Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735580 | XP_003616047.1 | 99.593 | 246 | 1 | 0 | 1 | 246 | 1 | 246 | 0.0 | 510 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735580 | sp|Q680A5|KPRS4_ARATH | 79.508 | 244 | 49 | 1 | 8 | 251 | 25 | 267 | 1.01e-143 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735580 | G7K0V0 | 99.593 | 246 | 1 | 0 | 1 | 246 | 1 | 246 | 0.0 | 510 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0735580 | Msa0777560 | 0.982553 | 2.176881e-155 | -8.615850e-47 |
| Msa0735580 | Msa0814620 | 0.903987 | 1.964559e-79 | -8.615850e-47 |
| Msa0277600 | Msa0735580 | 0.813095 | 3.043767e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735580 | MtrunA17_Chr5g0432811 | 99.593 | 246 | 1 | 0 | 1 | 246 | 1 | 246 | 0.0 | 510 |
| Msa0735580 | MtrunA17_Chr3g0096511 | 98.780 | 246 | 3 | 0 | 1 | 246 | 1 | 246 | 0.0 | 507 |
| Msa0735580 | MtrunA17_Chr5g0412911 | 74.059 | 239 | 61 | 1 | 8 | 246 | 88 | 325 | 3.10e-128 | 370 |
| Msa0735580 | MtrunA17_Chr3g0096491 | 61.491 | 161 | 20 | 4 | 83 | 237 | 4 | 128 | 4.13e-55 | 174 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735580 | AT2G42910.1 | 79.508 | 244 | 49 | 1 | 8 | 251 | 25 | 267 | 1.02e-144 | 409 |
| Msa0735580 | AT1G10700.1 | 72.803 | 239 | 64 | 1 | 8 | 246 | 98 | 335 | 6.22e-128 | 370 |
| Msa0735580 | AT1G10700.2 | 71.503 | 193 | 54 | 1 | 8 | 200 | 98 | 289 | 1.76e-99 | 293 |
Find 81 sgRNAs with CRISPR-Local
Find 350 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGTTATTTATAAATATATT+TGG | 0.186047 | 5_1:+51016361 | None:intergenic |
| CAGAGACTTGAAACAGTTTC+AGG | 0.230437 | 5_1:+51013009 | None:intergenic |
| GTTGGGCCACCTCTTGAAAT+TGG | 0.235056 | 5_1:+51016121 | None:intergenic |
| AGTTTACCTGACACTCAATT+AGG | 0.236042 | 5_1:+51014300 | None:intergenic |
| GCCAGAGCTTTGACTGTAAC+TGG | 0.254674 | 5_1:+51013486 | None:intergenic |
| AGAAGGCATTTGCCTACTTT+TGG | 0.262156 | 5_1:-51013524 | Msa0735580:CDS |
| GTTGATGATTTAGTCCAATC+TGG | 0.298173 | 5_1:-51014329 | Msa0735580:CDS |
| CGCTTCCATGCACCATCATC+TGG | 0.347826 | 5_1:+51014533 | None:intergenic |
| AACATACCTCAATAAGATAT+AGG | 0.373181 | 5_1:+51013269 | None:intergenic |
| GTTGTAGCAGACGTTGCTTT+AGG | 0.373616 | 5_1:+51015680 | None:intergenic |
| GCATGAGATTTCTCATCAAC+AGG | 0.378547 | 5_1:-51013197 | Msa0735580:three_prime_UTR |
| AATTGAGCTTTGTGAATAAC+GGG | 0.383604 | 5_1:-51013392 | Msa0735580:three_prime_UTR |
| AGAGCTGAATGATGCCAAAA+AGG | 0.389793 | 5_1:+51016312 | None:intergenic |
| GTTTACCTGACACTCAATTA+GGG | 0.394592 | 5_1:+51014301 | None:intergenic |
| ACATACCTCAATAAGATATA+GGG | 0.418124 | 5_1:+51013270 | None:intergenic |
| TTGCAAGTTCTTCACAATCA+AGG | 0.418746 | 5_1:+51017674 | None:intergenic |
| GTCATTGCATTTCCAGATGA+TGG | 0.424723 | 5_1:-51014545 | Msa0735580:CDS |
| AAATTGAGCTTTGTGAATAA+CGG | 0.431173 | 5_1:-51013393 | Msa0735580:three_prime_UTR |
| TTTGAAGTATTGAGTCTAGC+AGG | 0.437700 | 5_1:-51013450 | Msa0735580:exon |
| TCATATATGACTAAACTAGT+TGG | 0.456462 | 5_1:+51016103 | None:intergenic |
| TGCAAGTTCTTCACAATCAA+GGG | 0.457166 | 5_1:+51017675 | None:intergenic |
| ATCCTTCAATGATTCTTAGT+AGG | 0.458870 | 5_1:-51013068 | Msa0735580:three_prime_UTR |
| GGGCACCCTAATTGAGTGTC+AGG | 0.460843 | 5_1:-51014306 | Msa0735580:intron |
| TTGATGATTTAGTCCAATCT+GGG | 0.464717 | 5_1:-51014328 | Msa0735580:CDS |
| CTCAAGGAAGGTCATGTCTC+TGG | 0.466819 | 5_1:-51014368 | Msa0735580:CDS |
| ATTTGTTGCTTCTTTCACAT+TGG | 0.469191 | 5_1:-51016239 | Msa0735580:CDS |
| ATACTCACATTATCAGCATC+AGG | 0.471492 | 5_1:+51015655 | None:intergenic |
| AATGATCCAGTTGGGAAGAA+AGG | 0.473072 | 5_1:+51016211 | None:intergenic |
| AGTTGTTCAAACACTTGAGC+TGG | 0.480569 | 5_1:+51016289 | None:intergenic |
| GCTAGACTCAATACTTCAAA+AGG | 0.480610 | 5_1:+51013453 | None:intergenic |
| TTGAACCCTATATCTTATTG+AGG | 0.482955 | 5_1:-51013275 | Msa0735580:three_prime_UTR |
| AATAATTGTCGAACAACTTG+TGG | 0.483377 | 5_1:+51014507 | None:intergenic |
| CATATATGACTAAACTAGTT+GGG | 0.489811 | 5_1:+51016104 | None:intergenic |
| ATATGACATTCATGCCCTGC+AGG | 0.491592 | 5_1:-51016086 | Msa0735580:intron |
| AGAGACTTGAAACAGTTTCA+GGG | 0.493704 | 5_1:+51013010 | None:intergenic |
| TCACTCTTCAGAATATCAAA+TGG | 0.496186 | 5_1:-51017621 | Msa0735580:CDS |
| AACTGGATCATTTGAGCGAA+TGG | 0.500509 | 5_1:-51016200 | Msa0735580:CDS |
| TGCCTACTAAGAATCATTGA+AGG | 0.503406 | 5_1:+51013066 | None:intergenic |
| AGAGAGAGAAAAGAGAAGAA+TGG | 0.503484 | 5_1:-51017740 | Msa0735580:exon |
| CCCAGTTACAGTCAAAGCTC+TGG | 0.506982 | 5_1:-51013487 | Msa0735580:CDS |
| TTCGCTCAAATGATCCAGTT+GGG | 0.520965 | 5_1:+51016203 | None:intergenic |
| AAGGTGACAAGAGGATAGTT+CGG | 0.530143 | 5_1:-51014391 | Msa0735580:CDS |
| AGAAAAGAGAAGAATGGCAA+TGG | 0.531717 | 5_1:-51017734 | Msa0735580:exon |
| TTTGAGCGAATGGAAGAAGA+AGG | 0.532177 | 5_1:-51016190 | Msa0735580:CDS |
| AATATTCCAATTTCAAGAGG+TGG | 0.547449 | 5_1:-51016127 | Msa0735580:CDS |
| ATTCGCTCAAATGATCCAGT+TGG | 0.550408 | 5_1:+51016202 | None:intergenic |
| TCAAATATTCCAATTTCAAG+AGG | 0.551790 | 5_1:-51016130 | Msa0735580:CDS |
| TTCAATGTGCTAAGCTCACA+AGG | 0.563177 | 5_1:+51013323 | None:intergenic |
| CCAGAGCTTTGACTGTAACT+GGG | 0.567033 | 5_1:+51013487 | None:intergenic |
