Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777560 | XP_003616047.1 | 99.593 | 246 | 1 | 0 | 1 | 246 | 1 | 246 | 0.0 | 510 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777560 | sp|Q680A5|KPRS4_ARATH | 79.508 | 244 | 49 | 1 | 8 | 251 | 25 | 267 | 1.01e-143 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777560 | G7K0V0 | 99.593 | 246 | 1 | 0 | 1 | 246 | 1 | 246 | 0.0 | 510 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0735580 | Msa0777560 | 0.982553 | 2.176881e-155 | -8.615850e-47 |
| Msa0777560 | Msa0814620 | 0.900973 | 4.284234e-78 | -8.615850e-47 |
| Msa0382950 | Msa0777560 | 0.816969 | 4.203168e-52 | -8.615850e-47 |
| Msa0277600 | Msa0777560 | 0.807512 | 4.874768e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777560 | MtrunA17_Chr5g0432811 | 99.593 | 246 | 1 | 0 | 1 | 246 | 1 | 246 | 0.0 | 510 |
| Msa0777560 | MtrunA17_Chr3g0096511 | 98.780 | 246 | 3 | 0 | 1 | 246 | 1 | 246 | 0.0 | 507 |
| Msa0777560 | MtrunA17_Chr5g0412911 | 74.059 | 239 | 61 | 1 | 8 | 246 | 88 | 325 | 3.10e-128 | 370 |
| Msa0777560 | MtrunA17_Chr3g0096491 | 61.491 | 161 | 20 | 4 | 83 | 237 | 4 | 128 | 4.13e-55 | 174 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0777560 | AT2G42910.1 | 79.508 | 244 | 49 | 1 | 8 | 251 | 25 | 267 | 1.02e-144 | 409 |
| Msa0777560 | AT1G10700.1 | 72.803 | 239 | 64 | 1 | 8 | 246 | 98 | 335 | 6.22e-128 | 370 |
| Msa0777560 | AT1G10700.2 | 71.503 | 193 | 54 | 1 | 8 | 200 | 98 | 289 | 1.76e-99 | 293 |
Find 81 sgRNAs with CRISPR-Local
Find 351 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGTTATTTATAAATATATT+TGG | 0.186047 | 5_2:+56613186 | None:intergenic |
| CAGAGACTTGAAACAGTTTC+AGG | 0.230437 | 5_2:+56609834 | None:intergenic |
| GTTGGGCCACCTCTTGAAAT+TGG | 0.235056 | 5_2:+56612946 | None:intergenic |
| AGTTTACCTGACACTCAATT+AGG | 0.236042 | 5_2:+56611124 | None:intergenic |
| GCCAGAGCTTTGACTGTAAC+TGG | 0.254674 | 5_2:+56610311 | None:intergenic |
| AGAAGGCATTTGCCTACTTT+TGG | 0.262156 | 5_2:-56610349 | Msa0777560:CDS |
| GTTGATGATTTAGTCCAATC+TGG | 0.298173 | 5_2:-56611153 | Msa0777560:CDS |
| CGCTTCCATGCACCATCATC+TGG | 0.347826 | 5_2:+56611357 | None:intergenic |
| AACATACCTCAATAAGATAT+AGG | 0.373181 | 5_2:+56610094 | None:intergenic |
| GTTGTAGCAGACGTTGCTTT+AGG | 0.373616 | 5_2:+56612505 | None:intergenic |
| GCATGAGATTTCTCATCAAC+AGG | 0.378547 | 5_2:-56610022 | Msa0777560:three_prime_UTR |
| AATTGAGCTTTGTGAATAAC+GGG | 0.383604 | 5_2:-56610217 | Msa0777560:three_prime_UTR |
| AGAGCTGAATGATGCCAAAA+AGG | 0.389793 | 5_2:+56613137 | None:intergenic |
| GTTTACCTGACACTCAATTA+GGG | 0.394592 | 5_2:+56611125 | None:intergenic |
| ACATACCTCAATAAGATATA+GGG | 0.418124 | 5_2:+56610095 | None:intergenic |
| TTGCAAGTTCTTCACAATCA+AGG | 0.418746 | 5_2:+56614485 | None:intergenic |
| GTCATTGCATTTCCAGATGA+TGG | 0.424723 | 5_2:-56611369 | Msa0777560:CDS |
| AAATTGAGCTTTGTGAATAA+CGG | 0.431173 | 5_2:-56610218 | Msa0777560:three_prime_UTR |
| TTTGAAGTATTGAGTCTAGC+AGG | 0.437700 | 5_2:-56610275 | Msa0777560:exon |
| TCATATATGACTAAACTAGT+TGG | 0.456462 | 5_2:+56612928 | None:intergenic |
| TGCAAGTTCTTCACAATCAA+GGG | 0.457166 | 5_2:+56614486 | None:intergenic |
| ATCCTTCAATGATTCTTAGT+AGG | 0.458870 | 5_2:-56609893 | Msa0777560:three_prime_UTR |
| GGGCACCCTAATTGAGTGTC+AGG | 0.460843 | 5_2:-56611130 | Msa0777560:intron |
| TTGATGATTTAGTCCAATCT+GGG | 0.464717 | 5_2:-56611152 | Msa0777560:CDS |
| CTCAAGGAAGGTCATGTCTC+TGG | 0.466819 | 5_2:-56611192 | Msa0777560:CDS |
| ATTTGTTGCTTCTTTCACAT+TGG | 0.469191 | 5_2:-56613064 | Msa0777560:CDS |
| ATACTCACATTATCAGCATC+AGG | 0.471492 | 5_2:+56612480 | None:intergenic |
| AATGATCCAGTTGGGAAGAA+AGG | 0.473072 | 5_2:+56613036 | None:intergenic |
