Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773380 | sp|Q9VDL1|LOVG_DROME | 30.045 | 223 | 137 | 9 | 6 | 216 | 24 | 239 | 2.74e-18 | 84.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773380 | G7KBG3 | 92.641 | 231 | 13 | 2 | 1 | 231 | 1 | 227 | 1.13e-154 | 437 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013280 | Msa0773380 | 0.805457 | 1.322455e-49 | -8.615850e-47 |
| Msa0732350 | Msa0773380 | 0.843015 | 1.816944e-58 | -8.615850e-47 |
| Msa0773380 | Msa0827630 | 0.992254 | 3.358236e-192 | -8.615850e-47 |
| Msa0773380 | Msa1408180 | 0.803678 | 3.108333e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773380 | MtrunA17_Chr5g0427111 | 92.641 | 231 | 13 | 2 | 1 | 231 | 1 | 227 | 2.18e-158 | 437 |
| Msa0773380 | MtrunA17_Chr5g0412511 | 59.740 | 231 | 83 | 3 | 1 | 226 | 1 | 226 | 5.09e-99 | 287 |
| Msa0773380 | MtrunA17_Chr7g0254691 | 51.220 | 205 | 100 | 0 | 11 | 215 | 7 | 211 | 2.48e-75 | 228 |
| Msa0773380 | MtrunA17_Chr6g0464361 | 82.895 | 76 | 10 | 1 | 1 | 76 | 1 | 73 | 2.12e-41 | 135 |
| Msa0773380 | MtrunA17_Chr1g0192901 | 28.033 | 239 | 114 | 11 | 9 | 198 | 412 | 641 | 4.76e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773380 | AT4G24380.1 | 67.431 | 218 | 71 | 0 | 7 | 224 | 6 | 223 | 1.87e-115 | 330 |
| Msa0773380 | AT4G24380.3 | 60.000 | 245 | 71 | 1 | 7 | 224 | 6 | 250 | 1.23e-109 | 316 |
| Msa0773380 | AT4G24380.2 | 72.050 | 161 | 45 | 0 | 7 | 167 | 6 | 166 | 2.53e-89 | 261 |
| Msa0773380 | AT5G65400.1 | 58.222 | 225 | 88 | 2 | 11 | 230 | 28 | 251 | 1.14e-88 | 262 |
| Msa0773380 | AT5G65400.2 | 58.222 | 225 | 88 | 2 | 11 | 230 | 46 | 269 | 2.70e-88 | 262 |
| Msa0773380 | AT4G24380.5 | 76.923 | 117 | 27 | 0 | 7 | 123 | 6 | 122 | 2.14e-68 | 206 |
| Msa0773380 | AT4G24380.6 | 63.087 | 149 | 55 | 0 | 76 | 224 | 53 | 201 | 3.99e-67 | 206 |
| Msa0773380 | AT4G24380.4 | 62.500 | 144 | 27 | 1 | 7 | 123 | 6 | 149 | 6.67e-63 | 193 |
| Msa0773380 | AT1G09280.1 | 29.148 | 223 | 119 | 8 | 8 | 198 | 349 | 564 | 3.73e-18 | 83.2 |
Find 64 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAAATAAAATAGGAATTA+TGG | 0.175184 | 5_2:-48336124 | None:intergenic |
| GAATCCAATTTATAGGATTC+AGG | 0.217310 | 5_2:-48336025 | None:intergenic |
| ATGAATTGAATCCAATTTAT+AGG | 0.234650 | 5_2:-48336032 | None:intergenic |
| AAACCCTGAATCCTATAAAT+TGG | 0.246445 | 5_2:+48336021 | Msa0773380:five_prime_UTR |
| TCAATTAAATTAAATAAAAT+AGG | 0.247280 | 5_2:-48336132 | None:intergenic |
| CTTGGTACAGTGTGTCCTTT+TGG | 0.255612 | 5_2:-48338848 | None:intergenic |
| TTGCCCCTCCTATTATTATA+AGG | 0.258599 | 5_2:-48338181 | None:intergenic |
| AAAGCATATTCTTCACAAAT+TGG | 0.265190 | 5_2:+48338230 | Msa0773380:CDS |
| GTGAAATTCCTTATAATAAT+AGG | 0.268426 | 5_2:+48338173 | Msa0773380:CDS |
| GGACCGTTTGATGGTCTTCT+TGG | 0.283927 | 5_2:+48336562 | Msa0773380:CDS |
| CCAAGATTTATGTGTCTTCA+TGG | 0.291824 | 5_2:+48336200 | Msa0773380:CDS |
| TAATAGGAGGGGCAAAGTTC+AGG | 0.313761 | 5_2:+48338189 | Msa0773380:CDS |
| CTCCTTATTATGAGTGGTTC+GGG | 0.359841 | 5_2:+48336360 | Msa0773380:CDS |
| AGGGGCACTGCCAGGTCTTC+AGG | 0.365615 | 5_2:+48336746 | Msa0773380:CDS |
| CCTCCTTATTATGAGTGGTT+CGG | 0.369390 | 5_2:+48336359 | Msa0773380:CDS |
| GCCTGAATCCATGTTAGCTT+TGG | 0.370714 | 5_2:-48339587 | None:intergenic |
| AGTGGAAGAAAGATGGAATA+AGG | 0.378734 | 5_2:-48336067 | None:intergenic |
| GATGAGCTAATACGTCTCTT+AGG | 0.381520 | 5_2:+48339438 | Msa0773380:exon |
| TACCCGAACCACTCATAATA+AGG | 0.388373 | 5_2:-48336362 | None:intergenic |
| CCATGAAGACACATAAATCT+TGG | 0.393495 | 5_2:-48336200 | None:intergenic |
| TCCAAAGCTAACATGGATTC+AGG | 0.398376 | 5_2:+48339586 | Msa0773380:three_prime_UTR |
