AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0735330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0735330 MtrunA17_Chr5g0432441 89.076 357 8 1 1 357 1 326 0.0 639
Msa0735330 MtrunA17_Chr3g0106921 65.330 349 89 2 9 357 4 320 2.23e-164 462
Msa0735330 MtrunA17_Chr3g0129051 59.270 356 107 5 3 357 4 322 4.97e-143 408
Msa0735330 MtrunA17_Chr5g0438021 57.803 346 113 3 12 357 13 325 8.55e-139 397
Msa0735330 MtrunA17_Chr3g0129061 58.480 342 108 4 17 357 14 322 4.29e-130 375
Msa0735330 MtrunA17_Chr4g0013171 56.215 354 120 3 5 357 2 321 5.39e-129 372
Msa0735330 MtrunA17_Chr3g0129041 58.187 342 109 4 17 357 14 322 3.99e-126 365
Msa0735330 MtrunA17_Chr4g0013201 53.776 331 118 3 27 357 43 338 2.09e-123 358
Msa0735330 MtrunA17_Chr4g0013191 53.687 339 119 5 22 357 37 340 1.34e-121 354
Msa0735330 MtrunA17_Chr3g0114451 54.000 350 119 5 15 357 4 318 1.63e-121 353
Msa0735330 MtrunA17_Chr4g0013181 57.362 326 104 3 33 357 62 353 2.22e-120 351
Msa0735330 MtrunA17_Chr4g0038161 51.149 348 135 4 12 357 6 320 1.99e-118 345
Msa0735330 MtrunA17_Chr7g0244461 52.601 346 122 4 12 357 9 312 2.37e-118 345
Msa0735330 MtrunA17_Chr2g0320071 52.174 345 128 4 15 357 8 317 4.29e-118 344
Msa0735330 MtrunA17_Chr4g0043391 51.289 349 134 5 12 357 9 324 2.40e-117 342
Msa0735330 MtrunA17_Chr4g0038151 51.282 351 131 6 12 357 6 321 4.59e-117 342
Msa0735330 MtrunA17_Chr4g0038171 51.445 346 132 5 15 357 9 321 2.41e-116 340
Msa0735330 MtrunA17_Chr2g0320101 52.424 330 122 3 28 357 23 317 4.36e-115 337
Msa0735330 MtrunA17_Chr5g0432341 52.000 350 126 8 15 357 7 321 6.49e-115 336
Msa0735330 MtrunA17_Chr5g0432351 51.420 352 129 8 13 357 5 321 1.05e-114 336
Msa0735330 MtrunA17_Chr7g0244451 53.372 341 124 3 17 357 11 316 1.46e-114 335
Msa0735330 MtrunA17_Chr3g0106901 52.450 347 130 3 11 357 12 323 1.46e-113 333
Msa0735330 MtrunA17_Chr5g0432331 49.722 360 142 7 2 357 28 352 2.48e-112 331
Msa0735330 MtrunA17_Chr2g0320091 50.581 344 135 4 15 357 9 318 1.48e-111 328
Msa0735330 MtrunA17_Chr2g0320061 50.712 351 136 5 9 357 3 318 6.95e-111 326
Msa0735330 MtrunA17_Chr7g0224371 50.970 361 134 8 1 357 1 322 1.76e-110 325
Msa0735330 MtrunA17_Chr3g0107881 50.000 350 135 7 13 357 10 324 2.78e-110 325
Msa0735330 MtrunA17_Chr1g0213061 48.611 360 143 6 1 357 1 321 9.26e-110 323
Msa0735330 MtrunA17_Chr2g0320051 51.360 331 125 4 28 357 23 318 4.41e-109 321
Msa0735330 MtrunA17_Chr2g0320031 49.138 348 139 5 13 357 7 319 6.57e-106 313
Msa0735330 MtrunA17_Chr5g0404721 47.917 336 132 5 30 357 30 330 7.35e-99 296
Msa0735330 MtrunA17_Chr5g0402571 45.198 354 152 4 11 357 8 326 1.61e-98 295
Msa0735330 MtrunA17_Chr5g0402581 44.915 354 153 4 11 357 8 326 2.23e-98 294
Msa0735330 MtrunA17_Chr1g0175561 44.722 360 154 6 8 357 2 326 7.61e-98 293
Msa0735330 MtrunA17_Chr8g0372601 47.337 338 135 5 28 357 28 330 1.70e-96 290
Msa0735330 MtrunA17_Chr7g0258811 44.068 354 151 7 15 357 54 371 1.88e-95 288
Msa0735330 MtrunA17_Chr2g0292091 43.296 358 159 6 9 357 3 325 1.51e-94 285
Msa0735330 MtrunA17_Chr2g0292101 43.714 350 153 5 17 357 12 326 1.87e-94 285
Msa0735330 MtrunA17_Chr4g0070951 45.658 357 145 7 13 357 10 329 3.15e-94 284
Msa0735330 MtrunA17_Chr1g0155611 47.478 337 133 5 30 357 46 347 4.00e-94 284
Msa0735330 MtrunA17_Chr2g0299691 46.260 361 142 8 12 357 35 358 1.57e-92 280
Msa0735330 MtrunA17_Chr4g0068621 46.726 336 138 5 28 357 36 336 4.61e-91 276
Msa0735330 MtrunA17_Chr2g0291751 45.428 339 141 5 28 357 27 330 9.95e-91 276
Msa0735330 MtrunA17_Chr2g0292151 44.353 363 158 5 4 357 3 330 1.91e-90 275
Msa0735330 MtrunA17_Chr2g0292181 43.626 353 155 5 14 357 22 339 2.23e-89 273
Msa0735330 MtrunA17_Chr2g0292241 42.778 360 160 6 8 357 7 330 2.64e-88 270
Msa0735330 MtrunA17_Chr2g0292211 42.697 356 157 7 13 357 22 341 2.66e-88 270
Msa0735330 MtrunA17_Chr2g0292251 45.000 340 141 6 28 357 26 329 7.70e-88 268
Msa0735330 MtrunA17_Chr2g0292111 43.288 365 162 7 3 357 1 330 1.72e-87 268
Msa0735330 MtrunA17_Chr2g0292271 42.424 363 158 8 8 357 6 330 6.83e-86 263
Msa0735330 MtrunA17_Chr5g0432401 44.722 360 118 9 1 355 1 284 1.09e-85 260
Msa0735330 MtrunA17_Chr5g0400331 45.161 341 139 5 30 357 26 331 1.26e-85 262
Msa0735330 MtrunA17_Chr5g0421411 44.410 322 128 8 50 357 1 285 1.33e-83 255
Msa0735330 MtrunA17_Chr2g0292291 40.217 368 168 7 4 357 3 332 1.18e-82 255
Msa0735330 MtrunA17_Chr4g0013721 42.398 342 152 6 23 357 93 396 1.33e-82 257
Msa0735330 MtrunA17_Chr4g0013821 41.765 340 147 7 28 357 26 324 1.88e-81 251
Msa0735330 MtrunA17_Chr2g0292261 40.845 355 162 6 14 357 13 330 3.76e-81 251
Msa0735330 MtrunA17_Chr1g0188431 37.602 367 179 7 1 357 1 327 2.09e-76 238
Msa0735330 MtrunA17_Chr2g0322861 39.886 351 165 8 16 357 73 386 4.86e-75 236
Msa0735330 MtrunA17_Chr6g0477071 39.275 331 160 6 28 357 52 342 8.07e-75 234
Msa0735330 MtrunA17_Chr1g0194151 38.082 365 186 5 1 357 1 333 1.41e-73 231
Msa0735330 MtrunA17_Chr4g0024121 36.752 351 178 7 15 357 12 326 1.28e-72 228
Msa0735330 MtrunA17_Chr3g0128061 38.028 355 179 4 10 357 6 326 3.97e-72 227
Msa0735330 MtrunA17_Chr1g0164891 40.240 333 157 6 34 357 93 392 4.43e-72 229
Msa0735330 MtrunA17_Chr7g0225221 39.031 351 172 7 12 357 7 320 9.91e-72 226
Msa0735330 MtrunA17_Chr1g0194271 37.363 364 183 5 8 357 8 340 7.28e-70 222
Msa0735330 MtrunA17_Chr4g0046131 39.947 378 166 10 1 353 1 342 1.70e-69 221
Msa0735330 MtrunA17_Chr1g0204011 36.056 355 179 8 11 357 8 322 3.21e-69 219
Msa0735330 MtrunA17_Chr6g0460711 36.103 349 187 4 10 357 1 314 6.74e-69 219
Msa0735330 MtrunA17_Chr1g0157051 38.506 348 165 8 15 353 7 314 1.09e-68 218
Msa0735330 MtrunA17_Chr3g0114461 57.895 190 75 3 169 357 7 192 1.11e-68 214
Msa0735330 MtrunA17_Chr2g0279041 37.569 362 173 9 9 357 4 325 2.24e-68 218
Msa0735330 MtrunA17_Chr5g0405991 37.069 348 171 7 17 357 10 316 1.08e-66 213
Msa0735330 MtrunA17_Chr6g0467161 39.157 332 158 7 30 357 45 336 3.57e-66 212
Msa0735330 MtrunA17_Chr4g0063671 36.415 357 172 8 13 357 7 320 1.75e-65 210
Msa0735330 MtrunA17_Chr8g0371381 36.471 340 158 8 30 357 26 319 1.63e-64 207
Msa0735330 MtrunA17_Chr4g0076211 36.556 331 159 7 35 357 46 333 1.96e-64 207
Msa0735330 MtrunA17_Chr2g0296621 36.607 336 161 7 30 357 50 341 1.49e-63 206
Msa0735330 MtrunA17_Chr7g0268501 35.674 356 177 8 9 357 10 320 1.86e-63 204
Msa0735330 MtrunA17_Chr7g0268521 35.674 356 177 8 9 357 10 320 1.86e-63 204
Msa0735330 MtrunA17_Chr7g0254201 35.312 337 173 5 26 357 16 312 7.64e-63 203
Msa0735330 MtrunA17_Chr6g0451571 35.493 355 178 10 17 357 17 334 9.91e-60 195
Msa0735330 MtrunA17_Chr7g0254231 34.347 329 176 5 30 357 22 311 5.62e-59 193
Msa0735330 MtrunA17_Chr1g0197411 33.989 356 188 7 15 357 9 330 6.87e-59 193
Msa0735330 MtrunA17_Chr2g0311241 33.777 376 198 9 28 356 58 429 1.69e-58 195
Msa0735330 MtrunA17_Chr2g0278671 36.676 349 165 8 23 357 17 323 4.01e-58 191
Msa0735330 MtrunA17_Chr2g0316791 34.890 364 168 9 28 355 74 404 7.71e-58 192
Msa0735330 MtrunA17_Chr4g0053871 36.676 349 177 9 12 353 9 320 1.03e-57 190
Msa0735330 MtrunA17_Chr2g0316481 35.440 364 166 10 28 355 74 404 2.18e-57 191
Msa0735330 MtrunA17_Chr2g0316191 34.795 365 168 9 28 355 74 405 3.68e-57 191
