AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0814260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0814260 MtrunA17_Chr5g0432441 97.239 326 9 0 1 326 1 326 0.0 649
Msa0814260 MtrunA17_Chr3g0106921 72.013 318 88 1 9 326 4 320 1.66e-171 478
Msa0814260 MtrunA17_Chr3g0129051 65.123 324 108 4 3 326 4 322 1.46e-149 423
Msa0814260 MtrunA17_Chr5g0438021 64.444 315 110 2 12 326 13 325 4.86e-147 417
Msa0814260 MtrunA17_Chr3g0129061 63.722 317 112 3 10 326 9 322 4.61e-138 394
Msa0814260 MtrunA17_Chr4g0013171 61.300 323 121 2 5 326 2 321 1.72e-135 387
Msa0814260 MtrunA17_Chr3g0129041 63.344 311 112 2 16 326 14 322 1.83e-133 382
Msa0814260 MtrunA17_Chr4g0013201 60.000 300 116 2 27 326 43 338 2.99e-131 377
Msa0814260 MtrunA17_Chr4g0013191 59.416 308 118 4 22 326 37 340 7.30e-129 371
Msa0814260 MtrunA17_Chr7g0244461 58.333 312 126 2 15 326 5 312 5.50e-128 368
Msa0814260 MtrunA17_Chr3g0114451 58.934 319 120 4 15 326 4 318 6.34e-128 368
Msa0814260 MtrunA17_Chr4g0013181 63.051 295 105 2 33 326 62 353 1.17e-126 366
Msa0814260 MtrunA17_Chr7g0244451 60.000 310 120 2 17 326 11 316 1.57e-125 362
Msa0814260 MtrunA17_Chr2g0320071 57.962 314 126 3 15 326 8 317 1.61e-125 362
Msa0814260 MtrunA17_Chr4g0043391 57.006 314 132 3 15 326 12 324 6.22e-125 360
Msa0814260 MtrunA17_Chr4g0038161 56.190 315 134 3 13 326 9 320 1.26e-124 360
Msa0814260 MtrunA17_Chr4g0038151 58.000 300 124 2 28 326 23 321 3.96e-124 358
Msa0814260 MtrunA17_Chr4g0038171 56.688 314 133 3 15 326 9 321 1.12e-123 357
Msa0814260 MtrunA17_Chr2g0320101 57.325 314 128 3 15 326 8 317 5.85e-123 355
Msa0814260 MtrunA17_Chr3g0106901 58.769 325 124 4 7 326 4 323 2.66e-122 354
Msa0814260 MtrunA17_Chr5g0432341 56.522 322 130 7 10 326 5 321 1.25e-121 352
Msa0814260 MtrunA17_Chr5g0432351 55.901 322 132 7 10 326 5 321 1.21e-120 350
Msa0814260 MtrunA17_Chr2g0320091 55.911 313 134 3 15 326 9 318 3.63e-119 346
Msa0814260 MtrunA17_Chr3g0107881 55.312 320 134 6 12 326 9 324 6.81e-119 345
Msa0814260 MtrunA17_Chr1g0213061 53.495 329 142 5 1 326 1 321 5.27e-118 343
Msa0814260 MtrunA17_Chr2g0320061 55.625 320 136 4 9 326 3 318 9.91e-118 342
Msa0814260 MtrunA17_Chr5g0432331 54.908 326 135 8 6 326 34 352 1.76e-117 343
Msa0814260 MtrunA17_Chr7g0224371 55.455 330 135 7 1 326 1 322 3.86e-117 341
Msa0814260 MtrunA17_Chr2g0320051 56.766 303 126 3 25 326 20 318 7.14e-116 337
Msa0814260 MtrunA17_Chr2g0320031 53.943 317 139 4 13 326 7 319 1.40e-112 329
Msa0814260 MtrunA17_Chr5g0402571 50.467 321 148 3 13 326 10 326 4.59e-106 313
Msa0814260 MtrunA17_Chr5g0402581 50.156 321 149 3 13 326 10 326 1.10e-105 311
Msa0814260 MtrunA17_Chr5g0404721 52.787 305 132 4 30 326 30 330 2.65e-105 311
Msa0814260 MtrunA17_Chr1g0175561 49.533 321 148 5 16 326 10 326 7.93e-104 307
Msa0814260 MtrunA17_Chr4g0070951 51.534 326 140 6 13 326 10 329 4.11e-103 305
Msa0814260 MtrunA17_Chr8g0372601 51.792 307 136 4 28 326 28 330 1.55e-102 304
Msa0814260 MtrunA17_Chr7g0258811 47.988 323 152 6 15 326 54 371 2.68e-101 302
Msa0814260 MtrunA17_Chr2g0299691 51.220 328 139 6 14 326 37 358 1.46e-100 300
Msa0814260 MtrunA17_Chr2g0292101 47.962 319 153 4 17 326 12 326 2.57e-100 299
Msa0814260 MtrunA17_Chr2g0292091 47.095 327 160 5 9 326 3 325 3.46e-99 296
Msa0814260 MtrunA17_Chr2g0291751 48.503 334 158 5 3 326 1 330 1.43e-98 295
Msa0814260 MtrunA17_Chr4g0068621 51.475 305 138 4 28 326 36 336 3.72e-98 293
Msa0814260 MtrunA17_Chr1g0155611 51.634 306 135 4 30 326 46 347 8.72e-98 292
Msa0814260 MtrunA17_Chr2g0292151 49.096 332 156 4 4 326 3 330 4.47e-97 291
Msa0814260 MtrunA17_Chr2g0292181 48.758 322 152 4 14 326 22 339 7.64e-97 290
Msa0814260 MtrunA17_Chr2g0292251 49.518 311 144 4 25 326 23 329 3.09e-95 286
Msa0814260 MtrunA17_Chr2g0292241 47.720 329 157 5 8 326 7 330 4.15e-95 286
Msa0814260 MtrunA17_Chr2g0292211 47.385 325 155 6 13 326 22 341 1.14e-94 285
Msa0814260 MtrunA17_Chr2g0292111 47.904 334 160 6 3 326 1 330 4.47e-94 283
Msa0814260 MtrunA17_Chr5g0432401 49.091 330 118 8 1 325 1 285 7.75e-93 278
Msa0814260 MtrunA17_Chr5g0400331 49.839 311 137 5 30 326 26 331 1.14e-92 279
Msa0814260 MtrunA17_Chr2g0292271 46.769 325 157 6 13 326 11 330 2.84e-92 278
Msa0814260 MtrunA17_Chr5g0421411 49.653 288 131 6 50 326 1 285 3.20e-91 273
Msa0814260 MtrunA17_Chr4g0013721 46.945 311 151 5 23 326 93 396 6.59e-90 275
Msa0814260 MtrunA17_Chr4g0013821 46.405 306 150 5 28 326 26 324 3.37e-89 270
Msa0814260 MtrunA17_Chr2g0292291 45.031 322 165 4 14 326 14 332 6.23e-89 270
Msa0814260 MtrunA17_Chr2g0292261 45.988 324 158 5 14 326 13 330 1.82e-88 269
Msa0814260 MtrunA17_Chr6g0477071 44.062 320 169 5 8 326 32 342 7.55e-86 262
Msa0814260 MtrunA17_Chr1g0188431 41.667 336 177 6 1 326 1 327 1.19e-84 258
Msa0814260 MtrunA17_Chr4g0024121 41.486 323 176 5 12 326 9 326 1.14e-83 256
Msa0814260 MtrunA17_Chr2g0322861 44.062 320 164 7 16 326 73 386 1.00e-82 255
Msa0814260 MtrunA17_Chr1g0164891 44.884 303 154 5 34 326 93 392 4.64e-80 248
Msa0814260 MtrunA17_Chr3g0128061 41.667 324 179 3 10 326 6 326 2.70e-79 244