| ATTATAAGGAATTTCACTTT+GGG | 0.410361 | 5_2:-48338167 | None:intergenic |
| ATCAAACATGGACCGTTTGA+TGG | 0.413598 | 5_2:+48336553 | Msa0773380:CDS |
| TATTATAAGGAATTTCACTT+TGG | 0.427378 | 5_2:-48338168 | None:intergenic |
| AATCCAATTTATAGGATTCA+GGG | 0.431564 | 5_2:-48336024 | None:intergenic |
| AATGGCAAATCTTCTGTTGA+AGG | 0.445603 | 5_2:+48336326 | Msa0773380:CDS |
| ACAGAAGATTTGCCATTACA+AGG | 0.448602 | 5_2:-48336320 | None:intergenic |
| GGACACACTGTACCAAGATT+AGG | 0.480578 | 5_2:+48338854 | Msa0773380:CDS |
| AATAGGAGGGGCAAAGTTCA+GGG | 0.486880 | 5_2:+48338190 | Msa0773380:CDS |
| CAAGATTTATGTGTCTTCAT+GGG | 0.487719 | 5_2:+48336201 | Msa0773380:CDS |
| TGGTCTTCTTGGATTCTCAC+AGG | 0.488533 | 5_2:+48336573 | Msa0773380:CDS |
| ATTAGTAGCACACCTAATCT+TGG | 0.492125 | 5_2:-48338866 | None:intergenic |
| GATTTGCCATTACAAGGAAA+AGG | 0.494747 | 5_2:-48336314 | None:intergenic |
| ATATTATCAGGGGCACTGCC+AGG | 0.501875 | 5_2:+48336738 | Msa0773380:CDS |
| GAAAGATGGAATAAGGTTTG+TGG | 0.508983 | 5_2:-48336060 | None:intergenic |
| ATTTAATTGAAGAAGAGAGA+TGG | 0.516375 | 5_2:+48336145 | Msa0773380:exon |
| TCTTTCTATGAAACTCATCA+TGG | 0.528093 | 5_2:-48339371 | None:intergenic |
| CATACCTTCTCCTGAAGACC+TGG | 0.535143 | 5_2:-48336756 | None:intergenic |
| TCGACCCTCCTTATTATGAG+TGG | 0.538420 | 5_2:+48336354 | Msa0773380:CDS |
| GTGGTAATTCATCACCCAAA+AGG | 0.539105 | 5_2:+48338833 | Msa0773380:CDS |
| TATTATATCTGAAAATAAAG+AGG | 0.545461 | 5_2:+48339405 | Msa0773380:CDS |
| AGCTAACATGGATTCAGGCT+CGG | 0.548144 | 5_2:+48339591 | Msa0773380:three_prime_UTR |
| ATTGTATTTGTTGTGATGAG+TGG | 0.548332 | 5_2:-48336085 | None:intergenic |
| TTTGGGTGATGAATTACCAC+AGG | 0.551356 | 5_2:-48338830 | None:intergenic |
| AAAGTTCAGGGCACCTTCAG+TGG | 0.556647 | 5_2:+48338202 | Msa0773380:CDS |
| CTTCATGGGTTTCGAACAAG+TGG | 0.558594 | 5_2:+48336215 | Msa0773380:CDS |
| TGTGATGAGTGGAAGAAAGA+TGG | 0.564457 | 5_2:-48336074 | None:intergenic |
| TCTGTGGTCCAAAGCTAACA+TGG | 0.568715 | 5_2:+48339579 | Msa0773380:three_prime_UTR |
| ACTGCCAGGTCTTCAGGAGA+AGG | 0.577964 | 5_2:+48336752 | Msa0773380:CDS |
| ATTCCTTATAATAATAGGAG+GGG | 0.578464 | 5_2:+48338178 | Msa0773380:CDS |
| TATGCTTTCTCTACCACTGA+AGG | 0.584580 | 5_2:-48338215 | None:intergenic |
| AAATTCCTTATAATAATAGG+AGG | 0.592167 | 5_2:+48338176 | Msa0773380:CDS |
| AATCCAAGAAGACCATCAAA+CGG | 0.617555 | 5_2:-48336565 | None:intergenic |
| AATTCCTTATAATAATAGGA+GGG | 0.618651 | 5_2:+48338177 | Msa0773380:CDS |
| ATAGGAATATATAAGATGTG+TGG | 0.621438 | 5_2:-48339534 | None:intergenic |
| CCGAACCACTCATAATAAGG+AGG | 0.630666 | 5_2:-48336359 | None:intergenic |
| TACCTAGAAAATGAAGAGAG+TGG | 0.639422 | 5_2:-48338256 | None:intergenic |
| CGAACCACTCATAATAAGGA+GGG | 0.642917 | 5_2:-48336358 | None:intergenic |
| AGATAATTGTGTTGAACCTG+TGG | 0.656624 | 5_2:+48338814 | Msa0773380:CDS |
| GAGGATTACATGATCAAACA+TGG | 0.657463 | 5_2:+48336541 | Msa0773380:CDS |
| AGATGGAATAAGGTTTGTGG+AGG | 0.657667 | 5_2:-48336057 | None:intergenic |
| TGAGTGTCTGCAATATATTG+AGG | 0.665567 | 5_2:+48336522 | Msa0773380:CDS |
| AATAAAATAGGAATTATGGA+CGG | 0.670078 | 5_2:-48336120 | None:intergenic |
| TGAGTGGTTCGGGTACAACG+AGG | 0.765548 | 5_2:+48336370 | Msa0773380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATTTTTTTTTTTAAAA+TGG | - | chr5_2:48339006-48339025 | None:intergenic | 0.0% |
| !!! | ATATAAAAAAAATATATTTT+GGG | + | chr5_2:48339151-48339170 | Msa0773380:intron | 0.0% |
| !! | ATTAAATAAAATAGGAATTA+TGG | - | chr5_2:48336127-48336146 | None:intergenic | 10.0% |
| !!! | TTAACTGATTATTATTATTT+TGG | + | chr5_2:48338327-48338346 | Msa0773380:intron | 10.0% |
| !! | AAAAATTATAAATCATACTT+TGG | + | chr5_2:48339016-48339035 | Msa0773380:intron | 10.0% |