| AGAATCTGTGATCCAAAAGT+AGG | 0.570262 | 5_1:+51013512 | None:intergenic |
| CTAAGCTCACAAGGATATGA+TGG | 0.571963 | 5_1:+51013332 | None:intergenic |
| CAACATCCGTGCAAGGGTGA+AGG | 0.572743 | 5_1:+51016153 | None:intergenic |
| AGGATAGTTCGGCTCAAGGA+AGG | 0.572954 | 5_1:-51014380 | Msa0735580:CDS |
| AAATATATTTGGAAACCCAT+CGG | 0.573432 | 5_1:+51016372 | None:intergenic |
| CAACTGCCTTCACCCTTGCA+CGG | 0.575482 | 5_1:-51016159 | Msa0735580:CDS |
| TTGAAGTATTGAGTCTAGCA+GGG | 0.577295 | 5_1:-51013449 | Msa0735580:exon |
| TTGAGCGAATGGAAGAAGAA+GGG | 0.584772 | 5_1:-51016189 | Msa0735580:CDS |
| CAAGAGGATAGTTCGGCTCA+AGG | 0.585535 | 5_1:-51014384 | Msa0735580:CDS |
| TATTTGACAACATCCGTGCA+AGG | 0.586552 | 5_1:+51016146 | None:intergenic |
| CATTTCCAGATGATGGTGCA+TGG | 0.590118 | 5_1:-51014538 | Msa0735580:CDS |
| AGCAGACGTTGCTTTAGGAG+AGG | 0.593619 | 5_1:+51015685 | None:intergenic |
| GTTGTTCGACAATTATTCAG+TGG | 0.594555 | 5_1:-51014501 | Msa0735580:intron |
| GGAATACCAGTCTCAAACAA+TGG | 0.599758 | 5_1:+51015706 | None:intergenic |
| TGAGCGAATGGAAGAAGAAG+GGG | 0.613969 | 5_1:-51016188 | Msa0735580:CDS |
| AACTGAAACACATTTCCTCA+AGG | 0.615850 | 5_1:-51013091 | Msa0735580:three_prime_UTR |
| CATTAAAACACAAACCTGCA+GGG | 0.622993 | 5_1:+51016072 | None:intergenic |
| ACTTGCAGAAGCCTCAGAGA+AGG | 0.630105 | 5_1:-51013541 | Msa0735580:intron |
| ATTTGACAACATCCGTGCAA+GGG | 0.634805 | 5_1:+51016147 | None:intergenic |
| TGATGATTTAGTCCAATCTG+GGG | 0.642420 | 5_1:-51014327 | Msa0735580:CDS |
| AGGTACGTGAAGGTGACAAG+AGG | 0.654440 | 5_1:-51014400 | Msa0735580:CDS |
| GAATCATTGAAGGATCCTTG+AGG | 0.666663 | 5_1:+51013076 | None:intergenic |
| TCAAGACAGAATTATAAACA+TGG | 0.667640 | 5_1:+51013146 | None:intergenic |
| GATGATTTAGTCCAATCTGG+GGG | 0.670939 | 5_1:-51014326 | Msa0735580:CDS |
| GTATGCACAAAGGTACGTGA+AGG | 0.671287 | 5_1:-51014410 | Msa0735580:CDS |
| CTCTTCAGAATATCAAATGG+AGG | 0.672816 | 5_1:-51017618 | Msa0735580:intron |
| GTAGGCAAATGCCTTCTCTG+AGG | 0.680450 | 5_1:+51013530 | None:intergenic |
| AAAGAAGCAACAAATAGACG+AGG | 0.695963 | 5_1:+51016247 | None:intergenic |
| GTGGCAGGTTGTATGCACAA+AGG | 0.717387 | 5_1:-51014420 | Msa0735580:intron |
| AAGAAGCAACAAATAGACGA+GGG | 0.724453 | 5_1:+51016248 | None:intergenic |
| GGTATGTTGAGTGTTAACAC+TGG | 0.755662 | 5_1:-51013254 | Msa0735580:three_prime_UTR |
| AATAACGCAGAAGAGCTCAG+AGG | 0.761164 | 5_1:-51016346 | Msa0735580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATATTTTTATACATGTT+TGG | - | chr5_1:51013211-51013230 | Msa0735580:three_prime_UTR | 10.0% |
| !!! | ATTGTTTTAAATTTTAAGAA+AGG | + | chr5_1:51015161-51015180 | None:intergenic | 10.0% |
| !!! | AATTTATTATTTTTATGATC+AGG | - | chr5_1:51016202-51016221 | Msa0735580:CDS | 10.0% |
| !! | TTTGTAATTAAAAATGAAAA+CGG | + | chr5_1:51016750-51016769 | None:intergenic | 10.0% |
| !!! | TTTTTTATTCTTTAACTGTT+TGG | + | chr5_1:51013518-51013537 | None:intergenic | 15.0% |
| !! | GCGTTATTTATAAATATATT+TGG | + | chr5_1:51014414-51014433 | None:intergenic | 15.0% |
| !!! | ATTTAAAACAATGTACTTTT+TGG | - | chr5_1:51015169-51015188 | Msa0735580:intron | 15.0% |
| !!! | TTTAAAACAATGTACTTTTT+GGG | - | chr5_1:51015170-51015189 | Msa0735580:intron | 15.0% |
| !! | AGAAAAAAGAAAAAAAAACA+AGG | + | chr5_1:51016069-51016088 | None:intergenic | 15.0% |
| !!! | TTTATAGTTGTCTAATTTTT+GGG | - | chr5_1:51016328-51016347 | Msa0735580:CDS | 15.0% |
| !! | TTGTAATTAAAAATGAAAAC+GGG | + | chr5_1:51016749-51016768 | None:intergenic | 15.0% |
| !! | AATATTTGTACAAAAAACAT+TGG | - | chr5_1:51016802-51016821 | Msa0735580:intron | 15.0% |
| !! | TAAATAGAGTGAAAATAAAA+TGG | - | chr5_1:51016873-51016892 | Msa0735580:intron | 15.0% |
| !! | GTAATTGATTAATTAAAAGT+TGG | - | chr5_1:51016895-51016914 | Msa0735580:intron | 15.0% |
| !!! | TTAGAATTTGAATTCATTTT+TGG | - | chr5_1:51017600-51017619 | Msa0735580:intron | 15.0% |
| !!! | AAATATAATCTTTTCCACAA+GGG | + | chr5_1:51013200-51013219 | None:intergenic | 20.0% |
| !!! | AAAATATAATCTTTTCCACA+AGG | + | chr5_1:51013201-51013220 | None:intergenic | 20.0% |
| !!! | TGACTTGTTATTATTAGATA+TGG | - | chr5_1:51013270-51013289 | Msa0735580:three_prime_UTR | 20.0% |
| !!! | TTTTCTAAAATAGTTCTTCA+AGG | - | chr5_1:51013570-51013589 | Msa0735580:intron | 20.0% |
| !!! | TTTCTAAAATAGTTCTTCAA+GGG | - | chr5_1:51013571-51013590 | Msa0735580:intron | 20.0% |
| !! | TTTATCACAACCAATATATA+AGG | + | chr5_1:51013598-51013617 | None:intergenic | 20.0% |
| !! | AAAATCATGAGAATACAATT+CGG | + | chr5_1:51014149-51014168 | None:intergenic | 20.0% |
| !! | AATGACATAACTTAAGAAAT+TGG | + | chr5_1:51014219-51014238 | None:intergenic | 20.0% |
| !! | ACATTACAAACAAACAAATT+AGG | - | chr5_1:51014303-51014322 | Msa0735580:intron | 20.0% |
| !! | ACAAAAAAACTATTCCAATT+TGG | + | chr5_1:51014331-51014350 | None:intergenic | 20.0% |
| !!! | TAGAAACTTATTGAGTTTTA+GGG | - | chr5_1:51014928-51014947 | Msa0735580:intron | 20.0% |
| !!! | TTTTTTATTTGTGATGGTTT+TGG | - | chr5_1:51015990-51016009 | Msa0735580:intron | 20.0% |
| !!! | TTTTTATTTGTGATGGTTTT+GGG | - | chr5_1:51015991-51016010 | Msa0735580:intron | 20.0% |
| !! | TTAAATACATAGATCCTTAT+GGG | + | chr5_1:51016304-51016323 | None:intergenic | 20.0% |