Msa0814260 MtrunA17_Chr7g0225221 42.769 325 174 7 7 326 3 320 5.09e-78 241
Msa0814260 MtrunA17_Chr1g0194151 40.774 336 186 5 1 326 1 333 8.06e-78 241
Msa0814260 MtrunA17_Chr1g0204011 39.815 324 178 7 11 326 8 322 1.73e-76 237
Msa0814260 MtrunA17_Chr2g0279041 41.846 325 167 8 15 326 10 325 1.81e-76 237
Msa0814260 MtrunA17_Chr1g0157051 42.587 317 164 7 15 322 7 314 7.85e-76 235
Msa0814260 MtrunA17_Chr6g0460711 40.064 312 182 3 16 326 7 314 7.85e-75 233
Msa0814260 MtrunA17_Chr5g0405991 41.640 317 168 6 17 326 10 316 2.09e-74 231
Msa0814260 MtrunA17_Chr1g0194271 40.000 335 183 5 8 326 8 340 4.74e-74 231
Msa0814260 MtrunA17_Chr4g0046131 42.651 347 169 8 1 322 1 342 6.33e-74 231
Msa0814260 MtrunA17_Chr6g0467161 43.377 302 156 6 30 326 45 336 7.15e-74 231
Msa0814260 MtrunA17_Chr4g0063671 41.479 311 161 6 28 326 19 320 1.67e-73 229
Msa0814260 MtrunA17_Chr8g0371381 40.446 314 160 6 25 326 21 319 8.02e-72 225
Msa0814260 MtrunA17_Chr2g0296621 40.328 305 161 6 30 326 50 341 9.99e-72 226
Msa0814260 MtrunA17_Chr4g0076211 40.333 300 159 6 35 326 46 333 3.51e-71 224
Msa0814260 MtrunA17_Chr7g0254201 39.274 303 170 4 26 323 16 309 1.65e-69 219
Msa0814260 MtrunA17_Chr7g0268501 39.498 319 177 7 15 326 11 320 1.01e-68 217
Msa0814260 MtrunA17_Chr7g0268521 39.498 319 177 7 15 326 11 320 1.01e-68 217
Msa0814260 MtrunA17_Chr3g0114461 56.771 192 78 3 136 326 5 192 7.37e-68 211
Msa0814260 MtrunA17_Chr1g0197411 37.462 331 189 7 11 326 3 330 9.27e-67 213
Msa0814260 MtrunA17_Chr7g0254231 38.255 298 175 4 30 326 22 311 1.83e-66 211
Msa0814260 MtrunA17_Chr6g0467251 37.651 332 189 7 1 322 1 324 6.41e-66 211
Msa0814260 MtrunA17_Chr6g0451571 38.580 324 179 8 17 326 17 334 8.79e-66 210
Msa0814260 MtrunA17_Chr2g0316791 38.138 333 168 8 28 324 74 404 1.04e-64 209
Msa0814260 MtrunA17_Chr8g0364291 38.700 323 185 5 13 326 6 324 1.52e-64 207
Msa0814260 MtrunA17_Chr2g0316481 38.739 333 166 9 28 324 74 404 2.95e-64 208
Msa0814260 MtrunA17_Chr5g0401431 38.318 321 178 8 16 322 11 325 5.32e-64 205
Msa0814260 MtrunA17_Chr2g0316191 38.024 334 168 8 28 324 74 405 6.75e-64 207
Msa0814260 MtrunA17_Chr4g0053871 40.566 318 174 9 13 322 10 320 1.09e-63 204
Msa0814260 MtrunA17_Chr2g0278671 39.937 318 166 7 23 326 17 323 1.09e-63 204
Msa0814260 MtrunA17_Chr2g0316831 38.138 333 168 8 28 324 110 440 3.15e-63 207
Msa0814260 MtrunA17_Chr2g0279061 44.231 260 125 6 74 322 12 262 7.37e-63 200
Msa0814260 MtrunA17_Chr4g0072091 41.479 311 159 10 29 326 23 323 7.82e-63 202
Msa0814260 MtrunA17_Chr5g0413051 36.808 307 184 4 29 326 72 377 7.86e-63 204
Msa0814260 MtrunA17_Chr4g0074851 36.137 321 199 4 10 326 10 328 1.68e-62 201
Msa0814260 MtrunA17_Chr6g0467121 36.257 342 191 7 1 326 33 363 2.97e-62 202
Msa0814260 MtrunA17_Chr1g0181431 36.424 302 188 3 27 326 24 323 1.03e-60 197
Msa0814260 MtrunA17_Chr1g0148021 37.462 331 189 7 9 326 3 328 1.09e-60 197
Msa0814260 MtrunA17_Chr3g0136751 35.276 326 192 5 11 326 6 322 1.17e-60 196
Msa0814260 MtrunA17_Chr1g0181481 37.542 301 184 3 28 326 25 323 1.55e-60 196
Msa0814260 MtrunA17_Chr4g0075241 35.016 317 196 4 16 326 15 327 3.12e-60 196
Msa0814260 MtrunA17_Chr1g0181511 36.545 301 187 3 28 326 25 323 4.97e-59 192
Msa0814260 MtrunA17_Chr2g0311251 36.228 334 174 9 28 325 9 339 1.11e-58 192
Msa0814260 MtrunA17_Chr2g0329641 36.156 307 181 5 29 326 35 335 1.20e-58 192
Msa0814260 MtrunA17_Chr2g0311241 33.333 375 170 9 28 325 58 429 1.24e-56 189
Msa0814260 MtrunA17_Chr4g0004591 30.312 320 158 5 30 325 77 355 1.28e-45 158
Msa0814260 MtrunA17_Chr2g0292281 41.121 214 103 4 122 326 17 216 5.10e-44 151
Msa0814260 MtrunA17_Chr3g0114491 57.812 128 48 1 19 140 1 128 5.86e-44 147
Msa0814260 MtrunA17_Chr2g0316141 35.821 268 151 8 76 324 11 276 1.52e-42 148
Msa0814260 MtrunA17_Chr2g0316181 35.821 268 151 8 76 324 11 276 1.52e-42 148
Msa0814260 MtrunA17_Chr2g0316811 38.095 231 117 5 28 234 48 276 4.85e-42 148
Msa0814260 MtrunA17_Chr5g0432321 53.719 121 51 3 151 271 17 132 8.51e-34 120
Msa0814260 MtrunA17_Chr1g0181501 35.602 191 119 3 138 326 1 189 8.37e-32 117
Msa0814260 MtrunA17_Chr5g0432361 52.128 94 42 2 234 325 16 108 1.66e-25 98.6
Msa0814260 MtrunA17_Chr6g0468731 65.714 70 20 2 69 138 22 87 3.25e-23 91.7
Msa0814260 MtrunA17_Chr3g0104101 39.161 143 74 5 195 326 9 149 2.34e-22 91.3
Msa0814260 MtrunA17_Chr4g0013811 50.000 78 38 1 137 214 2 78 3.65e-19 80.5
Msa0814260 MtrunA17_Chr1g0181491 38.182 110 66 2 28 137 10 117 2.22e-17 77.8
Msa0814260 MtrunA17_Chr7g0254181 41.837 98 53 2 100 197 29 122 2.05e-16 75.5
Msa0814260 MtrunA17_Chr1g0196191 54.286 70 31 1 68 137 23 91 1.33e-15 73.2
Msa0814260 MtrunA17_Chr2g0316771 29.609 179 92 5 178 322 4 182 7.14e-15 72.0
Msa0814260 MtrunA17_Chr5g0423911 41.791 67 39 0 256 322 1 67 1.37e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0814260 AT5G58390.1 65.705 312 106 1 15 326 6 316 3.24e-142 404
Msa0814260 AT5G05340.1 65.886 299 100 2 28 326 28 324 5.51e-142 404
Msa0814260 AT5G58400.1 62.420 314 117 1 13 326 13 325 4.50e-141 402