Msa0735330 MtrunA17_Chr5g0401431 34.551 356 182 9 12 353 7 325 4.29e-57 188
Msa0735330 MtrunA17_Chr8g0364291 35.028 354 186 6 13 357 6 324 5.46e-57 188
Msa0735330 MtrunA17_Chr6g0467251 34.160 363 190 8 1 353 1 324 7.56e-57 188
Msa0735330 MtrunA17_Chr4g0072091 37.537 341 161 10 29 357 23 323 1.74e-56 187
Msa0735330 MtrunA17_Chr2g0316831 34.890 364 168 9 28 355 110 440 1.98e-56 190
Msa0735330 MtrunA17_Chr5g0413051 33.432 338 184 7 29 357 72 377 8.54e-56 186
Msa0735330 MtrunA17_Chr2g0279061 38.644 295 130 7 74 357 12 266 2.71e-55 182
Msa0735330 MtrunA17_Chr6g0467121 35.045 331 171 7 30 357 74 363 3.10e-54 182
Msa0735330 MtrunA17_Chr1g0148021 33.425 362 192 7 9 357 3 328 5.70e-54 180
Msa0735330 MtrunA17_Chr3g0136751 31.933 357 193 6 11 357 6 322 1.78e-53 179
Msa0735330 MtrunA17_Chr4g0074851 32.102 352 202 5 10 357 10 328 4.32e-53 178
Msa0735330 MtrunA17_Chr2g0329641 32.840 338 181 6 29 357 35 335 2.59e-52 176
Msa0735330 MtrunA17_Chr4g0075241 32.239 335 186 5 29 357 28 327 3.64e-52 176
Msa0735330 MtrunA17_Chr2g0311251 32.967 364 174 9 28 355 9 338 4.93e-52 176
Msa0735330 MtrunA17_Chr1g0181481 33.133 332 187 4 28 357 25 323 1.15e-51 174
Msa0735330 MtrunA17_Chr1g0181431 32.132 333 191 4 27 357 24 323 4.21e-51 173
Msa0735330 MtrunA17_Chr1g0181511 32.229 332 190 4 28 357 25 323 3.41e-50 170
Msa0735330 MtrunA17_Chr3g0114491 60.870 115 45 0 29 143 17 131 2.02e-43 147
Msa0735330 MtrunA17_Chr4g0004591 27.635 351 158 6 30 356 77 355 9.86e-40 144
Msa0735330 MtrunA17_Chr2g0292281 35.510 245 104 5 122 357 17 216 2.20e-38 137
Msa0735330 MtrunA17_Chr2g0316141 32.107 299 151 8 76 355 11 276 3.53e-37 135
Msa0735330 MtrunA17_Chr2g0316181 32.107 299 151 8 76 355 11 276 3.53e-37 135
Msa0735330 MtrunA17_Chr2g0316811 38.614 202 89 4 28 227 48 216 3.30e-36 134
Msa0735330 MtrunA17_Chr5g0432321 53.719 121 51 3 182 302 17 132 7.23e-34 122
Msa0735330 MtrunA17_Chr1g0181501 34.392 189 120 3 171 357 3 189 9.74e-29 110
Msa0735330 MtrunA17_Chr5g0432361 53.191 94 41 2 265 356 16 108 4.75e-26 100
Msa0735330 MtrunA17_Chr6g0468731 64.286 70 21 2 69 138 22 87 1.16e-21 88.2
Msa0735330 MtrunA17_Chr3g0104101 37.671 146 72 6 226 357 9 149 1.15e-20 87.4
Msa0735330 MtrunA17_Chr4g0013811 50.000 74 36 1 172 245 6 78 1.59e-17 76.6
Msa0735330 MtrunA17_Chr1g0196191 51.282 78 37 1 68 145 23 99 8.73e-17 76.6
Msa0735330 MtrunA17_Chr1g0181491 37.273 110 67 2 28 137 10 117 9.16e-17 76.6
Msa0735330 MtrunA17_Chr2g0316771 29.050 179 93 5 209 353 4 182 1.28e-13 68.6
Msa0735330 MtrunA17_Chr5g0423911 40.299 67 40 0 287 353 1 67 3.60e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0735330 AT5G58390.1 59.767 343 106 2 15 357 6 316 1.73e-135 389
Msa0735330 AT5G58400.1 57.391 345 113 3 15 357 13 325 2.91e-135 389
Msa0735330 AT5G05340.1 59.394 330 101 3 28 357 28 324 9.55e-135 387
Msa0735330 AT1G14550.1 50.287 348 134 5 15 357 8 321 1.86e-112 330
Msa0735330 AT1G14540.1 46.571 350 150 5 10 357 1 315 2.83e-101 301
Msa0735330 AT4G36430.1 46.610 354 143 7 13 357 14 330 3.27e-100 300
Msa0735330 AT5G06720.1 44.818 357 153 5 10 357 12 333 7.08e-99 296
Msa0735330 AT5G06730.1 42.703 370 163 7 1 357 1 334 7.06e-98 295
Msa0735330 AT5G66390.1 46.041 341 141 5 25 357 28 333 1.97e-97 293
Msa0735330 AT3G50990.1 46.765 340 138 7 26 357 37 341 2.57e-96 290
Msa0735330 AT2G18150.1 46.988 332 133 5 34 357 40 336 3.07e-96 290
Msa0735330 AT1G44970.1 44.094 381 152 7 3 357 1 346 3.63e-96 290
Msa0735330 AT2G18140.1 45.161 341 144 5 25 357 30 335 6.18e-92 278
Msa0735330 AT1G49570.1 45.858 338 140 5 25 353 43 346 4.41e-88 269
Msa0735330 AT4G16270.1 46.108 334 131 7 34 357 54 348 9.55e-88 268
Msa0735330 AT4G08770.1 43.931 346 142 7 26 357 20 327 9.68e-88 268
Msa0735330 AT1G68850.1 40.548 365 161 7 16 357 4 335 9.92e-88 268
Msa0735330 AT5G19890.1 43.575 358 150 7 11 357 11 327 1.90e-87 267
Msa0735330 AT5G19880.1 43.343 353 151 7 17 357 14 329 2.82e-86 264
Msa0735330 AT4G08780.1 43.064 346 145 7 26 357 20 327 4.02e-86 264
Msa0735330 AT2G38390.1 43.109 341 147 7 28 357 29 333 9.61e-86 263
Msa0735330 AT2G35380.1 43.605 344 151 5 25 357 24 335 1.28e-84 260
Msa0735330 AT2G38380.1 42.815 341 148 7 28 357 29 333 7.29e-84 258
Msa0735330 AT3G49110.1 42.308 364 154 8 8 357 15 336 1.17e-83 258
Msa0735330 AT3G32980.1 42.029 345 150 7 26 357 27 334 1.63e-83 258
Msa0735330 AT3G49120.1 42.029 345 150 7 26 357 28 335 6.50e-82 253
Msa0735330 AT2G22420.1 40.299 335 155 5 30 357 23 319 2.41e-75 236
Msa0735330 AT3G01190.1 39.031 351 163 10 17 357 12 321 7.30e-75 234
Msa0735330 AT1G71695.1 40.060 332 159 5 30 357 44 339 3.67e-74 234
Msa0735330 AT3G03670.1 37.110 353 177 6 13 357 6 321 2.55e-73 230
Msa0735330 AT4G33420.1 38.810 353 173 7 8 357 13 325 4.87e-73 230
Msa0735330 AT1G05260.1 39.031 351 166 9 17 357 13 325 1.38e-72 229
Msa0735330 AT4G33420.2 38.810 353 173 7 8 357 60 372 1.49e-72 230
Msa0735330 AT5G51890.1 36.544 353 179 7 12 357 8 322 8.84e-72 226
Msa0735330 AT4G11290.1 36.592 358 179 7 13 357 4 326 2.19e-71 226
Msa0735330 AT5G17820.1 36.648 352 171 7 13 357 7 313 1.57e-69 220
Msa0735330 AT5G17820.2 36.648 352 171 7 13 357 60 366 2.05e-68 219
Msa0735330 AT5G64120.1 36.765 340 167 7 25 357 30 328 2.36e-68 218
Msa0735330 AT5G15180.1 35.772 369 183 11 3 357 1 329 2.28e-67 215
Msa0735330 AT2G41480.1 36.339 366 177 10 8 357 3 328 1.69e-66 213
Msa0735330 AT3G21770.1 37.209 344 170 8 22 356 21 327 3.11e-66 213
Msa0735330 AT5G14130.1 35.833 360 186 6 6 357 8 330 5.19e-66 212
Msa0735330 AT5G14130.2 35.833 360 186 6 6 357 49 371 1.53e-65 212
Msa0735330 AT1G05240.1 35.928 334 166 7 30 353 26 321 7.27e-65 209
Msa0735330 AT1G05250.1 35.928 334 166 7 30 353 26 321 7.27e-65 209
Msa0735330 AT4G26010.2 35.511 352 184 7 5 354 24 334 7.38e-65 209
Msa0735330 AT4G26010.1 36.070 341 175 7 16 354 7 306 7.81e-65 208
Msa0735330 AT5G40150.1 36.095 338 169 7 28 357 30 328 1.04e-64 208
Msa0735330 AT5G42180.1 36.827 353 173 9 10 355 6 315 1.08e-64 208
Msa0735330 AT1G30870.1 38.757 338 154 7 30 357 51 345 2.07e-63 206
Msa0735330 AT3G28200.1 35.312 337 172 7 28 357 19 316 3.16e-63 204
Msa0735330 AT5G47000.1 37.243 341 174 6 22 357 25 330 3.46e-63 205
Msa0735330 AT2G35380.2 42.754 276 116 4 92 357 4 247 2.91e-62 199
Msa0735330 AT5G39580.1 36.441 354 175 9 13 357 7 319 5.93e-61 198
Msa0735330 AT4G17690.1 37.048 332 170 6 30 357 26 322 8.12e-61 198
Msa0735330 AT4G33870.1 31.579 380 186 7 18 356 54 400 1.57e-60 200
Msa0735330 AT4G37530.1 38.261 345 160 9 23 353 20 325 1.79e-60 197
Msa0735330 AT2G24800.1 35.673 342 167 6 28 357 29 329 5.06e-60 196
Msa0735330 AT5G67400.1 37.427 342 165 9 24 353 21 325 1.64e-59 195
Msa0735330 AT5G64110.1 36.740 362 170 9 14 357 10 330 3.04e-59 194
Msa0735330 AT1G34510.1 35.362 345 176 8 17 357 8 309 3.94e-59 193
Msa0735330 AT1G77100.1 35.014 357 186 10 8 357 2 319 4.13e-59 194
Msa0735330 AT2G18980.1 36.261 353 172 9 17 357 12 323 3.49e-58 191
Msa0735330 AT4G37520.1 37.685 337 163 8 28 353 25 325 5.79e-58 191
Msa0735330 AT5G64100.1 35.821 335 162 7 33 357 40 331 6.70e-57 188
Msa0735330 AT4G31760.1 33.333 366 190 8 4 357 3 326 1.02e-56 188
Msa0735330 AT4G37520.2 36.499 337 164 7 28 353 25 322 1.12e-56 187