| !! | ATTAAATACATAGATCCTTA+TGG | + | chr5_1:51016305-51016324 | None:intergenic | 20.0% |
| !!! | GTTTATAGTTGTCTAATTTT+TGG | - | chr5_1:51016327-51016346 | Msa0735580:CDS | 20.0% |
| !!! | TTTTTGCTTTCAAATTTGAA+GGG | + | chr5_1:51017362-51017381 | None:intergenic | 20.0% |
| !!! | ATTTTTGCTTTCAAATTTGA+AGG | + | chr5_1:51017363-51017382 | None:intergenic | 20.0% |
| ! | CTAATAATAACAAGTCAACT+AGG | + | chr5_1:51013267-51013286 | None:intergenic | 25.0% |
| ! | ATACAACAAGATGATATACT+TGG | + | chr5_1:51013327-51013346 | None:intergenic | 25.0% |
| ! | TATATTTATGTTACAGCTTG+TGG | + | chr5_1:51013351-51013370 | None:intergenic | 25.0% |
| !! | ATTAAGTACACTTTTCTTAC+TGG | - | chr5_1:51013376-51013395 | Msa0735580:three_prime_UTR | 25.0% |
| ! | ATTTGCAACATGCAATATAA+AGG | - | chr5_1:51013720-51013739 | Msa0735580:intron | 25.0% |
| ! | TAGATTCAAACTAAATCATG+AGG | - | chr5_1:51013753-51013772 | Msa0735580:intron | 25.0% |
| !! | ACACTGCTTTAAATAATCAT+AGG | - | chr5_1:51013872-51013891 | Msa0735580:intron | 25.0% |
| ! | AAATAATCATAGGATTTGCA+AGG | - | chr5_1:51013882-51013901 | Msa0735580:intron | 25.0% |
| !! | GTGTTTATATGGAAGATTTT+AGG | + | chr5_1:51013965-51013984 | None:intergenic | 25.0% |
| ! | AAACAAATTAGGAACCAAAT+TGG | - | chr5_1:51014314-51014333 | Msa0735580:CDS | 25.0% |
| !! | GTTTTTGACCAAATTGATAA+CGG | - | chr5_1:51014349-51014368 | Msa0735580:CDS | 25.0% |
| ! | AAATATATTTGGAAACCCAT+CGG | + | chr5_1:51014403-51014422 | None:intergenic | 25.0% |
| ! | TCAAATATTCCAATTTCAAG+AGG | - | chr5_1:51014642-51014661 | Msa0735580:intron | 25.0% |
| ! | CATATATGACTAAACTAGTT+GGG | + | chr5_1:51014671-51014690 | None:intergenic | 25.0% |
| ! | TCATATATGACTAAACTAGT+TGG | + | chr5_1:51014672-51014691 | None:intergenic | 25.0% |
| !!! | TTGTGTTTTAATGCATTCAA+AGG | - | chr5_1:51014710-51014729 | Msa0735580:intron | 25.0% |
| ! | ATATTCAATAGCAATTCATG+AGG | + | chr5_1:51014782-51014801 | None:intergenic | 25.0% |
| !! | GTAGAAACTTATTGAGTTTT+AGG | - | chr5_1:51014927-51014946 | Msa0735580:intron | 25.0% |
| !!! | AGAAACTTATTGAGTTTTAG+GGG | - | chr5_1:51014929-51014948 | Msa0735580:intron | 25.0% |
| !! | CTAATGATTTGAAATTATGC+AGG | - | chr5_1:51015014-51015033 | Msa0735580:intron | 25.0% |
| ! | AACCATCACAAATAAAAAAC+CGG | + | chr5_1:51015989-51016008 | None:intergenic | 25.0% |
| !!! | TTTGGGTTGTTTTGATTTTA+AGG | - | chr5_1:51016008-51016027 | Msa0735580:intron | 25.0% |
| ! | AAATAATAAATTAAGGCTGC+AGG | + | chr5_1:51016194-51016213 | None:intergenic | 25.0% |
| ! | ATCCAAGTCGTAATTAAAAA+TGG | + | chr5_1:51016622-51016641 | None:intergenic | 25.0% |
| !!! | GAATTTTGTTTCACTGATAA+CGG | - | chr5_1:51016832-51016851 | Msa0735580:intron | 25.0% |
| !! | AAATTGAGCTTTGTGAATAA+CGG | - | chr5_1:51017379-51017398 | Msa0735580:intron | 25.0% |
| ! | ACATACCTCAATAAGATATA+GGG | + | chr5_1:51017505-51017524 | None:intergenic | 25.0% |
| ! | AACATACCTCAATAAGATAT+AGG | + | chr5_1:51017506-51017525 | None:intergenic | 25.0% |
| ! | TCAAGACAGAATTATAAACA+TGG | + | chr5_1:51017629-51017648 | None:intergenic | 25.0% |
| ! | CTTGATTAAAAAATCTTGCA+TGG | - | chr5_1:51017644-51017663 | Msa0735580:CDS | 25.0% |
| ! | AAGAGATTAACATGCTTTTG+TGG | + | chr5_1:51013072-51013091 | None:intergenic | 30.0% |
| TCACTCTTCAGAATATCAAA+TGG | - | chr5_1:51013151-51013170 | Msa0735580:three_prime_UTR | 30.0% | |
| AACAAGATGATATACTTGGA+CGG | + | chr5_1:51013323-51013342 | None:intergenic | 30.0% | |
| !!! | CACTTTTCTTACTGGTTTTA+TGG | - | chr5_1:51013384-51013403 | Msa0735580:three_prime_UTR | 30.0% |
| TTTAGTGATGACACTCTTTA+TGG | - | chr5_1:51013667-51013686 | Msa0735580:intron | 30.0% | |
| ! | TCATGAGGCATTCATAAAAT+AGG | - | chr5_1:51013768-51013787 | Msa0735580:intron | 30.0% |
| !! | GTATTTTTAAATGGCTACCA+TGG | + | chr5_1:51014067-51014086 | None:intergenic | 30.0% |
| !! | GTGTAGGCAGTATTTTTAAA+TGG | + | chr5_1:51014076-51014095 | None:intergenic | 30.0% |
| AGTAGCAATCTTAGTTATCT+TGG | - | chr5_1:51014188-51014207 | Msa0735580:intron | 30.0% | |
| ! | TTTTCATATCCTCCACAATT+TGG | - | chr5_1:51014240-51014259 | Msa0735580:intron | 30.0% |
| TTTCATATCCTCCACAATTT+GGG | - | chr5_1:51014241-51014260 | Msa0735580:intron | 30.0% | |
| TGTAATGTTATACGTACAGA+TGG | + | chr5_1:51014291-51014310 | None:intergenic | 30.0% | |
| AAAAAAGGCCGTTATCAATT+TGG | + | chr5_1:51014360-51014379 | None:intergenic | 30.0% | |
| ! | ATTTGTTGCTTCTTTCACAT+TGG | - | chr5_1:51014533-51014552 | Msa0735580:CDS | 30.0% |
| AATATTCCAATTTCAAGAGG+TGG | - | chr5_1:51014645-51014664 | Msa0735580:intron | 30.0% | |
| !! | AAAACAATGTACTTTTTGGG+TGG | - | chr5_1:51015173-51015192 | Msa0735580:intron | 30.0% |
| ! | CTAGCTATTTGAAACTTGAA+CGG | - | chr5_1:51015267-51015286 | Msa0735580:intron | 30.0% |
| TATTTGAAAAAATCCGTCTC+CGG | - | chr5_1:51015343-51015362 | Msa0735580:intron | 30.0% | |
| !!! | ATGTTTTATTTTTGTGCCAG+CGG | - | chr5_1:51015685-51015704 | Msa0735580:CDS | 30.0% |
| !! | ATTAACAGAGGGGTATATTT+TGG | + | chr5_1:51015810-51015829 | None:intergenic | 30.0% |
| AATAATTGTCGAACAACTTG+TGG | + | chr5_1:51016268-51016287 | None:intergenic | 30.0% | |
| ! | TTGATGATTTAGTCCAATCT+GGG | - | chr5_1:51016444-51016463 | Msa0735580:intron | 30.0% |