Msa0814260 AT1G14550.1 55.836 317 132 4 15 326 8 321 5.20e-120 348
Msa0814260 AT1G14540.1 50.784 319 151 4 10 326 1 315 4.66e-107 315
Msa0814260 AT5G06720.1 49.848 329 145 5 14 326 9 333 5.33e-106 313
Msa0814260 AT5G06730.1 47.633 338 161 6 1 326 1 334 2.87e-105 312
Msa0814260 AT4G36430.1 51.961 306 135 4 29 326 29 330 5.98e-105 310
Msa0814260 AT3G50990.1 51.613 310 138 5 25 326 36 341 1.07e-103 308
Msa0814260 AT5G66390.1 50.492 305 139 4 30 326 33 333 5.03e-103 306
Msa0814260 AT1G44970.1 50.641 312 141 4 24 326 39 346 5.32e-102 303
Msa0814260 AT2G18150.1 51.827 301 133 4 34 326 40 336 5.75e-102 303
Msa0814260 AT2G18140.1 50.331 302 138 4 33 326 38 335 1.64e-97 291
Msa0814260 AT4G16270.1 52.145 303 127 6 34 326 54 348 9.80e-97 290
Msa0814260 AT1G49570.1 50.658 304 138 4 28 322 46 346 8.23e-95 285
Msa0814260 AT1G68850.1 44.012 334 162 6 16 326 4 335 1.36e-94 284
Msa0814260 AT4G08770.1 47.799 318 145 6 23 326 17 327 3.29e-94 283
Msa0814260 AT5G19890.1 47.164 335 155 7 4 326 3 327 3.33e-94 283
Msa0814260 AT2G35380.1 45.833 336 171 3 1 326 1 335 1.58e-93 281
Msa0814260 AT4G08780.1 46.855 318 148 6 23 326 17 327 1.11e-92 280
Msa0814260 AT5G19880.1 47.077 325 155 6 15 326 9 329 2.87e-92 278
Msa0814260 AT2G38390.1 47.419 310 147 6 28 326 29 333 3.17e-92 278
Msa0814260 AT3G49110.1 47.205 322 147 7 21 326 22 336 1.47e-90 275
Msa0814260 AT3G32980.1 46.106 321 152 7 21 326 20 334 1.54e-90 275
Msa0814260 AT2G38380.1 47.419 310 147 6 28 326 29 333 1.82e-90 274
Msa0814260 AT3G49120.1 46.178 314 150 6 26 326 28 335 2.11e-88 269
Msa0814260 AT3G01190.1 43.750 320 160 9 17 326 12 321 1.57e-84 258
Msa0814260 AT2G22420.1 43.125 320 167 5 15 326 7 319 1.15e-82 253
Msa0814260 AT4G33420.1 43.168 322 171 6 8 326 13 325 1.35e-81 251
Msa0814260 AT4G33420.2 43.168 322 171 6 8 326 60 372 6.02e-81 251
Msa0814260 AT1G05260.1 43.125 320 165 8 17 326 13 325 1.03e-79 246
Msa0814260 AT1G71695.1 43.854 301 160 4 30 326 44 339 2.01e-79 246
Msa0814260 AT3G03670.1 40.062 322 179 5 13 326 6 321 3.11e-78 242
Msa0814260 AT5G17820.1 40.187 321 171 6 13 326 7 313 7.00e-77 238
Msa0814260 AT4G11290.1 40.683 322 176 7 15 326 10 326 2.78e-76 237
Msa0814260 AT5G51890.1 39.564 321 180 6 13 326 9 322 3.03e-76 237
Msa0814260 AT5G15180.1 39.941 338 180 10 3 326 1 329 7.39e-76 236
Msa0814260 AT5G17820.2 40.187 321 171 6 13 326 60 366 8.15e-76 237
Msa0814260 AT5G64120.1 41.000 300 160 6 34 326 39 328 2.60e-75 234
Msa0814260 AT2G41480.1 39.701 335 177 9 8 326 3 328 8.00e-75 233
Msa0814260 AT1G05240.1 40.594 303 163 6 30 322 26 321 1.09e-72 228
Msa0814260 AT1G05250.1 40.594 303 163 6 30 322 26 321 1.09e-72 228
Msa0814260 AT5G14130.1 39.937 318 177 5 17 326 19 330 2.01e-72 227
Msa0814260 AT1G30870.1 43.322 307 152 6 30 326 51 345 3.87e-72 227
Msa0814260 AT3G21770.1 40.506 316 173 7 19 325 18 327 6.14e-72 226
Msa0814260 AT5G14130.2 39.937 318 177 5 17 326 60 371 6.24e-72 227
Msa0814260 AT5G40150.1 39.739 307 169 6 28 326 30 328 9.69e-72 225
Msa0814260 AT5G42180.1 40.063 317 174 7 15 324 8 315 1.37e-71 225
Msa0814260 AT4G26010.1 39.355 310 176 6 16 323 7 306 4.42e-71 223
Msa0814260 AT4G26010.2 38.629 321 185 6 5 323 24 334 4.85e-71 224
Msa0814260 AT3G28200.1 38.889 306 172 6 28 326 19 316 3.82e-70 221
Msa0814260 AT2G35380.2 48.571 245 115 3 92 326 4 247 6.05e-70 218
Msa0814260 AT5G47000.1 40.968 310 174 5 22 326 25 330 8.48e-70 221
Msa0814260 AT5G39580.1 40.432 324 175 7 11 326 6 319 3.46e-69 219
Msa0814260 AT4G33870.1 34.670 349 185 6 18 325 54 400 8.59e-69 220
Msa0814260 AT1G77100.1 38.650 326 185 9 8 326 2 319 1.49e-67 214
Msa0814260 AT2G24800.1 39.228 311 167 5 28 326 29 329 1.96e-67 214
Msa0814260 AT4G17690.1 40.864 301 170 5 30 326 26 322 4.94e-67 213
Msa0814260 AT1G34510.1 39.172 314 175 7 17 326 8 309 6.59e-67 213
Msa0814260 AT5G64110.1 39.879 331 171 7 14 326 10 330 2.85e-66 211
Msa0814260 AT5G67400.1 40.323 310 167 7 25 322 22 325 4.12e-66 211
Msa0814260 AT4G37530.1 41.905 315 159 9 23 322 20 325 1.01e-65 210
Msa0814260 AT2G18980.1 39.329 328 177 8 11 326 6 323 2.52e-65 209
Msa0814260 AT4G31760.1 37.107 318 188 5 15 326 15 326 5.08e-64 206
Msa0814260 AT5G64100.1 39.474 304 162 6 33 326 40 331 8.08e-64 205
Msa0814260 AT4G37520.1 41.368 307 162 8 28 322 25 325 3.48e-63 203
Msa0814260 AT4G25980.1 35.693 339 192 8 1 326 1 326 1.29e-62 202
Msa0814260 AT1G24110.1 37.771 323 186 6 15 326 4 322 1.34e-62 202
Msa0814260 AT3G49960.1 38.199 322 179 8 13 322 12 325 6.41e-62 200
Msa0814260 AT4G37520.2 40.196 306 164 7 28 322 25 322 9.98e-62 199
Msa0814260 AT4G30170.1 40.193 311 164 8 28 326 25 325 1.49e-61 199
Msa0814260 AT2G34060.1 39.739 307 169 7 29 323 41 343 2.66e-61 199
Msa0814260 AT4G21960.1 37.793 299 182 3 30 326 31 327 5.12e-59 193
Msa0814260 AT2G37130.1 35.556 315 186 8 20 326 22 327 1.08e-56 187
Msa0814260 AT2G39040.1 38.835 309 175 7 29 326 45 350 2.01e-56 187
Msa0814260 AT2G37130.2 35.762 302 179 7 33 326 2 296 4.57e-56 184