| !! | ATCAAATATTGAAAATTTGA+AGG | + | chr5_2:48336635-48336654 | Msa0773380:intron | 15.0% |
| !!! | TATGTTTGATTTGATTTATA+AGG | + | chr5_2:48336670-48336689 | Msa0773380:intron | 15.0% |
| !!! | ATCTTTCTTTTTGAAAAATA+AGG | - | chr5_2:48337030-48337049 | None:intergenic | 15.0% |
| !! | AAAATTATTGAACTTATCTT+CGG | - | chr5_2:48337685-48337704 | None:intergenic | 15.0% |
| !!! | TTATCTCTAGTAATTTTTTT+TGG | + | chr5_2:48337751-48337770 | Msa0773380:intron | 15.0% |
| !! | TAAATACATTGAAAATTGAA+AGG | - | chr5_2:48338293-48338312 | None:intergenic | 15.0% |
| !! | CTTGCATATATTATTTATAA+AGG | + | chr5_2:48338361-48338380 | Msa0773380:intron | 15.0% |
| !! | ATGCAAAAAAAATTAAATTC+CGG | + | chr5_2:48338962-48338981 | Msa0773380:intron | 15.0% |
| !!! | AAAATGGCTTATTTTTTTTT+GGG | - | chr5_2:48338990-48339009 | None:intergenic | 15.0% |
| !!! | TAAAATGGCTTATTTTTTTT+TGG | - | chr5_2:48338991-48339010 | None:intergenic | 15.0% |
| !! | TATTATATCTGAAAATAAAG+AGG | + | chr5_2:48339405-48339424 | Msa0773380:CDS | 15.0% |
| !! | AAAAATAATATTATTGTCTG+TGG | + | chr5_2:48339563-48339582 | Msa0773380:three_prime_UTR | 15.0% |
| !!! | ATGTAAAATGCATTTTATAT+AGG | - | chr5_2:48339685-48339704 | None:intergenic | 15.0% |
| !! | ATGAATTGAATCCAATTTAT+AGG | - | chr5_2:48336035-48336054 | None:intergenic | 20.0% |
| !! | AATAAAATAGGAATTATGGA+CGG | - | chr5_2:48336123-48336142 | None:intergenic | 20.0% |
| !! | TGTTTGAATTTGACAAAATA+GGG | + | chr5_2:48336711-48336730 | Msa0773380:intron | 20.0% |
| !!! | ATTTTTATTTTATCCCTAGA+CGG | + | chr5_2:48336856-48336875 | Msa0773380:intron | 20.0% |
| !!! | AATAAGGTATCATTAAGTTA+TGG | - | chr5_2:48337014-48337033 | None:intergenic | 20.0% |
| !! | ATTGTGTAAATAATGACATA+AGG | + | chr5_2:48337318-48337337 | Msa0773380:intron | 20.0% |
| !! | TTGTGTAAATAATGACATAA+GGG | + | chr5_2:48337319-48337338 | Msa0773380:intron | 20.0% |
| !!! | AGGGCAATTATTATATTTTT+TGG | + | chr5_2:48337338-48337357 | Msa0773380:intron | 20.0% |
| !!! | GGGCAATTATTATATTTTTT+GGG | + | chr5_2:48337339-48337358 | Msa0773380:intron | 20.0% |
| !! | ATTTCTCTTGATAAAATCTA+AGG | + | chr5_2:48337523-48337542 | Msa0773380:intron | 20.0% |
| !! | TTTCTCTTGATAAAATCTAA+GGG | + | chr5_2:48337524-48337543 | Msa0773380:intron | 20.0% |
| !!! | TAGAGATAAGAGTTTTTTTA+TGG | - | chr5_2:48337647-48337666 | None:intergenic | 20.0% |
| !!! | TAGAGATAAGAGTTTTTTTA+TGG | - | chr5_2:48337647-48337666 | None:intergenic | 20.0% |
| !! | GTGTAGAAATTAAACTAAAA+TGG | + | chr5_2:48338026-48338045 | Msa0773380:intron | 20.0% |
| !! | ATTATAAATTCGCAAACAAA+TGG | - | chr5_2:48338070-48338089 | None:intergenic | 20.0% |
| !! | TATTTCGACAATCTAAAAAA+TGG | + | chr5_2:48338098-48338117 | Msa0773380:intron | 20.0% |
| !! | TTTATGTTATGTATATGTGT+AGG | + | chr5_2:48338124-48338143 | Msa0773380:intron | 20.0% |
| !! | TTATGTTATGTATATGTGTA+GGG | + | chr5_2:48338125-48338144 | Msa0773380:intron | 20.0% |
| !! | ATTATAAGGAATTTCACTTT+GGG | - | chr5_2:48338170-48338189 | None:intergenic | 20.0% |
| !! | TATTATAAGGAATTTCACTT+TGG | - | chr5_2:48338171-48338190 | None:intergenic | 20.0% |
| !! | GTGAAATTCCTTATAATAAT+AGG | + | chr5_2:48338173-48338192 | Msa0773380:CDS | 20.0% |
| !! | AAATTCCTTATAATAATAGG+AGG | + | chr5_2:48338176-48338195 | Msa0773380:CDS | 20.0% |
| !! | AATTCCTTATAATAATAGGA+GGG | + | chr5_2:48338177-48338196 | Msa0773380:CDS | 20.0% |
| !!! | ACTGATTATTATTATTTTGG+TGG | + | chr5_2:48338330-48338349 | Msa0773380:intron | 20.0% |
| !! | ATAAATAATATATGCAAGAG+AGG | - | chr5_2:48338359-48338378 | None:intergenic | 20.0% |
| !! | TTCTACATTAACTTTAGATA+TGG | + | chr5_2:48338544-48338563 | Msa0773380:intron | 20.0% |