Msa0735330 AT4G25980.1 34.375 352 176 9 19 357 17 326 1.41e-56 187
Msa0735330 AT3G49960.1 35.694 353 176 10 13 353 12 325 2.41e-56 187
Msa0735330 AT4G30170.1 36.842 342 163 9 28 357 25 325 1.45e-55 185
Msa0735330 AT1G24110.1 33.898 354 188 7 15 357 4 322 8.75e-55 182
Msa0735330 AT2G34060.1 36.391 338 168 9 29 354 41 343 1.91e-54 182
Msa0735330 AT5G22410.1 34.615 364 186 11 1 354 1 322 4.12e-53 179
Msa0735330 AT2G39040.1 34.808 339 178 7 29 357 45 350 2.56e-50 172
Msa0735330 AT4G37530.2 38.591 298 130 9 23 306 20 278 3.41e-50 169
Msa0735330 AT4G21960.1 33.636 330 184 4 30 357 31 327 3.69e-50 171
Msa0735330 AT2G37130.1 31.751 337 184 8 29 357 29 327 7.16e-48 165
Msa0735330 AT2G37130.2 31.832 333 181 8 33 357 2 296 1.57e-47 163
Msa0735330 AT5G24070.1 34.323 303 152 7 64 357 71 335 4.39e-47 163
Msa0735330 AT2G43480.1 30.904 343 188 7 26 357 31 335 2.78e-44 155
Msa0735330 AT3G17070.1 29.429 333 199 3 30 357 38 339 2.07e-42 150
Msa0735330 AT5G39580.2 35.060 251 121 6 13 262 7 216 1.88e-36 132
Msa0735330 AT2G24800.2 35.470 234 110 5 28 260 29 222 7.47e-36 130
Msa0735330 AT4G25980.2 35.784 204 95 4 26 229 67 234 5.92e-35 129
Msa0735330 AT3G17070.2 27.491 291 174 4 72 357 18 276 2.73e-29 114

Find 99 sgRNAs with CRISPR-Local

Find 409 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACTCCACCTTAGACTTTA+TGG 0.119850 5_1:-50517404 None:intergenic
TTATCCAGGTTTCCTTTAAT+TGG 0.201465 5_1:-50522406 None:intergenic
TGCATTCTTCTCTCCTTTAT+TGG 0.219837 5_1:-50517338 None:intergenic
CTAAAGAATACCACCACTTT+TGG 0.231199 5_1:-50522563 None:intergenic
CAAGAATCTCATCAACAAAA+AGG 0.247712 5_1:+50522206 Msa0735330:CDS
TGTTATTAGTGTTTCATAAA+AGG 0.259617 5_1:+50522485 Msa0735330:intron
GTGACAAAAGTGTCACTTTA+AGG 0.279626 5_1:+50522681 Msa0735330:three_prime_UTR
TTGTCTAAGTCTTTAGGATT+AGG 0.293094 5_1:+50515166 None:intergenic
CCAAGTTTAACCTTCCAAAA+AGG 0.308795 5_1:-50521197 None:intergenic
TGTAGTATAAGTTATCAAAA+TGG 0.316765 5_1:-50522185 None:intergenic
AAGGACATGGTGGCCTTATC+TGG 0.324620 5_1:+50521335 Msa0735330:CDS
GGAAATAACAAGCCTCTTAC+CGG 0.340680 5_1:+50522348 Msa0735330:CDS
CCTTATACTACTTAGCAAAA+TGG 0.343968 5_1:+50515266 Msa0735330:exon
AATGCAGGAGAGCCAATTAA+AGG 0.372028 5_1:+50522394 Msa0735330:CDS
CCCTTAGCAACCTTATCAAT+AGG 0.384569 5_1:+50521288 Msa0735330:CDS
TTGAAGGCGTGTTTGATCTT+TGG 0.385330 5_1:+50522444 Msa0735330:three_prime_UTR
CATTATATATAGAGATAATA+TGG 0.387093 5_1:-50515204 None:intergenic
AAGGTTGCTAAGGGTAGAAA+AGG 0.387632 5_1:-50521279 None:intergenic
GATCAAAAGGGGAGATTAGA+AGG 0.387743 5_1:+50522370 Msa0735330:CDS
TGCTACTGCAATGATTAAGA+TGG 0.388563 5_1:+50522326 Msa0735330:CDS
CATTGATGCCATAAAGTCTA+AGG 0.390648 5_1:+50517396 Msa0735330:CDS
TGGAGGATCTACTGATTCAT+TGG 0.391305 5_1:+50522260 Msa0735330:CDS
GAGCTTTAAACCTATTGATA+AGG 0.399870 5_1:-50521298 None:intergenic
GATGACACACCCTCCAATAA+AGG 0.400602 5_1:+50517325 Msa0735330:CDS
ACCTATTGATAAGGTTGCTA+AGG 0.417064 5_1:-50521289 None:intergenic
AAGCCTCTTACCGGATCAAA+AGG 0.417845 5_1:+50522357 Msa0735330:CDS
TTCTTCTCTCCTTTATTGGA+GGG 0.419465 5_1:-50517334 None:intergenic
ACCTCTCAAAGAATCTTTGT+TGG 0.427591 5_1:-50517365 None:intergenic
CCTCTCAAAGAATCTTTGTT+GGG 0.433102 5_1:-50517364 None:intergenic
TTCTTAGGAGCTCACACAAT+TGG 0.437641 5_1:+50522012 Msa0735330:intron
GGAAGGTTAAACTTGGAAGA+AGG 0.441433 5_1:+50521204 Msa0735330:CDS
GTAAATATGATCTCTATAAA+CGG 0.448930 5_1:-50522049 None:intergenic
ATTCTTCTCTCCTTTATTGG+AGG 0.454303 5_1:-50517335 None:intergenic
GAAGGTTAAACTTGGAAGAA+GGG 0.455829 5_1:+50521205 Msa0735330:CDS
AGATCGATATTTCAGATTGA+AGG 0.456168 5_1:+50522428 Msa0735330:three_prime_UTR
AAGTAGTATAAGGCTTTAGA+AGG 0.458660 5_1:-50515256 None:intergenic
TATAAGTTATCAAAATGGTT+TGG 0.466239 5_1:-50522180 None:intergenic
CTGAAATATCGATCTTATCC+AGG 0.466675 5_1:-50522420 None:intergenic
ATCAATAGGTTTAAAGCTCA+AGG 0.476560 5_1:+50521302 Msa0735330:CDS
ACAATTCCTCTGCCTTGACT+TGG 0.477817 5_1:-50522100 None:intergenic
ACTGTTTGCATCATTGAGGC+TGG 0.487052 5_1:-50521240 None:intergenic
GCTACTGCAATGATTAAGAT+GGG 0.493974 5_1:+50522327 Msa0735330:CDS
CACAACCTTCTGAGGGGAAG+TGG 0.497457 5_1:-50517998 None:intergenic
GGGAGATTAGAAGGCAATGC+AGG 0.503265 5_1:+50522379 Msa0735330:CDS
CCCAACAAAGATTCTTTGAG+AGG 0.507682 5_1:+50517364 Msa0735330:CDS
TAGTATAAGGCTTTAGAAGG+TGG 0.512062 5_1:-50515253 None:intergenic
CCAACACACGTTGGCTCAGT+TGG 0.512756 5_1:+50517964 Msa0735330:CDS
AGCCTCTTACCGGATCAAAA+GGG 0.519613 5_1:+50522358 Msa0735330:CDS
TATTGATAACAGGGCTGTGA+TGG 0.525762 5_1:+50517289 Msa0735330:intron
ATCGAACACACAACCTTCTG+AGG 0.526634 5_1:-50518006 None:intergenic
ACACGTTGGCTCAGTTGGTA+AGG 0.528013 5_1:+50517969 Msa0735330:CDS
CACCACTGTTTGCATCATTG+AGG 0.529112 5_1:-50521244 None:intergenic
CAAAGCAGTCATGAAAATGA+AGG 0.532001 5_1:-50515482 None:intergenic
CACCGTCCTCACATCGGCAG+CGG 0.536392 5_1:-50518031 None:intergenic
ACCGTCCTCACATCGGCAGC+GGG 0.536523 5_1:-50518030 None:intergenic
AGCTCAAGGACTCTCTACTA+AGG 0.542515 5_1:+50521316 Msa0735330:CDS
CCTATTGATAAGGTTGCTAA+GGG 0.554792 5_1:-50521288 None:intergenic
AACAGAATCACGAGCAGCAA+TGG 0.556484 5_1:-50517464 None:intergenic
TCAGCACAAGAGACCACACC+GGG 0.558299 5_1:-50517433 None:intergenic
AAAGCTCTTGATCAGAATGA+AGG 0.559330 5_1:-50522233 None:intergenic
AGAGCCAATTAAAGGAAACC+TGG 0.563025 5_1:+50522402 Msa0735330:exon
ATAGTTTATTTGCCAAGTCA+AGG 0.563167 5_1:+50522088 Msa0735330:CDS
ATAAGGCTTTAGAAGGTGGA+TGG 0.563249 5_1:-50515249 None:intergenic
AGGAATTGTCCAAGGAAAAG+TGG 0.565194 5_1:+50522114 Msa0735330:CDS
TCCCGCTGCCGATGTGAGGA+CGG 0.565951 5_1:+50518029 Msa0735330:CDS
AGGTTGCTAAGGGTAGAAAA+GGG 0.568432 5_1:-50521278 None:intergenic
CGATTCCCGCTGCCGATGTG+AGG 0.569882 5_1:+50518025 Msa0735330:CDS
CCAACTGAGCCAACGTGTGT+TGG 0.570784 5_1:-50517964 None:intergenic
CTAAGGGTAGAAAAGGGAGG+TGG 0.578099 5_1:-50521272 None:intergenic
ACATACCACTTCCCCTCAGA+AGG 0.584922 5_1:+50517993 Msa0735330:CDS
TATTTGCCAAGTCAAGGCAG+AGG 0.591700 5_1:+50522094 Msa0735330:CDS
AAGTACATATACCCCAAAAG+TGG 0.598310 5_1:+50522550 Msa0735330:three_prime_UTR
GCTAGAGAACCTCGCATGGG+AGG 0.612577 5_1:+50515447 Msa0735330:CDS
TAAGTCTTTAGGATTAGGTG+AGG 0.616809 5_1:+50515171 None:intergenic
CAAGGCAGAGGAATTGTCCA+AGG 0.617740 5_1:+50522106 Msa0735330:CDS
TTGCTAAGGGTAGAAAAGGG+AGG 0.621073 5_1:-50521275 None:intergenic
TGTTGCTAGAGAACCTCGCA+TGG 0.621286 5_1:+50515443 Msa0735330:CDS
TCGAACACACAACCTTCTGA+GGG 0.621422 5_1:-50518005 None:intergenic
GCCTCTTACCGGATCAAAAG+GGG 0.621930 5_1:+50522359 Msa0735330:CDS
TGATGCCATAAAGTCTAAGG+TGG 0.622773 5_1:+50517399 Msa0735330:CDS
AGGAGCTCACACAATTGGAA+AGG 0.625854 5_1:+50522017 Msa0735330:intron
TACATATACCCCAAAAGTGG+TGG 0.626379 5_1:+50522553 Msa0735330:three_prime_UTR
TGCCGATGTGAGGACGGTGT+TGG 0.634775 5_1:+50518035 Msa0735330:CDS
CTCACACAATTGGAAAGGCA+AGG 0.636642 5_1:+50522022 Msa0735330:CDS
AAGGTGGAGTCAGTATGCCC+CGG 0.647987 5_1:+50517415 Msa0735330:CDS
CACCAACACCGTCCTCACAT+CGG 0.654517 5_1:-50518037 None:intergenic
AGAAGAGATCCTCCCATGCG+AGG 0.655274 5_1:-50515456 None:intergenic
GTTGCTAGAGAACCTCGCAT+GGG 0.656226 5_1:+50515444 Msa0735330:CDS