| !!! | TCTCAAGTGTTGCTTATTTT+CGG | + | chr5_1:51016577-51016596 | None:intergenic | 30.0% |
| !!! | TGCCATTTTTAATTACGACT+TGG | - | chr5_1:51016617-51016636 | Msa0735580:intron | 30.0% |
| GATGTGCATATAGAGATTAA+GGG | + | chr5_1:51016962-51016981 | None:intergenic | 30.0% | |
| TGATGTGCATATAGAGATTA+AGG | + | chr5_1:51016963-51016982 | None:intergenic | 30.0% | |
| CAGACATATGCATTGAAAAT+AGG | + | chr5_1:51016993-51017012 | None:intergenic | 30.0% | |
| !!! | TTTTTTCCCTCAGAAAGTTT+TGG | - | chr5_1:51017041-51017060 | Msa0735580:intron | 30.0% |
| ! | AATTGAGCTTTGTGAATAAC+GGG | - | chr5_1:51017380-51017399 | Msa0735580:intron | 30.0% |
| !!! | GCTTCTCTTGTACAATTTTT+TGG | - | chr5_1:51017402-51017421 | Msa0735580:intron | 30.0% |
| TTGAACCCTATATCTTATTG+AGG | - | chr5_1:51017497-51017516 | Msa0735580:intron | 30.0% | |
| ATCCTTCAATGATTCTTAGT+AGG | - | chr5_1:51017704-51017723 | Msa0735580:CDS | 30.0% | |
| AGAGAGAGAAAAGAGAAGAA+TGG | - | chr5_1:51013032-51013051 | Msa0735580:three_prime_UTR | 35.0% | |
| AGAAAAGAGAAGAATGGCAA+TGG | - | chr5_1:51013038-51013057 | Msa0735580:three_prime_UTR | 35.0% | |
| TGCAAGTTCTTCACAATCAA+GGG | + | chr5_1:51013100-51013119 | None:intergenic | 35.0% | |
| TTGCAAGTTCTTCACAATCA+AGG | + | chr5_1:51013101-51013120 | None:intergenic | 35.0% | |
| CTCTTCAGAATATCAAATGG+AGG | - | chr5_1:51013154-51013173 | Msa0735580:three_prime_UTR | 35.0% | |
| GATTGATCAAGTGAGACATA+TGG | - | chr5_1:51013417-51013436 | Msa0735580:three_prime_UTR | 35.0% | |
| TGATCCATTAGTACCAAACA+TGG | - | chr5_1:51013451-51013470 | Msa0735580:exon | 35.0% | |
| CTTCAAGGGACCTTATATAT+TGG | - | chr5_1:51013585-51013604 | Msa0735580:intron | 35.0% | |
| GAGCTTAAATTCAGTAGTGT+AGG | - | chr5_1:51013798-51013817 | Msa0735580:intron | 35.0% | |
| !!! | GATTTTTTTACAACCGTCAC+CGG | + | chr5_1:51014018-51014037 | None:intergenic | 35.0% |
| AACAAACAACCAGATGAAGA+TGG | + | chr5_1:51014098-51014117 | None:intergenic | 35.0% | |
| TACAATTCGGACAAATGTCA+TGG | + | chr5_1:51014136-51014155 | None:intergenic | 35.0% | |
| TTCATATCCTCCACAATTTG+GGG | - | chr5_1:51014242-51014261 | Msa0735580:intron | 35.0% | |
| AAGTAAAGATCCCCAAATTG+TGG | + | chr5_1:51014255-51014274 | None:intergenic | 35.0% | |
| GACCTGGATAAGCATAAAAA+AGG | + | chr5_1:51014375-51014394 | None:intergenic | 35.0% | |
| AAGAAGCAACAAATAGACGA+GGG | + | chr5_1:51014527-51014546 | None:intergenic | 35.0% | |
| AAAGAAGCAACAAATAGACG+AGG | + | chr5_1:51014528-51014547 | None:intergenic | 35.0% | |
| CATTAAAACACAAACCTGCA+GGG | + | chr5_1:51014703-51014722 | None:intergenic | 35.0% | |
| !! | TTGACTTGCACATCATACAT+AGG | - | chr5_1:51014824-51014843 | Msa0735580:intron | 35.0% |
| !!! | CTTATTGAGTTTTAGGGGTA+TGG | - | chr5_1:51014934-51014953 | Msa0735580:intron | 35.0% |
| ! | GATTTGAAATTATGCAGGAG+AGG | - | chr5_1:51015019-51015038 | Msa0735580:intron | 35.0% |
| !!! | ATGCAGGAGAGGTTTTATTT+CGG | - | chr5_1:51015030-51015049 | Msa0735580:intron | 35.0% |
| ATACTCACATTATCAGCATC+AGG | + | chr5_1:51015120-51015139 | None:intergenic | 35.0% | |
| ACTTGAACGGTTATTAGTGT+TGG | - | chr5_1:51015280-51015299 | Msa0735580:intron | 35.0% | |
| ! | ATTCCAAATTAGCCTGAATC+CGG | + | chr5_1:51015365-51015384 | None:intergenic | 35.0% |
| ! | CCACATTTCTGAAAACTCAA+TGG | + | chr5_1:51015396-51015415 | None:intergenic | 35.0% |
| ! | CCATTGAGTTTTCAGAAATG+TGG | - | chr5_1:51015393-51015412 | Msa0735580:intron | 35.0% |
| TTTCAGAAATGTGGTGAAAG+AGG | - | chr5_1:51015402-51015421 | Msa0735580:intron | 35.0% | |
| TGAGATAGTAGAGGATATCA+AGG | - | chr5_1:51015429-51015448 | Msa0735580:intron | 35.0% | |
| ! | AGGAACCTTGGAATCTTTTA+TGG | - | chr5_1:51015716-51015735 | Msa0735580:CDS | 35.0% |
| ! | GGAACCTTGGAATCTTTTAT+GGG | - | chr5_1:51015717-51015736 | Msa0735580:CDS | 35.0% |
| AACACCCATAAAAGATTCCA+AGG | + | chr5_1:51015724-51015743 | None:intergenic | 35.0% | |
| TGGGTGTTTCATTTACTTGT+TGG | - | chr5_1:51015736-51015755 | Msa0735580:CDS | 35.0% | |
| GGGTGTTTCATTTACTTGTT+GGG | - | chr5_1:51015737-51015756 | Msa0735580:CDS | 35.0% | |
| CTAGATAAAAACCAAGAGGT+AGG | + | chr5_1:51015777-51015796 | None:intergenic | 35.0% | |
| !! | CTACCTCTTGGTTTTTATCT+AGG | - | chr5_1:51015775-51015794 | Msa0735580:intron | 35.0% |
| ACACCTAGATAAAAACCAAG+AGG | + | chr5_1:51015781-51015800 | None:intergenic | 35.0% | |
| CATAAGAAATGACTGCTACA+GGG | + | chr5_1:51015909-51015928 | None:intergenic | 35.0% | |
| ACATAAGAAATGACTGCTAC+AGG | + | chr5_1:51015910-51015929 | None:intergenic | 35.0% | |
| CTCAGCAAAAACAAATAGTG+AGG | + | chr5_1:51015942-51015961 | None:intergenic | 35.0% | |
| !!! | GTCCGGTTTTTTATTTGTGA+TGG | - | chr5_1:51015984-51016003 | Msa0735580:intron | 35.0% |
| !!! | TATCCGCTAGTTTTATTGTG+TGG | - | chr5_1:51016089-51016108 | Msa0735580:CDS | 35.0% |
| AAGCCACACAATAAAACTAG+CGG | + | chr5_1:51016095-51016114 | None:intergenic | 35.0% | |
| GTTGTTCGACAATTATTCAG+TGG | - | chr5_1:51016271-51016290 | Msa0735580:CDS | 35.0% | |
| TTCGACAATTATTCAGTGGT+CGG | - | chr5_1:51016275-51016294 | Msa0735580:CDS | 35.0% | |
| !! | AGTTGTCTAATTTTTGGGAG+TGG | - | chr5_1:51016333-51016352 | Msa0735580:CDS | 35.0% |
| !! | GTTGATGATTTAGTCCAATC+TGG | - | chr5_1:51016443-51016462 | Msa0735580:intron | 35.0% |