| AGTTGTTCAAACACTTGAGC+TGG | 0.480569 | 5_2:+56613114 | None:intergenic |
| GCTAGACTCAATACTTCAAA+AGG | 0.480610 | 5_2:+56610278 | None:intergenic |
| TTGAACCCTATATCTTATTG+AGG | 0.482955 | 5_2:-56610100 | Msa0777560:three_prime_UTR |
| AATAATTGTCGAACAACTTG+TGG | 0.483377 | 5_2:+56611331 | None:intergenic |
| CATATATGACTAAACTAGTT+GGG | 0.489811 | 5_2:+56612929 | None:intergenic |
| ATATGACATTCATGCCCTGC+AGG | 0.491592 | 5_2:-56612911 | Msa0777560:intron |
| AGAGACTTGAAACAGTTTCA+GGG | 0.493704 | 5_2:+56609835 | None:intergenic |
| TCACTCTTCAGAATATCAAA+TGG | 0.496186 | 5_2:-56614432 | Msa0777560:CDS |
| AACTGGATCATTTGAGCGAA+TGG | 0.500509 | 5_2:-56613025 | Msa0777560:CDS |
| TGCCTACTAAGAATCATTGA+AGG | 0.503406 | 5_2:+56609891 | None:intergenic |
| AGAGAGAGAAAAGAGAAGAA+TGG | 0.503484 | 5_2:-56614551 | Msa0777560:exon |
| CCCAGTTACAGTCAAAGCTC+TGG | 0.506982 | 5_2:-56610312 | Msa0777560:CDS |
| TTCGCTCAAATGATCCAGTT+GGG | 0.520965 | 5_2:+56613028 | None:intergenic |
| AAGGTGACAAGAGGATAGTT+CGG | 0.530143 | 5_2:-56611215 | Msa0777560:CDS |
| AGAAAAGAGAAGAATGGCAA+TGG | 0.531717 | 5_2:-56614545 | Msa0777560:exon |
| TTTGAGCGAATGGAAGAAGA+AGG | 0.532177 | 5_2:-56613015 | Msa0777560:CDS |
| AATATTCCAATTTCAAGAGG+TGG | 0.547449 | 5_2:-56612952 | Msa0777560:CDS |
| ATTCGCTCAAATGATCCAGT+TGG | 0.550408 | 5_2:+56613027 | None:intergenic |
| TCAAATATTCCAATTTCAAG+AGG | 0.551790 | 5_2:-56612955 | Msa0777560:CDS |
| TTCAATGTGCTAAGCTCACA+AGG | 0.563177 | 5_2:+56610148 | None:intergenic |
| CCAGAGCTTTGACTGTAACT+GGG | 0.567033 | 5_2:+56610312 | None:intergenic |
| AGAATCTGTGATCCAAAAGT+AGG | 0.570262 | 5_2:+56610337 | None:intergenic |
| CTAAGCTCACAAGGATATGA+TGG | 0.571963 | 5_2:+56610157 | None:intergenic |
| CAACATCCGTGCAAGGGTGA+AGG | 0.572743 | 5_2:+56612978 | None:intergenic |
| AGGATAGTTCGGCTCAAGGA+AGG | 0.572954 | 5_2:-56611204 | Msa0777560:CDS |
| AAATATATTTGGAAACCCAT+CGG | 0.573432 | 5_2:+56613197 | None:intergenic |
| CAACTGCCTTCACCCTTGCA+CGG | 0.575482 | 5_2:-56612984 | Msa0777560:CDS |
| TTGAAGTATTGAGTCTAGCA+GGG | 0.577295 | 5_2:-56610274 | Msa0777560:exon |
| TTGAGCGAATGGAAGAAGAA+GGG | 0.584772 | 5_2:-56613014 | Msa0777560:CDS |
| CAAGAGGATAGTTCGGCTCA+AGG | 0.585535 | 5_2:-56611208 | Msa0777560:CDS |
| TATTTGACAACATCCGTGCA+AGG | 0.586552 | 5_2:+56612971 | None:intergenic |
| CATTTCCAGATGATGGTGCA+TGG | 0.590118 | 5_2:-56611362 | Msa0777560:CDS |
| AGCAGACGTTGCTTTAGGAG+AGG | 0.593619 | 5_2:+56612510 | None:intergenic |
| GTTGTTCGACAATTATTCAG+TGG | 0.594555 | 5_2:-56611325 | Msa0777560:intron |
| GGAATACCAGTCTCAAACAA+TGG | 0.599758 | 5_2:+56612531 | None:intergenic |
| TGAGCGAATGGAAGAAGAAG+GGG | 0.613969 | 5_2:-56613013 | Msa0777560:CDS |
| AACTGAAACACATTTCCTCA+AGG | 0.615850 | 5_2:-56609916 | Msa0777560:three_prime_UTR |
| CATTAAAACACAAACCTGCA+GGG | 0.622993 | 5_2:+56612897 | None:intergenic |
| ACTTGCAGAAGCCTCAGAGA+AGG | 0.630105 | 5_2:-56610366 | Msa0777560:intron |
| ATTTGACAACATCCGTGCAA+GGG | 0.634805 | 5_2:+56612972 | None:intergenic |
| TGATGATTTAGTCCAATCTG+GGG | 0.642420 | 5_2:-56611151 | Msa0777560:CDS |
| AGGTACGTGAAGGTGACAAG+AGG | 0.654440 | 5_2:-56611224 | Msa0777560:CDS |
| GAATCATTGAAGGATCCTTG+AGG | 0.666663 | 5_2:+56609901 | None:intergenic |
| TCAAGACAGAATTATAAACA+TGG | 0.667640 | 5_2:+56609971 | None:intergenic |
| GATGATTTAGTCCAATCTGG+GGG | 0.670939 | 5_2:-56611150 | Msa0777560:CDS |
| GTATGCACAAAGGTACGTGA+AGG | 0.671287 | 5_2:-56611234 | Msa0777560:CDS |
| CTCTTCAGAATATCAAATGG+AGG | 0.672816 | 5_2:-56614429 | Msa0777560:intron |
| GTAGGCAAATGCCTTCTCTG+AGG | 0.680450 | 5_2:+56610355 | None:intergenic |
| AAAGAAGCAACAAATAGACG+AGG | 0.695963 | 5_2:+56613072 | None:intergenic |