| !!! | TATAGTTTTTTTACAAGAAG+CGG | + | chr5_2:48338583-48338602 | Msa0773380:intron | 20.0% |
| !!! | ATAAGCACAAATTTCTTTTA+AGG | - | chr5_2:48338749-48338768 | None:intergenic | 20.0% |
| !! | ATCCCTTATAAAATTAAAAC+CGG | - | chr5_2:48338944-48338963 | None:intergenic | 20.0% |
| !! | TGCAAAAAAAATTAAATTCC+GGG | + | chr5_2:48338963-48338982 | Msa0773380:intron | 20.0% |
| !!! | AAATGGCTTATTTTTTTTTG+GGG | - | chr5_2:48338989-48339008 | None:intergenic | 20.0% |
| !! | AATTATAAATCATACTTTGG+TGG | + | chr5_2:48339019-48339038 | Msa0773380:intron | 20.0% |
| !! | ATTATAAATCATACTTTGGT+GGG | + | chr5_2:48339020-48339039 | Msa0773380:intron | 20.0% |
| !! | TCATTAGAAACATATAAACA+GGG | - | chr5_2:48339233-48339252 | None:intergenic | 20.0% |
| !!! | TTGATTAAACAACCATTTTT+GGG | - | chr5_2:48339310-48339329 | None:intergenic | 20.0% |
| !!! | ATTGATTAAACAACCATTTT+TGG | - | chr5_2:48339311-48339330 | None:intergenic | 20.0% |
| !! | TCTTATCATCTGAAAAATAA+AGG | - | chr5_2:48339342-48339361 | None:intergenic | 20.0% |
| !!! | TTCCAAATATATTTTTGAAG+TGG | + | chr5_2:48339509-48339528 | Msa0773380:three_prime_UTR | 20.0% |
| !! | ATCCACTTCAAAAATATATT+TGG | - | chr5_2:48339514-48339533 | None:intergenic | 20.0% |
| ! | AATCCAATTTATAGGATTCA+GGG | - | chr5_2:48336027-48336046 | None:intergenic | 25.0% |
| ! | ATTTAATTGAAGAAGAGAGA+TGG | + | chr5_2:48336145-48336164 | Msa0773380:exon | 25.0% |
| !!! | CATAAATCTTGGTTTTCTTA+CGG | - | chr5_2:48336192-48336211 | None:intergenic | 25.0% |
| ! | TGAAAAAACAGATACATAAG+TGG | + | chr5_2:48336246-48336265 | Msa0773380:CDS | 25.0% |
| ! | TTGAATTAAGAAGCTAATGA+AGG | - | chr5_2:48336601-48336620 | None:intergenic | 25.0% |
| ! | GTGTTTGAATTTGACAAAAT+AGG | + | chr5_2:48336710-48336729 | Msa0773380:intron | 25.0% |
| ! | GTTTGAATTTGACAAAATAG+GGG | + | chr5_2:48336712-48336731 | Msa0773380:intron | 25.0% |
| ! | TTTGAATTTGACAAAATAGG+GGG | + | chr5_2:48336713-48336732 | Msa0773380:intron | 25.0% |
| ! | TAAATTTGAACATGAGACAA+CGG | + | chr5_2:48336957-48336976 | Msa0773380:intron | 25.0% |
| ! | ATGCTAATATATACTTCATC+CGG | + | chr5_2:48337056-48337075 | Msa0773380:intron | 25.0% |
| !! | ATTTTGCTTATAATAGTGAC+CGG | - | chr5_2:48337078-48337097 | None:intergenic | 25.0% |
| !!! | TATTGGCTTACATTAATTTC+AGG | + | chr5_2:48337497-48337516 | Msa0773380:intron | 25.0% |
| !!! | ATAAGAGTTTTTTTATGGAC+TGG | - | chr5_2:48337642-48337661 | None:intergenic | 25.0% |
| !!! | TCAATAATTTTTTTCGAGCT+TGG | + | chr5_2:48337694-48337713 | Msa0773380:intron | 25.0% |
| !!! | ATAAGAGTTTTTTTATGGAC+TGG | - | chr5_2:48337642-48337661 | None:intergenic | 25.0% |
| !!! | GGCTACTCTATTTTTTTTTA+GGG | - | chr5_2:48337795-48337814 | None:intergenic | 25.0% |
| ! | ACATCTTAATATCCTTACTT+AGG | - | chr5_2:48337842-48337861 | None:intergenic | 25.0% |
| ! | AAGTAAGGATATTAAGATGT+TGG | + | chr5_2:48337842-48337861 | Msa0773380:intron | 25.0% |
| !!! | ATAAGATTTCTGAAATTGCT+AGG | + | chr5_2:48337992-48338011 | Msa0773380:intron | 25.0% |
| !!! | TAAGATTTCTGAAATTGCTA+GGG | + | chr5_2:48337993-48338012 | Msa0773380:intron | 25.0% |
| ! | ATTCCTTATAATAATAGGAG+GGG | + | chr5_2:48338178-48338197 | Msa0773380:CDS | 25.0% |
| ! | AAAGCATATTCTTCACAAAT+TGG | + | chr5_2:48338230-48338249 | Msa0773380:CDS | 25.0% |
| !!! | GATTATTATTATTTTGGTGG+TGG | + | chr5_2:48338333-48338352 | Msa0773380:intron | 25.0% |
| ! | TAAAAAAACTATACCTACCT+GGG | - | chr5_2:48338576-48338595 | None:intergenic | 25.0% |
| ! | ATTGTGACATAGATGAAAAA+GGG | - | chr5_2:48338672-48338691 | None:intergenic | 25.0% |
| ! | TATTGTGACATAGATGAAAA+AGG | - | chr5_2:48338673-48338692 | None:intergenic | 25.0% |
| !! | GTTTATCTTGTTTATATGCA+AGG | + | chr5_2:48338896-48338915 | Msa0773380:intron | 25.0% |