| TGATGATTTAGTCCAATCTG+GGG | - | chr5_1:51016445-51016464 | Msa0735580:intron | 35.0% | |
| GTTTACCTGACACTCAATTA+GGG | + | chr5_1:51016474-51016493 | None:intergenic | 35.0% | |
| AGTTTACCTGACACTCAATT+AGG | + | chr5_1:51016475-51016494 | None:intergenic | 35.0% | |
| !!! | AAGTGTTGCTTATTTTCGGT+TGG | + | chr5_1:51016573-51016592 | None:intergenic | 35.0% |
| TTGTGTAAAGAAACAGGGTA+AGG | - | chr5_1:51016650-51016669 | Msa0735580:intron | 35.0% | |
| TGCATACAATGATCATATGG+TGG | - | chr5_1:51016674-51016693 | Msa0735580:intron | 35.0% | |
| GCATACAATGATCATATGGT+GGG | - | chr5_1:51016675-51016694 | Msa0735580:intron | 35.0% | |
| !! | GAAGTTGATGAGATTAAGCT+AGG | + | chr5_1:51017160-51017179 | None:intergenic | 35.0% |
| AGAATCTGTGATCCAAAAGT+AGG | + | chr5_1:51017263-51017282 | None:intergenic | 35.0% | |
| GCTAGACTCAATACTTCAAA+AGG | + | chr5_1:51017322-51017341 | None:intergenic | 35.0% | |
| !! | TTTGAAGTATTGAGTCTAGC+AGG | - | chr5_1:51017322-51017341 | Msa0735580:intron | 35.0% |
| !! | TTGAAGTATTGAGTCTAGCA+GGG | - | chr5_1:51017323-51017342 | Msa0735580:intron | 35.0% |
| AACTGAAACACATTTCCTCA+AGG | - | chr5_1:51017681-51017700 | Msa0735580:CDS | 35.0% | |
| TGCCTACTAAGAATCATTGA+AGG | + | chr5_1:51017709-51017728 | None:intergenic | 35.0% | |
| AGAGACTTGAAACAGTTTCA+GGG | + | chr5_1:51017765-51017784 | None:intergenic | 35.0% | |
| AAGGGCAAGAGAAGAAATTG+AGG | + | chr5_1:51013182-51013201 | None:intergenic | 40.0% | |
| AATTTCTTCTCTTGCCCTTG+TGG | - | chr5_1:51013183-51013202 | Msa0735580:three_prime_UTR | 40.0% | |
| TGTGCCATGTTTGGTACTAA+TGG | + | chr5_1:51013458-51013477 | None:intergenic | 40.0% | |
| GTATTGTACTGTGCCATGTT+TGG | + | chr5_1:51013467-51013486 | None:intergenic | 40.0% | |
| GAGTGTCATCACTAAAGACT+TGG | + | chr5_1:51013663-51013682 | None:intergenic | 40.0% | |
| AATGATGCAATGCATGTCAG+TGG | - | chr5_1:51013846-51013865 | Msa0735580:intron | 40.0% | |
| ! | TCATCGACAACACTGATTGT+AGG | + | chr5_1:51013918-51013937 | None:intergenic | 40.0% |
| ACAATCAGTGTTGTCGATGA+TGG | - | chr5_1:51013918-51013937 | Msa0735580:intron | 40.0% | |
| ! | TGATGGATGGCAGAATATTG+AGG | - | chr5_1:51013935-51013954 | Msa0735580:intron | 40.0% |
| TAAAGATCCCCAAATTGTGG+AGG | + | chr5_1:51014252-51014271 | None:intergenic | 40.0% | |
| !!! | GGCCTTTTTTATGCTTATCC+AGG | - | chr5_1:51014370-51014389 | Msa0735580:CDS | 40.0% |
| AGAGCTGAATGATGCCAAAA+AGG | + | chr5_1:51014463-51014482 | None:intergenic | 40.0% | |
| AGTTGTTCAAACACTTGAGC+TGG | + | chr5_1:51014486-51014505 | None:intergenic | 40.0% | |
| AATGATCCAGTTGGGAAGAA+AGG | + | chr5_1:51014564-51014583 | None:intergenic | 40.0% | |
| TTCGCTCAAATGATCCAGTT+GGG | + | chr5_1:51014572-51014591 | None:intergenic | 40.0% | |
| ATTCGCTCAAATGATCCAGT+TGG | + | chr5_1:51014573-51014592 | None:intergenic | 40.0% | |
| AACTGGATCATTTGAGCGAA+TGG | - | chr5_1:51014572-51014591 | Msa0735580:intron | 40.0% | |
| TTTGAGCGAATGGAAGAAGA+AGG | - | chr5_1:51014582-51014601 | Msa0735580:intron | 40.0% | |
| TTGAGCGAATGGAAGAAGAA+GGG | - | chr5_1:51014583-51014602 | Msa0735580:intron | 40.0% | |
| ATTTGACAACATCCGTGCAA+GGG | + | chr5_1:51014628-51014647 | None:intergenic | 40.0% | |
| TATTTGACAACATCCGTGCA+AGG | + | chr5_1:51014629-51014648 | None:intergenic | 40.0% | |
| GCATTAAAACACAAACCTGC+AGG | + | chr5_1:51014704-51014723 | None:intergenic | 40.0% | |
| !! | GTTTTGCCATTGTTTGAGAC+TGG | - | chr5_1:51015060-51015079 | Msa0735580:intron | 40.0% |
| GGAATACCAGTCTCAAACAA+TGG | + | chr5_1:51015069-51015088 | None:intergenic | 40.0% | |
| !!! | GTACTTTTTGGGTGGTTTCT+CGG | - | chr5_1:51015181-51015200 | Msa0735580:intron | 40.0% |
| !!! | TACTTTTTGGGTGGTTTCTC+GGG | - | chr5_1:51015182-51015201 | Msa0735580:intron | 40.0% |
| TGGAGTTGGAATTTGGAAGA+GGG | - | chr5_1:51015224-51015243 | Msa0735580:intron | 40.0% | |
| GTACTATTGCTGTAGCTTCT+GGG | - | chr5_1:51015589-51015608 | Msa0735580:intron | 40.0% | |
| ! | TTCTGGGTGTTTTTCTCTAC+TGG | - | chr5_1:51015605-51015624 | Msa0735580:intron | 40.0% |
| !!! | CTACTGGTTTTTGCTGTTGT+TGG | - | chr5_1:51015621-51015640 | Msa0735580:intron | 40.0% |
| TTTATTGTCTGCCTACCTCT+TGG | - | chr5_1:51015763-51015782 | Msa0735580:intron | 40.0% | |
| CATGATTGGGTTTGTGCTTA+GGG | - | chr5_1:51015863-51015882 | Msa0735580:intron | 40.0% | |
| ! | TGCTGAGTTGCTGTTAATTC+TGG | - | chr5_1:51015955-51015974 | Msa0735580:intron | 40.0% |
| GTTAATTCTGGTAGACTGTC+CGG | - | chr5_1:51015967-51015986 | Msa0735580:intron | 40.0% | |
| ! | TAAGGTGTTCCGCCTATATA+CGG | - | chr5_1:51016026-51016045 | Msa0735580:intron | 40.0% |
| GTCATTGCATTTCCAGATGA+TGG | - | chr5_1:51016227-51016246 | Msa0735580:CDS | 40.0% | |
| AAGGTGACAAGAGGATAGTT+CGG | - | chr5_1:51016381-51016400 | Msa0735580:CDS | 40.0% | |
| GATGATTTAGTCCAATCTGG+GGG | - | chr5_1:51016446-51016465 | Msa0735580:intron | 40.0% | |
| AGCCTCTTGTGTAAAGAAAC+AGG | - | chr5_1:51016644-51016663 | Msa0735580:intron | 40.0% | |
| GCCTCTTGTGTAAAGAAACA+GGG | - | chr5_1:51016645-51016664 | Msa0735580:intron | 40.0% | |
| ! | ACCCTGTTTCTTTACACAAG+AGG | + | chr5_1:51016649-51016668 | None:intergenic | 40.0% |
| GGCTGCATACAATGATCATA+TGG | - | chr5_1:51016671-51016690 | Msa0735580:intron | 40.0% | |