Msa0814260 AT5G22410.1 36.418 335 188 10 1 323 1 322 5.39e-56 185
Msa0814260 AT4G37530.2 43.284 268 128 9 23 275 20 278 6.52e-56 183
Msa0814260 AT5G24070.1 38.971 272 150 5 64 326 71 335 1.49e-55 184
Msa0814260 AT2G43480.1 35.016 317 188 6 21 326 26 335 6.14e-54 180
Msa0814260 AT3G17070.1 32.927 328 202 8 14 326 15 339 3.76e-47 162
Msa0814260 AT5G39580.2 40.724 221 121 4 11 231 6 216 6.10e-44 151
Msa0814260 AT2G24800.2 41.379 203 109 4 28 229 29 222 2.84e-43 149
Msa0814260 AT4G25980.2 41.143 175 98 3 24 198 65 234 1.98e-40 143
Msa0814260 AT3G17070.2 32.700 263 165 7 72 326 18 276 7.72e-34 125
Msa0814260 AT4G32320.1 29.658 263 110 7 64 308 117 322 5.12e-18 84.0
Msa0814260 AT1G77490.2 27.586 261 144 9 64 307 106 338 1.69e-13 71.2
Msa0814260 AT1G77490.1 27.586 261 144 9 64 307 106 338 1.87e-13 71.2
Msa0814260 AT3G42570.1 33.613 119 75 3 83 198 32 149 7.62e-12 62.8

Find 87 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACTCCACCTTAGACTTTA+TGG 0.119850 5_3:-46186409 None:intergenic
CTACCCAGGTTTCCTTTAAT+TGG 0.214761 5_3:-46188681 None:intergenic
CTAAAGAATACCACCACTTT+TGG 0.231199 5_3:-46188837 None:intergenic
CAAGAATCTCATCAACAAAA+AGG 0.247712 5_3:+46188481 Msa0814260:CDS
TAGTATTAGTGTTTCATAAA+AGG 0.262056 5_3:+46188759 Msa0814260:intron
TGCAGCTTGGAGGGCCATTT+TGG 0.267352 5_3:+46187465 Msa0814260:intron
CCAAGTTTAACCTTCCAAAA+TGG 0.296962 5_3:-46187479 None:intergenic
TGTAGTATAAGTTATCAAAA+TGG 0.316765 5_3:-46188460 None:intergenic
AAGGACATGGTGGCCTTATC+TGG 0.324620 5_3:+46187617 Msa0814260:CDS
TTGCTTCCTAATCTCACCTT+TGG 0.333452 5_3:-46188648 None:intergenic
TTGAAGTTTAACTACATTCA+TGG 0.355840 5_3:-46188955 None:intergenic
AATGCAGGAGAGCCAATTAA+AGG 0.356166 5_3:+46188669 Msa0814260:CDS
GGAAATAACAATCCTCTTAC+CGG 0.368033 5_3:+46188623 Msa0814260:CDS
TATCCTACTACTTAGCAAAA+TGG 0.377250 5_3:+46184503 Msa0814260:exon
TTGTCTAAGTCTTTAGGGTT+AGG 0.379182 5_3:+46184398 None:intergenic
CCCTTAGCAACCTTATCAAT+AGG 0.384569 5_3:+46187570 Msa0814260:CDS
AGTCTTCTCTCCTTTATTAG+AGG 0.384702 5_3:-46186340 None:intergenic
AAGGTTGCTAAGGGTAGAAA+AGG 0.387632 5_3:-46187561 None:intergenic
TGCTACTGCAATGATTAAGA+TGG 0.388563 5_3:+46188601 Msa0814260:CDS
CATTGATGCCATAAAGTCTA+AGG 0.390648 5_3:+46186401 Msa0814260:CDS
TGGAGGATCTACTGATTCAT+TGG 0.391305 5_3:+46188535 Msa0814260:CDS
TAGTAGGATAAGGCTTTAGA+AGG 0.398620 5_3:-46184490 None:intergenic
GAGCTTTAAACCTATTGATA+AGG 0.399870 5_3:-46187580 None:intergenic
TACATTCATGGTGGATATGC+TGG 0.410160 5_3:-46188943 None:intergenic
GATGACACACCCTCTAATAA+AGG 0.415165 5_3:+46186330 Msa0814260:CDS
ACCTATTGATAAGGTTGCTA+AGG 0.417064 5_3:-46187571 None:intergenic
TCACCTTTGGATCCGGTAAG+AGG 0.424240 5_3:-46188635 None:intergenic
ACCTCTCAAAGAATCTTTGT+TGG 0.427591 5_3:-46186370 None:intergenic
CCTAATCTCACCTTTGGATC+CGG 0.432355 5_3:-46188642 None:intergenic
CCTCTCAAAGAATCTTTGTT+GGG 0.433102 5_3:-46186369 None:intergenic
GGAAGGTTAAACTTGGAAGA+AGG 0.441433 5_3:+46187486 Msa0814260:CDS
GTCTTCTCTCCTTTATTAGA+GGG 0.447683 5_3:-46186339 None:intergenic
ATGAATGTAGTTAAACTTCA+AGG 0.451673 5_3:+46188957 Msa0814260:three_prime_UTR
CCGGATCCAAAGGTGAGATT+AGG 0.455777 5_3:+46188642 Msa0814260:CDS
GAAGGTTAAACTTGGAAGAA+GGG 0.455829 5_3:+46187487 Msa0814260:CDS
GTAAATACGATCTCTATAAA+CGG 0.464729 5_3:-46188324 None:intergenic
TATAAGTTATCAAAATGGTT+TGG 0.466239 5_3:-46188455 None:intergenic
ATCAATAGGTTTAAAGCTCA+AGG 0.476560 5_3:+46187584 Msa0814260:CDS
ACAATTCCTCTGCCTTGACT+TGG 0.477817 5_3:-46188375 None:intergenic
TTCGTAGGAGCTCACACAAT+TGG 0.480998 5_3:+46188287 Msa0814260:intron
TAGGATAAGGCTTTAGAAGG+TGG 0.481597 5_3:-46184487 None:intergenic
ACTGTTTGCATCATTGAGGC+TGG 0.487052 5_3:-46187522 None:intergenic
GCTACTGCAATGATTAAGAT+GGG 0.493974 5_3:+46188602 Msa0814260:CDS
CCCAACAAAGATTCTTTGAG+AGG 0.507682 5_3:+46186369 Msa0814260:CDS
GTGAGATTAGGAAGCAATGC+AGG 0.517002 5_3:+46188654 Msa0814260:CDS
CTTTAGAAGGTGGATGGATG+TGG 0.527413 5_3:-46184477 None:intergenic
ATAAGGCTTTAGAAGGTGGA+TGG 0.528721 5_3:-46184483 None:intergenic
CACCACTGTTTGCATCATTG+AGG 0.529112 5_3:-46187526 None:intergenic
AGAGCCAATTAAAGGAAACC+TGG 0.533511 5_3:+46188677 Msa0814260:exon
AGCTCAAGGACTCTCTACTA+AGG 0.542515 5_3:+46187598 Msa0814260:CDS
CCTATTGATAAGGTTGCTAA+GGG 0.554792 5_3:-46187570 None:intergenic
AACAGAATCACGAGCAGCAA+TGG 0.556484 5_3:-46186469 None:intergenic
TCAGCACAAGAGACCACACC+GGG 0.558299 5_3:-46186438 None:intergenic
AAAGCTCTTGATCAGAATGA+AGG 0.559330 5_3:-46188508 None:intergenic
ATAGTTTATTTGCCAAGTCA+AGG 0.563167 5_3:+46188363 Msa0814260:CDS
AGGAATTGTCCAAGGAAAAG+TGG 0.565194 5_3:+46188389 Msa0814260:CDS
AGGTTGCTAAGGGTAGAAAA+GGG 0.568432 5_3:-46187560 None:intergenic
CTAAGGGTAGAAAAGGGAGA+TGG 0.585994 5_3:-46187554 None:intergenic
AATCCTCTTACCGGATCCAA+AGG 0.590917 5_3:+46188632 Msa0814260:CDS
TATTTGCCAAGTCAAGGCAG+AGG 0.591700 5_3:+46188369 Msa0814260:CDS
TTATATATAGAGATATATGA+TGG 0.594388 5_3:-46184436 None:intergenic
TGAATGTAGTTAAACTTCAA+GGG 0.595605 5_3:+46188958 Msa0814260:three_prime_UTR
