Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814620 | XP_003616047.1 | 99.593 | 246 | 1 | 0 | 1 | 246 | 1 | 246 | 1.04e-180 | 510 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814620 | sp|Q680A5|KPRS4_ARATH | 79.508 | 244 | 49 | 1 | 8 | 251 | 25 | 267 | 1.27e-143 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814620 | G7K0V0 | 99.593 | 246 | 1 | 0 | 1 | 246 | 1 | 246 | 0.0 | 510 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0735580 | Msa0814620 | 0.903987 | 1.964559e-79 | -8.615850e-47 |
| Msa0777560 | Msa0814620 | 0.900973 | 4.284234e-78 | -8.615850e-47 |
| Msa0814620 | Msa1292520 | 0.802890 | 4.526096e-49 | -8.615850e-47 |
| Msa0223950 | Msa0814620 | 0.803809 | 2.919331e-49 | -8.615850e-47 |
| Msa0382950 | Msa0814620 | 0.816280 | 5.997403e-52 | -8.615850e-47 |
| Msa0383920 | Msa0814620 | 0.823654 | 1.233214e-53 | -8.615850e-47 |
| Msa0265200 | Msa0814620 | 0.815813 | 7.627432e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814620 | MtrunA17_Chr5g0432811 | 99.593 | 246 | 1 | 0 | 1 | 246 | 1 | 246 | 0.0 | 510 |
| Msa0814620 | MtrunA17_Chr3g0096511 | 98.780 | 246 | 3 | 0 | 1 | 246 | 1 | 246 | 0.0 | 507 |
| Msa0814620 | MtrunA17_Chr5g0412911 | 74.059 | 239 | 61 | 1 | 8 | 246 | 88 | 325 | 3.35e-128 | 370 |
| Msa0814620 | MtrunA17_Chr3g0096491 | 61.491 | 161 | 20 | 4 | 83 | 237 | 4 | 128 | 5.25e-55 | 174 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814620 | AT2G42910.1 | 79.508 | 244 | 49 | 1 | 8 | 251 | 25 | 267 | 1.29e-144 | 409 |
| Msa0814620 | AT1G10700.1 | 72.803 | 239 | 64 | 1 | 8 | 246 | 98 | 335 | 7.32e-128 | 369 |
| Msa0814620 | AT1G10700.2 | 71.503 | 193 | 54 | 1 | 8 | 200 | 98 | 289 | 2.78e-99 | 293 |
Find 75 sgRNAs with CRISPR-Local
Find 344 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGTTATTTATAAATATATT+TGG | 0.186047 | 5_3:+46823297 | None:intergenic |
| GTTGGGCCACCTCTTGAAAT+TGG | 0.235056 | 5_3:+46823057 | None:intergenic |
| AGTTTACCTGACACTCAATT+AGG | 0.236042 | 5_3:+46821212 | None:intergenic |
| GCCAGAGCTTTGACCGTAAC+AGG | 0.261191 | 5_3:+46820399 | None:intergenic |
| AGAAGGCATTTGCCTACTTT+TGG | 0.262156 | 5_3:-46820437 | Msa0814620:CDS |
| AATTGAGCTTTGTGAATAAC+AGG | 0.270837 | 5_3:-46820305 | Msa0814620:three_prime_UTR |
| CTAATGCCCTTCAAATTTGA+AGG | 0.346749 | 5_3:-46820332 | Msa0814620:three_prime_UTR |
| CGCTTCCATGCACCATCATC+TGG | 0.347826 | 5_3:+46821456 | None:intergenic |
| CATTCAAATGTCTTTGTACC+AGG | 0.358967 | 5_3:+46820128 | None:intergenic |
| AACATAGCTCAATAAGATAT+AGG | 0.360762 | 5_3:+46820161 | None:intergenic |
| GTTGTAGCAGACGTTGCTTT+AGG | 0.373616 | 5_3:+46822616 | None:intergenic |
| GTTGATGATTTAGTCCAATC+TGG | 0.374638 | 5_3:-46821241 | Msa0814620:CDS |
| AGAGCTGAATGATGCCAAAA+AGG | 0.389793 | 5_3:+46823248 | None:intergenic |
| GTTTACCTGACACTCAATTA+GGG | 0.394592 | 5_3:+46821213 | None:intergenic |
| ACATAGCTCAATAAGATATA+GGG | 0.399516 | 5_3:+46820162 | None:intergenic |
| TTGCAAGTTCTTCACAATCA+AGG | 0.418746 | 5_3:+46824609 | None:intergenic |
| GTCATTGCATTTCCAGATGA+TGG | 0.424723 | 5_3:-46821468 | Msa0814620:CDS |
| CCCTGTTACGGTCAAAGCTC+TGG | 0.430789 | 5_3:-46820400 | Msa0814620:CDS |
| CACAGATTCTTGCCCTGTTA+CGG | 0.432352 | 5_3:-46820412 | Msa0814620:CDS |
| TTTGAAGTATTGAGTCTAGC+AGG | 0.437700 | 5_3:-46820363 | Msa0814620:exon |
| TCATATATGACTAAACTAGT+TGG | 0.456462 | 5_3:+46823039 | None:intergenic |
| TGCAAGTTCTTCACAATCAA+GGG | 0.457166 | 5_3:+46824610 | None:intergenic |
| AGGCACCCTAATTGAGTGTC+AGG | 0.460843 | 5_3:-46821218 | Msa0814620:intron |
| CTCAAGGAAGGTCATGTCTC+TGG | 0.466819 | 5_3:-46821280 | Msa0814620:CDS |
| ATTTGTTGCTTCTTTCACAT+TGG | 0.469191 | 5_3:-46823175 | Msa0814620:CDS |
| ATACTCACATTATCAGCATC+AGG | 0.471492 | 5_3:+46822591 | None:intergenic |
| AATGATCCAGTTGGGAAGAA+AGG | 0.473072 | 5_3:+46823147 | None:intergenic |
| CAATTAGGGTGCCTCCAGAT+TGG | 0.475408 | 5_3:+46821227 | None:intergenic |
| AGTTGTTCAAACACTTGAGC+TGG | 0.480569 | 5_3:+46823225 | None:intergenic |
| GCTAGACTCAATACTTCAAA+AGG | 0.480610 | 5_3:+46820366 | None:intergenic |
| AATAATTGTCGAACAACTTG+TGG | 0.483377 | 5_3:+46821430 | None:intergenic |
| CATATATGACTAAACTAGTT+GGG | 0.489811 | 5_3:+46823040 | None:intergenic |
| ATATGACATTCATGCCCTGC+AGG | 0.491592 | 5_3:-46823022 | Msa0814620:intron |
| TCACTCTTCAGAATATCAAA+TGG | 0.496186 | 5_3:-46824556 | Msa0814620:CDS |
| AACTGGATCATTTGAGCGAA+TGG | 0.500509 | 5_3:-46823136 | Msa0814620:CDS |
| TCAATACTTCAAAAGGAGCT+TGG | 0.505139 | 5_3:+46820373 | None:intergenic |
| AGAGAGAGAGAAAAGAAGAA+TGG | 0.506451 | 5_3:-46824675 | Msa0814620:exon |
| TTCGCTCAAATGATCCAGTT+GGG | 0.520965 | 5_3:+46823139 | None:intergenic |
| AAGGTGACAAGAGGATAGTT+CGG | 0.530143 | 5_3:-46821303 | Msa0814620:CDS |
| AGAGAAAAGAAGAATGGCAA+TGG | 0.531717 | 5_3:-46824669 | Msa0814620:exon |
| TTTGAGCGAATGGAAGAAGA+AGG | 0.532177 | 5_3:-46823126 | Msa0814620:CDS |
| AATATTCCAATTTCAAGAGG+TGG | 0.547449 | 5_3:-46823063 | Msa0814620:CDS |
| TAATAGTTGAAAGGATAAGA+TGG | 0.547872 | 5_3:+46820245 | None:intergenic |
| ATTCGCTCAAATGATCCAGT+TGG | 0.550408 | 5_3:+46823138 | None:intergenic |