| GTGGCAGGTTGTATGCACAA+AGG | 0.717387 | 5_2:-56611244 | Msa0777560:intron |
| AAGAAGCAACAAATAGACGA+GGG | 0.724453 | 5_2:+56613073 | None:intergenic |
| GGTATGTTGAGTGTTAACAC+TGG | 0.755662 | 5_2:-56610079 | Msa0777560:three_prime_UTR |
| AATAACGCAGAAGAGCTCAG+AGG | 0.761164 | 5_2:-56613171 | Msa0777560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATATTTTTATACATGTT+TGG | - | chr5_2:56610020-56610039 | Msa0777560:three_prime_UTR | 10.0% |
| !!! | ATTGTTTTAAATTTTAAGAA+AGG | + | chr5_2:56611956-56611975 | None:intergenic | 10.0% |
| !!! | AATTTATTATTTTTATGATC+AGG | - | chr5_2:56612998-56613017 | Msa0777560:CDS | 10.0% |
| !! | TTTGTAATTAAAAATGAAAA+CGG | + | chr5_2:56613545-56613564 | None:intergenic | 10.0% |
| !!! | TTTTTTATTCTTTAACTGTT+TGG | + | chr5_2:56610313-56610332 | None:intergenic | 15.0% |
| !! | GCGTTATTTATAAATATATT+TGG | + | chr5_2:56611209-56611228 | None:intergenic | 15.0% |
| !!! | ATTTAAAACAATGTACTTTT+TGG | - | chr5_2:56611964-56611983 | Msa0777560:intron | 15.0% |
| !!! | TTTAAAACAATGTACTTTTT+GGG | - | chr5_2:56611965-56611984 | Msa0777560:intron | 15.0% |
| !! | GAAAAAAGAAAAAAAAAACA+AGG | + | chr5_2:56612864-56612883 | None:intergenic | 15.0% |
| !!! | TTTATAGTTGTCTAATTTTT+GGG | - | chr5_2:56613124-56613143 | Msa0777560:CDS | 15.0% |
| !! | TTGTAATTAAAAATGAAAAC+GGG | + | chr5_2:56613544-56613563 | None:intergenic | 15.0% |
| !! | AATATTTGTACAAAAAACAT+TGG | - | chr5_2:56613597-56613616 | Msa0777560:intron | 15.0% |
| !! | TAAATAGAGTGAAAATAAAA+TGG | - | chr5_2:56613668-56613687 | Msa0777560:intron | 15.0% |
| !! | GTAATTGATTAATTAAAAGT+TGG | - | chr5_2:56613690-56613709 | Msa0777560:intron | 15.0% |
| !!! | TTAGAATTTGAATTCATTTT+TGG | - | chr5_2:56614395-56614414 | Msa0777560:intron | 15.0% |
| !!! | AAATATAATCTTTTCCACAA+GGG | + | chr5_2:56610009-56610028 | None:intergenic | 20.0% |
| !!! | AAAATATAATCTTTTCCACA+AGG | + | chr5_2:56610010-56610029 | None:intergenic | 20.0% |
| !!! | TTTTCTAAAATAGTTCTTCA+AGG | - | chr5_2:56610365-56610384 | Msa0777560:intron | 20.0% |
| !!! | TTTCTAAAATAGTTCTTCAA+GGG | - | chr5_2:56610366-56610385 | Msa0777560:intron | 20.0% |
| !! | TTTATCACAACCAATATATA+AGG | + | chr5_2:56610393-56610412 | None:intergenic | 20.0% |
| !! | AAAATCATGAGAATACAATT+CGG | + | chr5_2:56610944-56610963 | None:intergenic | 20.0% |
| !! | AATGACATAACTTAAGAAAT+TGG | + | chr5_2:56611014-56611033 | None:intergenic | 20.0% |
| !! | ACATTACAAACAAACAAATT+AGG | - | chr5_2:56611098-56611117 | Msa0777560:intron | 20.0% |
| !! | ACAAAAAAACTATTCCAATT+TGG | + | chr5_2:56611126-56611145 | None:intergenic | 20.0% |
| !!! | TAGAAACTTATTGAGTTTTA+GGG | - | chr5_2:56611723-56611742 | Msa0777560:intron | 20.0% |
| !!! | TTTTTTATTTGTGATGGTTT+TGG | - | chr5_2:56612785-56612804 | Msa0777560:intron | 20.0% |
| !!! | TTTTTATTTGTGATGGTTTT+GGG | - | chr5_2:56612786-56612805 | Msa0777560:intron | 20.0% |
| !! | TTAAATACATAGATCCTTAT+GGG | + | chr5_2:56613100-56613119 | None:intergenic | 20.0% |
| !! | ATTAAATACATAGATCCTTA+TGG | + | chr5_2:56613101-56613120 | None:intergenic | 20.0% |
| !!! | GTTTATAGTTGTCTAATTTT+TGG | - | chr5_2:56613123-56613142 | Msa0777560:CDS | 20.0% |
| !!! | TTTTTGCTTTCAAATTTGAA+GGG | + | chr5_2:56614157-56614176 | None:intergenic | 20.0% |
| !!! | ATTTTTGCTTTCAAATTTGA+AGG | + | chr5_2:56614158-56614177 | None:intergenic | 20.0% |
| ! | CTAATAATAACAAGTCAACT+AGG | + | chr5_2:56610076-56610095 | None:intergenic | 25.0% |
| !!! | TGACTTGTTATTATTAGAGA+TGG | - | chr5_2:56610079-56610098 | Msa0777560:three_prime_UTR | 25.0% |
| ! | ATACAACAAGATGATATACT+TGG | + | chr5_2:56610136-56610155 | None:intergenic | 25.0% |
| ! | TATATTTATGTTACAGCTTG+TGG | + | chr5_2:56610160-56610179 | None:intergenic | 25.0% |