| ! | TCCCTTATAAAATTAAAACC+GGG | - | chr5_2:48338943-48338962 | None:intergenic | 25.0% |
| ! | TATGTAAGACACGAAAATAA+TGG | - | chr5_2:48339134-48339153 | None:intergenic | 25.0% |
| ! | CTCATTAGAAACATATAAAC+AGG | - | chr5_2:48339234-48339253 | None:intergenic | 25.0% |
| !! | GTTTATATGTTTCTAATGAG+TGG | + | chr5_2:48339234-48339253 | Msa0773380:intron | 25.0% |
| ! | TTAATCATTTCTCCCAAAAA+TGG | + | chr5_2:48339295-48339314 | Msa0773380:intron | 25.0% |
| ! | ATAGGAATATATAAGATGTG+TGG | - | chr5_2:48339537-48339556 | None:intergenic | 25.0% |
| AAACCCTGAATCCTATAAAT+TGG | + | chr5_2:48336021-48336040 | Msa0773380:five_prime_UTR | 30.0% | |
| GAATCCAATTTATAGGATTC+AGG | - | chr5_2:48336028-48336047 | None:intergenic | 30.0% | |
| !! | ATTGTATTTGTTGTGATGAG+TGG | - | chr5_2:48336088-48336107 | None:intergenic | 30.0% |
| CAAGATTTATGTGTCTTCAT+GGG | + | chr5_2:48336201-48336220 | Msa0773380:CDS | 30.0% | |
| GAAAATTTGAAGGATCATTG+TGG | + | chr5_2:48336645-48336664 | Msa0773380:intron | 30.0% | |
| TTATAAGGATCTGAATCTGA+TGG | + | chr5_2:48336685-48336704 | Msa0773380:intron | 30.0% | |
| ! | GAGAAGGTATGTAAAAAACT+GGG | + | chr5_2:48336768-48336787 | Msa0773380:intron | 30.0% |
| GTTATTTATCATTCCGTCTA+GGG | - | chr5_2:48336872-48336891 | None:intergenic | 30.0% | |
| ! | TGTTATTTATCATTCCGTCT+AGG | - | chr5_2:48336873-48336892 | None:intergenic | 30.0% |
| AGAAAGATTCAAGAATGACA+TGG | + | chr5_2:48337393-48337412 | Msa0773380:intron | 30.0% | |
| AAATCTAAGGGTGATTATTC+TGG | + | chr5_2:48337536-48337555 | Msa0773380:intron | 30.0% | |
| !!! | CGGCTACTCTATTTTTTTTT+AGG | - | chr5_2:48337796-48337815 | None:intergenic | 30.0% |
| AAGGATATTAAGATGTTGGA+AGG | + | chr5_2:48337846-48337865 | Msa0773380:intron | 30.0% | |
| GACGTTTATATGTACATAAG+AGG | + | chr5_2:48337969-48337988 | Msa0773380:intron | 30.0% | |
| ACATTGAAAATTGAAAGGAG+AGG | - | chr5_2:48338288-48338307 | None:intergenic | 30.0% | |
| !!! | TTTAGATATGGTTTTTTCCC+AGG | + | chr5_2:48338556-48338575 | Msa0773380:intron | 30.0% |
| GTAAAAAAACTATACCTACC+TGG | - | chr5_2:48338577-48338596 | None:intergenic | 30.0% | |
| AAGAAATTTGTGCTTATTGC+AGG | + | chr5_2:48338752-48338771 | Msa0773380:intron | 30.0% | |
| !!! | CATGATTTTTTGAAGGAGTA+TGG | + | chr5_2:48338779-48338798 | Msa0773380:CDS | 30.0% |
| !!! | GCCCGGTTTTAATTTTATAA+GGG | + | chr5_2:48338939-48338958 | Msa0773380:intron | 30.0% |
| TCTTTCTATGAAACTCATCA+TGG | - | chr5_2:48339374-48339393 | None:intergenic | 30.0% | |
| GAAAGATGGAATAAGGTTTG+TGG | - | chr5_2:48336063-48336082 | None:intergenic | 35.0% | |
| AGTGGAAGAAAGATGGAATA+AGG | - | chr5_2:48336070-48336089 | None:intergenic | 35.0% | |
| CCATGAAGACACATAAATCT+TGG | - | chr5_2:48336203-48336222 | None:intergenic | 35.0% | |
| CCAAGATTTATGTGTCTTCA+TGG | + | chr5_2:48336200-48336219 | Msa0773380:CDS | 35.0% | |
| !! | AGTTTGTCTAGAACGTTTTG+TGG | - | chr5_2:48336272-48336291 | None:intergenic | 35.0% |
| GATTTGCCATTACAAGGAAA+AGG | - | chr5_2:48336317-48336336 | None:intergenic | 35.0% | |
| ACAGAAGATTTGCCATTACA+AGG | - | chr5_2:48336323-48336342 | None:intergenic | 35.0% | |
| AATGGCAAATCTTCTGTTGA+AGG | + | chr5_2:48336326-48336345 | Msa0773380:CDS | 35.0% | |
| TGAGTGTCTGCAATATATTG+AGG | + | chr5_2:48336522-48336541 | Msa0773380:CDS | 35.0% | |
| GAGGATTACATGATCAAACA+TGG | + | chr5_2:48336541-48336560 | Msa0773380:CDS | 35.0% | |
| AATCCAAGAAGACCATCAAA+CGG | - | chr5_2:48336568-48336587 | None:intergenic | 35.0% | |
| ! | GGAGAAGGTATGTAAAAAAC+TGG | + | chr5_2:48336767-48336786 | Msa0773380:intron | 35.0% |
| TTGCTTATAATAGTGACCTG+AGG | + | chr5_2:48337190-48337209 | Msa0773380:intron | 35.0% | |