AAGTCTTTAGGATTAGGTGA+GGG 0.660885 5_1:+50515172 None:intergenic
GGAGTCAGTATGCCCCGGTG+TGG 0.661070 5_1:+50517420 Msa0735330:CDS
AGGACTCTCTACTAAGGACA+TGG 0.666154 5_1:+50521322 Msa0735330:CDS
ATCAGCACAAGAGACCACAC+CGG 0.684464 5_1:-50517434 None:intergenic
AGCCTCAATGATGCAAACAG+TGG 0.715380 5_1:+50521242 Msa0735330:CDS
AGCAACAGCAGAGTGAACAA+CGG 0.720096 5_1:-50515427 None:intergenic
ATTTAAATTGCAAAGCAGTG+TGG 0.721064 5_1:+50522659 Msa0735330:three_prime_UTR
ACTCTCTACTAAGGACATGG+TGG 0.722310 5_1:+50521325 Msa0735330:CDS
CATACATAGCCAACACACGT+TGG 0.733759 5_1:+50517955 Msa0735330:intron
CGAACACACAACCTTCTGAG+GGG 0.750633 5_1:-50518004 None:intergenic
CAGCACAAGAGACCACACCG+GGG 0.839989 5_1:-50517432 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATTGAATATATTATTTTT+TGG + chr5_1:50516011-50516030 Msa0735330:intron 10.0%
!! AATTTATTAGATAAAGATTA+AGG - chr5_1:50516461-50516480 None:intergenic 10.0%
!! TAATCTTTATCTAATAAATT+TGG + chr5_1:50516461-50516480 Msa0735330:intron 10.0%
!!! AATTAATTTTTTTTAAATGG+TGG - chr5_1:50518520-50518539 None:intergenic 10.0%
!!! TCACATATTTTATTTTATTT+TGG + chr5_1:50518660-50518679 Msa0735330:intron 10.0%
!!! CACATATTTTATTTTATTTT+GGG + chr5_1:50518661-50518680 Msa0735330:intron 10.0%
!! ATTAGAAAAAAAAAATATTG+AGG + chr5_1:50518831-50518850 Msa0735330:intron 10.0%
!! TTAGAAAAAAAAAATATTGA+GGG + chr5_1:50518832-50518851 Msa0735330:intron 10.0%
!!! AATCTTTTTCATTTTTATAA+AGG + chr5_1:50519527-50519546 Msa0735330:intron 10.0%
!!! GATAGTTTTTTTTTTTTTTA+AGG - chr5_1:50519997-50520016 None:intergenic 10.0%
!!! AATCTTTTTCATTTTTATAA+AGG + chr5_1:50519527-50519546 Msa0735330:intron 10.0%
!! CATTATATATAGAGATAATA+TGG - chr5_1:50515207-50515226 None:intergenic 15.0%
!!! TGATCTATAATTTGTAAAAT+GGG + chr5_1:50517607-50517626 Msa0735330:intron 15.0%
!!! TTTTATTGAAGAGATTTTAA+TGG + chr5_1:50517856-50517875 Msa0735330:intron 15.0%
!!! TTTTTGGTAATAAAAAGTTT+AGG - chr5_1:50518144-50518163 None:intergenic 15.0%
!!! ATGTGGTTTTTTTTTTTTTT+TGG - chr5_1:50518160-50518179 None:intergenic 15.0%
!! ATTAATTCATAAATATGTGT+TGG - chr5_1:50518248-50518267 None:intergenic 15.0%
!!! GTATAAAATTTACTTTTCAA+GGG - chr5_1:50518382-50518401 None:intergenic 15.0%
!!! AGTATAAAATTTACTTTTCA+AGG - chr5_1:50518383-50518402 None:intergenic 15.0%
!! AGTGCATATTTAATTATTAA+GGG - chr5_1:50518442-50518461 None:intergenic 15.0%
!! TAGTGCATATTTAATTATTA+AGG - chr5_1:50518443-50518462 None:intergenic 15.0%
!!! CTGTTTCATATTTTATAATA+GGG + chr5_1:50518684-50518703 Msa0735330:intron 15.0%
!! ATAATAAAAAAACGAAAAGA+CGG + chr5_1:50519283-50519302 Msa0735330:intron 15.0%
!! AAATAAATCAAATTATTACG+TGG + chr5_1:50519368-50519387 Msa0735330:intron 15.0%
!!! TTTTGTTTCTTTTGTTTTTA+GGG - chr5_1:50519427-50519446 None:intergenic 15.0%
!!! TTTTTGTTTCTTTTGTTTTT+AGG - chr5_1:50519428-50519447 None:intergenic 15.0%
!! GTAATAAAAAAAAGAAAAGA+CGG + chr5_1:50519818-50519837 Msa0735330:intron 15.0%
!! AAATAAATCAAATTATTACG+TGG + chr5_1:50519368-50519387 Msa0735330:intron 15.0%
!!! TTTTGTTTCTTTTGTTTTTA+GGG - chr5_1:50519427-50519446 None:intergenic 15.0%
!!! TTTTTGTTTCTTTTGTTTTT+AGG - chr5_1:50519428-50519447 None:intergenic 15.0%
!! TATTTCAATAAAAATGTTAG+TGG - chr5_1:50520479-50520498 None:intergenic 15.0%
!! TATTAGAAGAAAAGAAATTA+GGG - chr5_1:50521102-50521121 None:intergenic 15.0%
!! TTATTAGAAGAAAAGAAATT+AGG - chr5_1:50521103-50521122 None:intergenic 15.0%
!! TAATAATAAAAGTAAGAAGA+AGG - chr5_1:50521400-50521419 None:intergenic 15.0%
!!! AATAATTTCATGTATTTTCT+TGG - chr5_1:50521593-50521612 None:intergenic 15.0%
!! AAGAAAATACATGAAATTAT+TGG + chr5_1:50521592-50521611 Msa0735330:intron 15.0%
!! TGTTGAAAATGAAATTTAAA+CGG - chr5_1:50521663-50521682 None:intergenic 15.0%
!!! TTCATGTTTTTTCTTATAGA+TGG + chr5_1:50515336-50515355 Msa0735330:CDS 20.0%
!! GTGGATATATAATATAGAAA+TGG - chr5_1:50515730-50515749 None:intergenic 20.0%
!!! ATTTCTTCCTCAATAAATTT+TGG + chr5_1:50515851-50515870 Msa0735330:intron 20.0%
!!! TGAAAGTTTTTTAGTAGTAA+TGG + chr5_1:50516513-50516532 Msa0735330:intron 20.0%
!!! ACAACAATACTTTTTTTTAG+AGG + chr5_1:50516539-50516558 Msa0735330:intron 20.0%
!!! CAACAATACTTTTTTTTAGA+GGG + chr5_1:50516540-50516559 Msa0735330:intron 20.0%
!!! AACAATACTTTTTTTTAGAG+GGG + chr5_1:50516541-50516560 Msa0735330:intron 20.0%
!!! AAAAGATTAATTTGTACGTA+CGG - chr5_1:50516574-50516593 None:intergenic 20.0%
!! TGAATCATATGATTTAAATG+TGG + chr5_1:50516879-50516898 Msa0735330:intron 20.0%
!!! AGTATGTTTATGAAGTTTTA+GGG - chr5_1:50516970-50516989 None:intergenic 20.0%
!!! TTAAGTTTAAAATTGTGCAT+TGG - chr5_1:50517038-50517057 None:intergenic 20.0%
!! ATAGTGCAAATATTCTAAAT+AGG + chr5_1:50517200-50517219 Msa0735330:intron 20.0%
!!! CTGATCTATAATTTGTAAAA+TGG + chr5_1:50517606-50517625 Msa0735330:intron 20.0%
!! AATATAATGTTTACAAGTCT+TGG + chr5_1:50517689-50517708 Msa0735330:intron 20.0%
!!! TGTATATTTTAACATAAGAG+GGG - chr5_1:50518353-50518372 None:intergenic 20.0%
!!! GTGTATATTTTAACATAAGA+GGG - chr5_1:50518354-50518373 None:intergenic 20.0%
!! GTAATTTAAGCATCATATAA+GGG - chr5_1:50518411-50518430 None:intergenic 20.0%
!! TGTAATTTAAGCATCATATA+AGG - chr5_1:50518412-50518431 None:intergenic 20.0%
!! ATATTTAATTATTAAGGGAG+GGG - chr5_1:50518437-50518456 None:intergenic 20.0%
!! CATATTTAATTATTAAGGGA+GGG - chr5_1:50518438-50518457 None:intergenic 20.0%
!! TTACTAAATACAATAAAGCA+TGG - chr5_1:50518636-50518655 None:intergenic 20.0%
!!! GCTGTTTCATATTTTATAAT+AGG + chr5_1:50518683-50518702 Msa0735330:intron 20.0%
!! TTTCGAAAAAAATAGTATTG+CGG - chr5_1:50518781-50518800 None:intergenic 20.0%
!!! TCTAATATGTTTTGAAAAAG+AGG + chr5_1:50518933-50518952 Msa0735330:intron 20.0%
!!! CTAATATGTTTTGAAAAAGA+GGG + chr5_1:50518934-50518953 Msa0735330:intron 20.0%
!!! TAATATGTTTTGAAAAAGAG+GGG + chr5_1:50518935-50518954 Msa0735330:intron 20.0%
!! AGTGTATATTTAAACATAAG+AGG + chr5_1:50518963-50518982 Msa0735330:intron 20.0%
!! GTGTATATTTAAACATAAGA+GGG + chr5_1:50518964-50518983 Msa0735330:intron 20.0%
!! TGTATATTTAAACATAAGAG+GGG + chr5_1:50518965-50518984 Msa0735330:intron 20.0%
!! GTAACAAACAAAATTGTTTA+AGG - chr5_1:50519174-50519193 None:intergenic 20.0%
!!! ATGTGATAGTTTTATTTTCA+CGG - chr5_1:50519400-50519419 None:intergenic 20.0%
!! AAAAATGAAAAAGATTCGTT+AGG - chr5_1:50519523-50519542 None:intergenic 20.0%
!! GTAACAAACAAAATTGTTTA+AGG - chr5_1:50519174-50519193 None:intergenic 20.0%
!!! ATGTGATAGTTTTATTTTCA+CGG - chr5_1:50519400-50519419 None:intergenic 20.0%
!! AAAAATGAAAAAGATTCGTT+AGG - chr5_1:50519523-50519542 None:intergenic 20.0%
!!! CAATTAAAAATTGTTTTGCA+AGG + chr5_1:50520317-50520336 Msa0735330:intron 20.0%
!!! TTGTTAAAAATTGTTTTGCA+AGG + chr5_1:50520405-50520424 Msa0735330:intron 20.0%
!!! AAATATAGTTGCTTCTAAAA+TGG + chr5_1:50520494-50520513 Msa0735330:intron 20.0%
!! AAATGGATATGTAATCTTAA+AGG + chr5_1:50520511-50520530 Msa0735330:intron 20.0%
!!! TTTTTTTTGAAGAAAGAAGT+TGG + chr5_1:50520923-50520942 Msa0735330:intron 20.0%
!!! AAGTTTTAATTAGACACAAT+AGG - chr5_1:50521374-50521393 None:intergenic 20.0%
!!! TTACTATTTCATTTTAACTG+TGG - chr5_1:50521638-50521657 None:intergenic 20.0%
!!! ATTTTCTCTTTAATATCGAA+GGG - chr5_1:50521832-50521851 None:intergenic 20.0%