| !! | ATTAAGTACACTTTTCTTAC+TGG | - | chr5_2:56610185-56610204 | Msa0777560:three_prime_UTR | 25.0% |
| ! | ATTTGCAACATGCAATATAA+AGG | - | chr5_2:56610515-56610534 | Msa0777560:intron | 25.0% |
| ! | TAGATTCAAACTAAATCATG+AGG | - | chr5_2:56610548-56610567 | Msa0777560:intron | 25.0% |
| !! | ACACTGCTTTAAATAATCAT+AGG | - | chr5_2:56610667-56610686 | Msa0777560:intron | 25.0% |
| ! | AAATAATCATAGGATTTGCA+AGG | - | chr5_2:56610677-56610696 | Msa0777560:intron | 25.0% |
| !! | GTGTTTATATGGAAGATTTT+AGG | + | chr5_2:56610760-56610779 | None:intergenic | 25.0% |
| ! | AAACAAATTAGGAACCAAAT+TGG | - | chr5_2:56611109-56611128 | Msa0777560:intron | 25.0% |
| !! | GTTTTTGACCAAATTGATAA+CGG | - | chr5_2:56611144-56611163 | Msa0777560:CDS | 25.0% |
| ! | AAATATATTTGGAAACCCAT+CGG | + | chr5_2:56611198-56611217 | None:intergenic | 25.0% |
| ! | TCAAATATTCCAATTTCAAG+AGG | - | chr5_2:56611437-56611456 | Msa0777560:intron | 25.0% |
| ! | CATATATGACTAAACTAGTT+GGG | + | chr5_2:56611466-56611485 | None:intergenic | 25.0% |
| ! | TCATATATGACTAAACTAGT+TGG | + | chr5_2:56611467-56611486 | None:intergenic | 25.0% |
| !!! | TTGTGTTTTAATGCATTCAA+AGG | - | chr5_2:56611505-56611524 | Msa0777560:intron | 25.0% |
| ! | ATATTCAATAGCAATTCATG+AGG | + | chr5_2:56611577-56611596 | None:intergenic | 25.0% |
| !! | GTAGAAACTTATTGAGTTTT+AGG | - | chr5_2:56611722-56611741 | Msa0777560:intron | 25.0% |
| !!! | AGAAACTTATTGAGTTTTAG+GGG | - | chr5_2:56611724-56611743 | Msa0777560:intron | 25.0% |
| !! | CTAATGATTTGAAATTATGC+AGG | - | chr5_2:56611809-56611828 | Msa0777560:intron | 25.0% |
| ! | AACCATCACAAATAAAAAAC+CGG | + | chr5_2:56612784-56612803 | None:intergenic | 25.0% |
| !!! | TTTGGGTTGTTTTGATTTTA+AGG | - | chr5_2:56612803-56612822 | Msa0777560:intron | 25.0% |
| ! | AAATAATAAATTAAGGCTGC+AGG | + | chr5_2:56612990-56613009 | None:intergenic | 25.0% |
| ! | ATCCAAGTCGTAATTAAAAA+TGG | + | chr5_2:56613417-56613436 | None:intergenic | 25.0% |
| !!! | GAATTTTGTTTCACTGATAA+CGG | - | chr5_2:56613627-56613646 | Msa0777560:intron | 25.0% |
| !! | AAATTGAGCTTTGTGAATAA+CGG | - | chr5_2:56614174-56614193 | Msa0777560:intron | 25.0% |
| ! | ACATACCTCAATAAGATATA+GGG | + | chr5_2:56614300-56614319 | None:intergenic | 25.0% |
| ! | AACATACCTCAATAAGATAT+AGG | + | chr5_2:56614301-56614320 | None:intergenic | 25.0% |
| ! | TCAAGACAGAATTATAAACA+TGG | + | chr5_2:56614424-56614443 | None:intergenic | 25.0% |
| ! | CTTGATTAAAAAATCTTGCA+TGG | - | chr5_2:56614439-56614458 | Msa0777560:CDS | 25.0% |
| ! | AAGAGATTAACATGCTTTTG+TGG | + | chr5_2:56609881-56609900 | None:intergenic | 30.0% |
| TCACTCTTCAGAATATCAAA+TGG | - | chr5_2:56609960-56609979 | Msa0777560:three_prime_UTR | 30.0% | |
| AACAAGATGATATACTTGGA+CGG | + | chr5_2:56610132-56610151 | None:intergenic | 30.0% | |
| !!! | CACTTTTCTTACTGGTTTTA+TGG | - | chr5_2:56610193-56610212 | Msa0777560:three_prime_UTR | 30.0% |
| TTTAGTGATGACACTCTTTA+TGG | - | chr5_2:56610462-56610481 | Msa0777560:intron | 30.0% | |
| ! | TCATGAGGCATTCATAAAAT+AGG | - | chr5_2:56610563-56610582 | Msa0777560:intron | 30.0% |
| !! | GTATTTTTAAATGGCTACCA+TGG | + | chr5_2:56610862-56610881 | None:intergenic | 30.0% |
| !! | GTGTAGGCAGTATTTTTAAA+TGG | + | chr5_2:56610871-56610890 | None:intergenic | 30.0% |
| AGTAGCAATCTTAGTTATCT+TGG | - | chr5_2:56610983-56611002 | Msa0777560:intron | 30.0% | |
| ! | TTTTCATATCCTCCACAATT+TGG | - | chr5_2:56611035-56611054 | Msa0777560:intron | 30.0% |
| TTTCATATCCTCCACAATTT+GGG | - | chr5_2:56611036-56611055 | Msa0777560:intron | 30.0% | |
| TGTAATGTTATACGTACAGA+TGG | + | chr5_2:56611086-56611105 | None:intergenic | 30.0% | |
| AAAAAAGGCCGTTATCAATT+TGG | + | chr5_2:56611155-56611174 | None:intergenic | 30.0% | |