| CTAAAGCTCCTGCATACATA+GGG | + | chr5_1:51016714-51016733 | None:intergenic | 40.0% | |
| ACTAAAGCTCCTGCATACAT+AGG | + | chr5_1:51016715-51016734 | None:intergenic | 40.0% | |
| !!! | AGAAGGCATTTGCCTACTTT+TGG | - | chr5_1:51017248-51017267 | Msa0735580:intron | 40.0% |
| CTAAGCTCACAAGGATATGA+TGG | + | chr5_1:51017443-51017462 | None:intergenic | 40.0% | |
| TTCAATGTGCTAAGCTCACA+AGG | + | chr5_1:51017452-51017471 | None:intergenic | 40.0% | |
| GGTATGTTGAGTGTTAACAC+TGG | - | chr5_1:51017518-51017537 | Msa0735580:intron | 40.0% | |
| GCATGAGATTTCTCATCAAC+AGG | - | chr5_1:51017575-51017594 | Msa0735580:intron | 40.0% | |
| GAATCATTGAAGGATCCTTG+AGG | + | chr5_1:51017699-51017718 | None:intergenic | 40.0% | |
| CAGAGACTTGAAACAGTTTC+AGG | + | chr5_1:51017766-51017785 | None:intergenic | 40.0% | |
| !! | TCAGTGTTGTCGATGATGGA+TGG | - | chr5_1:51013922-51013941 | Msa0735580:intron | 45.0% |
| GGATGGCAGAATATTGAGGA+AGG | - | chr5_1:51013939-51013958 | Msa0735580:intron | 45.0% | |
| GCTGCAATGGCGTGTTTATA+TGG | + | chr5_1:51013976-51013995 | None:intergenic | 45.0% | |
| CAACCAGATGAAGATGGTGT+AGG | + | chr5_1:51014092-51014111 | None:intergenic | 45.0% | |
| ! | TTATCCAGGTCTTTTGCCGA+TGG | - | chr5_1:51014384-51014403 | Msa0735580:CDS | 45.0% |
| ! | TATCCAGGTCTTTTGCCGAT+GGG | - | chr5_1:51014385-51014404 | Msa0735580:CDS | 45.0% |
| AATAACGCAGAAGAGCTCAG+AGG | - | chr5_1:51014426-51014445 | Msa0735580:intron | 45.0% | |
| ! | AGGTCAACACGTTGCCTTTT+TGG | - | chr5_1:51014446-51014465 | Msa0735580:intron | 45.0% |
| ! | GTTTTGCCTTTCTTCCCAAC+TGG | - | chr5_1:51014555-51014574 | Msa0735580:intron | 45.0% |
| TGAGCGAATGGAAGAAGAAG+GGG | - | chr5_1:51014584-51014603 | Msa0735580:intron | 45.0% | |
| ATATGACATTCATGCCCTGC+AGG | - | chr5_1:51014686-51014705 | Msa0735580:intron | 45.0% | |
| !!! | GAGGTTTTATTTCGGAGACG+AGG | - | chr5_1:51015038-51015057 | Msa0735580:intron | 45.0% |
| ! | GTTGTAGCAGACGTTGCTTT+AGG | + | chr5_1:51015095-51015114 | None:intergenic | 45.0% |
| !!! | ACTTTTTGGGTGGTTTCTCG+GGG | - | chr5_1:51015183-51015202 | Msa0735580:intron | 45.0% |
| GTGGAGTTGGAATTTGGAAG+AGG | - | chr5_1:51015223-51015242 | Msa0735580:intron | 45.0% | |
| GGAGTTGGAATTTGGAAGAG+GGG | - | chr5_1:51015225-51015244 | Msa0735580:intron | 45.0% | |
| GAGTTGGAATTTGGAAGAGG+GGG | - | chr5_1:51015226-51015245 | Msa0735580:intron | 45.0% | |
| AGTTGGAATTTGGAAGAGGG+GGG | - | chr5_1:51015227-51015246 | Msa0735580:intron | 45.0% | |
| GTGTTGGAAGAAGAGAGAAG+TGG | - | chr5_1:51015296-51015315 | Msa0735580:intron | 45.0% | |
| GGAAGAAGAGAGAAGTGGTT+TGG | - | chr5_1:51015301-51015320 | Msa0735580:intron | 45.0% | |
| AAAAATCCGTCTCCGGATTC+AGG | - | chr5_1:51015350-51015369 | Msa0735580:intron | 45.0% | |
| ! | AATTAGCCTGAATCCGGAGA+CGG | + | chr5_1:51015359-51015378 | None:intergenic | 45.0% |
| TCTCCGGATTCAGGCTAATT+TGG | - | chr5_1:51015359-51015378 | Msa0735580:intron | 45.0% | |
| CAGAAATGTGGTGAAAGAGG+TGG | - | chr5_1:51015405-51015424 | Msa0735580:intron | 45.0% | |
| AGAGGTGGATGAGATAGTAG+AGG | - | chr5_1:51015420-51015439 | Msa0735580:intron | 45.0% | |
| !! | AGGATATCAAGGTGTTGTCG+TGG | - | chr5_1:51015440-51015459 | Msa0735580:intron | 45.0% |
| !! | AATCCAAGGGAGTGCCTATA+GGG | - | chr5_1:51015520-51015539 | Msa0735580:intron | 45.0% |
| CGTACTATTGCTGTAGCTTC+TGG | - | chr5_1:51015588-51015607 | Msa0735580:intron | 45.0% | |
| !!! | GGTTTTTGCTGTTGTTGGTG+TGG | - | chr5_1:51015626-51015645 | Msa0735580:intron | 45.0% |
| ! | TGTTGGTGTGGCTTCTGTTT+TGG | - | chr5_1:51015638-51015657 | Msa0735580:intron | 45.0% |
| !!! | GTGTGGCTTCTGTTTTGGTT+CGG | - | chr5_1:51015643-51015662 | Msa0735580:intron | 45.0% |
| GCTGAACAGGATTAACAGAG+GGG | + | chr5_1:51015820-51015839 | None:intergenic | 45.0% | |
| CGCTGAACAGGATTAACAGA+GGG | + | chr5_1:51015821-51015840 | None:intergenic | 45.0% | |
| ! | AGGCAAGGGTATGCATGATT+GGG | - | chr5_1:51015850-51015869 | Msa0735580:intron | 45.0% |
| GCATGATTGGGTTTGTGCTT+AGG | - | chr5_1:51015862-51015881 | Msa0735580:intron | 45.0% | |
| TGCTTAGGGAGCAGATTGTT+AGG | - | chr5_1:51015877-51015896 | Msa0735580:intron | 45.0% | |
| TTAGGGAGCAGATTGTTAGG+TGG | - | chr5_1:51015880-51015899 | Msa0735580:intron | 45.0% | |
| ! | CATTTCCAGATGATGGTGCA+TGG | - | chr5_1:51016234-51016253 | Msa0735580:CDS | 45.0% |
| !! | GTCTAATTTTTGGGAGTGGC+AGG | - | chr5_1:51016337-51016356 | Msa0735580:CDS | 45.0% |
| ! | GTATGCACAAAGGTACGTGA+AGG | - | chr5_1:51016362-51016381 | Msa0735580:CDS | 45.0% |
| ! | ATGCAGGAGCTTTAGTGTAC+CGG | - | chr5_1:51016719-51016738 | Msa0735580:intron | 45.0% |
| AAAAATGAAAACGGGCAGCC+CGG | + | chr5_1:51016741-51016760 | None:intergenic | 45.0% | |
| TGGCTGCCAAAACTTTCTGA+GGG | + | chr5_1:51017050-51017069 | None:intergenic | 45.0% | |
| TTGGCTGCCAAAACTTTCTG+AGG | + | chr5_1:51017051-51017070 | None:intergenic | 45.0% | |
| !! | CAGAAAGTTTTGGCAGCCAA+TGG | - | chr5_1:51017051-51017070 | Msa0735580:intron | 45.0% |
| !! | ACTCACTTTTGCTGCACCAT+TGG | + | chr5_1:51017070-51017089 | None:intergenic | 45.0% |
| ! | ATCGCAGCCATGATTGGTTA+GGG | + | chr5_1:51017116-51017135 | None:intergenic | 45.0% |
| ! | AATCGCAGCCATGATTGGTT+AGG | + | chr5_1:51017117-51017136 | None:intergenic | 45.0% |