| TCAAATATTCCAATTTCAAG+AGG | 0.551790 | 5_3:-46823066 | Msa0814620:CDS |
| AGAATCTGTGATCCAAAAGT+AGG | 0.570262 | 5_3:+46820425 | None:intergenic |
| CAACATCCGTGCAAGGGTGA+AGG | 0.572743 | 5_3:+46823089 | None:intergenic |
| AGGATAGTTCGGCTCAAGGA+AGG | 0.572954 | 5_3:-46821292 | Msa0814620:CDS |
| AAATATATTTGGAAACCCAT+CGG | 0.573432 | 5_3:+46823308 | None:intergenic |
| CAACTGCCTTCACCCTTGCA+CGG | 0.575482 | 5_3:-46823095 | Msa0814620:CDS |
| TTGAAGTATTGAGTCTAGCA+GGG | 0.577295 | 5_3:-46820362 | Msa0814620:exon |
| TTGAGCGAATGGAAGAAGAA+GGG | 0.584772 | 5_3:-46823125 | Msa0814620:CDS |
| CAAGAGGATAGTTCGGCTCA+AGG | 0.585535 | 5_3:-46821296 | Msa0814620:CDS |
| TATTTGACAACATCCGTGCA+AGG | 0.586552 | 5_3:+46823082 | None:intergenic |
| CATTTCCAGATGATGGTGCA+TGG | 0.590118 | 5_3:-46821461 | Msa0814620:CDS |
| AGCAGACGTTGCTTTAGGAG+AGG | 0.593619 | 5_3:+46822621 | None:intergenic |
| GTTGTTCGACAATTATTCAG+TGG | 0.594555 | 5_3:-46821424 | Msa0814620:intron |
| GGAATACCAGTCTCAAACAA+TGG | 0.599758 | 5_3:+46822642 | None:intergenic |
| CCAGAGCTTTGACCGTAACA+GGG | 0.607218 | 5_3:+46820400 | None:intergenic |
| ATTCAAATGTCTTTGTACCA+GGG | 0.610614 | 5_3:+46820129 | None:intergenic |
| TGAGCGAATGGAAGAAGAAG+GGG | 0.613969 | 5_3:-46823124 | Msa0814620:CDS |
| CATTAAAACACAAACCTGCA+GGG | 0.622993 | 5_3:+46823008 | None:intergenic |
| ATTGAGCTTTGTGAATAACA+GGG | 0.628914 | 5_3:-46820304 | Msa0814620:three_prime_UTR |
| ACTTGCAGAAGCCTCAGAGA+AGG | 0.630105 | 5_3:-46820454 | Msa0814620:intron |
| ATTTGACAACATCCGTGCAA+GGG | 0.634805 | 5_3:+46823083 | None:intergenic |
| AGGTACGTGAAGGTGACAAG+AGG | 0.654440 | 5_3:-46821312 | Msa0814620:CDS |
| GATGATTTAGTCCAATCTGG+AGG | 0.671108 | 5_3:-46821238 | Msa0814620:CDS |
| GTATGCACAAAGGTACGTGA+AGG | 0.671287 | 5_3:-46821322 | Msa0814620:CDS |
| CTCTTCAGAATATCAAATGG+AGG | 0.672816 | 5_3:-46824553 | Msa0814620:intron |
| GTAGGCAAATGCCTTCTCTG+AGG | 0.680450 | 5_3:+46820443 | None:intergenic |
| AAAGAAGCAACAAATAGACG+AGG | 0.695963 | 5_3:+46823183 | None:intergenic |
| GTGGCAGGTTGTATGCACAA+AGG | 0.717387 | 5_3:-46821332 | Msa0814620:intron |
| AAGAAGCAACAAATAGACGA+GGG | 0.724453 | 5_3:+46823184 | None:intergenic |
| GCTATGTTGAGTGTTAACCC+TGG | 0.744420 | 5_3:-46820146 | Msa0814620:three_prime_UTR |
| AATAACGCAGAAGAGCTCAG+AGG | 0.761164 | 5_3:-46823282 | Msa0814620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATATTTTTATACATGTT+TGG | - | chr5_3:46820331-46820350 | Msa0814620:three_prime_UTR | 10.0% |
| !!! | ATTGTTTTAAATTTTAAGAA+AGG | + | chr5_3:46822280-46822299 | None:intergenic | 10.0% |
| !! | AGGAAAAAAAAAAAAAAAAA+AGG | + | chr5_3:46823198-46823217 | None:intergenic | 10.0% |
| !!! | AATTTATTATTTTTATGATC+AGG | - | chr5_3:46823334-46823353 | Msa0814620:intron | 10.0% |
| !! | TAAATAGAATGAAAATAAAA+TGG | - | chr5_3:46824016-46824035 | Msa0814620:intron | 10.0% |
| !!! | TTTTTTATTCTTTAACTGTT+TGG | + | chr5_3:46820640-46820659 | None:intergenic | 15.0% |
| !! | GCGTTATTTATAAATATATT+TGG | + | chr5_3:46821533-46821552 | None:intergenic | 15.0% |
| !!! | ATTTAAAACAATGTACTTTT+TGG | - | chr5_3:46822288-46822307 | Msa0814620:intron | 15.0% |
| !!! | TTTAAAACAATGTACTTTTT+GGG | - | chr5_3:46822289-46822308 | Msa0814620:intron | 15.0% |
| !!! | TTTATAGTTGTCTAATTTTT+GGG | - | chr5_3:46823471-46823490 | Msa0814620:intron | 15.0% |
| !! | TTGTAATTAAAAATGAAAAC+GGG | + | chr5_3:46823892-46823911 | None:intergenic | 15.0% |
| !! | CTTGTAATTAAAAATGAAAA+CGG | + | chr5_3:46823893-46823912 | None:intergenic | 15.0% |
| !!! | AAATATAATCTTTTCCACAA+GGG | + | chr5_3:46820320-46820339 | None:intergenic | 20.0% |
| !!! | AAAATATAATCTTTTCCACA+AGG | + | chr5_3:46820321-46820340 | None:intergenic | 20.0% |
| !!! | TGACTTGTTATTATTAGATA+TGG | - | chr5_3:46820390-46820409 | Msa0814620:CDS | 20.0% |
| !!! | TTTTCTAAAATAGTTCTTCA+AGG | - | chr5_3:46820692-46820711 | Msa0814620:intron | 20.0% |
| !!! | TTTCTAAAATAGTTCTTCAA+GGG | - | chr5_3:46820693-46820712 | Msa0814620:intron | 20.0% |
| !! | TTTATCACAACCAATATATA+AGG | + | chr5_3:46820720-46820739 | None:intergenic | 20.0% |
| !! | AAAATCATGAGAATACAATT+CGG | + | chr5_3:46821271-46821290 | None:intergenic | 20.0% |
| !! | AATGACATAACTTAAGAAAT+TGG | + | chr5_3:46821341-46821360 | None:intergenic | 20.0% |
| !!! | TAGAAACTTATTGAGTTTTA+GGG | - | chr5_3:46822047-46822066 | Msa0814620:intron | 20.0% |
| !!! | TTAATGATTTGAAATTATGC+AGG | - | chr5_3:46822133-46822152 | Msa0814620:intron | 20.0% |
| !!! | TTGAGAGTATTTGAAAAAAT+CGG | - | chr5_3:46822455-46822474 | Msa0814620:intron | 20.0% |
| !! | AACCATCACAAATAAAAAAT+CGG | + | chr5_3:46823118-46823137 | None:intergenic | 20.0% |
| !!! | TTTTTTATTTGTGATGGTTT+TGG | - | chr5_3:46823119-46823138 | Msa0814620:CDS | 20.0% |
| !!! | TTTTTATTTGTGATGGTTTT+GGG | - | chr5_3:46823120-46823139 | Msa0814620:CDS | 20.0% |
| !! | TTAAATACATAGATCCTTAT+GGG | + | chr5_3:46823436-46823455 | None:intergenic | 20.0% |
| !! | ATTAAATACATAGATCCTTA+TGG | + | chr5_3:46823437-46823456 | None:intergenic | 20.0% |
| !!! | GTTTATAGTTGTCTAATTTT+TGG | - | chr5_3:46823470-46823489 | Msa0814620:intron | 20.0% |
| !!! | TAATTACAAGATTTTTGCAT+TGG | - | chr5_3:46823903-46823922 | Msa0814620:intron | 20.0% |