AAGTACATATACCCCAAAAG+TGG 0.598310 5_3:+46188824 Msa0814260:three_prime_UTR
TAAGTCTTTAGGGTTAGGTG+AGG 0.602802 5_3:+46184403 None:intergenic
CAATTAAAGGAAACCTGGGT+AGG 0.602846 5_3:+46188682 Msa0814260:exon
AAGTTTAACTACATTCATGG+TGG 0.616737 5_3:-46188952 None:intergenic
CAAGGCAGAGGAATTGTCCA+AGG 0.617740 5_3:+46188381 Msa0814260:CDS
GTCGCTAGAGAACCTCGCAT+GGG 0.619429 5_3:+46184681 Msa0814260:CDS
TGTCGCTAGAGAACCTCGCA+TGG 0.621286 5_3:+46184680 Msa0814260:CDS
TGATGCCATAAAGTCTAAGG+TGG 0.622773 5_3:+46186404 Msa0814260:CDS
GCTAGAGAACCTCGCATGGG+AGG 0.623031 5_3:+46184684 Msa0814260:CDS
AGGAGCTCACACAATTGGAA+AGG 0.625011 5_3:+46188292 Msa0814260:intron
TACATATACCCCAAAAGTGG+TGG 0.626379 5_3:+46188827 Msa0814260:three_prime_UTR
GAGCCAATTAAAGGAAACCT+GGG 0.630806 5_3:+46188678 Msa0814260:exon
CTCACACAATTGGAAAGGCA+AGG 0.636642 5_3:+46188297 Msa0814260:CDS
AAGGTGGAGTCAGTATGCCC+CGG 0.647987 5_3:+46186420 Msa0814260:CDS
AAGTCTTTAGGGTTAGGTGA+GGG 0.650212 5_3:+46184404 None:intergenic
AGGAGAGATCCTCCCATGCG+AGG 0.655274 5_3:-46184693 None:intergenic
GGAGTCAGTATGCCCCGGTG+TGG 0.661070 5_3:+46186425 Msa0814260:CDS
AGGACTCTCTACTAAGGACA+TGG 0.666154 5_3:+46187604 Msa0814260:CDS
TCTGAAGTACGATCCTACCC+AGG 0.668018 5_3:-46188695 None:intergenic
ATCAGCACAAGAGACCACAC+CGG 0.684464 5_3:-46186439 None:intergenic
AGTCATGAAAATGAAGACGA+AGG 0.684805 5_3:-46184713 None:intergenic
AGCCTCAATGATGCAAACAG+TGG 0.715380 5_3:+46187524 Msa0814260:CDS
ACTCTCTACTAAGGACATGG+TGG 0.722310 5_3:+46187607 Msa0814260:CDS
AGCGACAGCAGAGTGAACAA+CGG 0.726357 5_3:-46184664 None:intergenic
CAGCACAAGAGACCACACCG+GGG 0.839989 5_3:-46186437 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATTGAATATATTATTTTT+TGG + chr5_3:46185278-46185297 Msa0814260:intron 10.0%
!! ATTTATTAGATAAAGATTAA+GGG - chr5_3:46185786-46185805 None:intergenic 10.0%
!! AATTTATTAGATAAAGATTA+AGG - chr5_3:46185787-46185806 None:intergenic 10.0%
!! TAATCTTTATCTAATAAATT+TGG + chr5_3:46185787-46185806 Msa0814260:intron 10.0%
!! TAATAATTGTATCATAATAA+TGG - chr5_3:46187694-46187713 None:intergenic 10.0%
!!! AATAATTAAATGTATTTTCT+TGG - chr5_3:46187870-46187889 None:intergenic 10.0%
!! AAGAAAATACATTTAATTAT+TGG + chr5_3:46187869-46187888 Msa0814260:intron 10.0%
!! TTATATATAGAGATATATGA+TGG - chr5_3:46184439-46184458 None:intergenic 15.0%
!! TTGGTTACTAAATAATAATA+TGG - chr5_3:46185206-46185225 None:intergenic 15.0%
!!! ACACAAATTTAGTAATTTTT+TGG - chr5_3:46185610-46185629 None:intergenic 15.0%
!! AAAAATTACTAAATTTGTGT+CGG + chr5_3:46185610-46185629 Msa0814260:intron 15.0%
!! AATTTAGTACATATTCAAAT+AGG - chr5_3:46185661-46185680 None:intergenic 15.0%
!! TTTATTAGATAAAGATTAAG+GGG - chr5_3:46185785-46185804 None:intergenic 15.0%
!!! TTTATTGAAGAGATTTTTAA+TGG + chr5_3:46186927-46186946 Msa0814260:intron 15.0%
!!! TTTTTGTCAAACTAAAAAAA+TGG + chr5_3:46187328-46187347 Msa0814260:intron 15.0%
!! TGTTGAAAATGAAATTTAAA+CGG - chr5_3:46187938-46187957 None:intergenic 15.0%
!!! AGAATCAATATATTTTTTCA+AGG - chr5_3:46188893-46188912 None:intergenic 15.0%
!!! TTGTTCATGTTTTTTCTTAT+AGG + chr5_3:46184570-46184589 Msa0814260:CDS 20.0%
!!! TGTTCATGTTTTTTCTTATA+GGG + chr5_3:46184571-46184590 Msa0814260:CDS 20.0%
!! TAACGAGAAAAATTTAGATT+AGG + chr5_3:46185061-46185080 Msa0814260:intron 20.0%
!! TAATATTGAGTGAATTGAAT+AGG + chr5_3:46185334-46185353 Msa0814260:intron 20.0%
!! AATATTGAGTGAATTGAATA+GGG + chr5_3:46185335-46185354 Msa0814260:intron 20.0%
!! AATATGTACTAAATTATGCA+TGG + chr5_3:46185666-46185685 Msa0814260:intron 20.0%
!!! TACTTTTAAATTCTTGAGAT+AGG + chr5_3:46185694-46185713 Msa0814260:intron 20.0%
!!! ACTTTTAAATTCTTGAGATA+GGG + chr5_3:46185695-46185714 Msa0814260:intron 20.0%
!!! AGAAATTTCTTTTAGAAACA+TGG + chr5_3:46185819-46185838 Msa0814260:intron 20.0%
!!! TAAATCACTTTTTTCTAAAC+AGG + chr5_3:46186284-46186303 Msa0814260:intron 20.0%
!!! AAATCACTTTTTTCTAAACA+GGG + chr5_3:46186285-46186304 Msa0814260:intron 20.0%
!!! GTTCATTATTAAACTTTTTC+TGG - chr5_3:46186565-46186584 None:intergenic 20.0%
!!! GAATTGACATCTAATTATTT+TGG + chr5_3:46186639-46186658 Msa0814260:intron 20.0%
!!! TTATTTTGGTGTTTGTAAAA+TGG + chr5_3:46186653-46186672 Msa0814260:intron 20.0%
!!! TATTTTGGTGTTTGTAAAAT+GGG + chr5_3:46186654-46186673 Msa0814260:intron 20.0%
!! AATATAATGTTTACAAGTCT+TGG + chr5_3:46186740-46186759 Msa0814260:intron 20.0%
!! TTATTAGAAGAAAAGAAATG+AGG - chr5_3:46187385-46187404 None:intergenic 20.0%
!! ATGTTTAAATTAGATGCAAT+AGG - chr5_3:46187656-46187675 None:intergenic 20.0%
!!! ATTAAATGTATTTTCTTGGT+TGG - chr5_3:46187866-46187885 None:intergenic 20.0%
!!! GTTACTATTCATTTTAACTT+TGG - chr5_3:46187914-46187933 None:intergenic 20.0%
!! TATAAGTTATCAAAATGGTT+TGG - chr5_3:46188458-46188477 None:intergenic 20.0%
!! TGTAGTATAAGTTATCAAAA+TGG - chr5_3:46188463-46188482 None:intergenic 20.0%
!! TAGTATTAGTGTTTCATAAA+AGG + chr5_3:46188759-46188778 Msa0814260:intron 20.0%
! TTTACAGCCTTAAAAACATT+GGG - chr5_3:46184642-46184661 None:intergenic 25.0%
! TTAGTAGTTGATCATAGTAA+TGG - chr5_3:46184870-46184889 None:intergenic 25.0%