!! TTCGATATTAAAGAGAAAAT+GGG + chr5_1:50521832-50521851 Msa0735330:intron 20.0%
!! GTAAATATGATCTCTATAAA+CGG - chr5_1:50522052-50522071 None:intergenic 20.0%
!! TATAAGTTATCAAAATGGTT+TGG - chr5_1:50522183-50522202 None:intergenic 20.0%
!! TGTAGTATAAGTTATCAAAA+TGG - chr5_1:50522188-50522207 None:intergenic 20.0%
!! TGTTATTAGTGTTTCATAAA+AGG + chr5_1:50522485-50522504 Msa0735330:intron 20.0%
! TTTACAGCCTTAAAAACATT+GGG - chr5_1:50515405-50515424 None:intergenic 25.0%
! ATTTACAGCCTTAAAAACAT+TGG - chr5_1:50515406-50515425 None:intergenic 25.0%
! TTAGTATTTGATCATTGCAA+TGG - chr5_1:50515575-50515594 None:intergenic 25.0%
! CATCATCATTAAATTTGTGA+CGG - chr5_1:50515649-50515668 None:intergenic 25.0%
! GAAATCTTCATATGAACTAT+TGG - chr5_1:50515958-50515977 None:intergenic 25.0%
! TCTTATTGAGTGAATTGAAT+AGG + chr5_1:50516067-50516086 Msa0735330:intron 25.0%
! CTTATTGAGTGAATTGAATA+GGG + chr5_1:50516068-50516087 Msa0735330:intron 25.0%
! TTAAACATCAAGCTTCAAAA+AGG - chr5_1:50516665-50516684 None:intergenic 25.0%
!! GAGTATGTTTATGAAGTTTT+AGG - chr5_1:50516971-50516990 None:intergenic 25.0%
! TCTAAATAGGTCAAGTAATA+TGG + chr5_1:50517213-50517232 Msa0735330:intron 25.0%
! CTAAATAGGTCAAGTAATAT+GGG + chr5_1:50517214-50517233 Msa0735330:intron 25.0%
!!! ACTTTTTGCTTATTGATAAC+AGG + chr5_1:50517279-50517298 Msa0735330:intron 25.0%
!!! CTTTTTGCTTATTGATAACA+GGG + chr5_1:50517280-50517299 Msa0735330:intron 25.0%
!! AGTTTTTGCTGATAATTTTC+TGG - chr5_1:50517717-50517736 None:intergenic 25.0%
!! AATATGTGCATATAACTTGT+TGG - chr5_1:50517829-50517848 None:intergenic 25.0%
!! ATAAAAAGTTTAGGTGGATT+CGG - chr5_1:50518135-50518154 None:intergenic 25.0%
!! TTGGTAATAAAAAGTTTAGG+TGG - chr5_1:50518141-50518160 None:intergenic 25.0%
! TTAAAAAAGTCACTTAGAGT+TGG - chr5_1:50518216-50518235 None:intergenic 25.0%
!!! GGTGTATATTTTAACATAAG+AGG - chr5_1:50518355-50518374 None:intergenic 25.0%
!!! AAAATTTACTTTTCAAGGGA+GGG - chr5_1:50518378-50518397 None:intergenic 25.0%
!!! TAAAATTTACTTTTCAAGGG+AGG - chr5_1:50518379-50518398 None:intergenic 25.0%
! GCATATTTAATTATTAAGGG+AGG - chr5_1:50518439-50518458 None:intergenic 25.0%
! TTCGAAAAAAATAGTATTGC+GGG - chr5_1:50518780-50518799 None:intergenic 25.0%
!!! AGTGTAGATTTTAACATAAG+AGG + chr5_1:50518860-50518879 Msa0735330:intron 25.0%
!!! GTGTAGATTTTAACATAAGA+GGG + chr5_1:50518861-50518880 Msa0735330:intron 25.0%
! ATGTAATTCAATCTTCTCTT+AGG + chr5_1:50518891-50518910 Msa0735330:intron 25.0%
! TGTAATTCAATCTTCTCTTA+GGG + chr5_1:50518892-50518911 Msa0735330:intron 25.0%
! TAGTTTGAATAACAAAAGTC+AGG - chr5_1:50519149-50519168 None:intergenic 25.0%
!!! TGTGATAGTTTTATTTTCAC+GGG - chr5_1:50519399-50519418 None:intergenic 25.0%
!!! TGTGATAGTTTTATTTTCAC+GGG - chr5_1:50519399-50519418 None:intergenic 25.0%
!! TATTTAAAACCGCCAAAAAA+GGG - chr5_1:50520276-50520295 None:intergenic 25.0%
!! ATATTTAAAACCGCCAAAAA+AGG - chr5_1:50520277-50520296 None:intergenic 25.0%
!! TATTTAAAACCGCCAAAAAA+GGG - chr5_1:50520276-50520295 None:intergenic 25.0%
!! ATATTTAAAACCGCCAAAAA+AGG - chr5_1:50520277-50520296 None:intergenic 25.0%
! ACAATAAAAATGAGTGTTAG+TGG - chr5_1:50520550-50520569 None:intergenic 25.0%
! CTTGATATATATCACACATT+TGG + chr5_1:50521446-50521465 Msa0735330:intron 25.0%
! CTTAGAACAAAACGAAAATT+AGG - chr5_1:50521519-50521538 None:intergenic 25.0%
!! ATTTCATGTATTTTCTTGGT+TGG - chr5_1:50521589-50521608 None:intergenic 25.0%
!! AATGCTATGTAAGTTGAATT+TGG - chr5_1:50521789-50521808 None:intergenic 25.0%
!! CATTTTCTCTTTAATATCGA+AGG - chr5_1:50521833-50521852 None:intergenic 25.0%
! CTTCGATATTAAAGAGAAAA+TGG + chr5_1:50521831-50521850 Msa0735330:intron 25.0%
!! CTGAAGTGATTAATGAATTT+TGG - chr5_1:50521969-50521988 None:intergenic 25.0%
! TTTAATTCTTTGTGCTTCTT+AGG + chr5_1:50521997-50522016 Msa0735330:intron 25.0%
! AAGAATCTCATCAACAAAAA+GGG + chr5_1:50522207-50522226 Msa0735330:CDS 25.0%
!! AAGTAGTATAAGGCTTTAGA+AGG - chr5_1:50515259-50515278 None:intergenic 30.0%
! CCATTTTGCTAAGTAGTATA+AGG - chr5_1:50515269-50515288 None:intergenic 30.0%
CCTTATACTACTTAGCAAAA+TGG + chr5_1:50515266-50515285 Msa0735330:exon 30.0%
!!! TTTCTCACTAGTTTTCTAAG+TGG - chr5_1:50515752-50515771 None:intergenic 30.0%
ATTAGCGCCAAAATTTATTG+AGG - chr5_1:50515861-50515880 None:intergenic 30.0%
!! TCTTTCAAAGAGTCTTATTG+AGG + chr5_1:50516158-50516177 Msa0735330:intron 30.0%
!! CTTTCAAAGAGTCTTATTGA+GGG + chr5_1:50516159-50516178 Msa0735330:intron 30.0%
TATATTCACCAACCTATGTT+GGG - chr5_1:50516300-50516319 None:intergenic 30.0%
ATATATTCACCAACCTATGT+TGG - chr5_1:50516301-50516320 None:intergenic 30.0%
ACAACATGGGAAAATTACAA+GGG - chr5_1:50516412-50516431 None:intergenic 30.0%
GAGTATTTAACTCACAACAT+GGG - chr5_1:50516425-50516444 None:intergenic 30.0%
TGAGTATTTAACTCACAACA+TGG - chr5_1:50516426-50516445 None:intergenic 30.0%
TGCATTGTGAATAAAGCAAA+AGG + chr5_1:50516624-50516643 Msa0735330:intron 30.0%
!!! AAGCTTCAAAAAGGCATTTT+TGG - chr5_1:50516656-50516675 None:intergenic 30.0%
AAAATCAGACATGCTAAATG+TGG - chr5_1:50516825-50516844 None:intergenic 30.0%
!! AGCATGTCTGATTTTTGTTT+TGG + chr5_1:50516830-50516849 Msa0735330:intron 30.0%
AGAAAAATAGAGTCAAAGCA+TGG + chr5_1:50517170-50517189 Msa0735330:intron 30.0%
GTTGGAACAAAACGAAAATT+AGG - chr5_1:50518198-50518217 None:intergenic 30.0%
TGTAATTCAAGCATCTTTGA+GGG - chr5_1:50518995-50519014 None:intergenic 30.0%
!! AAATTTACTTTTCAAGGGAG+GGG - chr5_1:50518377-50518396 None:intergenic 30.0%
TTTAAGCATCATATAAGGGA+GGG - chr5_1:50518407-50518426 None:intergenic 30.0%
ATTTAAGCATCATATAAGGG+AGG - chr5_1:50518408-50518427 None:intergenic 30.0%
!! AGATTTTAACATAAGAGGGT+AGG + chr5_1:50518865-50518884 Msa0735330:intron 30.0%
!! GATTTTAACATAAGAGGGTA+GGG + chr5_1:50518866-50518885 Msa0735330:intron 30.0%
!! ATTTTAACATAAGAGGGTAG+GGG + chr5_1:50518867-50518886 Msa0735330:intron 30.0%
GTAATTCAATCTTCTCTTAG+GGG + chr5_1:50518893-50518912 Msa0735330:intron 30.0%
ATATTTAAACATAAGAGGGG+AGG + chr5_1:50518968-50518987 Msa0735330:intron 30.0%
TGTAATTCAAGCATCTTTGA+AGG + chr5_1:50518995-50519014 Msa0735330:intron 30.0%
GTAATTCAAGCATCTTTGAA+GGG + chr5_1:50518996-50519015 Msa0735330:intron 30.0%
AAAATGGGGGGAAAATATTA+GGG - chr5_1:50519086-50519105 None:intergenic 30.0%
AAAAATGGGGGGAAAATATT+AGG - chr5_1:50519087-50519106 None:intergenic 30.0%
ATTTACATTATGTCAACGTG+TGG - chr5_1:50519329-50519348 None:intergenic 30.0%
!!! TGTTTCTTTTGTTTTTAGGG+AGG - chr5_1:50519424-50519443 None:intergenic 30.0%
AAAATGGGGGGAAAATATTA+GGG - chr5_1:50519086-50519105 None:intergenic 30.0%
AAAAATGGGGGGAAAATATT+AGG - chr5_1:50519087-50519106 None:intergenic 30.0%
ATTTACATTATGTCAACGTG+TGG - chr5_1:50519329-50519348 None:intergenic 30.0%
!!! TGTTTCTTTTGTTTTTAGGG+AGG - chr5_1:50519424-50519443 None:intergenic 30.0%
ATATTTAAACCCGCCAAAAA+GGG - chr5_1:50520190-50520209 None:intergenic 30.0%
TATATTTAAACCCGCCAAAA+AGG - chr5_1:50520191-50520210 None:intergenic 30.0%
! TAGGGTTAATTAAGGTTGAT+TGG - chr5_1:50520161-50520180 None:intergenic 30.0%
TAAAAATGTTAGTGGTCTAG+TGG - chr5_1:50520471-50520490 None:intergenic 30.0%
TGCATCAACAAAAATGAACA+TGG - chr5_1:50520625-50520644 None:intergenic 30.0%