| !!! | GAATTTTTTTTCACTGATAA+CGG | - | chr5_3:46823975-46823994 | Msa0814620:intron | 20.0% |
| !! | GGTAATTGATTAATTAAAAG+TGG | - | chr5_3:46824037-46824056 | Msa0814620:intron | 20.0% |
| ! | CTAATAATAACAAGTCAACT+AGG | + | chr5_3:46820387-46820406 | None:intergenic | 25.0% |
| ! | ATACAACAAGATGATATACT+TGG | + | chr5_3:46820447-46820466 | None:intergenic | 25.0% |
| ! | TATATTTATGTTACAGCTTG+TGG | + | chr5_3:46820471-46820490 | None:intergenic | 25.0% |
| !! | ATTAAGTACACTTTTCTTAC+TGG | - | chr5_3:46820496-46820515 | Msa0814620:intron | 25.0% |
| ! | ATTTGCAACATGCAATATAA+AGG | - | chr5_3:46820842-46820861 | Msa0814620:intron | 25.0% |
| !! | ACACTGCTTTAAATAATCAT+AGG | - | chr5_3:46820994-46821013 | Msa0814620:intron | 25.0% |
| ! | AAATAATCATAGGATTTGCA+AGG | - | chr5_3:46821004-46821023 | Msa0814620:intron | 25.0% |
| !! | GTGTTTATATGGAAGATTTT+AGG | + | chr5_3:46821087-46821106 | None:intergenic | 25.0% |
| ! | TGTAATGTTATATGTACAGA+TGG | + | chr5_3:46821413-46821432 | None:intergenic | 25.0% |
| !! | GTTTTTGACCAAATTGATAA+CGG | - | chr5_3:46821467-46821486 | Msa0814620:CDS | 25.0% |
| ! | AAATATATTTGGAAACCCAT+CGG | + | chr5_3:46821522-46821541 | None:intergenic | 25.0% |
| ! | TCAAATATTCCAATTTCAAG+AGG | - | chr5_3:46821761-46821780 | Msa0814620:intron | 25.0% |
| ! | CATATATGACTAAACTAGTT+GGG | + | chr5_3:46821790-46821809 | None:intergenic | 25.0% |
| ! | TCATATATGACTAAACTAGT+TGG | + | chr5_3:46821791-46821810 | None:intergenic | 25.0% |
| !!! | TTGTGTTTTAATGCATTCAA+AGG | - | chr5_3:46821829-46821848 | Msa0814620:intron | 25.0% |
| ! | ATATTCAATAGCAATTCATG+AGG | + | chr5_3:46821901-46821920 | None:intergenic | 25.0% |
| !! | GTAGAAACTTATTGAGTTTT+AGG | - | chr5_3:46822046-46822065 | Msa0814620:intron | 25.0% |
| !!! | AGAAACTTATTGAGTTTTAG+GGG | - | chr5_3:46822048-46822067 | Msa0814620:intron | 25.0% |
| !!! | TTTGGGTTGTTTTGATTTTA+AGG | - | chr5_3:46823137-46823156 | Msa0814620:CDS | 25.0% |
| ! | AAATAATAAATTAAGGCTGC+AGG | + | chr5_3:46823326-46823345 | None:intergenic | 25.0% |
| !!! | TACCATTTTTAATTACGACT+TGG | - | chr5_3:46823760-46823779 | Msa0814620:intron | 25.0% |
| ! | TTCCAAGTCGTAATTAAAAA+TGG | + | chr5_3:46823765-46823784 | None:intergenic | 25.0% |
| ! | AATATTTGTACAAGAAACGT+TGG | - | chr5_3:46823945-46823964 | Msa0814620:intron | 25.0% |
| !! | TTTTTGCCTTCAAATTTGAA+GGG | + | chr5_3:46824504-46824523 | None:intergenic | 25.0% |
| !! | ATTTTTGCCTTCAAATTTGA+AGG | + | chr5_3:46824505-46824524 | None:intergenic | 25.0% |
| ! | TAATAGTTGAAAGGATAAGA+TGG | + | chr5_3:46824585-46824604 | None:intergenic | 25.0% |
| ! | AAATGCACATAATAGTTGAA+AGG | + | chr5_3:46824594-46824613 | None:intergenic | 25.0% |
| ! | ACATAGCTCAATAAGATATA+GGG | + | chr5_3:46824668-46824687 | None:intergenic | 25.0% |
| ! | AACATAGCTCAATAAGATAT+AGG | + | chr5_3:46824669-46824688 | None:intergenic | 25.0% |
| ! | AAGAGATTAACATGCTTTTG+TGG | + | chr5_3:46820192-46820211 | None:intergenic | 30.0% |
| TCACTCTTCAGAATATCAAA+TGG | - | chr5_3:46820271-46820290 | Msa0814620:three_prime_UTR | 30.0% | |
| AACAAGATGATATACTTGGA+CGG | + | chr5_3:46820443-46820462 | None:intergenic | 30.0% | |
| !!! | CACTTTTCTTACTGGTTTTA+TGG | - | chr5_3:46820504-46820523 | Msa0814620:intron | 30.0% |
| TTTAGTGATGACACTCTTTA+TGG | - | chr5_3:46820789-46820808 | Msa0814620:intron | 30.0% | |
| TAGATTCAAACTAAATCACG+AGG | - | chr5_3:46820875-46820894 | Msa0814620:intron | 30.0% | |
| !! | GTATTTTTAAATGGCTACCA+TGG | + | chr5_3:46821189-46821208 | None:intergenic | 30.0% |
| !! | GTGTAGGCAGTATTTTTAAA+TGG | + | chr5_3:46821198-46821217 | None:intergenic | 30.0% |
| AGTAGCAATCTTAGTTATCT+TGG | - | chr5_3:46821310-46821329 | Msa0814620:CDS | 30.0% | |
| AAAAAAGGCCGTTATCAATT+TGG | + | chr5_3:46821478-46821497 | None:intergenic | 30.0% | |
| ACCTGGATAAGCATAAAAAA+AGG | + | chr5_3:46821493-46821512 | None:intergenic | 30.0% | |
| ! | ATTTGTTGCTTCTTTCACAT+TGG | - | chr5_3:46821652-46821671 | Msa0814620:intron | 30.0% |
| AATATTCCAATTTCAAGAGG+TGG | - | chr5_3:46821764-46821783 | Msa0814620:intron | 30.0% | |
| !! | AAAACAATGTACTTTTTGGG+TGG | - | chr5_3:46822292-46822311 | Msa0814620:intron | 30.0% |
| ! | CTAGCTATTTGAAACTTGAA+CGG | - | chr5_3:46822386-46822405 | Msa0814620:intron | 30.0% |
| TATTTGAAAAAATCGGTCTC+CGG | - | chr5_3:46822462-46822481 | Msa0814620:intron | 30.0% | |
| TCAGGCTAATTTGGTTAATT+TGG | - | chr5_3:46822487-46822506 | Msa0814620:intron | 30.0% | |
| !!! | ATGTTTTATTTTTGTGCCAG+CGG | - | chr5_3:46822814-46822833 | Msa0814620:intron | 30.0% |
| !! | ATTAACAGAGGGGTATATTT+TGG | + | chr5_3:46822939-46822958 | None:intergenic | 30.0% |
| !!! | GTCCGATTTTTTATTTGTGA+TGG | - | chr5_3:46823113-46823132 | Msa0814620:CDS | 30.0% |
| AATAATTGTCGAACAACTTG+TGG | + | chr5_3:46823400-46823419 | None:intergenic | 30.0% | |
| !!! | TCTCAAGTGTTGCTTATTTT+CGG | + | chr5_3:46823720-46823739 | None:intergenic | 30.0% |
| GATGTGCATATAGAGATTAA+GGG | + | chr5_3:46824104-46824123 | None:intergenic | 30.0% | |
| TGATGTGCATATAGAGATTA+AGG | + | chr5_3:46824105-46824124 | None:intergenic | 30.0% | |
| !!! | TTTTTTCCCTCAGAAAGTTT+TGG | - | chr5_3:46824183-46824202 | Msa0814620:intron | 30.0% |