| CTGCGATTCACTCACAAAGA+TGG | - | chr5_1:51017129-51017148 | Msa0735580:intron | 45.0% | |
| ! | CCAGAGCTTTGACTGTAACT+GGG | + | chr5_1:51017288-51017307 | None:intergenic | 45.0% |
| !! | ATCATAAAAATAATAAATTA+AGG | + | chr5_1:51016201-51016220 | None:intergenic | 5.0% |
| ! | CGACAACACTGATTGTAGGC+AGG | + | chr5_1:51013914-51013933 | None:intergenic | 50.0% |
| AAACACGCCATTGCAGCCTA+TGG | - | chr5_1:51013979-51013998 | Msa0735580:intron | 50.0% | |
| CTATGGAGCTGGCAAATTGC+CGG | - | chr5_1:51013996-51014015 | Msa0735580:intron | 50.0% | |
| CTGCCTACACCATCTTCATC+TGG | - | chr5_1:51014086-51014105 | Msa0735580:intron | 50.0% | |
| AAACCCATCGGCAAAAGACC+TGG | + | chr5_1:51014391-51014410 | None:intergenic | 50.0% | |
| GTTGGGCCACCTCTTGAAAT+TGG | + | chr5_1:51014654-51014673 | None:intergenic | 50.0% | |
| !! | AGCAGACGTTGCTTTAGGAG+AGG | + | chr5_1:51015090-51015109 | None:intergenic | 50.0% |
| GGATGGGTGGAGTTGGAATT+TGG | - | chr5_1:51015217-51015236 | Msa0735580:intron | 50.0% | |
| TCCAACACCAGTCGTAGTAC+AGG | + | chr5_1:51015501-51015520 | None:intergenic | 50.0% | |
| ! | ACGACTGGTGTTGGAATCCA+AGG | - | chr5_1:51015506-51015525 | Msa0735580:intron | 50.0% |
| ! | CGACTGGTGTTGGAATCCAA+GGG | - | chr5_1:51015507-51015526 | Msa0735580:intron | 50.0% |
| !! | GAATCCAAGGGAGTGCCTAT+AGG | - | chr5_1:51015519-51015538 | Msa0735580:intron | 50.0% |
| ! | GAGTGCCTATAGGGTGTCAT+TGG | - | chr5_1:51015529-51015548 | Msa0735580:intron | 50.0% |
| GCTAGCCAATGACACCCTAT+AGG | + | chr5_1:51015537-51015556 | None:intergenic | 50.0% | |
| ! | GTCATTGGCTAGCAAGAGGA+AGG | - | chr5_1:51015544-51015563 | Msa0735580:intron | 50.0% |
| GCTAGCAAGAGGAAGGTTGT+GGG | - | chr5_1:51015551-51015570 | Msa0735580:intron | 50.0% | |
| !! | TTGTGCCAGCGGATTGCTTT+AGG | - | chr5_1:51015696-51015715 | Msa0735580:CDS | 50.0% |
| AGGTTCCTAAAGCAATCCGC+TGG | + | chr5_1:51015704-51015723 | None:intergenic | 50.0% | |
| !! | GCGGATTGCTTTAGGAACCT+TGG | - | chr5_1:51015704-51015723 | Msa0735580:CDS | 50.0% |
| GCGCTGAACAGGATTAACAG+AGG | + | chr5_1:51015822-51015841 | None:intergenic | 50.0% | |
| CTGTTAATCCTGTTCAGCGC+TGG | - | chr5_1:51015822-51015841 | Msa0735580:intron | 50.0% | |
| ! | GAGGCAAGGGTATGCATGAT+TGG | - | chr5_1:51015849-51015868 | Msa0735580:intron | 50.0% |
| CAAAAGCCGCCGTATATAGG+CGG | + | chr5_1:51016038-51016057 | None:intergenic | 50.0% | |
| CACCAAAAGCCGCCGTATAT+AGG | + | chr5_1:51016041-51016060 | None:intergenic | 50.0% | |
| GTGGCAGGTTGTATGCACAA+AGG | - | chr5_1:51016352-51016371 | Msa0735580:CDS | 50.0% | |
| AGGTACGTGAAGGTGACAAG+AGG | - | chr5_1:51016372-51016391 | Msa0735580:CDS | 50.0% | |
| CAAGAGGATAGTTCGGCTCA+AGG | - | chr5_1:51016388-51016407 | Msa0735580:intron | 50.0% | |
| AGGATAGTTCGGCTCAAGGA+AGG | - | chr5_1:51016392-51016411 | Msa0735580:intron | 50.0% | |
| CTCAAGGAAGGTCATGTCTC+TGG | - | chr5_1:51016404-51016423 | Msa0735580:intron | 50.0% | |
| CATACATAGGGTTCGGGAAG+GGG | + | chr5_1:51016702-51016721 | None:intergenic | 50.0% | |
| GCATACATAGGGTTCGGGAA+GGG | + | chr5_1:51016703-51016722 | None:intergenic | 50.0% | |
| TGCATACATAGGGTTCGGGA+AGG | + | chr5_1:51016704-51016723 | None:intergenic | 50.0% | |
| TTCCCGAACCCTATGTATGC+AGG | - | chr5_1:51016703-51016722 | Msa0735580:intron | 50.0% | |
| CTCCTGCATACATAGGGTTC+GGG | + | chr5_1:51016708-51016727 | None:intergenic | 50.0% | |
| GCTCCTGCATACATAGGGTT+CGG | + | chr5_1:51016709-51016728 | None:intergenic | 50.0% | |
| ! | TGCAGGAGCTTTAGTGTACC+GGG | - | chr5_1:51016720-51016739 | Msa0735580:intron | 50.0% |
| GTGAGTGCCTATGTCACACA+TGG | - | chr5_1:51017084-51017103 | Msa0735580:intron | 50.0% | |
| GAACACGCCATGTGTGACAT+AGG | + | chr5_1:51017094-51017113 | None:intergenic | 50.0% | |
| GCGTGTTCCCTAACCAATCA+TGG | - | chr5_1:51017106-51017125 | Msa0735580:intron | 50.0% | |
| GAGTGAATCGCAGCCATGAT+TGG | + | chr5_1:51017122-51017141 | None:intergenic | 50.0% | |
| ACTTGCAGAAGCCTCAGAGA+AGG | - | chr5_1:51017231-51017250 | Msa0735580:intron | 50.0% | |
| GTAGGCAAATGCCTTCTCTG+AGG | + | chr5_1:51017245-51017264 | None:intergenic | 50.0% | |
| CCCAGTTACAGTCAAAGCTC+TGG | - | chr5_1:51017285-51017304 | Msa0735580:intron | 50.0% | |
| ! | GCCAGAGCTTTGACTGTAAC+TGG | + | chr5_1:51017289-51017308 | None:intergenic | 50.0% |
| CGGCAATTTGCCAGCTCCAT+AGG | + | chr5_1:51013998-51014017 | None:intergenic | 55.0% | |
| AGCTGGCAAATTGCCGGTGA+CGG | - | chr5_1:51014002-51014021 | Msa0735580:intron | 55.0% | |
| TCCGCCATGCCATTCTTCCA+TGG | - | chr5_1:51014036-51014055 | Msa0735580:intron | 55.0% | |
| GCCATGGAAGAATGGCATGG+CGG | + | chr5_1:51014040-51014059 | None:intergenic | 55.0% | |
| GCCATGCCATTCTTCCATGG+CGG | - | chr5_1:51014039-51014058 | Msa0735580:intron | 55.0% | |
| ACCGCCATGGAAGAATGGCA+TGG | + | chr5_1:51014043-51014062 | None:intergenic | 55.0% | |
| ATGGCACCGCCATGGAAGAA+TGG | + | chr5_1:51014048-51014067 | None:intergenic | 55.0% | |
| ! | ATTCTTCCATGGCGGTGCCA+TGG | - | chr5_1:51014047-51014066 | Msa0735580:intron | 55.0% |
| CAACTGCCTTCACCCTTGCA+CGG | - | chr5_1:51014613-51014632 | Msa0735580:intron | 55.0% | |
| CAACATCCGTGCAAGGGTGA+AGG | + | chr5_1:51014622-51014641 | None:intergenic | 55.0% | |