| TGCTTATAATAGTGACCTGA+GGG | + | chr5_2:48337191-48337210 | Msa0773380:intron | 35.0% | |
| TACTTAAAACATACTCCCTC+AGG | - | chr5_2:48337209-48337228 | None:intergenic | 35.0% | |
| CAATAAAATCTCAGCCTAAC+CGG | - | chr5_2:48337482-48337501 | None:intergenic | 35.0% | |
| !!! | GTTTTTTTATGGACTGGCAT+CGG | - | chr5_2:48337636-48337655 | None:intergenic | 35.0% |
| TTATGTATATGTGTAGGGTG+TGG | + | chr5_2:48338130-48338149 | Msa0773380:intron | 35.0% | |
| TTGCCCCTCCTATTATTATA+AGG | - | chr5_2:48338184-48338203 | None:intergenic | 35.0% | |
| TACCTAGAAAATGAAGAGAG+TGG | - | chr5_2:48338259-48338278 | None:intergenic | 35.0% | |
| AACACACGACTTTGATAGAT+GGG | - | chr5_2:48338467-48338486 | None:intergenic | 35.0% | |
| CAAAGTCGTGTGTTCAAATT+CGG | + | chr5_2:48338473-48338492 | Msa0773380:intron | 35.0% | |
| !!! | AGGAGAGCATGATTTTTTGA+AGG | + | chr5_2:48338772-48338791 | Msa0773380:intron | 35.0% |
| AGATAATTGTGTTGAACCTG+TGG | + | chr5_2:48338814-48338833 | Msa0773380:CDS | 35.0% | |
| ATTAGTAGCACACCTAATCT+TGG | - | chr5_2:48338869-48338888 | None:intergenic | 35.0% | |
| !! | GGCCTATGAATTTGTTAAGA+CGG | - | chr5_2:48338922-48338941 | None:intergenic | 35.0% |
| TCTTAACAAATTCATAGGCC+CGG | + | chr5_2:48338922-48338941 | Msa0773380:intron | 35.0% | |
| !!! | GGCCCGGTTTTAATTTTATA+AGG | + | chr5_2:48338938-48338957 | Msa0773380:intron | 35.0% |
| !! | TATTTTGGGCCCCAAAAAAT+TGG | + | chr5_2:48339165-48339184 | Msa0773380:intron | 35.0% |
| TAGAAACATATAAACAGGGC+CGG | - | chr5_2:48339229-48339248 | None:intergenic | 35.0% | |
| AGATGGAATAAGGTTTGTGG+AGG | - | chr5_2:48336060-48336079 | None:intergenic | 40.0% | |
| TGTGATGAGTGGAAGAAAGA+TGG | - | chr5_2:48336077-48336096 | None:intergenic | 40.0% | |
| ! | GATGCTCCTTTTCCTTGTAA+TGG | + | chr5_2:48336308-48336327 | Msa0773380:CDS | 40.0% |
| CGAACCACTCATAATAAGGA+GGG | - | chr5_2:48336361-48336380 | None:intergenic | 40.0% | |
| CCTCCTTATTATGAGTGGTT+CGG | + | chr5_2:48336359-48336378 | Msa0773380:CDS | 40.0% | |
| CTCCTTATTATGAGTGGTTC+GGG | + | chr5_2:48336360-48336379 | Msa0773380:CDS | 40.0% | |
| TACCCGAACCACTCATAATA+AGG | - | chr5_2:48336365-48336384 | None:intergenic | 40.0% | |
| !!! | TGTTTTGTTGTTGTCTGTGC+AGG | + | chr5_2:48336474-48336493 | Msa0773380:intron | 40.0% |
| ATCAAACATGGACCGTTTGA+TGG | + | chr5_2:48336553-48336572 | Msa0773380:CDS | 40.0% | |
| AAATAGGGGGCGATATTATC+AGG | + | chr5_2:48336726-48336745 | Msa0773380:intron | 40.0% | |
| AATAGGGGGCGATATTATCA+GGG | + | chr5_2:48336727-48336746 | Msa0773380:intron | 40.0% | |
| ! | CGGTTAGGCTGAGATTTTAT+TGG | + | chr5_2:48337480-48337499 | Msa0773380:intron | 40.0% |
| TATGCTTTCTCTACCACTGA+AGG | - | chr5_2:48338218-48338237 | None:intergenic | 40.0% | |
| ! | TGCCACTCTCTTCATTTTCT+AGG | + | chr5_2:48338254-48338273 | Msa0773380:CDS | 40.0% |
| GAACACACGACTTTGATAGA+TGG | - | chr5_2:48338468-48338487 | None:intergenic | 40.0% | |
| !!! | GATATGGTTTTTTCCCAGGT+AGG | + | chr5_2:48338560-48338579 | Msa0773380:intron | 40.0% |
| AGCGGAACATAAACATGAGT+TGG | + | chr5_2:48338601-48338620 | Msa0773380:intron | 40.0% | |
| GCGGAACATAAACATGAGTT+GGG | + | chr5_2:48338602-48338621 | Msa0773380:intron | 40.0% | |
| TTTGGGTGATGAATTACCAC+AGG | - | chr5_2:48338833-48338852 | None:intergenic | 40.0% | |
| GTGGTAATTCATCACCCAAA+AGG | + | chr5_2:48338833-48338852 | Msa0773380:CDS | 40.0% | |
| ! | TTGGTACAGTGTGTCCTTTT+GGG | - | chr5_2:48338850-48338869 | None:intergenic | 40.0% |
| GGCCGTCTTAACAAATTCAT+AGG | + | chr5_2:48338917-48338936 | Msa0773380:intron | 40.0% | |
| !!! | GCTTATTTTTTTTTGGGGCC+CGG | - | chr5_2:48338984-48339003 | None:intergenic | 40.0% |
| ACCTCACACTCAACAAAAAG+TGG | + | chr5_2:48339050-48339069 | Msa0773380:intron | 40.0% | |