!! ATTTCTTCCTCGATAAATTT+TGG + chr5_3:46185119-46185138 Msa0814260:intron 25.0%
!!! AACAACAGTACTTTTTTTAG+AGG + chr5_3:46185863-46185882 Msa0814260:intron 25.0%
!!! ACAACAGTACTTTTTTTAGA+GGG + chr5_3:46185864-46185883 Msa0814260:intron 25.0%
!! ATGTTTAAAGTAAAGAACGT+CGG - chr5_3:46186043-46186062 None:intergenic 25.0%
! ATTGTCTGATATGCTAAATA+TGG - chr5_3:46186144-46186163 None:intergenic 25.0%
!! CCTATGTTTATGAAGTTTTA+GGG - chr5_3:46186242-46186261 None:intergenic 25.0%
!! TCCTATGTTTATGAAGTTTT+AGG - chr5_3:46186243-46186262 None:intergenic 25.0%
!! ACTTCATAAACATAGGATTT+TGG + chr5_3:46186246-46186265 Msa0814260:intron 25.0%
!! AGTTTTTGCTGATAATTTTC+TGG - chr5_3:46186787-46186806 None:intergenic 25.0%
!! AATATGTGCATATAACTTGT+TGG - chr5_3:46186899-46186918 None:intergenic 25.0%
! TACTAGAACAAAACGAAAAT+TGG - chr5_3:46187039-46187058 None:intergenic 25.0%
! ATAATTTCGAAGAATCTGTT+TGG + chr5_3:46187131-46187150 Msa0814260:intron 25.0%
! AGTTATGTTTAGCAAAATCA+AGG - chr5_3:46187238-46187257 None:intergenic 25.0%
!! TTCTATTATATTTTGCAGCT+TGG + chr5_3:46187452-46187471 Msa0814260:intron 25.0%
!! AGTGTTATGTAAGTTGAATT+TGG - chr5_3:46188067-46188086 None:intergenic 25.0%
! TTTAGATTATCTGATCATCA+AGG - chr5_3:46188135-46188154 None:intergenic 25.0%
!! TGATCAGATAATCTAAAGTT+CGG + chr5_3:46188138-46188157 Msa0814260:intron 25.0%
!! CTGAAGTGATTAATGAATTT+TGG - chr5_3:46188244-46188263 None:intergenic 25.0%
! GTAAATACGATCTCTATAAA+CGG - chr5_3:46188327-46188346 None:intergenic 25.0%
! AAGAATCTCATCAACAAAAA+GGG + chr5_3:46188482-46188501 Msa0814260:CDS 25.0%
! TTGAAGTTTAACTACATTCA+TGG - chr5_3:46188958-46188977 None:intergenic 25.0%
! TTTTGCTAAGTAGTAGGATA+AGG - chr5_3:46184503-46184522 None:intergenic 30.0%
TATCCTACTACTTAGCAAAA+TGG + chr5_3:46184503-46184522 Msa0814260:exon 30.0%
GTTTACAGCCTTAAAAACAT+TGG - chr5_3:46184643-46184662 None:intergenic 30.0%
CATCATCATTAAATTCGTGA+CGG - chr5_3:46184944-46184963 None:intergenic 30.0%
AATTACGCCAAAATTTATCG+AGG - chr5_3:46185129-46185148 None:intergenic 30.0%
AGTAACCAATTGTTCATATG+AGG + chr5_3:46185217-46185236 Msa0814260:intron 30.0%
GAAATCCTCATATGAACAAT+TGG - chr5_3:46185225-46185244 None:intergenic 30.0%
ATTCACTCAATATTACTCAC+TGG - chr5_3:46185329-46185348 None:intergenic 30.0%
! TACTTTTCCTATCTCTTTCA+AGG + chr5_3:46185412-46185431 Msa0814260:intron 30.0%
TGACGTAACTATTGCAATAA+TGG + chr5_3:46185447-46185466 Msa0814260:intron 30.0%
ACGACATCAAAAAATTACAG+GGG - chr5_3:46185738-46185757 None:intergenic 30.0%
CACGACATCAAAAAATTACA+GGG - chr5_3:46185739-46185758 None:intergenic 30.0%
TCACGACATCAAAAAATTAC+AGG - chr5_3:46185740-46185759 None:intergenic 30.0%
!!! CAACAGTACTTTTTTTAGAG+GGG + chr5_3:46185865-46185884 Msa0814260:intron 30.0%
ACGCATGTCTAAATAATATG+AGG - chr5_3:46186069-46186088 None:intergenic 30.0%
CCCTAAAACTTCATAAACAT+AGG + chr5_3:46186239-46186258 Msa0814260:intron 30.0%
!! CTGGTGTCTTTAAAACATAT+TGG - chr5_3:46186768-46186787 None:intergenic 30.0%
GAGTGAGAAGTTATAATTCT+TGG + chr5_3:46187188-46187207 Msa0814260:intron 30.0%
! TATTATATTTTGCAGCTTGG+AGG + chr5_3:46187455-46187474 Msa0814260:intron 30.0%
! ATTATATTTTGCAGCTTGGA+GGG + chr5_3:46187456-46187475 Msa0814260:intron 30.0%
!! GAGCTTTAAACCTATTGATA+AGG - chr5_3:46187583-46187602 None:intergenic 30.0%
! ATCAATAGGTTTAAAGCTCA+AGG + chr5_3:46187584-46187603 Msa0814260:CDS 30.0%
AAAAAGACATGTACCAGATA+AGG - chr5_3:46187633-46187652 None:intergenic 30.0%
TGCTTCATATATCACACATT+TGG + chr5_3:46187724-46187743 Msa0814260:intron 30.0%
! CATTTTCGCTTAATATCGAA+GGG - chr5_3:46188110-46188129 None:intergenic 30.0%
TTTAATTCTTTGTGCTTCGT+AGG + chr5_3:46188272-46188291 Msa0814260:intron 30.0%
ATAGTTTATTTGCCAAGTCA+AGG + chr5_3:46188363-46188382 Msa0814260:CDS 30.0%
!! TTTATTGTACCACTTTTCCT+TGG - chr5_3:46188401-46188420 None:intergenic 30.0%
CAAGAATCTCATCAACAAAA+AGG + chr5_3:46188481-46188500 Msa0814260:CDS 30.0%
!! TAAAGAATACCACCACTTTT+GGG - chr5_3:46188839-46188858 None:intergenic 30.0%
AAGTTTAACTACATTCATGG+TGG - chr5_3:46188955-46188974 None:intergenic 30.0%
!! TAGTAGGATAAGGCTTTAGA+AGG - chr5_3:46184493-46184512 None:intergenic 35.0%
!! GAAGTGTCCCAATGTTTTTA+AGG + chr5_3:46184632-46184651 Msa0814260:CDS 35.0%
AGTCATGAAAATGAAGACGA+AGG - chr5_3:46184716-46184735 None:intergenic 35.0%
TAAGACTCCTTGAAAGAGAT+AGG - chr5_3:46185422-46185441 None:intergenic 35.0%
AAATCGCTCTCAAATATGAG+TGG - chr5_3:46185540-46185559 None:intergenic 35.0%
TATTCTCACCAACCTATGTT+GGG - chr5_3:46185571-46185590 None:intergenic 35.0%
ATATTCTCACCAACCTATGT+TGG - chr5_3:46185572-46185591 None:intergenic 35.0%
!!! CTTGAGATAGGGTGTTTTTT+TGG + chr5_3:46185706-46185725 Msa0814260:intron 35.0%
ACGTACATCAAGCTTCAAAA+AGG - chr5_3:46185993-46186012 None:intergenic 35.0%
!!! TGAAGTTTTAGGGCAATGAT+AGG - chr5_3:46186232-46186251 None:intergenic 35.0%
! TTTTCTAAACAGGGTTGTGA+TGG + chr5_3:46186294-46186313 Msa0814260:intron 35.0%
GTCTTCTCTCCTTTATTAGA+GGG - chr5_3:46186342-46186361 None:intergenic 35.0%
AGTCTTCTCTCCTTTATTAG+AGG - chr5_3:46186343-46186362 None:intergenic 35.0%