| ! | ATTTGTTGCTTCTTTCACAT+TGG | - | chr5_2:56611328-56611347 | Msa0777560:CDS | 30.0% |
| AATATTCCAATTTCAAGAGG+TGG | - | chr5_2:56611440-56611459 | Msa0777560:intron | 30.0% | |
| !! | AAAACAATGTACTTTTTGGG+TGG | - | chr5_2:56611968-56611987 | Msa0777560:intron | 30.0% |
| ! | CTAGCTATTTGAAACTTGAA+CGG | - | chr5_2:56612062-56612081 | Msa0777560:intron | 30.0% |
| TATTTGAAAAAATCCGTCTC+CGG | - | chr5_2:56612138-56612157 | Msa0777560:intron | 30.0% | |
| !!! | ATGTTTTATTTTTGTGCCAG+CGG | - | chr5_2:56612480-56612499 | Msa0777560:intron | 30.0% |
| !! | ATTAACAGAGGGGTATATTT+TGG | + | chr5_2:56612605-56612624 | None:intergenic | 30.0% |
| AATAATTGTCGAACAACTTG+TGG | + | chr5_2:56613064-56613083 | None:intergenic | 30.0% | |
| ! | TTGATGATTTAGTCCAATCT+GGG | - | chr5_2:56613240-56613259 | Msa0777560:intron | 30.0% |
| !!! | TCTCAAGTGTTGCTTATTTT+CGG | + | chr5_2:56613373-56613392 | None:intergenic | 30.0% |
| !!! | TGCCATTTTTAATTACGACT+TGG | - | chr5_2:56613412-56613431 | Msa0777560:intron | 30.0% |
| GATGTGCATATAGAGATTAA+GGG | + | chr5_2:56613757-56613776 | None:intergenic | 30.0% | |
| TGATGTGCATATAGAGATTA+AGG | + | chr5_2:56613758-56613777 | None:intergenic | 30.0% | |
| CAGACATATGCATTGAAAAT+AGG | + | chr5_2:56613788-56613807 | None:intergenic | 30.0% | |
| !!! | TTTTTTCCCTCAGAAAGTTT+TGG | - | chr5_2:56613836-56613855 | Msa0777560:intron | 30.0% |
| ! | AATTGAGCTTTGTGAATAAC+GGG | - | chr5_2:56614175-56614194 | Msa0777560:intron | 30.0% |
| !!! | GCTTCTCTTGTACAATTTTT+TGG | - | chr5_2:56614197-56614216 | Msa0777560:intron | 30.0% |
| TTGAACCCTATATCTTATTG+AGG | - | chr5_2:56614292-56614311 | Msa0777560:intron | 30.0% | |
| ATCCTTCAATGATTCTTAGT+AGG | - | chr5_2:56614499-56614518 | Msa0777560:CDS | 30.0% | |
| AGAGAGAGAAAAGAGAAGAA+TGG | - | chr5_2:56609841-56609860 | Msa0777560:three_prime_UTR | 35.0% | |
| AGAAAAGAGAAGAATGGCAA+TGG | - | chr5_2:56609847-56609866 | Msa0777560:three_prime_UTR | 35.0% | |
| TGCAAGTTCTTCACAATCAA+GGG | + | chr5_2:56609909-56609928 | None:intergenic | 35.0% | |
| TTGCAAGTTCTTCACAATCA+AGG | + | chr5_2:56609910-56609929 | None:intergenic | 35.0% | |
| CTCTTCAGAATATCAAATGG+AGG | - | chr5_2:56609963-56609982 | Msa0777560:three_prime_UTR | 35.0% | |
| TGATCCATTAGTACCAAACA+TGG | - | chr5_2:56610246-56610265 | Msa0777560:three_prime_UTR | 35.0% | |
| CTTCAAGGGACCTTATATAT+TGG | - | chr5_2:56610380-56610399 | Msa0777560:intron | 35.0% | |
| GAGCTTAAATTCAGTAGTGT+AGG | - | chr5_2:56610593-56610612 | Msa0777560:intron | 35.0% | |
| !!! | GATTTTTTTACAACCGTCAC+CGG | + | chr5_2:56610813-56610832 | None:intergenic | 35.0% |
| AACAAACAACCAGATGAAGA+TGG | + | chr5_2:56610893-56610912 | None:intergenic | 35.0% | |
| TACAATTCGGACAAATGTCA+TGG | + | chr5_2:56610931-56610950 | None:intergenic | 35.0% | |
| TTCATATCCTCCACAATTTG+GGG | - | chr5_2:56611037-56611056 | Msa0777560:intron | 35.0% | |
| AAGTAAAGATCCCCAAATTG+TGG | + | chr5_2:56611050-56611069 | None:intergenic | 35.0% | |
| GACCTGGATAAGCATAAAAA+AGG | + | chr5_2:56611170-56611189 | None:intergenic | 35.0% | |
| AAGAAGCAACAAATAGACGA+GGG | + | chr5_2:56611322-56611341 | None:intergenic | 35.0% | |
| AAAGAAGCAACAAATAGACG+AGG | + | chr5_2:56611323-56611342 | None:intergenic | 35.0% | |
| CATTAAAACACAAACCTGCA+GGG | + | chr5_2:56611498-56611517 | None:intergenic | 35.0% | |
| !! | TTGACTTGCACATCATACAT+AGG | - | chr5_2:56611619-56611638 | Msa0777560:intron | 35.0% |
| !!! | CTTATTGAGTTTTAGGGGTA+TGG | - | chr5_2:56611729-56611748 | Msa0777560:intron | 35.0% |
| ! | GATTTGAAATTATGCAGGAG+AGG | - | chr5_2:56611814-56611833 | Msa0777560:intron | 35.0% |
| !!! | ATGCAGGAGAGGTTTTATTT+CGG | - | chr5_2:56611825-56611844 | Msa0777560:intron | 35.0% |