| !! | GAAGTTGATGAGATTAAGTT+AGG | + | chr5_3:46824302-46824321 | None:intergenic | 30.0% |
| ! | AATTGAGCTTTGTGAATAAC+AGG | - | chr5_3:46824522-46824541 | Msa0814620:intron | 30.0% |
| ! | ATTGAGCTTTGTGAATAACA+GGG | - | chr5_3:46824523-46824542 | Msa0814620:intron | 30.0% |
| !!! | GGTTCTCTTGTACAATTTTT+TGG | - | chr5_3:46824544-46824563 | Msa0814620:intron | 30.0% |
| ATTCAAATGTCTTTGTACCA+GGG | + | chr5_3:46824701-46824720 | None:intergenic | 30.0% | |
| AGAGAGAGAGAAAAGAAGAA+TGG | - | chr5_3:46820152-46820171 | Msa0814620:three_prime_UTR | 35.0% | |
| AGAGAAAAGAAGAATGGCAA+TGG | - | chr5_3:46820158-46820177 | Msa0814620:three_prime_UTR | 35.0% | |
| TGCAAGTTCTTCACAATCAA+GGG | + | chr5_3:46820220-46820239 | None:intergenic | 35.0% | |
| TTGCAAGTTCTTCACAATCA+AGG | + | chr5_3:46820221-46820240 | None:intergenic | 35.0% | |
| CTCTTCAGAATATCAAATGG+AGG | - | chr5_3:46820274-46820293 | Msa0814620:three_prime_UTR | 35.0% | |
| GATTGATCAAGTGAGACATA+TGG | - | chr5_3:46820537-46820556 | Msa0814620:intron | 35.0% | |
| TGATCCATTAGTACCAAACA+TGG | - | chr5_3:46820571-46820590 | Msa0814620:intron | 35.0% | |
| CTTCAAGGGACCTTATATAT+TGG | - | chr5_3:46820707-46820726 | Msa0814620:intron | 35.0% | |
| ! | TCACGAGGCATTCATAAAAT+AGG | - | chr5_3:46820890-46820909 | Msa0814620:intron | 35.0% |
| GAGCTTAAATTCAGTAGTGT+AGG | - | chr5_3:46820920-46820939 | Msa0814620:intron | 35.0% | |
| !!! | GATTTTTTTACAACCGTCAC+CGG | + | chr5_3:46821140-46821159 | None:intergenic | 35.0% |
| AACAAACAACCAGATGAAGA+TGG | + | chr5_3:46821220-46821239 | None:intergenic | 35.0% | |
| TACAATTCGGACAAATGTCA+TGG | + | chr5_3:46821258-46821277 | None:intergenic | 35.0% | |
| ! | TTTTCATATCCTCCACAGTT+TGG | - | chr5_3:46821362-46821381 | Msa0814620:intron | 35.0% |
| TTTCATATCCTCCACAGTTT+GGG | - | chr5_3:46821363-46821382 | Msa0814620:intron | 35.0% | |
| !!! | GCCTTTTTTTATGCTTATCC+AGG | - | chr5_3:46821489-46821508 | Msa0814620:intron | 35.0% |
| AAGAAGCAACAAATAGACGA+GGG | + | chr5_3:46821646-46821665 | None:intergenic | 35.0% | |
| AAAGAAGCAACAAATAGACG+AGG | + | chr5_3:46821647-46821666 | None:intergenic | 35.0% | |
| CATTAAAACACAAACCTGCA+GGG | + | chr5_3:46821822-46821841 | None:intergenic | 35.0% | |
| !! | TTGACTTGCACATCATACAT+AGG | - | chr5_3:46821943-46821962 | Msa0814620:intron | 35.0% |
| !!! | CTTATTGAGTTTTAGGGGTA+TGG | - | chr5_3:46822053-46822072 | Msa0814620:intron | 35.0% |
| ! | GATTTGAAATTATGCAGGAG+AGG | - | chr5_3:46822138-46822157 | Msa0814620:intron | 35.0% |
| !!! | ATGCAGGAGAGGTTTTATTT+CGG | - | chr5_3:46822149-46822168 | Msa0814620:intron | 35.0% |
| ATACTCACATTATCAGCATC+AGG | + | chr5_3:46822239-46822258 | None:intergenic | 35.0% | |
| ACTTGAACGGTTATTAGTGT+TGG | - | chr5_3:46822399-46822418 | Msa0814620:intron | 35.0% | |
| ! | TAACCAAATTAGCCTGAATC+CGG | + | chr5_3:46822484-46822503 | None:intergenic | 35.0% |
| ! | CCACATTTCTGAAAACTCAA+TGG | + | chr5_3:46822524-46822543 | None:intergenic | 35.0% |
| ! | CCATTGAGTTTTCAGAAATG+TGG | - | chr5_3:46822521-46822540 | Msa0814620:intron | 35.0% |
| TTTCAGAAATGTGGTGAAAG+AGG | - | chr5_3:46822530-46822549 | Msa0814620:intron | 35.0% | |
| TGAGATAGTAGAGGATATCA+AGG | - | chr5_3:46822557-46822576 | Msa0814620:intron | 35.0% | |
| !!! | CTACTGGTTTTTGTTGTTGT+TGG | - | chr5_3:46822750-46822769 | Msa0814620:intron | 35.0% |
| AACACCCATAAAAGATTCCA+AGG | + | chr5_3:46822853-46822872 | None:intergenic | 35.0% | |
| TGGGTGTTTCATTTACTTGT+TGG | - | chr5_3:46822865-46822884 | Msa0814620:intron | 35.0% | |
| GGGTGTTTCATTTACTTGTT+GGG | - | chr5_3:46822866-46822885 | Msa0814620:intron | 35.0% | |
| CTAGATAAAAACCAAGAGGT+AGG | + | chr5_3:46822906-46822925 | None:intergenic | 35.0% | |
| !! | CTACCTCTTGGTTTTTATCT+AGG | - | chr5_3:46822904-46822923 | Msa0814620:intron | 35.0% |
| ACACCTAGATAAAAACCAAG+AGG | + | chr5_3:46822910-46822929 | None:intergenic | 35.0% | |
| CATAAGAAATGACTGCTACA+GGG | + | chr5_3:46823038-46823057 | None:intergenic | 35.0% | |
| ACATAAGAAATGACTGCTAC+AGG | + | chr5_3:46823039-46823058 | None:intergenic | 35.0% | |
| CTCAGCAAAAACAAATAGTG+AGG | + | chr5_3:46823071-46823090 | None:intergenic | 35.0% | |
| ! | ACACAATAAAACTAGCGGAT+AGG | + | chr5_3:46823218-46823237 | None:intergenic | 35.0% |
| !!! | TATCCGCTAGTTTTATTGTG+TGG | - | chr5_3:46823217-46823236 | Msa0814620:CDS | 35.0% |
| AAGCCACACAATAAAACTAG+CGG | + | chr5_3:46823223-46823242 | None:intergenic | 35.0% | |
| GTTGTTCGACAATTATTCAG+TGG | - | chr5_3:46823403-46823422 | Msa0814620:intron | 35.0% | |
| TTCGACAATTATTCAGTGGT+CGG | - | chr5_3:46823407-46823426 | Msa0814620:intron | 35.0% | |
| !! | AGTTGTCTAATTTTTGGGAG+TGG | - | chr5_3:46823476-46823495 | Msa0814620:intron | 35.0% |
| !! | GTTGATGATTTAGTCCAATC+TGG | - | chr5_3:46823586-46823605 | Msa0814620:intron | 35.0% |
| GTTTACCTGACACTCAATTA+GGG | + | chr5_3:46823617-46823636 | None:intergenic | 35.0% | |
| AGTTTACCTGACACTCAATT+AGG | + | chr5_3:46823618-46823637 | None:intergenic | 35.0% | |
| !!! | AAGTGTTGCTTATTTTCGGT+TGG | + | chr5_3:46823716-46823735 | None:intergenic | 35.0% |