| GATGAGCTAATACGTCTCTT+AGG | + | chr5_2:48339438-48339457 | Msa0773380:exon | 40.0% | |
| TCCAAAGCTAACATGGATTC+AGG | + | chr5_2:48339586-48339605 | Msa0773380:three_prime_UTR | 40.0% | |
| CTTCATGGGTTTCGAACAAG+TGG | + | chr5_2:48336215-48336234 | Msa0773380:CDS | 45.0% | |
| TCGACCCTCCTTATTATGAG+TGG | + | chr5_2:48336354-48336373 | Msa0773380:CDS | 45.0% | |
| CCGAACCACTCATAATAAGG+AGG | - | chr5_2:48336362-48336381 | None:intergenic | 45.0% | |
| TGGTCTTCTTGGATTCTCAC+AGG | + | chr5_2:48336573-48336592 | Msa0773380:CDS | 45.0% | |
| ATAGGGGGCGATATTATCAG+GGG | + | chr5_2:48336728-48336747 | Msa0773380:intron | 45.0% | |
| TCAGCCTAACCGGAAATCAT+GGG | - | chr5_2:48337472-48337491 | None:intergenic | 45.0% | |
| GCAAGCTTGTGACCTAAGTA+AGG | + | chr5_2:48337827-48337846 | Msa0773380:intron | 45.0% | |
| TAATAGGAGGGGCAAAGTTC+AGG | + | chr5_2:48338189-48338208 | Msa0773380:CDS | 45.0% | |
| AATAGGAGGGGCAAAGTTCA+GGG | + | chr5_2:48338190-48338209 | Msa0773380:CDS | 45.0% | |
| GATGGGAGACTAAACTCGAT+GGG | - | chr5_2:48338450-48338469 | None:intergenic | 45.0% | |
| AGATGGGAGACTAAACTCGA+TGG | - | chr5_2:48338451-48338470 | None:intergenic | 45.0% | |
| ! | CTTGGTACAGTGTGTCCTTT+TGG | - | chr5_2:48338851-48338870 | None:intergenic | 45.0% |
| GGACACACTGTACCAAGATT+AGG | + | chr5_2:48338854-48338873 | Msa0773380:CDS | 45.0% | |
| !!! | GCCACTTTTTGTTGAGTGTG+AGG | - | chr5_2:48339054-48339073 | None:intergenic | 45.0% |
| ! | GTCTGTACAGCTTGCTTTAG+TGG | - | chr5_2:48339081-48339100 | None:intergenic | 45.0% |
| TTTGGGCCCCAAAAAATTGG+AGG | + | chr5_2:48339168-48339187 | Msa0773380:intron | 45.0% | |
| TCTGTGGTCCAAAGCTAACA+TGG | + | chr5_2:48339579-48339598 | Msa0773380:three_prime_UTR | 45.0% | |
| ! | GCCTGAATCCATGTTAGCTT+TGG | - | chr5_2:48339590-48339609 | None:intergenic | 45.0% |
| AGCTAACATGGATTCAGGCT+CGG | + | chr5_2:48339591-48339610 | Msa0773380:three_prime_UTR | 45.0% | |
| !! | TCAATTAAATTAAATAAAAT+AGG | - | chr5_2:48336135-48336154 | None:intergenic | 5.0% |
| !!! | TTATTATTTTTTTCATAATT+TGG | + | chr5_2:48336393-48336412 | Msa0773380:intron | 5.0% |
| !!! | TATTATTTTTTTCATAATTT+GGG | + | chr5_2:48336394-48336413 | Msa0773380:intron | 5.0% |
| !!! | CATATAAAAAAAATATATTT+TGG | + | chr5_2:48339150-48339169 | Msa0773380:intron | 5.0% |
| !!! | AATATTATTTTTAAAAGAAT+AGG | - | chr5_2:48339555-48339574 | None:intergenic | 5.0% |
| ! | GGACCGTTTGATGGTCTTCT+TGG | + | chr5_2:48336562-48336581 | Msa0773380:CDS | 50.0% |
| !! | ATATTATCAGGGGCACTGCC+AGG | + | chr5_2:48336738-48336757 | Msa0773380:CDS | 50.0% |
| CATACCTTCTCCTGAAGACC+TGG | - | chr5_2:48336759-48336778 | None:intergenic | 50.0% | |
| CAGCCTAACCGGAAATCATG+GGG | - | chr5_2:48337471-48337490 | None:intergenic | 50.0% | |
| CTCAGCCTAACCGGAAATCA+TGG | - | chr5_2:48337473-48337492 | None:intergenic | 50.0% | |
| CAAGCTTGCGTTACGAAGCT+CGG | - | chr5_2:48337816-48337835 | None:intergenic | 50.0% | |
| ! | AAAGTTCAGGGCACCTTCAG+TGG | + | chr5_2:48338202-48338221 | Msa0773380:CDS | 50.0% |
| ! | TACAGCTTGCTTTAGTGGCG+TGG | - | chr5_2:48339076-48339095 | None:intergenic | 50.0% |
| !!! | ACCGGGCCTCCAATTTTTTG+GGG | - | chr5_2:48339177-48339196 | None:intergenic | 50.0% |
| !!! | CACCGGGCCTCCAATTTTTT+GGG | - | chr5_2:48339178-48339197 | None:intergenic | 50.0% |
| !!! | ACACCGGGCCTCCAATTTTT+TGG | - | chr5_2:48339179-48339198 | None:intergenic | 50.0% |
| ! | TGAGTGGTTCGGGTACAACG+AGG | + | chr5_2:48336370-48336389 | Msa0773380:CDS | 55.0% |
| ACTGCCAGGTCTTCAGGAGA+AGG | + | chr5_2:48336752-48336771 | Msa0773380:CDS | 55.0% | |
| TGCGGAAATCATGGGGTGGT+GGG | - | chr5_2:48337445-48337464 | None:intergenic | 55.0% | |
| TGGGGTGGTGCGGAAATCAT+GGG | - | chr5_2:48337453-48337472 | None:intergenic | 55.0% | |