CCTCTCAAAGAATCTTTGTT+GGG - chr5_3:46186372-46186391 None:intergenic 35.0%
ACCTCTCAAAGAATCTTTGT+TGG - chr5_3:46186373-46186392 None:intergenic 35.0%
CATTGATGCCATAAAGTCTA+AGG + chr5_3:46186401-46186420 Msa0814260:CDS 35.0%
CCAAGTTTAACCTTCCAAAA+TGG - chr5_3:46187482-46187501 None:intergenic 35.0%
!! CCATTTTGGAAGGTTAAACT+TGG + chr5_3:46187479-46187498 Msa0814260:CDS 35.0%
GAAGGTTAAACTTGGAAGAA+GGG + chr5_3:46187487-46187506 Msa0814260:CDS 35.0%
CCTATTGATAAGGTTGCTAA+GGG - chr5_3:46187573-46187592 None:intergenic 35.0%
ACCTATTGATAAGGTTGCTA+AGG - chr5_3:46187574-46187593 None:intergenic 35.0%
TATCACACATTTGGTTGACT+AGG + chr5_3:46187733-46187752 Msa0814260:intron 35.0%
! CCATTTTCGCTTAATATCGA+AGG - chr5_3:46188111-46188130 None:intergenic 35.0%
CCTTCGATATTAAGCGAAAA+TGG + chr5_3:46188108-46188127 Msa0814260:intron 35.0%
AAAGCTCTTGATCAGAATGA+AGG - chr5_3:46188511-46188530 None:intergenic 35.0%
! TCTGATCAAGAGCTTTTCAA+TGG + chr5_3:46188515-46188534 Msa0814260:CDS 35.0%
TGCTACTGCAATGATTAAGA+TGG + chr5_3:46188601-46188620 Msa0814260:CDS 35.0%
GCTACTGCAATGATTAAGAT+GGG + chr5_3:46188602-46188621 Msa0814260:CDS 35.0%
GGAAATAACAATCCTCTTAC+CGG + chr5_3:46188623-46188642 Msa0814260:CDS 35.0%
TTGAAGACGTGTTTGATCTT+TGG + chr5_3:46188718-46188737 Msa0814260:intron 35.0%
AAGTACATATACCCCAAAAG+TGG + chr5_3:46188824-46188843 Msa0814260:three_prime_UTR 35.0%
!! AAAGAATACCACCACTTTTG+GGG - chr5_3:46188838-46188857 None:intergenic 35.0%
! CTAAAGAATACCACCACTTT+TGG - chr5_3:46188840-46188859 None:intergenic 35.0%
!! ATAAGGCTTTAGAAGGTGGA+TGG - chr5_3:46184486-46184505 None:intergenic 40.0%
!! TAGGATAAGGCTTTAGAAGG+TGG - chr5_3:46184490-46184509 None:intergenic 40.0%
!!! GTGCCATTTTGCTAAGTAGT+AGG - chr5_3:46184509-46184528 None:intergenic 40.0%
! TTTTCATGTCGTTACGCTAC+TGG + chr5_3:46185368-46185387 Msa0814260:intron 40.0%
ATTTACCATGTCCCCAACAT+AGG + chr5_3:46185556-46185575 Msa0814260:intron 40.0%
ATTCTCACCAACCTATGTTG+GGG - chr5_3:46185570-46185589 None:intergenic 40.0%
AAATTTAGACCGTGTGCATG+TGG + chr5_3:46186104-46186123 Msa0814260:intron 40.0%
TTTGTAAAGCCACATGCACA+CGG - chr5_3:46186116-46186135 None:intergenic 40.0%
GATGACACACCCTCTAATAA+AGG + chr5_3:46186330-46186349 Msa0814260:CDS 40.0%
CCCAACAAAGATTCTTTGAG+AGG + chr5_3:46186369-46186388 Msa0814260:CDS 40.0%
TGATGCCATAAAGTCTAAGG+TGG + chr5_3:46186404-46186423 Msa0814260:CDS 40.0%
TGACTCCACCTTAGACTTTA+TGG - chr5_3:46186412-46186431 None:intergenic 40.0%
TCTACAGTCTCTCTACATCA+AGG - chr5_3:46186834-46186853 None:intergenic 40.0%
ATGTAGAGAGACTGTAGACT+TGG + chr5_3:46186836-46186855 Msa0814260:intron 40.0%
!! GAATCTGTTTGGTTTGACGA+TGG + chr5_3:46187142-46187161 Msa0814260:intron 40.0%
! TCTTGGCTTTCTTGTTGACA+TGG + chr5_3:46187205-46187224 Msa0814260:intron 40.0%
GGAAGGTTAAACTTGGAAGA+AGG + chr5_3:46187486-46187505 Msa0814260:CDS 40.0%
AGGTTGCTAAGGGTAGAAAA+GGG - chr5_3:46187563-46187582 None:intergenic 40.0%
AAGGTTGCTAAGGGTAGAAA+AGG - chr5_3:46187564-46187583 None:intergenic 40.0%
CCCTTAGCAACCTTATCAAT+AGG + chr5_3:46187570-46187589 Msa0814260:CDS 40.0%
AGCATGACATGAAGTTTACG+TGG - chr5_3:46187776-46187795 None:intergenic 40.0%
AGGAATTGTCCAAGGAAAAG+TGG + chr5_3:46188389-46188408 Msa0814260:CDS 40.0%
!!! GGTTTGGTGTTTTGAAGTCT+AGG - chr5_3:46188442-46188461 None:intergenic 40.0%
! GATCAAGAGCTTTTCAATGG+AGG + chr5_3:46188518-46188537 Msa0814260:CDS 40.0%
!! TGGAGGATCTACTGATTCAT+TGG + chr5_3:46188535-46188554 Msa0814260:CDS 40.0%
TTGCTTCCTAATCTCACCTT+TGG - chr5_3:46188651-46188670 None:intergenic 40.0%
AATGCAGGAGAGCCAATTAA+AGG + chr5_3:46188669-46188688 Msa0814260:CDS 40.0%
AGAGCCAATTAAAGGAAACC+TGG + chr5_3:46188677-46188696 Msa0814260:exon 40.0%
GAGCCAATTAAAGGAAACCT+GGG + chr5_3:46188678-46188697 Msa0814260:exon 40.0%
CTACCCAGGTTTCCTTTAAT+TGG - chr5_3:46188684-46188703 None:intergenic 40.0%
CAATTAAAGGAAACCTGGGT+AGG + chr5_3:46188682-46188701 Msa0814260:exon 40.0%
TACATATACCCCAAAAGTGG+TGG + chr5_3:46188827-46188846 Msa0814260:three_prime_UTR 40.0%
!! TACATTCATGGTGGATATGC+TGG - chr5_3:46188946-46188965 None:intergenic 40.0%
! CTTTAGAAGGTGGATGGATG+TGG - chr5_3:46184480-46184499 None:intergenic 45.0%
AACAGAATCACGAGCAGCAA+TGG - chr5_3:46186472-46186491 None:intergenic 45.0%
GACTGTAGACTTGGATGAAG+TGG + chr5_3:46186845-46186864 Msa0814260:intron 45.0%
ACTGTTTGCATCATTGAGGC+TGG - chr5_3:46187525-46187544 None:intergenic 45.0%
AGCCTCAATGATGCAAACAG+TGG + chr5_3:46187524-46187543 Msa0814260:CDS 45.0%
CACCACTGTTTGCATCATTG+AGG - chr5_3:46187529-46187548 None:intergenic 45.0%
CTAAGGGTAGAAAAGGGAGA+TGG - chr5_3:46187557-46187576 None:intergenic 45.0%
AGCTCAAGGACTCTCTACTA+AGG + chr5_3:46187598-46187617 Msa0814260:CDS 45.0%
AGGACTCTCTACTAAGGACA+TGG + chr5_3:46187604-46187623 Msa0814260:CDS 45.0%
ACTCTCTACTAAGGACATGG+TGG + chr5_3:46187607-46187626 Msa0814260:CDS 45.0%
!! GTACTCTGACTCTAGAGTCT+TGG + chr5_3:46187962-46187981 Msa0814260:intron 45.0%
TTCGTAGGAGCTCACACAAT+TGG + chr5_3:46188287-46188306 Msa0814260:intron 45.0%