| TTGTGTAAAGAAACAGGGTA+AGG | - | chr5_3:46823793-46823812 | Msa0814620:intron | 35.0% | |
| CAGACACATGCATTGAAAAT+AGG | + | chr5_3:46824135-46824154 | None:intergenic | 35.0% | |
| AGAATCTGTGATCCAAAAGT+AGG | + | chr5_3:46824405-46824424 | None:intergenic | 35.0% | |
| TCAATACTTCAAAAGGAGCT+TGG | + | chr5_3:46824457-46824476 | None:intergenic | 35.0% | |
| GCTAGACTCAATACTTCAAA+AGG | + | chr5_3:46824464-46824483 | None:intergenic | 35.0% | |
| !! | TTTGAAGTATTGAGTCTAGC+AGG | - | chr5_3:46824464-46824483 | Msa0814620:intron | 35.0% |
| !! | TTGAAGTATTGAGTCTAGCA+GGG | - | chr5_3:46824465-46824484 | Msa0814620:intron | 35.0% |
| CTAATGCCCTTCAAATTTGA+AGG | - | chr5_3:46824495-46824514 | Msa0814620:intron | 35.0% | |
| CATTCAAATGTCTTTGTACC+AGG | + | chr5_3:46824702-46824721 | None:intergenic | 35.0% | |
| AAGGGCAAGAGAAGAAATTG+AGG | + | chr5_3:46820302-46820321 | None:intergenic | 40.0% | |
| AATTTCTTCTCTTGCCCTTG+TGG | - | chr5_3:46820303-46820322 | Msa0814620:three_prime_UTR | 40.0% | |
| TGTGCCATGTTTGGTACTAA+TGG | + | chr5_3:46820578-46820597 | None:intergenic | 40.0% | |
| GTATTGTACTGTGCCATGTT+TGG | + | chr5_3:46820587-46820606 | None:intergenic | 40.0% | |
| GAGTGTCATCACTAAAGACT+TGG | + | chr5_3:46820785-46820804 | None:intergenic | 40.0% | |
| AAATTCAGTAGTGTAGGAGC+TGG | - | chr5_3:46820926-46820945 | Msa0814620:intron | 40.0% | |
| AATGATGCAATGCATGTCAG+TGG | - | chr5_3:46820968-46820987 | Msa0814620:intron | 40.0% | |
| ! | TCATCGACAACACTGATTGT+AGG | + | chr5_3:46821040-46821059 | None:intergenic | 40.0% |
| ACAATCAGTGTTGTCGATGA+TGG | - | chr5_3:46821040-46821059 | Msa0814620:intron | 40.0% | |
| ! | TGATGGATGGCAGAATATTG+AGG | - | chr5_3:46821057-46821076 | Msa0814620:intron | 40.0% |
| TTCATATCCTCCACAGTTTG+GGG | - | chr5_3:46821364-46821383 | Msa0814620:intron | 40.0% | |
| AAGTAAAGATCCCCAAACTG+TGG | + | chr5_3:46821377-46821396 | None:intergenic | 40.0% | |
| AGAGCTGAATGATGCCAAAA+AGG | + | chr5_3:46821582-46821601 | None:intergenic | 40.0% | |
| AGTTGTTCAAACACTTGAGC+TGG | + | chr5_3:46821605-46821624 | None:intergenic | 40.0% | |
| AATGATCCAGTTGGGAAGAA+AGG | + | chr5_3:46821683-46821702 | None:intergenic | 40.0% | |
| TTCGCTCAAATGATCCAGTT+GGG | + | chr5_3:46821691-46821710 | None:intergenic | 40.0% | |
| ATTCGCTCAAATGATCCAGT+TGG | + | chr5_3:46821692-46821711 | None:intergenic | 40.0% | |
| AACTGGATCATTTGAGCGAA+TGG | - | chr5_3:46821691-46821710 | Msa0814620:intron | 40.0% | |
| TTTGAGCGAATGGAAGAAGA+AGG | - | chr5_3:46821701-46821720 | Msa0814620:intron | 40.0% | |
| TTGAGCGAATGGAAGAAGAA+GGG | - | chr5_3:46821702-46821721 | Msa0814620:intron | 40.0% | |
| ATTTGACAACATCCGTGCAA+GGG | + | chr5_3:46821747-46821766 | None:intergenic | 40.0% | |
| TATTTGACAACATCCGTGCA+AGG | + | chr5_3:46821748-46821767 | None:intergenic | 40.0% | |
| GCATTAAAACACAAACCTGC+AGG | + | chr5_3:46821823-46821842 | None:intergenic | 40.0% | |
| !! | GTTTTGCCATTGTTTGAGAC+TGG | - | chr5_3:46822179-46822198 | Msa0814620:intron | 40.0% |
| GGAATACCAGTCTCAAACAA+TGG | + | chr5_3:46822188-46822207 | None:intergenic | 40.0% | |
| !!! | GTACTTTTTGGGTGGTTTCT+CGG | - | chr5_3:46822300-46822319 | Msa0814620:intron | 40.0% |
| !!! | TACTTTTTGGGTGGTTTCTC+GGG | - | chr5_3:46822301-46822320 | Msa0814620:intron | 40.0% |
| TGGAGTTGGAATTTGGAAGA+GGG | - | chr5_3:46822343-46822362 | Msa0814620:intron | 40.0% | |
| GTACTATTGCTGTAGCTTCT+GGG | - | chr5_3:46822718-46822737 | Msa0814620:intron | 40.0% | |
| !!! | GGTTTTTGTTGTTGTTGGTG+TGG | - | chr5_3:46822755-46822774 | Msa0814620:intron | 40.0% |
| ! | AGGAGCCTTGGAATCTTTTA+TGG | - | chr5_3:46822845-46822864 | Msa0814620:intron | 40.0% |
| ! | GGAGCCTTGGAATCTTTTAT+GGG | - | chr5_3:46822846-46822865 | Msa0814620:intron | 40.0% |
| TTTATTGTCTGCCTACCTCT+TGG | - | chr5_3:46822892-46822911 | Msa0814620:intron | 40.0% | |
| ! | TGCTGAGTTGCTGTTAATTC+TGG | - | chr5_3:46823084-46823103 | Msa0814620:CDS | 40.0% |
| ! | TAAGGTGTTCCGCCTATATA+CGG | - | chr5_3:46823155-46823174 | Msa0814620:CDS | 40.0% |
| GTCATTGCATTTCCAGATGA+TGG | - | chr5_3:46823359-46823378 | Msa0814620:intron | 40.0% | |
| AAGGTGACAAGAGGATAGTT+CGG | - | chr5_3:46823524-46823543 | Msa0814620:intron | 40.0% | |
| GATGATTTAGTCCAATCTGG+AGG | - | chr5_3:46823589-46823608 | Msa0814620:intron | 40.0% | |
| AGCCTCTTGTGTAAAGAAAC+AGG | - | chr5_3:46823787-46823806 | Msa0814620:intron | 40.0% | |
| GCCTCTTGTGTAAAGAAACA+GGG | - | chr5_3:46823788-46823807 | Msa0814620:intron | 40.0% | |
| ! | ACCCTGTTTCTTTACACAAG+AGG | + | chr5_3:46823792-46823811 | None:intergenic | 40.0% |
| CTAAAGCTCCTGCATACATA+GGG | + | chr5_3:46823857-46823876 | None:intergenic | 40.0% | |
| ACTAAAGCTCCTGCATACAT+AGG | + | chr5_3:46823858-46823877 | None:intergenic | 40.0% | |
| ! | ATCGCAACCATGATTGGTTA+GGG | + | chr5_3:46824258-46824277 | None:intergenic | 40.0% |
| ! | AATCGCAACCATGATTGGTT+AGG | + | chr5_3:46824259-46824278 | None:intergenic | 40.0% |
| TTGCGATTCACTCACAAAGA+TGG | - | chr5_3:46824271-46824290 | Msa0814620:intron | 40.0% | |
| !!! | AGAAGGCATTTGCCTACTTT+TGG | - | chr5_3:46824390-46824409 | Msa0814620:intron | 40.0% |
| !! | TCAGTGTTGTCGATGATGGA+TGG | - | chr5_3:46821044-46821063 | Msa0814620:intron | 45.0% |