TTCGAAGAATCTATTTCGTT+TGG + chr5_1:50520832-50520851 Msa0735330:intron 30.0%
TGGTGAAAAAAAAGAGAAGT+TGG + chr5_1:50520893-50520912 Msa0735330:intron 30.0%
! TTCTATCATATTTTGCAGCT+TGG + chr5_1:50521170-50521189 Msa0735330:intron 30.0%
!! GAGCTTTAAACCTATTGATA+AGG - chr5_1:50521301-50521320 None:intergenic 30.0%
! ATCAATAGGTTTAAAGCTCA+AGG + chr5_1:50521302-50521321 Msa0735330:CDS 30.0%
AAAAAGACATGTACCAGATA+AGG - chr5_1:50521351-50521370 None:intergenic 30.0%
! GGTTGGATAAACATGTTTTT+CGG - chr5_1:50521572-50521591 None:intergenic 30.0%
TTTAGATTATCAAACCACCA+GGG - chr5_1:50521859-50521878 None:intergenic 30.0%
ATAGTTTATTTGCCAAGTCA+AGG + chr5_1:50522088-50522107 Msa0735330:CDS 30.0%
!! TTTATTGTACCACTTTTCCT+TGG - chr5_1:50522126-50522145 None:intergenic 30.0%
CAAGAATCTCATCAACAAAA+AGG + chr5_1:50522206-50522225 Msa0735330:CDS 30.0%
TTATCCAGGTTTCCTTTAAT+TGG - chr5_1:50522409-50522428 None:intergenic 30.0%
AGATCGATATTTCAGATTGA+AGG + chr5_1:50522428-50522447 Msa0735330:three_prime_UTR 30.0%
!! TAAAGAATACCACCACTTTT+GGG - chr5_1:50522565-50522584 None:intergenic 30.0%
ATTTAAATTGCAAAGCAGTG+TGG + chr5_1:50522659-50522678 Msa0735330:three_prime_UTR 30.0%
!! TAGTATAAGGCTTTAGAAGG+TGG - chr5_1:50515256-50515275 None:intergenic 35.0%
!! GAAGTGTCCCAATGTTTTTA+AGG + chr5_1:50515395-50515414 Msa0735330:CDS 35.0%
CAAAGCAGTCATGAAAATGA+AGG - chr5_1:50515485-50515504 None:intergenic 35.0%
!! GTTTTCTTTCTCTGTTTCTC+TGG - chr5_1:50515607-50515626 None:intergenic 35.0%
GGACGTAACTATTGCAATAA+TGG + chr5_1:50516180-50516199 Msa0735330:intron 35.0%
ATATTCACCAACCTATGTTG+GGG - chr5_1:50516299-50516318 None:intergenic 35.0%
CACAACATGGGAAAATTACA+AGG - chr5_1:50516413-50516432 None:intergenic 35.0%
ACGCATGTCTAACTAATATG+CGG - chr5_1:50516750-50516769 None:intergenic 35.0%
AGGGCAATGATAGGTATATA+AGG - chr5_1:50516951-50516970 None:intergenic 35.0%
!!! TGAAGTTTTAGGGCAATGAT+AGG - chr5_1:50516960-50516979 None:intergenic 35.0%
TCAACGAGGTCAAGTAATAT+GGG - chr5_1:50517001-50517020 None:intergenic 35.0%
ATAGGTCAAGTAATATGGGA+CGG + chr5_1:50517218-50517237 Msa0735330:intron 35.0%
TTCTTCTCTCCTTTATTGGA+GGG - chr5_1:50517337-50517356 None:intergenic 35.0%
ATTCTTCTCTCCTTTATTGG+AGG - chr5_1:50517338-50517357 None:intergenic 35.0%
TGCATTCTTCTCTCCTTTAT+TGG - chr5_1:50517341-50517360 None:intergenic 35.0%
CCTCTCAAAGAATCTTTGTT+GGG - chr5_1:50517367-50517386 None:intergenic 35.0%
ACCTCTCAAAGAATCTTTGT+TGG - chr5_1:50517368-50517387 None:intergenic 35.0%
CATTGATGCCATAAAGTCTA+AGG + chr5_1:50517396-50517415 Msa0735330:CDS 35.0%
GTAATTCAAGCATCTTTGAG+GGG - chr5_1:50518322-50518341 None:intergenic 35.0%
GTGTAATTCAAGCATCTTTG+AGG - chr5_1:50518994-50519013 None:intergenic 35.0%
!! ATTTTAACATAAGAGGGGAG+AGG - chr5_1:50518348-50518367 None:intergenic 35.0%
!! AATTTACTTTTCAAGGGAGG+GGG - chr5_1:50518376-50518395 None:intergenic 35.0%
TTAAGCATCATATAAGGGAG+GGG - chr5_1:50518406-50518425 None:intergenic 35.0%
!!! TATGTTTTGAAAAAGAGGGG+AGG + chr5_1:50518938-50518957 Msa0735330:intron 35.0%
!!! ATGTTTTGAAAAAGAGGGGA+GGG + chr5_1:50518939-50518958 Msa0735330:intron 35.0%
AGAAAAGTGGAGGGAAAAAT+GGG - chr5_1:50519101-50519120 None:intergenic 35.0%
AGAAAAGTGGAGGGAAAAAT+GGG - chr5_1:50519101-50519120 None:intergenic 35.0%
AATCCAATGACTCAGAAAAG+TGG - chr5_1:50519683-50519702 None:intergenic 35.0%
!! AAGCTCTAAGGTGTTGTTAT+GGG - chr5_1:50520445-50520464 None:intergenic 35.0%
!! AAAGCTCTAAGGTGTTGTTA+TGG - chr5_1:50520446-50520465 None:intergenic 35.0%
GAATCTATTTCGTTTGGCAA+TGG + chr5_1:50520838-50520857 Msa0735330:intron 35.0%
CGTTATGTTTAGCAAAATCG+CGG - chr5_1:50520982-50521001 None:intergenic 35.0%
! TATCATATTTTGCAGCTTGG+AGG + chr5_1:50521173-50521192 Msa0735330:intron 35.0%
! ATCATATTTTGCAGCTTGGA+GGG + chr5_1:50521174-50521193 Msa0735330:intron 35.0%
CCAAGTTTAACCTTCCAAAA+AGG - chr5_1:50521200-50521219 None:intergenic 35.0%
!! CCTTTTTGGAAGGTTAAACT+TGG + chr5_1:50521197-50521216 Msa0735330:CDS 35.0%
GAAGGTTAAACTTGGAAGAA+GGG + chr5_1:50521205-50521224 Msa0735330:CDS 35.0%
CCTATTGATAAGGTTGCTAA+GGG - chr5_1:50521291-50521310 None:intergenic 35.0%
ACCTATTGATAAGGTTGCTA+AGG - chr5_1:50521292-50521311 None:intergenic 35.0%
TATCACACATTTGGTTGACT+AGG + chr5_1:50521455-50521474 Msa0735330:intron 35.0%
CTTTAGATTATCAAACCACC+AGG - chr5_1:50521860-50521879 None:intergenic 35.0%
AAAGCTCTTGATCAGAATGA+AGG - chr5_1:50522236-50522255 None:intergenic 35.0%
! TCTGATCAAGAGCTTTTCAA+TGG + chr5_1:50522240-50522259 Msa0735330:CDS 35.0%
TGCTACTGCAATGATTAAGA+TGG + chr5_1:50522326-50522345 Msa0735330:CDS 35.0%
GCTACTGCAATGATTAAGAT+GGG + chr5_1:50522327-50522346 Msa0735330:CDS 35.0%
CTGAAATATCGATCTTATCC+AGG - chr5_1:50522423-50522442 None:intergenic 35.0%
AAGTACATATACCCCAAAAG+TGG + chr5_1:50522550-50522569 Msa0735330:three_prime_UTR 35.0%
!! AAAGAATACCACCACTTTTG+GGG - chr5_1:50522564-50522583 None:intergenic 35.0%
! CTAAAGAATACCACCACTTT+TGG - chr5_1:50522566-50522585 None:intergenic 35.0%
!! GTGACAAAAGTGTCACTTTA+AGG + chr5_1:50522681-50522700 Msa0735330:three_prime_UTR 35.0%
!! ATAAGGCTTTAGAAGGTGGA+TGG - chr5_1:50515252-50515271 None:intergenic 40.0%
!!! CTCACTAGTTTTCTAAGTGG+TGG - chr5_1:50515749-50515768 None:intergenic 40.0%
ATCCAGCACTAAATAGTGTG+AGG + chr5_1:50515807-50515826 Msa0735330:intron 40.0%
ATCCTCACACTATTTAGTGC+TGG - chr5_1:50515812-50515831 None:intergenic 40.0%
! TTTTCATGTCGTTACGCTAC+TGG + chr5_1:50516101-50516120 Msa0735330:intron 40.0%
AAATCGCTCTCAAAGATGAG+TGG - chr5_1:50516269-50516288 None:intergenic 40.0%
ATTTACCATGTCCCCAACAT+AGG + chr5_1:50516285-50516304 Msa0735330:intron 40.0%
GTCAACGAGGTCAAGTAATA+TGG - chr5_1:50517002-50517021 None:intergenic 40.0%
! TATTGATAACAGGGCTGTGA+TGG + chr5_1:50517289-50517308 Msa0735330:intron 40.0%
CCCAACAAAGATTCTTTGAG+AGG + chr5_1:50517364-50517383 Msa0735330:CDS 40.0%
TGATGCCATAAAGTCTAAGG+TGG + chr5_1:50517399-50517418 Msa0735330:CDS 40.0%
TGACTCCACCTTAGACTTTA+TGG - chr5_1:50517407-50517426 None:intergenic 40.0%
TCTACAGTCTCTCTACATAG+AGG - chr5_1:50517764-50517783 None:intergenic 40.0%
ATGTAGAGAGACTGTAGACT+AGG + chr5_1:50517766-50517785 Msa0735330:intron 40.0%
TACCTTTGTAAGTGCCCTTT+GGG + chr5_1:50518073-50518092 Msa0735330:intron 40.0%
GGCATAACATGCAATGTATG+TGG - chr5_1:50518177-50518196 None:intergenic 40.0%
ATTCAATCTTCTCTTAGGGG+AGG + chr5_1:50518896-50518915 Msa0735330:intron 40.0%
TTCAATCTTCTCTTAGGGGA+GGG + chr5_1:50518897-50518916 Msa0735330:intron 40.0%
!!! TGTTTTGAAAAAGAGGGGAG+GGG + chr5_1:50518940-50518959 Msa0735330:intron 40.0%
TAGGGCAACAATAGCTTGAA+GGG - chr5_1:50519068-50519087 None:intergenic 40.0%
TTAGGGCAACAATAGCTTGA+AGG - chr5_1:50519069-50519088 None:intergenic 40.0%
AAAAGTGGAGGGAAAAATGG+GGG - chr5_1:50519099-50519118 None:intergenic 40.0%
GAAAAGTGGAGGGAAAAATG+GGG - chr5_1:50519100-50519119 None:intergenic 40.0%
CAGAAAAGTGGAGGGAAAAA+TGG - chr5_1:50519102-50519121 None:intergenic 40.0%
GCTAAATGTGCAAGATCCAA+TGG - chr5_1:50519127-50519146 None:intergenic 40.0%
TATGTCAACGTGTGGAAAGA+CGG - chr5_1:50519321-50519340 None:intergenic 40.0%
TAGGGCAACAATAGCTTGAA+GGG - chr5_1:50519068-50519087 None:intergenic 40.0%
TTAGGGCAACAATAGCTTGA+AGG - chr5_1:50519069-50519088 None:intergenic 40.0%