| ATACTCACATTATCAGCATC+AGG | + | chr5_2:56611915-56611934 | None:intergenic | 35.0% | |
| ACTTGAACGGTTATTAGTGT+TGG | - | chr5_2:56612075-56612094 | Msa0777560:intron | 35.0% | |
| ! | ATTCCAAATTAGCCTGAATC+CGG | + | chr5_2:56612160-56612179 | None:intergenic | 35.0% |
| ! | CCACATTTCTGAAAACTCAA+TGG | + | chr5_2:56612191-56612210 | None:intergenic | 35.0% |
| ! | CCATTGAGTTTTCAGAAATG+TGG | - | chr5_2:56612188-56612207 | Msa0777560:intron | 35.0% |
| TTTCAGAAATGTGGTGAAAG+AGG | - | chr5_2:56612197-56612216 | Msa0777560:intron | 35.0% | |
| TGAGATAGTAGAGGATATCA+AGG | - | chr5_2:56612224-56612243 | Msa0777560:intron | 35.0% | |
| ! | AGGAACCTTGGAATCTTTTA+TGG | - | chr5_2:56612511-56612530 | Msa0777560:CDS | 35.0% |
| ! | GGAACCTTGGAATCTTTTAT+GGG | - | chr5_2:56612512-56612531 | Msa0777560:CDS | 35.0% |
| AACACCCATAAAAGATTCCA+AGG | + | chr5_2:56612519-56612538 | None:intergenic | 35.0% | |
| TGGGTGTTTCATTTACTTGT+TGG | - | chr5_2:56612531-56612550 | Msa0777560:CDS | 35.0% | |
| GGGTGTTTCATTTACTTGTT+GGG | - | chr5_2:56612532-56612551 | Msa0777560:CDS | 35.0% | |
| CTAGATAAAAACCAAGAGGT+AGG | + | chr5_2:56612572-56612591 | None:intergenic | 35.0% | |
| !! | CTACCTCTTGGTTTTTATCT+AGG | - | chr5_2:56612570-56612589 | Msa0777560:intron | 35.0% |
| ACACCTAGATAAAAACCAAG+AGG | + | chr5_2:56612576-56612595 | None:intergenic | 35.0% | |
| CATAAGAAATGACTGCTACA+GGG | + | chr5_2:56612704-56612723 | None:intergenic | 35.0% | |
| ACATAAGAAATGACTGCTAC+AGG | + | chr5_2:56612705-56612724 | None:intergenic | 35.0% | |
| CTCAGCAAAAACAAATAGTG+AGG | + | chr5_2:56612737-56612756 | None:intergenic | 35.0% | |
| !!! | GTCCGGTTTTTTATTTGTGA+TGG | - | chr5_2:56612779-56612798 | Msa0777560:intron | 35.0% |
| !!! | TATCCGCTAGTTTTATTGTG+TGG | - | chr5_2:56612885-56612904 | Msa0777560:intron | 35.0% |
| AAGCCACACAATAAAACTAG+CGG | + | chr5_2:56612891-56612910 | None:intergenic | 35.0% | |
| GTTGTTCGACAATTATTCAG+TGG | - | chr5_2:56613067-56613086 | Msa0777560:CDS | 35.0% | |
| TTCGACAATTATTCAGTGGT+CGG | - | chr5_2:56613071-56613090 | Msa0777560:CDS | 35.0% | |
| !! | AGTTGTCTAATTTTTGGGAG+TGG | - | chr5_2:56613129-56613148 | Msa0777560:CDS | 35.0% |
| !! | GTTGATGATTTAGTCCAATC+TGG | - | chr5_2:56613239-56613258 | Msa0777560:intron | 35.0% |
| TGATGATTTAGTCCAATCTG+GGG | - | chr5_2:56613241-56613260 | Msa0777560:intron | 35.0% | |
| GTTTACCTGACACTCAATTA+GGG | + | chr5_2:56613270-56613289 | None:intergenic | 35.0% | |
| AGTTTACCTGACACTCAATT+AGG | + | chr5_2:56613271-56613290 | None:intergenic | 35.0% | |
| !!! | AAGTGTTGCTTATTTTCGGT+TGG | + | chr5_2:56613369-56613388 | None:intergenic | 35.0% |
| TTGTGTAAAGAAACAGGGTA+AGG | - | chr5_2:56613445-56613464 | Msa0777560:intron | 35.0% | |
| TGCATACAATGATCATATGG+TGG | - | chr5_2:56613469-56613488 | Msa0777560:intron | 35.0% | |
| GCATACAATGATCATATGGT+GGG | - | chr5_2:56613470-56613489 | Msa0777560:intron | 35.0% | |
| !! | GAAGTTGATGAGATTAAGCT+AGG | + | chr5_2:56613955-56613974 | None:intergenic | 35.0% |
| AGAATCTGTGATCCAAAAGT+AGG | + | chr5_2:56614058-56614077 | None:intergenic | 35.0% | |
| GCTAGACTCAATACTTCAAA+AGG | + | chr5_2:56614117-56614136 | None:intergenic | 35.0% | |
| !! | TTTGAAGTATTGAGTCTAGC+AGG | - | chr5_2:56614117-56614136 | Msa0777560:intron | 35.0% |
| !! | TTGAAGTATTGAGTCTAGCA+GGG | - | chr5_2:56614118-56614137 | Msa0777560:intron | 35.0% |
| AACTGAAACACATTTCCTCA+AGG | - | chr5_2:56614476-56614495 | Msa0777560:CDS | 35.0% | |
| TGCCTACTAAGAATCATTGA+AGG | + | chr5_2:56614504-56614523 | None:intergenic | 35.0% | |
| AGAGACTTGAAACAGTTTCA+GGG | + | chr5_2:56614560-56614579 | None:intergenic | 35.0% | |
| AAGGGCAAGAGAAGAAATTG+AGG | + | chr5_2:56609991-56610010 | None:intergenic | 40.0% | |
