% | |
| !! | GCCCAGCCTCGACGGGCTAT+GGG | + | chr5_3:69014827-69014846 | Msa0827630:intron | 70.0% |
| GCCCATAGCCCGTCGAGGCT+GGG | - | chr5_3:69014831-69014850 | None:intergenic | 70.0% | |
| !! | AGCCTCGACGGGCTATGGGC+CGG | + | chr5_3:69014831-69014850 | Msa0827630:intron | 70.0% |
| CGAGGCTGGGCGACGACACC+GGG | - | chr5_3:69014818-69014837 | None:intergenic | 75.0% | |
| !! | CGCCCAGCCTCGACGGGCTA+TGG | + | chr5_3:69014826-69014845 | Msa0827630:intron | 75.0% |
| GGCCCATAGCCCGTCGAGGC+TGG | - | chr5_3:69014832-69014851 | None:intergenic | 75.0% | |
| ! | GGCCGGCCCATAGCCCGTCG+AGG | - | chr5_3:69014836-69014855 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 69011350 | 69016236 | 69011350 | ID=Msa0827630;Name=Msa0827630 |
| chr5_3 | mRNA | 69011350 | 69016236 | 69011350 | ID=Msa0827630-mRNA-1;Parent=Msa0827630;Name=Msa0827630-mRNA-1;_AED=0.12;_eAED=0.12;_QI=165|1|1|1|1|1|6|261|231 |
| chr5_3 | exon | 69011350 | 69011742 | 69011350 | ID=Msa0827630-mRNA-1:exon:21692;Parent=Msa0827630-mRNA-1 |
| chr5_3 | exon | 69011845 | 69011943 | 69011845 | ID=Msa0827630-mRNA-1:exon:21693;Parent=Msa0827630-mRNA-1 |
| chr5_3 | exon | 69012081 | 69012122 | 69012081 | ID=Msa0827630-mRNA-1:exon:21694;Parent=Msa0827630-mRNA-1 |
| chr5_3 | exon | 69013769 | 69013898 | 69013769 | ID=Msa0827630-mRNA-1:exon:21695;Parent=Msa0827630-mRNA-1 |
| chr5_3 | exon | 69014398 | 69014499 | 69014398 | ID=Msa0827630-mRNA-1:exon:21696;Parent=Msa0827630-mRNA-1 |
| chr5_3 | exon | 69015881 | 69016236 | 69015881 | ID=Msa0827630-mRNA-1:exon:21697;Parent=Msa0827630-mRNA-1 |
| chr5_3 | five_prime_UTR | 69011350 | 69011514 | 69011350 | ID=Msa0827630-mRNA-1:five_prime_utr;Parent=Msa0827630-mRNA-1 |
| chr5_3 | CDS | 69011515 | 69011742 | 69011515 | ID=Msa0827630-mRNA-1:cds;Parent=Msa0827630-mRNA-1 |
| chr5_3 | CDS | 69011845 | 69011943 | 69011845 | ID=Msa0827630-mRNA-1:cds;Parent=Msa0827630-mRNA-1 |
| chr5_3 | CDS | 69012081 | 69012122 | 69012081 | ID=Msa0827630-mRNA-1:cds;Parent=Msa0827630-mRNA-1 |
| chr5_3 | CDS | 69013769 | 69013898 | 69013769 | ID=Msa0827630-mRNA-1:cds;Parent=Msa0827630-mRNA-1 |
| chr5_3 | CDS | 69014398 | 69014499 | 69014398 | ID=Msa0827630-mRNA-1:cds;Parent=Msa0827630-mRNA-1 |
| chr5_3 | CDS | 69015881 | 69015975 | 69015881 | ID=Msa0827630-mRNA-1:cds;Parent=Msa0827630-mRNA-1 |
| chr5_3 | three_prime_UTR | 69015976 | 69016236 | 69015976 | ID=Msa0827630-mRNA-1:three_prime_utr;Parent=Msa0827630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