| GGATGGCAGAATATTGAGGA+AGG | - | chr5_3:46821061-46821080 | Msa0814620:intron | 45.0% | |
| GCTGCAATGGCGTGTTTATA+TGG | + | chr5_3:46821098-46821117 | None:intergenic | 45.0% | |
| CTATGGAGCTGACAAATTGC+CGG | - | chr5_3:46821118-46821137 | Msa0814620:intron | 45.0% | |
| CAACCAGATGAAGATGGTGT+AGG | + | chr5_3:46821214-46821233 | None:intergenic | 45.0% | |
| TAAAGATCCCCAAACTGTGG+AGG | + | chr5_3:46821374-46821393 | None:intergenic | 45.0% | |
| ! | TTATCCAGGTCTTTTGCCGA+TGG | - | chr5_3:46821503-46821522 | Msa0814620:intron | 45.0% |
| ! | TATCCAGGTCTTTTGCCGAT+GGG | - | chr5_3:46821504-46821523 | Msa0814620:intron | 45.0% |
| AATAACGCAGAAGAGCTCAG+AGG | - | chr5_3:46821545-46821564 | Msa0814620:intron | 45.0% | |
| ! | AGGTCAACACGTTGCCTTTT+TGG | - | chr5_3:46821565-46821584 | Msa0814620:intron | 45.0% |
| ! | GTTTTGCCTTTCTTCCCAAC+TGG | - | chr5_3:46821674-46821693 | Msa0814620:intron | 45.0% |
| TGAGCGAATGGAAGAAGAAG+GGG | - | chr5_3:46821703-46821722 | Msa0814620:intron | 45.0% | |
| ATATGACATTCATGCCCTGC+AGG | - | chr5_3:46821805-46821824 | Msa0814620:intron | 45.0% | |
| !!! | GAGGTTTTATTTCGGAGACG+AGG | - | chr5_3:46822157-46822176 | Msa0814620:intron | 45.0% |
| ! | GTTGTAGCAGACGTTGCTTT+AGG | + | chr5_3:46822214-46822233 | None:intergenic | 45.0% |
| !!! | ACTTTTTGGGTGGTTTCTCG+GGG | - | chr5_3:46822302-46822321 | Msa0814620:intron | 45.0% |
| GTGGAGTTGGAATTTGGAAG+AGG | - | chr5_3:46822342-46822361 | Msa0814620:intron | 45.0% | |
| GGAGTTGGAATTTGGAAGAG+GGG | - | chr5_3:46822344-46822363 | Msa0814620:intron | 45.0% | |
| GAGTTGGAATTTGGAAGAGG+GGG | - | chr5_3:46822345-46822364 | Msa0814620:intron | 45.0% | |
| AGTTGGAATTTGGAAGAGGG+GGG | - | chr5_3:46822346-46822365 | Msa0814620:intron | 45.0% | |
| GTGTTGGAAGAAGAGAGAAG+TGG | - | chr5_3:46822415-46822434 | Msa0814620:intron | 45.0% | |
| GGAAGAAGAGAGAAGTGGTT+TGG | - | chr5_3:46822420-46822439 | Msa0814620:intron | 45.0% | |
| AAAAATCGGTCTCCGGATTC+AGG | - | chr5_3:46822469-46822488 | Msa0814620:intron | 45.0% | |
| TCTCCGGATTCAGGCTAATT+TGG | - | chr5_3:46822478-46822497 | Msa0814620:intron | 45.0% | |
| CAGAAATGTGGTGAAAGAGG+TGG | - | chr5_3:46822533-46822552 | Msa0814620:intron | 45.0% | |
| AGAGGTGGATGAGATAGTAG+AGG | - | chr5_3:46822548-46822567 | Msa0814620:intron | 45.0% | |
| !! | AGGATATCAAGGTGTTGTCG+TGG | - | chr5_3:46822568-46822587 | Msa0814620:intron | 45.0% |
| !! | AATCCAAGGGAGTGCCTATA+GGG | - | chr5_3:46822648-46822667 | Msa0814620:CDS | 45.0% |
| CGTACTATTGCTGTAGCTTC+TGG | - | chr5_3:46822717-46822736 | Msa0814620:intron | 45.0% | |
| ! | TTCTGGGCGTTTTTCTCTAC+TGG | - | chr5_3:46822734-46822753 | Msa0814620:intron | 45.0% |
| ! | TGTTGGTGTGGCTTCTGTTT+TGG | - | chr5_3:46822767-46822786 | Msa0814620:intron | 45.0% |
| GCTGAACAGGATTAACAGAG+GGG | + | chr5_3:46822949-46822968 | None:intergenic | 45.0% | |
| CGCTGAACAGGATTAACAGA+GGG | + | chr5_3:46822950-46822969 | None:intergenic | 45.0% | |
| ! | AGGCAAGGGTATGCATGATT+GGG | - | chr5_3:46822979-46822998 | Msa0814620:intron | 45.0% |
| CATGATTGGGTTCGTGCTTA+GGG | - | chr5_3:46822992-46823011 | Msa0814620:intron | 45.0% | |
| TGCTTAGGGAGCAGATTGTT+AGG | - | chr5_3:46823006-46823025 | Msa0814620:intron | 45.0% | |
| TTAGGGAGCAGATTGTTAGG+TGG | - | chr5_3:46823009-46823028 | Msa0814620:intron | 45.0% | |
| ! | CATTTCCAGATGATGGTGCA+TGG | - | chr5_3:46823366-46823385 | Msa0814620:intron | 45.0% |
| !! | GTCTAATTTTTGGGAGTGGC+AGG | - | chr5_3:46823480-46823499 | Msa0814620:intron | 45.0% |
| ! | GTATGCACAAAGGTACGTGA+AGG | - | chr5_3:46823505-46823524 | Msa0814620:intron | 45.0% |
| TGCGTACAATGACCATATGG+TGG | - | chr5_3:46823817-46823836 | Msa0814620:intron | 45.0% | |
| GCGTACAATGACCATATGGT+GGG | - | chr5_3:46823818-46823837 | Msa0814620:intron | 45.0% | |
| AAAAATGAAAACGGGCAGCC+CGG | + | chr5_3:46823884-46823903 | None:intergenic | 45.0% | |
| TGGCTGCCAAAACTTTCTGA+GGG | + | chr5_3:46824192-46824211 | None:intergenic | 45.0% | |
| TTGGCTGCCAAAACTTTCTG+AGG | + | chr5_3:46824193-46824212 | None:intergenic | 45.0% | |
| !! | CAGAAAGTTTTGGCAGCCAA+TGG | - | chr5_3:46824193-46824212 | Msa0814620:intron | 45.0% |
| !! | ACTCACTTTTGCTGCACCAT+TGG | + | chr5_3:46824212-46824231 | None:intergenic | 45.0% |
| GAGTGAATCGCAACCATGAT+TGG | + | chr5_3:46824264-46824283 | None:intergenic | 45.0% | |
| CACAGATTCTTGCCCTGTTA+CGG | - | chr5_3:46824415-46824434 | Msa0814620:intron | 45.0% | |
| GCTATGTTGAGTGTTAACCC+TGG | - | chr5_3:46824681-46824700 | Msa0814620:five_prime_UTR | 45.0% | |
| !! | ATCATAAAAATAATAAATTA+AGG | + | chr5_3:46823333-46823352 | None:intergenic | 5.0% |
| ! | CGACAACACTGATTGTAGGC+AGG | + | chr5_3:46821036-46821055 | None:intergenic | 50.0% |
| AAACACGCCATTGCAGCCTA+TGG | - | chr5_3:46821101-46821120 | Msa0814620:intron | 50.0% | |
| CGGCAATTTGTCAGCTCCAT+AGG | + | chr5_3:46821120-46821139 | None:intergenic | 50.0% | |
| AGCTGACAAATTGCCGGTGA+CGG | - | chr5_3:46821124-46821143 | Msa0814620:intron | 50.0% | |
| CTGCCTACACCATCTTCATC+TGG | - | chr5_3:46821208-46821227 | Msa0814620:intron | 50.0% | |
| AAACCCATCGGCAAAAGACC+TGG | + | chr5_3:46821510-46821529 | None:intergenic | 50.0% | |