AGGAGCTCACACAATTGGAA+AGG + chr5_3:46188292-46188311 Msa0814260:intron 45.0%
CTCACACAATTGGAAAGGCA+AGG + chr5_3:46188297-46188316 Msa0814260:CDS 45.0%
TATTTGCCAAGTCAAGGCAG+AGG + chr5_3:46188369-46188388 Msa0814260:CDS 45.0%
ACAATTCCTCTGCCTTGACT+TGG - chr5_3:46188378-46188397 None:intergenic 45.0%
AATCCTCTTACCGGATCCAA+AGG + chr5_3:46188632-46188651 Msa0814260:CDS 45.0%
CCTAATCTCACCTTTGGATC+CGG - chr5_3:46188645-46188664 None:intergenic 45.0%
GTGAGATTAGGAAGCAATGC+AGG + chr5_3:46188654-46188673 Msa0814260:CDS 45.0%
AGCGACAGCAGAGTGAACAA+CGG - chr5_3:46184667-46184686 None:intergenic 50.0%
TGTGTGTGTGTGTGTGTGTG+TGG + chr5_3:46184801-46184820 Msa0814260:intron 50.0%
GTGTGTGTGTGTGTGTGTGT+GGG + chr5_3:46184802-46184821 Msa0814260:intron 50.0%
ACCATGTCCCCAACATAGGT+TGG + chr5_3:46185560-46185579 Msa0814260:intron 50.0%
ACCAACCTATGTTGGGGACA+TGG - chr5_3:46185564-46185583 None:intergenic 50.0%
ATCAGCACAAGAGACCACAC+CGG - chr5_3:46186442-46186461 None:intergenic 50.0%
GGCATGACATGCAATGTACG+TGG - chr5_3:46187018-46187037 None:intergenic 50.0%
!! AAGGACATGGTGGCCTTATC+TGG + chr5_3:46187617-46187636 Msa0814260:CDS 50.0%
CAAGGCAGAGGAATTGTCCA+AGG + chr5_3:46188381-46188400 Msa0814260:CDS 50.0%
TCACCTTTGGATCCGGTAAG+AGG - chr5_3:46188638-46188657 None:intergenic 50.0%
CCGGATCCAAAGGTGAGATT+AGG + chr5_3:46188642-46188661 Msa0814260:CDS 50.0%
! TCTGAAGTACGATCCTACCC+AGG - chr5_3:46188698-46188717 None:intergenic 50.0%
TGTCGCTAGAGAACCTCGCA+TGG + chr5_3:46184680-46184699 Msa0814260:CDS 55.0%
GTCGCTAGAGAACCTCGCAT+GGG + chr5_3:46184681-46184700 Msa0814260:CDS 55.0%
AAGGTGGAGTCAGTATGCCC+CGG + chr5_3:46186420-46186439 Msa0814260:CDS 55.0%
TCAGCACAAGAGACCACACC+GGG - chr5_3:46186441-46186460 None:intergenic 55.0%
! TGCAGCTTGGAGGGCCATTT+TGG + chr5_3:46187465-46187484 Msa0814260:intron 55.0%
!! GCTTGGAGGGCCATTTTGGA+AGG + chr5_3:46187469-46187488 Msa0814260:intron 55.0%
GCTAGAGAACCTCGCATGGG+AGG + chr5_3:46184684-46184703 Msa0814260:CDS 60.0%
AGGAGAGATCCTCCCATGCG+AGG - chr5_3:46184696-46184715 None:intergenic 60.0%
CAGCACAAGAGACCACACCG+GGG - chr5_3:46186440-46186459 None:intergenic 60.0%
GGAGTCAGTATGCCCCGGTG+TGG + chr5_3:46186425-46186444 Msa0814260:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 46184410 46188979 46184410 ID=Msa0814260;Name=Msa0814260
chr5_3 mRNA 46184410 46188979 46184410 ID=Msa0814260-mRNA-1;Parent=Msa0814260;Name=Msa0814260-mRNA-1;_AED=0.10;_eAED=0.10;_QI=112|1|1|1|0.75|0.6|5|264|326
chr5_3 exon 46184410 46184746 46184410 ID=Msa0814260-mRNA-1:exon:14027;Parent=Msa0814260-mRNA-1
chr5_3 exon 46186306 46186497 46186306 ID=Msa0814260-mRNA-1:exon:14028;Parent=Msa0814260-mRNA-1
chr5_3 exon 46187470 46187638 46187470 ID=Msa0814260-mRNA-1:exon:14029;Parent=Msa0814260-mRNA-1
chr5_3 exon 46188294 46188734 46188294 ID=Msa0814260-mRNA-1:exon:14030;Parent=Msa0814260-mRNA-1
chr5_3 exon 46188762 46188979 46188762 ID=Msa0814260-mRNA-1:exon:14031;Parent=Msa0814260-mRNA-1
chr5_3 five_prime_UTR 46184410 46184521 46184410 ID=Msa0814260-mRNA-1:five_prime_utr;Parent=Msa0814260-mRNA-1
chr5_3 CDS 46184522 46184746 46184522 ID=Msa0814260-mRNA-1:cds;Parent=Msa0814260-mRNA-1
chr5_3 CDS 46186306 46186497 46186306 ID=Msa0814260-mRNA-1:cds;Parent=Msa0814260-mRNA-1
chr5_3 CDS 46187470 46187638 46187470 ID=Msa0814260-mRNA-1:cds;Parent=Msa0814260-mRNA-1
chr5_3 CDS 46188294 46188688 46188294 ID=Msa0814260-mRNA-1:cds;Parent=Msa0814260-mRNA-1
chr5_3 three_prime_UTR 46188689 46188734 46188689 ID=Msa0814260-mRNA-1:three_prime_utr;Parent=Msa0814260-mRNA-1
chr5_3 three_prime_UTR 46188762 46188979 46188762 ID=Msa0814260-mRNA-1:three_prime_utr;Parent=Msa0814260-mRNA-1
Gene Sequence

>Msa0814260

ATGGCACTTTCTTCTTCTAAAGTTTCACTAAACTTTTTTTGCTTTGTTTTGTTCATGTTTTTTCTTATAGGGAGTTCTTTTTCTCAACTATCTGAAAATTTCTATGCTAAGAAGTGTCCCAATGTTTTTAAGGCTGTAAACTCCGTTGTTCACTCTGCTGTCGCTAGAGAACCTCGCATGGGAGGATCTCTCCTTCGTCTTCATTTTCATGACTGCTTTGTCAATGGTTGTGATGGATCAGTGCTACTTGATGACACACCCTCTAATAAAGGAGAGAAGACTGCACTTCCCAACAAAGATTCTTTGAGAGGTTTTGAAGTCATTGATGCCATAAAGTCTAAGGTGGAGTCAGTATGCCCCGGTGTGGTCTCTTGTGCTGATATTCTAGCCATTGCTGCTCGTGATTCTGTTGTAAATCTTGGAGGGCCATTTTGGAAGGTTAAACTTGGAAGAAGGGATTCAAAAACAGCCAGCCTCAATGATGCAAACAGTGGTGTAATTCCATCTCCCTTTTCTACCCTTAGCAACCTTATCAATAGGTTTAAAGCTCAAGGACTCTCTACTAAGGACATGGTGGCCTTATCTGGAGCTCACACAATTGGAAAGGCAAGGTGTACCGTTTATAGAGATCGTATTTACAATGATACAAATATTGATAGTTTATTTGCCAAGTCAAGGCAGAGGAATTGTCCAAGGAAAAGTGGTACAATAAAAGACAACAATGTAGCTGTCCTAGACTTCAAAACACCAAACCATTTTGATAACTTATACTACAAGAATCTCATCAACAAAAAGGGACTCCTTCATTCTGATCAAGAGCTTTTCAATGGAGGATCTACTGATTCATTGGTTAAAAGTTATAGCAATAATCAAAATGCATTTGAATCAGATTTTGCTACTGCAATGATTAAGATGGGAAATAACAATCCTCTTACCGGATCCAAAGGTGAGATTAGGAAGCAATGCAGGAGAGCCAATTAA
Protein sequence

>Msa0814260

MALSSSKVSLNFFCFVLFMFFLIGSSFSQLSENFYAKKCPNVFKAVNSVVHSAVAREPRMGGSLLRLHFHDCFVNGCDGSVLLDDTPSNKGEKTALPNKDSLRGFEVIDAIKSKVESVCPGVVSCADILAIAARDSVVNLGGPFWKVKLGRRDSKTASLNDANSGVIPSPFSTLSNLINRFKAQGLSTKDMVALSGAHTIGKARCTVYRDRIYNDTNIDSLFAKSRQRNCPRKSGTIKDNNVAVLDFKTPNHFDNLYYKNLINKKGLLHSDQELFNGGSTDSLVKSYSNNQNAFESDFATAMIKMGNNNPLTGSKGEIRKQCRRAN*