| ATGGGGTGGTGCGGAAATCA+TGG | - | chr5_2:48337454-48337473 | None:intergenic | 55.0% | |
| CCTAACCGGAAATCATGGGG+TGG | - | chr5_2:48337468-48337487 | None:intergenic | 55.0% | |
| CCACCCCATGATTTCCGGTT+AGG | + | chr5_2:48337465-48337484 | Msa0773380:intron | 55.0% | |
| GCCCCAAAAAATTGGAGGCC+CGG | + | chr5_2:48339173-48339192 | Msa0773380:intron | 55.0% | |
| GTGCGGAAATCATGGGGTGG+TGG | - | chr5_2:48337446-48337465 | None:intergenic | 60.0% | |
| GTGGTGCGGAAATCATGGGG+TGG | - | chr5_2:48337449-48337468 | None:intergenic | 60.0% | |
| GGGGTGGTGCGGAAATCATG+GGG | - | chr5_2:48337452-48337471 | None:intergenic | 60.0% | |
| CCGGAAATCATGGGGTGGTG+CGG | - | chr5_2:48337463-48337482 | None:intergenic | 60.0% | |
| CCGCACCACCCCATGATTTC+CGG | + | chr5_2:48337460-48337479 | Msa0773380:intron | 60.0% | |
| !! | AGGGGCACTGCCAGGTCTTC+AGG | + | chr5_2:48336746-48336765 | Msa0773380:CDS | 65.0% |
| TCGAGGCTGGGCGACGACAC+CGG | - | chr5_2:48339195-48339214 | None:intergenic | 70.0% | |
| GTGTCGTCGCCCAGCCTCGA+CGG | + | chr5_2:48339195-48339214 | Msa0773380:intron | 70.0% | |
| TGTCGTCGCCCAGCCTCGAC+GGG | + | chr5_2:48339196-48339215 | Msa0773380:intron | 70.0% | |
| !! | GCCCAGCCTCGACGGGCTAT+GGG | + | chr5_2:48339203-48339222 | Msa0773380:intron | 70.0% |
| GCCCATAGCCCGTCGAGGCT+GGG | - | chr5_2:48339207-48339226 | None:intergenic | 70.0% | |
| !! | AGCCTCGACGGGCTATGGGC+CGG | + | chr5_2:48339207-48339226 | Msa0773380:intron | 70.0% |
| CGAGGCTGGGCGACGACACC+GGG | - | chr5_2:48339194-48339213 | None:intergenic | 75.0% | |
| !! | CGCCCAGCCTCGACGGGCTA+TGG | + | chr5_2:48339202-48339221 | Msa0773380:intron | 75.0% |
| GGCCCATAGCCCGTCGAGGC+TGG | - | chr5_2:48339208-48339227 | None:intergenic | 75.0% | |
| ! | GGCCGGCCCATAGCCCGTCG+AGG | - | chr5_2:48339212-48339231 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 48335999 | 48339708 | 48335999 | ID=Msa0773380;Name=Msa0773380 |
| chr5_2 | mRNA | 48335999 | 48339708 | 48335999 | ID=Msa0773380-mRNA-1;Parent=Msa0773380;Name=Msa0773380-mRNA-1;_AED=0.10;_eAED=0.10;_QI=165|1|1|1|1|1|6|261|231 |
| chr5_2 | exon | 48335999 | 48336391 | 48335999 | ID=Msa0773380-mRNA-1:exon:14454;Parent=Msa0773380-mRNA-1 |
| chr5_2 | exon | 48336496 | 48336594 | 48336496 | ID=Msa0773380-mRNA-1:exon:14455;Parent=Msa0773380-mRNA-1 |
| chr5_2 | exon | 48336732 | 48336773 | 48336732 | ID=Msa0773380-mRNA-1:exon:14456;Parent=Msa0773380-mRNA-1 |
| chr5_2 | exon | 48338146 | 48338275 | 48338146 | ID=Msa0773380-mRNA-1:exon:14457;Parent=Msa0773380-mRNA-1 |
| chr5_2 | exon | 48338774 | 48338875 | 48338774 | ID=Msa0773380-mRNA-1:exon:14458;Parent=Msa0773380-mRNA-1 |
| chr5_2 | exon | 48339353 | 48339708 | 48339353 | ID=Msa0773380-mRNA-1:exon:14459;Parent=Msa0773380-mRNA-1 |
| chr5_2 | five_prime_UTR | 48335999 | 48336163 | 48335999 | ID=Msa0773380-mRNA-1:five_prime_utr;Parent=Msa0773380-mRNA-1 |
| chr5_2 | CDS | 48336164 | 48336391 | 48336164 | ID=Msa0773380-mRNA-1:cds;Parent=Msa0773380-mRNA-1 |
| chr5_2 | CDS | 48336496 | 48336594 | 48336496 | ID=Msa0773380-mRNA-1:cds;Parent=Msa0773380-mRNA-1 |
| chr5_2 | CDS | 48336732 | 48336773 | 48336732 | ID=Msa0773380-mRNA-1:cds;Parent=Msa0773380-mRNA-1 |
| chr5_2 | CDS | 48338146 | 48338275 | 48338146 | ID=Msa0773380-mRNA-1:cds;Parent=Msa0773380-mRNA-1 |
| chr5_2 | CDS | 48338774 | 48338875 | 48338774 | ID=Msa0773380-mRNA-1:cds;Parent=Msa0773380-mRNA-1 |
| chr5_2 | CDS | 48339353 | 48339447 | 48339353 | ID=Msa0773380-mRNA-1:cds;Parent=Msa0773380-mRNA-1 |
| chr5_2 | three_prime_UTR | 48339448 | 48339708 | 48339448 | ID=Msa0773380-mRNA-1:three_prime_utr;Parent=Msa0773380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