| ! | GGAAGAGGGGGGAGTTTTCA+CGG | - | chr5_1:51015238-51015257 | Msa0735580:intron | 55.0% |
| !! | TCAAGGTGTTGTCGTGGCGA+TGG | - | chr5_1:51015446-51015465 | Msa0735580:intron | 55.0% |
| CAGTCGTAGTACAGGCAAGG+TGG | + | chr5_1:51015493-51015512 | None:intergenic | 55.0% | |
| CACCTTGCCTGTACTACGAC+TGG | - | chr5_1:51015491-51015510 | Msa0735580:intron | 55.0% | |
| CACCAGTCGTAGTACAGGCA+AGG | + | chr5_1:51015496-51015515 | None:intergenic | 55.0% | |
| GCCTGTACTACGACTGGTGT+TGG | - | chr5_1:51015497-51015516 | Msa0735580:intron | 55.0% | |
| ACACCCTATAGGCACTCCCT+TGG | + | chr5_1:51015526-51015545 | None:intergenic | 55.0% | |
| !! | GGGTGTCATTGGCTAGCAAG+AGG | - | chr5_1:51015540-51015559 | Msa0735580:intron | 55.0% |
| GGCTAGCAAGAGGAAGGTTG+TGG | - | chr5_1:51015550-51015569 | Msa0735580:intron | 55.0% | |
| AGCAAGAGGAAGGTTGTGGG+AGG | - | chr5_1:51015554-51015573 | Msa0735580:intron | 55.0% | |
| AAGAGGAAGGTTGTGGGAGG+TGG | - | chr5_1:51015557-51015576 | Msa0735580:intron | 55.0% | |
| AGAGGAAGGTTGTGGGAGGT+GGG | - | chr5_1:51015558-51015577 | Msa0735580:intron | 55.0% | |
| !!! | GGCTTCTGTTTTGGTTCGGC+TGG | - | chr5_1:51015647-51015666 | Msa0735580:intron | 55.0% |
| GGTGTTCCGCCTATATACGG+CGG | - | chr5_1:51016029-51016048 | Msa0735580:intron | 55.0% | |
| ! | CGCCTATATACGGCGGCTTT+TGG | - | chr5_1:51016036-51016055 | Msa0735580:intron | 55.0% |
| CGCTTCCATGCACCATCATC+TGG | + | chr5_1:51016242-51016261 | None:intergenic | 55.0% | |
| TCAGTGGTCGGTCTCCCATA+AGG | - | chr5_1:51016287-51016306 | Msa0735580:CDS | 55.0% | |
| ! | CAATTAGGGTGCCCCCAGAT+TGG | + | chr5_1:51016460-51016479 | None:intergenic | 55.0% |
| GGGCACCCTAATTGAGTGTC+AGG | - | chr5_1:51016466-51016485 | Msa0735580:intron | 55.0% | |
| GCCATTGCAGCCTATGGAGC+TGG | - | chr5_1:51013985-51014004 | Msa0735580:intron | 60.0% | |
| GCCAGCTCCATAGGCTGCAA+TGG | + | chr5_1:51013989-51014008 | None:intergenic | 60.0% | |
| GGTGGTTTCTCGGGGTCGTT+GGG | - | chr5_1:51015191-51015210 | Msa0735580:intron | 60.0% | |
| GTGGTTTCTCGGGGTCGTTG+GGG | - | chr5_1:51015192-51015211 | Msa0735580:intron | 60.0% | |
| TGGTTTCTCGGGGTCGTTGG+GGG | - | chr5_1:51015193-51015212 | Msa0735580:intron | 60.0% | |
| GAGGAAGGTTGTGGGAGGTG+GGG | - | chr5_1:51015559-51015578 | Msa0735580:intron | 60.0% | |
| AGGAAGGTTGTGGGAGGTGG+GGG | - | chr5_1:51015560-51015579 | Msa0735580:intron | 60.0% | |
| ! | CCTCACTACCAGCGCTGAAC+AGG | + | chr5_1:51015833-51015852 | None:intergenic | 60.0% |
| !! | CCTGTTCAGCGCTGGTAGTG+AGG | - | chr5_1:51015830-51015849 | Msa0735580:intron | 60.0% |
| !! | TCAGCGCTGGTAGTGAGGCA+AGG | - | chr5_1:51015835-51015854 | Msa0735580:intron | 60.0% |
| !! | CAGCGCTGGTAGTGAGGCAA+GGG | - | chr5_1:51015836-51015855 | Msa0735580:intron | 60.0% |
| TGGCTACCATGGCACCGCCA+TGG | + | chr5_1:51014056-51014075 | None:intergenic | 65.0% | |
| GGGTGGTTTCTCGGGGTCGT+TGG | - | chr5_1:51015190-51015209 | Msa0735580:intron | 65.0% | |
| TTTCTCGGGGTCGTTGGGGG+AGG | - | chr5_1:51015196-51015215 | Msa0735580:intron | 65.0% | |
| TGGGGGAGGATGGGTGGAGT+TGG | - | chr5_1:51015210-51015229 | Msa0735580:intron | 65.0% | |
| TCGGGGTCGTTGGGGGAGGA+TGG | - | chr5_1:51015200-51015219 | Msa0735580:intron | 70.0% | |
| CGGGGTCGTTGGGGGAGGAT+GGG | - | chr5_1:51015201-51015220 | Msa0735580:intron | 70.0% | |
| GGTCGTTGGGGGAGGATGGG+TGG | - | chr5_1:51015204-51015223 | Msa0735580:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 51013000 | 51017794 | 51013000 | ID=Msa0735580;Name=Msa0735580 |
| chr5_1 | mRNA | 51013000 | 51017794 | 51013000 | ID=Msa0735580-mRNA-1;Parent=Msa0735580;Name=Msa0735580-mRNA-1;_AED=0.06;_eAED=0.06;_QI=51|0.8|1|1|1|1|6|460|276 |
| chr5_1 | exon | 51013000 | 51013555 | 51013000 | ID=Msa0735580-mRNA-1:exon:14392;Parent=Msa0735580-mRNA-1 |
| chr5_1 | exon | 51014307 | 51014435 | 51014307 | ID=Msa0735580-mRNA-1:exon:14391;Parent=Msa0735580-mRNA-1 |
| chr5_1 | exon | 51014502 | 51014570 | 51014502 | ID=Msa0735580-mRNA-1:exon:14390;Parent=Msa0735580-mRNA-1 |
| chr5_1 | exon | 51015663 | 51015758 | 51015663 | ID=Msa0735580-mRNA-1:exon:14389;Parent=Msa0735580-mRNA-1 |
| chr5_1 | exon | 51016087 | 51016402 | 51016087 | ID=Msa0735580-mRNA-1:exon:14388;Parent=Msa0735580-mRNA-1 |
| chr5_1 | exon | 51017619 | 51017794 | 51017619 | ID=Msa0735580-mRNA-1:exon:14387;Parent=Msa0735580-mRNA-1 |
| chr5_1 | five_prime_UTR | 51017744 | 51017794 | 51017744 | ID=Msa0735580-mRNA-1:five_prime_utr;Parent=Msa0735580-mRNA-1 |
| chr5_1 | CDS | 51017619 | 51017743 | 51017619 | ID=Msa0735580-mRNA-1:cds;Parent=Msa0735580-mRNA-1 |
| chr5_1 | CDS | 51016087 | 51016402 | 51016087 | ID=Msa0735580-mRNA-1:cds;Parent=Msa0735580-mRNA-1 |
| chr5_1 | CDS | 51015663 | 51015758 | 51015663 | ID=Msa0735580-mRNA-1:cds;Parent=Msa0735580-mRNA-1 |
| chr5_1 | CDS | 51014502 | 51014570 | 51014502 | ID=Msa0735580-mRNA-1:cds;Parent=Msa0735580-mRNA-1 |
| chr5_1 | CDS | 51014307 | 51014435 | 51014307 | ID=Msa0735580-mRNA-1:cds;Parent=Msa0735580-mRNA-1 |
| chr5_1 | CDS | 51013460 | 51013555 | 51013460 | ID=Msa0735580-mRNA-1:cds;Parent=Msa0735580-mRNA-1 |
| chr5_1 | three_prime_UTR | 51013000 | 51013459 | 51013000 | ID=Msa0735580-mRNA-1:three_prime_utr;Parent=Msa0735580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