| AATTTCTTCTCTTGCCCTTG+TGG | - | chr5_2:56609992-56610011 | Msa0777560:three_prime_UTR | 40.0% | |
| ATGGTGCATAGTGAGACATA+TGG | - | chr5_2:56610212-56610231 | Msa0777560:three_prime_UTR | 40.0% | |
| TGTGCCATGTTTGGTACTAA+TGG | + | chr5_2:56610253-56610272 | None:intergenic | 40.0% | |
| GTATTGTACTGTGCCATGTT+TGG | + | chr5_2:56610262-56610281 | None:intergenic | 40.0% | |
| GAGTGTCATCACTAAAGACT+TGG | + | chr5_2:56610458-56610477 | None:intergenic | 40.0% | |
| AATGATGCAATGCATGTCAG+TGG | - | chr5_2:56610641-56610660 | Msa0777560:intron | 40.0% | |
| ! | TCATCGACAACACTGATTGT+AGG | + | chr5_2:56610713-56610732 | None:intergenic | 40.0% |
| ACAATCAGTGTTGTCGATGA+TGG | - | chr5_2:56610713-56610732 | Msa0777560:intron | 40.0% | |
| ! | TGATGGATGGCAGAATATTG+AGG | - | chr5_2:56610730-56610749 | Msa0777560:intron | 40.0% |
| TAAAGATCCCCAAATTGTGG+AGG | + | chr5_2:56611047-56611066 | None:intergenic | 40.0% | |
| !!! | GGCCTTTTTTATGCTTATCC+AGG | - | chr5_2:56611165-56611184 | Msa0777560:CDS | 40.0% |
| AGAGCTGAATGATGCCAAAA+AGG | + | chr5_2:56611258-56611277 | None:intergenic | 40.0% | |
| AGTTGTTCAAACACTTGAGC+TGG | + | chr5_2:56611281-56611300 | None:intergenic | 40.0% | |
| AATGATCCAGTTGGGAAGAA+AGG | + | chr5_2:56611359-56611378 | None:intergenic | 40.0% | |
| TTCGCTCAAATGATCCAGTT+GGG | + | chr5_2:56611367-56611386 | None:intergenic | 40.0% | |
| ATTCGCTCAAATGATCCAGT+TGG | + | chr5_2:56611368-56611387 | None:intergenic | 40.0% | |
| AACTGGATCATTTGAGCGAA+TGG | - | chr5_2:56611367-56611386 | Msa0777560:CDS | 40.0% | |
| TTTGAGCGAATGGAAGAAGA+AGG | - | chr5_2:56611377-56611396 | Msa0777560:intron | 40.0% | |
| TTGAGCGAATGGAAGAAGAA+GGG | - | chr5_2:56611378-56611397 | Msa0777560:intron | 40.0% | |
| ATTTGACAACATCCGTGCAA+GGG | + | chr5_2:56611423-56611442 | None:intergenic | 40.0% | |
| TATTTGACAACATCCGTGCA+AGG | + | chr5_2:56611424-56611443 | None:intergenic | 40.0% | |
| GCATTAAAACACAAACCTGC+AGG | + | chr5_2:56611499-56611518 | None:intergenic | 40.0% | |
| !! | GTTTTGCCATTGTTTGAGAC+TGG | - | chr5_2:56611855-56611874 | Msa0777560:intron | 40.0% |
| GGAATACCAGTCTCAAACAA+TGG | + | chr5_2:56611864-56611883 | None:intergenic | 40.0% | |
| !!! | GTACTTTTTGGGTGGTTTCT+CGG | - | chr5_2:56611976-56611995 | Msa0777560:intron | 40.0% |
| !!! | TACTTTTTGGGTGGTTTCTC+GGG | - | chr5_2:56611977-56611996 | Msa0777560:intron | 40.0% |
| TGGAGTTGGAATTTGGAAGA+GGG | - | chr5_2:56612019-56612038 | Msa0777560:intron | 40.0% | |
| AGAAAAACACCCAGAAGCTA+CGG | + | chr5_2:56612396-56612415 | None:intergenic | 40.0% | |
| ! | TTCTGGGTGTTTTTCTCTAC+TGG | - | chr5_2:56612400-56612419 | Msa0777560:intron | 40.0% |
| !!! | CTACTGGTTTTTGCTGTTGT+TGG | - | chr5_2:56612416-56612435 | Msa0777560:intron | 40.0% |
| TTTATTGTCTGCCTACCTCT+TGG | - | chr5_2:56612558-56612577 | Msa0777560:CDS | 40.0% | |
| CATGATTGGGTTTGTGCTTA+GGG | - | chr5_2:56612658-56612677 | Msa0777560:intron | 40.0% | |
| ! | TGCTGAGTTGCTGTTAATTC+TGG | - | chr5_2:56612750-56612769 | Msa0777560:intron | 40.0% |
| GTTAATTCTGGTAGACTGTC+CGG | - | chr5_2:56612762-56612781 | Msa0777560:intron | 40.0% | |
| ! | TAAGGTGTTCCGCCTATATA+CGG | - | chr5_2:56612821-56612840 | Msa0777560:intron | 40.0% |
| GTCATTGCATTTCCAGATGA+TGG | - | chr5_2:56613023-56613042 | Msa0777560:CDS | 40.0% | |
| AAGGTGACAAGAGGATAGTT+CGG | - | chr5_2:56613177-56613196 | Msa0777560:CDS | 40.0% | |
| GATGATTTAGTCCAATCTGG+GGG | - | chr5_2:56613242-56613261 | Msa0777560:intron | 40.0% | |
| AGCCTCTTGTGTAAAGAAAC+AGG | - | chr5_2:56613439-56613458 | Msa0777560:intron | 40.0% | |
| GCCTCTTGTGTAAAGAAACA+GGG | - | chr5_2:56613440-56613459 | Msa0777560:intron | 40.0% | |