| GTTGGGCCACCTCTTGAAAT+TGG | + | chr5_3:46821773-46821792 | None:intergenic | 50.0% | |
| !! | AGCAGACGTTGCTTTAGGAG+AGG | + | chr5_3:46822209-46822228 | None:intergenic | 50.0% |
| GGATGGGTGGAGTTGGAATT+TGG | - | chr5_3:46822336-46822355 | Msa0814620:intron | 50.0% | |
| TCCAACACCAGTCGTAGTAC+AGG | + | chr5_3:46822629-46822648 | None:intergenic | 50.0% | |
| ! | ACGACTGGTGTTGGAATCCA+AGG | - | chr5_3:46822634-46822653 | Msa0814620:CDS | 50.0% |
| ! | CGACTGGTGTTGGAATCCAA+GGG | - | chr5_3:46822635-46822654 | Msa0814620:CDS | 50.0% |
| !! | GAATCCAAGGGAGTGCCTAT+AGG | - | chr5_3:46822647-46822666 | Msa0814620:CDS | 50.0% |
| ! | GAGTGCCTATAGGGTGTCAT+TGG | - | chr5_3:46822657-46822676 | Msa0814620:CDS | 50.0% |
| GCTAGCCAATGACACCCTAT+AGG | + | chr5_3:46822665-46822684 | None:intergenic | 50.0% | |
| ! | GTCATTGGCTAGCAAGAGGA+AGG | - | chr5_3:46822672-46822691 | Msa0814620:CDS | 50.0% |
| GCTAGCAAGAGGAAGGTTGT+GGG | - | chr5_3:46822679-46822698 | Msa0814620:intron | 50.0% | |
| CTAGCAAGAGGAAGGTTGTG+GGG | - | chr5_3:46822680-46822699 | Msa0814620:intron | 50.0% | |
| TAGCAAGAGGAAGGTTGTGG+GGG | - | chr5_3:46822681-46822700 | Msa0814620:intron | 50.0% | |
| !!! | GGCTTCTGTTTTGGTTCTGC+TGG | - | chr5_3:46822776-46822795 | Msa0814620:intron | 50.0% |
| !! | TTGTGCCAGCGGATTGCTTT+AGG | - | chr5_3:46822825-46822844 | Msa0814620:intron | 50.0% |
| GCGCTGAACAGGATTAACAG+AGG | + | chr5_3:46822951-46822970 | None:intergenic | 50.0% | |
| CTGTTAATCCTGTTCAGCGC+TGG | - | chr5_3:46822951-46822970 | Msa0814620:intron | 50.0% | |
| ! | GAGGCAAGGGTATGCATGAT+TGG | - | chr5_3:46822978-46822997 | Msa0814620:intron | 50.0% |
| GCATGATTGGGTTCGTGCTT+AGG | - | chr5_3:46822991-46823010 | Msa0814620:intron | 50.0% | |
| CAAAAGCCGCCGTATATAGG+CGG | + | chr5_3:46823167-46823186 | None:intergenic | 50.0% | |
| CACCAAAAGCCGCCGTATAT+AGG | + | chr5_3:46823170-46823189 | None:intergenic | 50.0% | |
| GTGGCAGGTTGTATGCACAA+AGG | - | chr5_3:46823495-46823514 | Msa0814620:intron | 50.0% | |
| AGGTACGTGAAGGTGACAAG+AGG | - | chr5_3:46823515-46823534 | Msa0814620:intron | 50.0% | |
| CAAGAGGATAGTTCGGCTCA+AGG | - | chr5_3:46823531-46823550 | Msa0814620:intron | 50.0% | |
| AGGATAGTTCGGCTCAAGGA+AGG | - | chr5_3:46823535-46823554 | Msa0814620:intron | 50.0% | |
| CTCAAGGAAGGTCATGTCTC+TGG | - | chr5_3:46823547-46823566 | Msa0814620:intron | 50.0% | |
| ! | CAATTAGGGTGCCTCCAGAT+TGG | + | chr5_3:46823603-46823622 | None:intergenic | 50.0% |
| AGGCACCCTAATTGAGTGTC+AGG | - | chr5_3:46823609-46823628 | Msa0814620:intron | 50.0% | |
| GGCTGCGTACAATGACCATA+TGG | - | chr5_3:46823814-46823833 | Msa0814620:intron | 50.0% | |
| CATACATAGGGTTCGGGAAG+GGG | + | chr5_3:46823845-46823864 | None:intergenic | 50.0% | |
| GCATACATAGGGTTCGGGAA+GGG | + | chr5_3:46823846-46823865 | None:intergenic | 50.0% | |
| TGCATACATAGGGTTCGGGA+AGG | + | chr5_3:46823847-46823866 | None:intergenic | 50.0% | |
| TTCCCGAACCCTATGTATGC+AGG | - | chr5_3:46823846-46823865 | Msa0814620:intron | 50.0% | |
| CTCCTGCATACATAGGGTTC+GGG | + | chr5_3:46823851-46823870 | None:intergenic | 50.0% | |
| GCTCCTGCATACATAGGGTT+CGG | + | chr5_3:46823852-46823871 | None:intergenic | 50.0% | |
| ! | ATGCAGGAGCTTTAGTGCAC+CGG | - | chr5_3:46823862-46823881 | Msa0814620:intron | 50.0% |
| GTGAGTGCCTATGTCACACA+TGG | - | chr5_3:46824226-46824245 | Msa0814620:intron | 50.0% | |
| GAACACGCCATGTGTGACAT+AGG | + | chr5_3:46824236-46824255 | None:intergenic | 50.0% | |
| GCGTGTTCCCTAACCAATCA+TGG | - | chr5_3:46824248-46824267 | Msa0814620:intron | 50.0% | |
| ACTTGCAGAAGCCTCAGAGA+AGG | - | chr5_3:46824373-46824392 | Msa0814620:intron | 50.0% | |
| GTAGGCAAATGCCTTCTCTG+AGG | + | chr5_3:46824387-46824406 | None:intergenic | 50.0% | |
| ! | CCAGAGCTTTGACCGTAACA+GGG | + | chr5_3:46824430-46824449 | None:intergenic | 50.0% |
| GTCAGCTCCATAGGCTGCAA+TGG | + | chr5_3:46821111-46821130 | None:intergenic | 55.0% | |
| TCCGCCATGCCATTCTTCCA+TGG | - | chr5_3:46821158-46821177 | Msa0814620:intron | 55.0% | |
| GCCATGGAAGAATGGCATGG+CGG | + | chr5_3:46821162-46821181 | None:intergenic | 55.0% | |
| GCCATGCCATTCTTCCATGG+CGG | - | chr5_3:46821161-46821180 | Msa0814620:intron | 55.0% | |
| ACCGCCATGGAAGAATGGCA+TGG | + | chr5_3:46821165-46821184 | None:intergenic | 55.0% | |
| ATGGCACCGCCATGGAAGAA+TGG | + | chr5_3:46821170-46821189 | None:intergenic | 55.0% | |
| ! | ATTCTTCCATGGCGGTGCCA+TGG | - | chr5_3:46821169-46821188 | Msa0814620:intron | 55.0% |
| CAACTGCCTTCACCCTTGCA+CGG | - | chr5_3:46821732-46821751 | Msa0814620:intron | 55.0% | |
| CAACATCCGTGCAAGGGTGA+AGG | + | chr5_3:46821741-46821760 | None:intergenic | 55.0% | |
| ! | GGAAGAGGGGGGAGTTTTCA+CGG | - | chr5_3:46822357-46822376 | Msa0814620:intron | 55.0% |
| !! | TCAAGGTGTTGTCGTGGCGA+TGG | - | chr5_3:46822574-46822593 | Msa0814620:intron | 55.0% |
| CAGTCGTAGTACAGGCAAGG+TGG | + | chr5_3:46822621-46822640 | None:intergenic | 55.0% | |
| CACCTTGCCTGTACTACGAC+TGG | - | chr5_3:46822619-46822638 | Msa0814620:CDS | 55.0% | |
| CACCAGTCGTAGTACAGGCA+AGG | + | chr5_3:46822624-46822643 | None:intergenic | 55.0% | |
| GCCTGTACTACGACTGGTGT+TGG | - | chr5_3:46822625-46822644 | Msa0814620:CDS | 55.0% | |