AAAAGTGGAGGGAAAAATGG+GGG - chr5_1:50519099-50519118 None:intergenic 40.0%
GAAAAGTGGAGGGAAAAATG+GGG - chr5_1:50519100-50519119 None:intergenic 40.0%
CAGAAAAGTGGAGGGAAAAA+TGG - chr5_1:50519102-50519121 None:intergenic 40.0%
CAATGACTCAGAAAAGTGGA+GGG - chr5_1:50519679-50519698 None:intergenic 40.0%
TATGTCAACGTGTGGAAAGA+CGG - chr5_1:50519321-50519340 None:intergenic 40.0%
TTAAAACCGCCAAAAAAGGG+CGG - chr5_1:50520273-50520292 None:intergenic 40.0%
TTAAAACCGCCAAAAAAGGG+CGG - chr5_1:50520273-50520292 None:intergenic 40.0%
!! AAGGTGTTGTTATGGGTAGT+TGG - chr5_1:50520438-50520457 None:intergenic 40.0%
GTCTAGTGGTAAAAGCTCTA+AGG - chr5_1:50520457-50520476 None:intergenic 40.0%
TACAAAACCCGTACATCGTA+CGG + chr5_1:50520784-50520803 Msa0735330:intron 40.0%
ATAGACGTTTCAACGAGTCA+TGG + chr5_1:50520870-50520889 Msa0735330:intron 40.0%
GGAAGGTTAAACTTGGAAGA+AGG + chr5_1:50521204-50521223 Msa0735330:CDS 40.0%
AGGTTGCTAAGGGTAGAAAA+GGG - chr5_1:50521281-50521300 None:intergenic 40.0%
AAGGTTGCTAAGGGTAGAAA+AGG - chr5_1:50521282-50521301 None:intergenic 40.0%
CCCTTAGCAACCTTATCAAT+AGG + chr5_1:50521288-50521307 Msa0735330:CDS 40.0%
TTAAAGAGAAAATGGGACCC+TGG + chr5_1:50521839-50521858 Msa0735330:intron 40.0%
TTCTTAGGAGCTCACACAAT+TGG + chr5_1:50522012-50522031 Msa0735330:intron 40.0%
AGGAATTGTCCAAGGAAAAG+TGG + chr5_1:50522114-50522133 Msa0735330:CDS 40.0%
!!! GGTTTGGTGTTTTGAAGTCT+AGG - chr5_1:50522167-50522186 None:intergenic 40.0%
! GATCAAGAGCTTTTCAATGG+AGG + chr5_1:50522243-50522262 Msa0735330:CDS 40.0%
!! TGGAGGATCTACTGATTCAT+TGG + chr5_1:50522260-50522279 Msa0735330:CDS 40.0%
GGAAATAACAAGCCTCTTAC+CGG + chr5_1:50522348-50522367 Msa0735330:CDS 40.0%
! TCTAATCTCCCCTTTTGATC+CGG - chr5_1:50522370-50522389 None:intergenic 40.0%
GATCAAAAGGGGAGATTAGA+AGG + chr5_1:50522370-50522389 Msa0735330:CDS 40.0%
AATGCAGGAGAGCCAATTAA+AGG + chr5_1:50522394-50522413 Msa0735330:CDS 40.0%
AGAGCCAATTAAAGGAAACC+TGG + chr5_1:50522402-50522421 Msa0735330:exon 40.0%
! TTGAAGGCGTGTTTGATCTT+TGG + chr5_1:50522444-50522463 Msa0735330:three_prime_UTR 40.0%
TACATATACCCCAAAAGTGG+TGG + chr5_1:50522553-50522572 Msa0735330:three_prime_UTR 40.0%
AGCAACAGCAGAGTGAACAA+CGG - chr5_1:50515430-50515449 None:intergenic 45.0%
GTCAAGTAATATGGGACGGA+GGG - chr5_1:50517222-50517241 None:intergenic 45.0%
CGAGGTCAAGTAATATGGGA+CGG - chr5_1:50516997-50517016 None:intergenic 45.0%
GTCAAGTAATATGGGACGGA+GGG + chr5_1:50517222-50517241 Msa0735330:intron 45.0%
TCAAGTAATATGGGACGGAG+GGG + chr5_1:50517223-50517242 Msa0735330:intron 45.0%
GATGACACACCCTCCAATAA+AGG + chr5_1:50517325-50517344 Msa0735330:CDS 45.0%
AACAGAATCACGAGCAGCAA+TGG - chr5_1:50517467-50517486 None:intergenic 45.0%
AGAGACTGTAGACTAGGATG+TGG + chr5_1:50517772-50517791 Msa0735330:intron 45.0%
!! ACGTGTGTTGGCTATGTATG+TGG - chr5_1:50517955-50517974 None:intergenic 45.0%
CATACATAGCCAACACACGT+TGG + chr5_1:50517955-50517974 Msa0735330:intron 45.0%
TCGAACACACAACCTTCTGA+GGG - chr5_1:50518008-50518027 None:intergenic 45.0%
ATCGAACACACAACCTTCTG+AGG - chr5_1:50518009-50518028 None:intergenic 45.0%
GTACCTTTGTAAGTGCCCTT+TGG + chr5_1:50518072-50518091 Msa0735330:intron 45.0%
! TTCAAGCATCTTTGAGGGGA+GGG - chr5_1:50518318-50518337 None:intergenic 45.0%
! ATTCAAGCATCTTTGAGGGG+AGG - chr5_1:50518319-50518338 None:intergenic 45.0%
TCAATCTTCTCTTAGGGGAG+GGG + chr5_1:50518898-50518917 Msa0735330:intron 45.0%
AAAGTGGAGGGAAAAATGGG+GGG - chr5_1:50519098-50519117 None:intergenic 45.0%
CAATGGCTCAGAAAAGTGGA+GGG - chr5_1:50519110-50519129 None:intergenic 45.0%
GATCCAATGGCTCAGAAAAG+TGG - chr5_1:50519114-50519133 None:intergenic 45.0%
ATGTCAACGTGTGGAAAGAC+GGG - chr5_1:50519320-50519339 None:intergenic 45.0%
AAAGTGGAGGGAAAAATGGG+GGG - chr5_1:50519098-50519117 None:intergenic 45.0%
CCAATGACTCAGAAAAGTGG+AGG - chr5_1:50519680-50519699 None:intergenic 45.0%
!! CCTCCACTTTTCTGAGTCAT+TGG + chr5_1:50519677-50519696 Msa0735330:intron 45.0%
ATGTCAACGTGTGGAAAGAC+GGG - chr5_1:50519320-50519339 None:intergenic 45.0%
TTTAAACCCGCCAAAAAGGG+CGG - chr5_1:50520187-50520206 None:intergenic 45.0%
GGCGGGATTAGGGTTAATTA+AGG - chr5_1:50520169-50520188 None:intergenic 45.0%
TAAAACCGCCAAAAAAGGGC+GGG - chr5_1:50520272-50520291 None:intergenic 45.0%
TAAAACCGCCAAAAAAGGGC+GGG - chr5_1:50520272-50520291 None:intergenic 45.0%
ACAAAACCCGTACATCGTAC+GGG + chr5_1:50520785-50520804 Msa0735330:intron 45.0%
ACTCTAACCCGTACGATGTA+CGG - chr5_1:50520795-50520814 None:intergenic 45.0%
ACTGTTTGCATCATTGAGGC+TGG - chr5_1:50521243-50521262 None:intergenic 45.0%
AGCCTCAATGATGCAAACAG+TGG + chr5_1:50521242-50521261 Msa0735330:CDS 45.0%
CACCACTGTTTGCATCATTG+AGG - chr5_1:50521247-50521266 None:intergenic 45.0%
TTGCTAAGGGTAGAAAAGGG+AGG - chr5_1:50521278-50521297 None:intergenic 45.0%
AGCTCAAGGACTCTCTACTA+AGG + chr5_1:50521316-50521335 Msa0735330:CDS 45.0%
AGGACTCTCTACTAAGGACA+TGG + chr5_1:50521322-50521341 Msa0735330:CDS 45.0%
ACTCTCTACTAAGGACATGG+TGG + chr5_1:50521325-50521344 Msa0735330:CDS 45.0%
!! GTACTCTGACTCTAGAGTCT+TGG + chr5_1:50521687-50521706 Msa0735330:intron 45.0%
AGGAGCTCACACAATTGGAA+AGG + chr5_1:50522017-50522036 Msa0735330:intron 45.0%
CTCACACAATTGGAAAGGCA+AGG + chr5_1:50522022-50522041 Msa0735330:CDS 45.0%
TATTTGCCAAGTCAAGGCAG+AGG + chr5_1:50522094-50522113 Msa0735330:CDS 45.0%
ACAATTCCTCTGCCTTGACT+TGG - chr5_1:50522103-50522122 None:intergenic 45.0%
AAGCCTCTTACCGGATCAAA+AGG + chr5_1:50522357-50522376 Msa0735330:CDS 45.0%
AGCCTCTTACCGGATCAAAA+GGG + chr5_1:50522358-50522377 Msa0735330:CDS 45.0%
!!! ACAAAAATTTAATAATTTTT+TGG - chr5_1:50516340-50516359 None:intergenic 5.0%
!!! ATGAATTAATTTTTTTTAAA+TGG - chr5_1:50518523-50518542 None:intergenic 5.0%
TGTTGCTAGAGAACCTCGCA+TGG + chr5_1:50515443-50515462 Msa0735330:CDS 50.0%
GTTGCTAGAGAACCTCGCAT+GGG + chr5_1:50515444-50515463 Msa0735330:CDS 50.0%
ACCATGTCCCCAACATAGGT+TGG + chr5_1:50516289-50516308 Msa0735330:intron 50.0%
ACCAACCTATGTTGGGGACA+TGG - chr5_1:50516293-50516312 None:intergenic 50.0%
TTTGTGAAGTCACGCGCACA+CGG - chr5_1:50516797-50516816 None:intergenic 50.0%
GGTCAAGTAATATGGGACGG+AGG - chr5_1:50517221-50517240 None:intergenic 50.0%
CATACGTGACAGAGTCAACG+AGG - chr5_1:50517015-50517034 None:intergenic 50.0%
GGTCAAGTAATATGGGACGG+AGG + chr5_1:50517221-50517240 Msa0735330:intron 50.0%
CAAGTAATATGGGACGGAGG+GGG + chr5_1:50517224-50517243 Msa0735330:intron 50.0%
ATCAGCACAAGAGACCACAC+CGG - chr5_1:50517437-50517456 None:intergenic 50.0%
!! ACACGTTGGCTCAGTTGGTA+AGG + chr5_1:50517969-50517988 Msa0735330:CDS 50.0%
ACATACCACTTCCCCTCAGA+AGG + chr5_1:50517993-50518012 Msa0735330:CDS 50.0%
CGAACACACAACCTTCTGAG+GGG - chr5_1:50518007-50518026 None:intergenic 50.0%
! AGTTTAGGTGGATTCGGCTC+CGG - chr5_1:50518129-50518148 None:intergenic 50.0%
! TCAAGCATCTTTGAGGGGAG+GGG - chr5_1:50518317-50518336 None:intergenic 50.0%
CCAATGGCTCAGAAAAGTGG+AGG - chr5_1:50519111-50519130 None:intergenic 50.0%
!! CCTCCACTTTTCTGAGCCAT+TGG + chr5_1:50519108-50519127 Msa0735330:intron 50.0%
TTAAACCCGCCAAAAAGGGC+GGG - chr5_1:50520186-50520205 None:intergenic 50.0%
!!! ACCCTAATCCCGCCCTTTTT+TGG + chr5_1:50520175-50520194 Msa0735330:intron 50.0%