| ACACCCTATAGGCACTCCCT+TGG | + | chr5_3:46822654-46822673 | None:intergenic | 55.0% | |
| !! | GGGTGTCATTGGCTAGCAAG+AGG | - | chr5_3:46822668-46822687 | Msa0814620:CDS | 55.0% |
| GGCTAGCAAGAGGAAGGTTG+TGG | - | chr5_3:46822678-46822697 | Msa0814620:intron | 55.0% | |
| AGCAAGAGGAAGGTTGTGGG+GGG | - | chr5_3:46822682-46822701 | Msa0814620:intron | 55.0% | |
| AGGCTCCTAAAGCAATCCGC+TGG | + | chr5_3:46822833-46822852 | None:intergenic | 55.0% | |
| !! | GCGGATTGCTTTAGGAGCCT+TGG | - | chr5_3:46822833-46822852 | Msa0814620:intron | 55.0% |
| GGTGTTCCGCCTATATACGG+CGG | - | chr5_3:46823158-46823177 | Msa0814620:CDS | 55.0% | |
| ! | CGCCTATATACGGCGGCTTT+TGG | - | chr5_3:46823165-46823184 | Msa0814620:CDS | 55.0% |
| CGCTTCCATGCACCATCATC+TGG | + | chr5_3:46823374-46823393 | None:intergenic | 55.0% | |
| TCAGTGGTCGGTCTCCCATA+AGG | - | chr5_3:46823419-46823438 | Msa0814620:intron | 55.0% | |
| ! | TGCAGGAGCTTTAGTGCACC+GGG | - | chr5_3:46823863-46823882 | Msa0814620:intron | 55.0% |
| CCCTGTTACGGTCAAAGCTC+TGG | - | chr5_3:46824427-46824446 | Msa0814620:intron | 55.0% | |
| ! | GCCAGAGCTTTGACCGTAAC+AGG | + | chr5_3:46824431-46824450 | None:intergenic | 55.0% |
| GGTGGTTTCTCGGGGTCGTT+GGG | - | chr5_3:46822310-46822329 | Msa0814620:intron | 60.0% | |
| GTGGTTTCTCGGGGTCGTTG+GGG | - | chr5_3:46822311-46822330 | Msa0814620:intron | 60.0% | |
| TGGTTTCTCGGGGTCGTTGG+GGG | - | chr5_3:46822312-46822331 | Msa0814620:intron | 60.0% | |
| AAGAGGAAGGTTGTGGGGGG+TGG | - | chr5_3:46822685-46822704 | Msa0814620:intron | 60.0% | |
| AGAGGAAGGTTGTGGGGGGT+GGG | - | chr5_3:46822686-46822705 | Msa0814620:intron | 60.0% | |
| ! | CCTCACTACCAGCGCTGAAC+AGG | + | chr5_3:46822962-46822981 | None:intergenic | 60.0% |
| !! | CCTGTTCAGCGCTGGTAGTG+AGG | - | chr5_3:46822959-46822978 | Msa0814620:intron | 60.0% |
| !! | TCAGCGCTGGTAGTGAGGCA+AGG | - | chr5_3:46822964-46822983 | Msa0814620:intron | 60.0% |
| !! | CAGCGCTGGTAGTGAGGCAA+GGG | - | chr5_3:46822965-46822984 | Msa0814620:intron | 60.0% |
| TGGCTACCATGGCACCGCCA+TGG | + | chr5_3:46821178-46821197 | None:intergenic | 65.0% | |
| GGGTGGTTTCTCGGGGTCGT+TGG | - | chr5_3:46822309-46822328 | Msa0814620:intron | 65.0% | |
| TTTCTCGGGGTCGTTGGGGG+AGG | - | chr5_3:46822315-46822334 | Msa0814620:intron | 65.0% | |
| TGGGGGAGGATGGGTGGAGT+TGG | - | chr5_3:46822329-46822348 | Msa0814620:intron | 65.0% | |
| GAGGAAGGTTGTGGGGGGTG+GGG | - | chr5_3:46822687-46822706 | Msa0814620:intron | 65.0% | |
| AGGAAGGTTGTGGGGGGTGG+GGG | - | chr5_3:46822688-46822707 | Msa0814620:intron | 65.0% | |
| CGGGAAGGGGTCCCACCATA+TGG | + | chr5_3:46823832-46823851 | None:intergenic | 65.0% | |
| TCGGGGTCGTTGGGGGAGGA+TGG | - | chr5_3:46822319-46822338 | Msa0814620:intron | 70.0% | |
| CGGGGTCGTTGGGGGAGGAT+GGG | - | chr5_3:46822320-46822339 | Msa0814620:intron | 70.0% | |
| GGTCGTTGGGGGAGGATGGG+TGG | - | chr5_3:46822323-46822342 | Msa0814620:intron | 70.0% | |
| GGAAGGTTGTGGGGGGTGGG+GGG | - | chr5_3:46822689-46822708 | Msa0814620:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 46820099 | 46824750 | 46820099 | ID=Msa0814620;Name=Msa0814620 |
| chr5_3 | mRNA | 46820099 | 46824750 | 46820099 | ID=Msa0814620-mRNA-1;Parent=Msa0814620;Name=Msa0814620-mRNA-1;_AED=0.07;_eAED=0.07;_QI=72|0.83|1|1|0.83|0.71|7|252|276 |
| chr5_3 | exon | 46820099 | 46820232 | 46820099 | ID=Msa0814620-mRNA-1:exon:14187;Parent=Msa0814620-mRNA-1 |
| chr5_3 | exon | 46820255 | 46820468 | 46820255 | ID=Msa0814620-mRNA-1:exon:14186;Parent=Msa0814620-mRNA-1 |
| chr5_3 | exon | 46821219 | 46821347 | 46821219 | ID=Msa0814620-mRNA-1:exon:14185;Parent=Msa0814620-mRNA-1 |
| chr5_3 | exon | 46821425 | 46821493 | 46821425 | ID=Msa0814620-mRNA-1:exon:14184;Parent=Msa0814620-mRNA-1 |
| chr5_3 | exon | 46822599 | 46822694 | 46822599 | ID=Msa0814620-mRNA-1:exon:14183;Parent=Msa0814620-mRNA-1 |
| chr5_3 | exon | 46823023 | 46823338 | 46823023 | ID=Msa0814620-mRNA-1:exon:14182;Parent=Msa0814620-mRNA-1 |
| chr5_3 | exon | 46824554 | 46824750 | 46824554 | ID=Msa0814620-mRNA-1:exon:14181;Parent=Msa0814620-mRNA-1 |
| chr5_3 | five_prime_UTR | 46824679 | 46824750 | 46824679 | ID=Msa0814620-mRNA-1:five_prime_utr;Parent=Msa0814620-mRNA-1 |
| chr5_3 | CDS | 46824554 | 46824678 | 46824554 | ID=Msa0814620-mRNA-1:cds;Parent=Msa0814620-mRNA-1 |
| chr5_3 | CDS | 46823023 | 46823338 | 46823023 | ID=Msa0814620-mRNA-1:cds;Parent=Msa0814620-mRNA-1 |
| chr5_3 | CDS | 46822599 | 46822694 | 46822599 | ID=Msa0814620-mRNA-1:cds;Parent=Msa0814620-mRNA-1 |
| chr5_3 | CDS | 46821425 | 46821493 | 46821425 | ID=Msa0814620-mRNA-1:cds;Parent=Msa0814620-mRNA-1 |
| chr5_3 | CDS | 46821219 | 46821347 | 46821219 | ID=Msa0814620-mRNA-1:cds;Parent=Msa0814620-mRNA-1 |
| chr5_3 | CDS | 46820373 | 46820468 | 46820373 | ID=Msa0814620-mRNA-1:cds;Parent=Msa0814620-mRNA-1 |
| chr5_3 | three_prime_UTR | 46820255 | 46820372 | 46820255 | ID=Msa0814620-mRNA-1:three_prime_utr;Parent=Msa0814620-mRNA-1 |
| chr5_3 | three_prime_UTR | 46820099 | 46820232 | 46820099 | ID=Msa0814620-mRNA-1:three_prime_utr;Parent=Msa0814620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