GCCAAAAAAGGGCGGGATTA+GGG - chr5_1:50520265-50520284 None:intergenic 50.0%
!!! CTAATCCCGCCCTTTTTTGG+CGG + chr5_1:50520264-50520283 Msa0735330:intron 50.0%
GCCAAAAAAGGGCGGGATTA+GGG - chr5_1:50520265-50520284 None:intergenic 50.0%
!!! CTAATCCCGCCCTTTTTTGG+CGG + chr5_1:50520264-50520283 Msa0735330:intron 50.0%
CTCTAACCCGTACGATGTAC+GGG - chr5_1:50520794-50520813 None:intergenic 50.0%
GACGTTTCAACGAGTCATGG+TGG + chr5_1:50520873-50520892 Msa0735330:intron 50.0%
CTAAGGGTAGAAAAGGGAGG+TGG - chr5_1:50521275-50521294 None:intergenic 50.0%
!! AAGGACATGGTGGCCTTATC+TGG + chr5_1:50521335-50521354 Msa0735330:CDS 50.0%
GGCATGACATGAAGTCTACG+TGG - chr5_1:50521498-50521517 None:intergenic 50.0%
AAGAGAAAATGGGACCCTGG+TGG + chr5_1:50521842-50521861 Msa0735330:intron 50.0%
CAAGGCAGAGGAATTGTCCA+AGG + chr5_1:50522106-50522125 Msa0735330:CDS 50.0%
GCCTCTTACCGGATCAAAAG+GGG + chr5_1:50522359-50522378 Msa0735330:CDS 50.0%
! TCCCCTTTTGATCCGGTAAG+AGG - chr5_1:50522363-50522382 None:intergenic 50.0%
GGGAGATTAGAAGGCAATGC+AGG + chr5_1:50522379-50522398 Msa0735330:CDS 50.0%
AGAAGAGATCCTCCCATGCG+AGG - chr5_1:50515459-50515478 None:intergenic 55.0%
!! GGACGGAGGGGGTATGATTT+TGG + chr5_1:50517235-50517254 Msa0735330:intron 55.0%
AAGGTGGAGTCAGTATGCCC+CGG + chr5_1:50517415-50517434 Msa0735330:CDS 55.0%
TCAGCACAAGAGACCACACC+GGG - chr5_1:50517436-50517455 None:intergenic 55.0%
CCAACTGAGCCAACGTGTGT+TGG - chr5_1:50517967-50517986 None:intergenic 55.0%
!! CCAACACACGTTGGCTCAGT+TGG + chr5_1:50517964-50517983 Msa0735330:CDS 55.0%
! CACAACCTTCTGAGGGGAAG+TGG - chr5_1:50518001-50518020 None:intergenic 55.0%
CACCAACACCGTCCTCACAT+CGG - chr5_1:50518040-50518059 None:intergenic 55.0%
!! GACGGTGTTGGTGAGTGATC+TGG + chr5_1:50518047-50518066 Msa0735330:intron 55.0%
!! GGCCCAAAGGGCACTTACAA+AGG - chr5_1:50518078-50518097 None:intergenic 55.0%
TTGTAAGTGCCCTTTGGGCC+CGG + chr5_1:50518078-50518097 Msa0735330:intron 55.0%
!! CTAATCCCGCCCTTTTTGGC+GGG + chr5_1:50520178-50520197 Msa0735330:intron 55.0%
CGCCAAAAAAGGGCGGGATT+AGG - chr5_1:50520266-50520285 None:intergenic 55.0%
!!! GCCCTAATCCCGCCCTTTTT+TGG + chr5_1:50520339-50520358 Msa0735330:intron 55.0%
CGCCAAAAAAGGGCGGGATT+AGG - chr5_1:50520266-50520285 None:intergenic 55.0%
! TGCAGCTTGGAGGGCCTTTT+TGG + chr5_1:50521183-50521202 Msa0735330:intron 55.0%
! GCTTGGAGGGCCTTTTTGGA+AGG + chr5_1:50521187-50521206 Msa0735330:intron 55.0%
GCTAGAGAACCTCGCATGGG+AGG + chr5_1:50515447-50515466 Msa0735330:CDS 60.0%
CAGCACAAGAGACCACACCG+GGG - chr5_1:50517435-50517454 None:intergenic 60.0%
TGCCGATGTGAGGACGGTGT+TGG + chr5_1:50518035-50518054 Msa0735330:CDS 60.0%
GGAGTCAGTATGCCCCGGTG+TGG + chr5_1:50517420-50517439 Msa0735330:CDS 65.0%
CGATTCCCGCTGCCGATGTG+AGG + chr5_1:50518025-50518044 Msa0735330:CDS 65.0%
TCCCGCTGCCGATGTGAGGA+CGG + chr5_1:50518029-50518048 Msa0735330:CDS 65.0%
ACCGTCCTCACATCGGCAGC+GGG - chr5_1:50518033-50518052 None:intergenic 65.0%
CACCGTCCTCACATCGGCAG+CGG - chr5_1:50518034-50518053 None:intergenic 65.0%
TAAGTGCCCTTTGGGCCCGG+AGG + chr5_1:50518081-50518100 Msa0735330:intron 65.0%
TCCGGTCACCACCAGGGTCA+GGG - chr5_1:50518111-50518130 None:intergenic 65.0%
TTCGGCTCCGGTCACCACCA+GGG - chr5_1:50518117-50518136 None:intergenic 65.0%
ATTCGGCTCCGGTCACCACC+AGG - chr5_1:50518118-50518137 None:intergenic 65.0%
GTCACCACCAGGGTCAGGGC+AGG - chr5_1:50518107-50518126 None:intergenic 70.0%
! GCCCTGACCCTGGTGGTGAC+CGG + chr5_1:50518107-50518126 Msa0735330:intron 70.0%
CTCCGGTCACCACCAGGGTC+AGG - chr5_1:50518112-50518131 None:intergenic 70.0%
GGCAGGCCTCCGGGCCCAAA+GGG - chr5_1:50518090-50518109 None:intergenic 75.0%
CAGGGTCAGGGCAGGCCTCC+GGG - chr5_1:50518099-50518118 None:intergenic 75.0%
CCAGGGTCAGGGCAGGCCTC+CGG - chr5_1:50518100-50518119 None:intergenic 75.0%
GAGGCCTGCCCTGACCCTGG+TGG + chr5_1:50518100-50518119 Msa0735330:intron 75.0%
! GGGCAGGCCTCCGGGCCCAA+AGG - chr5_1:50518091-50518110 None:intergenic 80.0%
! CCGGAGGCCTGCCCTGACCC+TGG + chr5_1:50518097-50518116 Msa0735330:intron 80.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 50515178 50522708 50515178 ID=Msa0735330;Name=Msa0735330
chr5_1 mRNA 50515178 50522708 50515178 ID=Msa0735330-mRNA-1;Parent=Msa0735330;Name=Msa0735330-mRNA-1;_AED=0.32;_eAED=0.32;_QI=107|0.6|0.83|0.83|0.8|0.66|6|267|357
chr5_1 exon 50515178 50515509 50515178 ID=Msa0735330-mRNA-1:exon:14240;Parent=Msa0735330-mRNA-1
chr5_1 exon 50517301 50517492 50517301 ID=Msa0735330-mRNA-1:exon:14241;Parent=Msa0735330-mRNA-1
chr5_1 exon 50517964 50518056 50517964 ID=Msa0735330-mRNA-1:exon:14242;Parent=Msa0735330-mRNA-1
chr5_1 exon 50521188 50521356 50521188 ID=Msa0735330-mRNA-1:exon:14243;Parent=Msa0735330-mRNA-1
chr5_1 exon 50522019 50522465 50522019 ID=Msa0735330-mRNA-1:exon:14244;Parent=Msa0735330-mRNA-1
chr5_1 exon 50522494 50522708 50522494 ID=Msa0735330-mRNA-1:exon:14245;Parent=Msa0735330-mRNA-1
chr5_1 five_prime_UTR 50515178 50515284 50515178 ID=Msa0735330-mRNA-1:five_prime_utr;Parent=Msa0735330-mRNA-1
chr5_1 CDS 50515285 50515509 50515285 ID=Msa0735330-mRNA-1:cds;Parent=Msa0735330-mRNA-1
chr5_1 CDS 50517301 50517492 50517301 ID=Msa0735330-mRNA-1:cds;Parent=Msa0735330-mRNA-1
chr5_1 CDS 50517964 50518056 50517964 ID=Msa0735330-mRNA-1:cds;Parent=Msa0735330-mRNA-1
chr5_1 CDS 50521188 50521356 50521188 ID=Msa0735330-mRNA-1:cds;Parent=Msa0735330-mRNA-1
chr5_1 CDS 50522019 50522413 50522019 ID=Msa0735330-mRNA-1:cds;Parent=Msa0735330-mRNA-1
chr5_1 three_prime_UTR 50522414 50522465 50522414 ID=Msa0735330-mRNA-1:three_prime_utr;Parent=Msa0735330-mRNA-1
chr5_1 three_prime_UTR 50522494 50522708 50522494 ID=Msa0735330-mRNA-1:three_prime_utr;Parent=Msa0735330-mRNA-1
Gene Sequence

>Msa0735330

ATGGCACTTTCTTCTTCTAAAGTTTCACTAAACATTTTTTGCTTTGTTTTGTTCATGTTTTTTCTTATAGATGGTTCTTTTTCTCAACTATCTGAAAATTTCTATGCTAAGAAGTGTCCCAATGTTTTTAAGGCTGTAAATTCCGTTGTTCACTCTGCTGTTGCTAGAGAACCTCGCATGGGAGGATCTCTTCTTCGCCTTCATTTTCATGACTGCTTTGTTAATGGCTGTGATGGATCAGTGCTACTTGATGACACACCCTCCAATAAAGGAGAGAAGAATGCACTTCCCAACAAAGATTCTTTGAGAGGTTTTGAAGTCATTGATGCCATAAAGTCTAAGGTGGAGTCAGTATGCCCCGGTGTGGTCTCTTGTGCTGATATTCTAGCCATTGCTGCTCGTGATTCTGTTGTAAATCCAACACACGTTGGCTCAGTTGGTAAGGAACATACCACTTCCCCTCAGAAGGTTGTGTGTTCGATTCCCGCTGCCGATGTGAGGACGGTGTTGCTTGGAGGGCCTTTTTGGAAGGTTAAACTTGGAAGAAGGGATTCAAAAACAGCCAGCCTCAATGATGCAAACAGTGGTGTAATTCCACCTCCCTTTTCTACCCTTAGCAACCTTATCAATAGGTTTAAAGCTCAAGGACTCTCTACTAAGGACATGGTGGCCTTATCTGGAGCTCACACAATTGGAAAGGCAAGGTGTACCGTTTATAGAGATCATATTTACAATGATACAAATATTGATAGTTTATTTGCCAAGTCAAGGCAGAGGAATTGTCCAAGGAAAAGTGGTACAATAAAAGACAACAATGTAGCTGTCCTAGACTTCAAAACACCAAACCATTTTGATAACTTATACTACAAGAATCTCATCAACAAAAAGGGACTCCTTCATTCTGATCAAGAGCTTTTCAATGGAGGATCTACTGATTCATTGGTTAAAAGTTATAGCAATAATCAAAATGCATTTGAATCAGATTTTGCTACTGCAATGATTAAGATGGGAAATAACAAGCCTCTTACCGGATCAAAAGGGGAGATTAGAAGGCAATGCAGGAGAGCCAATTAA
Protein sequence

>Msa0735330

MALSSSKVSLNIFCFVLFMFFLIDGSFSQLSENFYAKKCPNVFKAVNSVVHSAVAREPRMGGSLLRLHFHDCFVNGCDGSVLLDDTPSNKGEKNALPNKDSLRGFEVIDAIKSKVESVCPGVVSCADILAIAARDSVVNPTHVGSVGKEHTTSPQKVVCSIPAADVRTVLLGGPFWKVKLGRRDSKTASLNDANSGVIPPPFSTLSNLINRFKAQGLSTKDMVALSGAHTIGKARCTVYRDHIYNDTNIDSLFAKSRQRNCPRKSGTIKDNNVAVLDFKTPNHFDNLYYKNLINKKGLLHSDQELFNGGSTDSLVKSYSNNQNAFESDFATAMIKMGNNKPLTGSKGEIRRQCRRAN*