| ! | ACCCTGTTTCTTTACACAAG+AGG | + | chr5_2:56613444-56613463 | None:intergenic | 40.0% |
| GGCTGCATACAATGATCATA+TGG | - | chr5_2:56613466-56613485 | Msa0777560:intron | 40.0% | |
| CTAAAGCTCCTGCATACATA+GGG | + | chr5_2:56613509-56613528 | None:intergenic | 40.0% | |
| ACTAAAGCTCCTGCATACAT+AGG | + | chr5_2:56613510-56613529 | None:intergenic | 40.0% | |
| !!! | AGAAGGCATTTGCCTACTTT+TGG | - | chr5_2:56614043-56614062 | Msa0777560:intron | 40.0% |
| CTAAGCTCACAAGGATATGA+TGG | + | chr5_2:56614238-56614257 | None:intergenic | 40.0% | |
| TTCAATGTGCTAAGCTCACA+AGG | + | chr5_2:56614247-56614266 | None:intergenic | 40.0% | |
| GGTATGTTGAGTGTTAACAC+TGG | - | chr5_2:56614313-56614332 | Msa0777560:intron | 40.0% | |
| GCATGAGATTTCTCATCAAC+AGG | - | chr5_2:56614370-56614389 | Msa0777560:intron | 40.0% | |
| GAATCATTGAAGGATCCTTG+AGG | + | chr5_2:56614494-56614513 | None:intergenic | 40.0% | |
| CAGAGACTTGAAACAGTTTC+AGG | + | chr5_2:56614561-56614580 | None:intergenic | 40.0% | |
| !! | TCAGTGTTGTCGATGATGGA+TGG | - | chr5_2:56610717-56610736 | Msa0777560:intron | 45.0% |
| GGATGGCAGAATATTGAGGA+AGG | - | chr5_2:56610734-56610753 | Msa0777560:intron | 45.0% | |
| GCTGCAATGGCGTGTTTATA+TGG | + | chr5_2:56610771-56610790 | None:intergenic | 45.0% | |
| CAACCAGATGAAGATGGTGT+AGG | + | chr5_2:56610887-56610906 | None:intergenic | 45.0% | |
| ! | TTATCCAGGTCTTTTGCCGA+TGG | - | chr5_2:56611179-56611198 | Msa0777560:CDS | 45.0% |
| ! | TATCCAGGTCTTTTGCCGAT+GGG | - | chr5_2:56611180-56611199 | Msa0777560:CDS | 45.0% |
| AATAACGCAGAAGAGCTCAG+AGG | - | chr5_2:56611221-56611240 | Msa0777560:CDS | 45.0% | |
| ! | AGGTCAACACGTTGCCTTTT+TGG | - | chr5_2:56611241-56611260 | Msa0777560:intron | 45.0% |
| ! | GTTTTGCCTTTCTTCCCAAC+TGG | - | chr5_2:56611350-56611369 | Msa0777560:CDS | 45.0% |
| TGAGCGAATGGAAGAAGAAG+GGG | - | chr5_2:56611379-56611398 | Msa0777560:intron | 45.0% | |
| ATATGACATTCATGCCCTGC+AGG | - | chr5_2:56611481-56611500 | Msa0777560:intron | 45.0% | |
| !!! | GAGGTTTTATTTCGGAGACG+AGG | - | chr5_2:56611833-56611852 | Msa0777560:intron | 45.0% |
| ! | GTTGTAGCAGACGTTGCTTT+AGG | + | chr5_2:56611890-56611909 | None:intergenic | 45.0% |
| !!! | ACTTTTTGGGTGGTTTCTCG+GGG | - | chr5_2:56611978-56611997 | Msa0777560:intron | 45.0% |
| GTGGAGTTGGAATTTGGAAG+AGG | - | chr5_2:56612018-56612037 | Msa0777560:intron | 45.0% | |
| GGAGTTGGAATTTGGAAGAG+GGG | - | chr5_2:56612020-56612039 | Msa0777560:intron | 45.0% | |
| GAGTTGGAATTTGGAAGAGG+GGG | - | chr5_2:56612021-56612040 | Msa0777560:intron | 45.0% | |
| AGTTGGAATTTGGAAGAGGG+GGG | - | chr5_2:56612022-56612041 | Msa0777560:intron | 45.0% | |
| GTGTTGGAAGAAGAGAGAAG+TGG | - | chr5_2:56612091-56612110 | Msa0777560:intron | 45.0% | |
| GGAAGAAGAGAGAAGTGGTT+TGG | - | chr5_2:56612096-56612115 | Msa0777560:intron | 45.0% | |
| AAAAATCCGTCTCCGGATTC+AGG | - | chr5_2:56612145-56612164 | Msa0777560:intron | 45.0% | |
| ! | AATTAGCCTGAATCCGGAGA+CGG | + | chr5_2:56612154-56612173 | None:intergenic | 45.0% |
| TCTCCGGATTCAGGCTAATT+TGG | - | chr5_2:56612154-56612173 | Msa0777560:intron | 45.0% | |
| CAGAAATGTGGTGAAAGAGG+TGG | - | chr5_2:56612200-56612219 | Msa0777560:intron | 45.0% | |
| AGAGGTGGATGAGATAGTAG+AGG | - | chr5_2:56612215-56612234 | Msa0777560:intron | 45.0% | |
| !! | AGGATATCAAGGTGTTGTCG+TGG | - | chr5_2:56612235-56612254 | Msa0777560:intron | 45.0% |
| !! | AATCCAAGGGAGTGCCTATA+GGG | - | chr5_2:56612315-56612334 | Msa0777560:intron | 45.0% |
| GTACTATTGCCGTAGCTTCT+GGG | - | chr5_2:56612384-56612403 | Msa0777560:intron | 45.0% | |
| !!! | GGTTTTTGCTGTTGTTGGTG+TGG | - | chr5_2:56612421-56612440 | Msa0777560:intron | 45.0% |
| ! | TGTTGGTGTGGCTTCTGTTT+TGG | - | chr5_2:56612433-56612452 | Msa0777560:intron | 45.0% |
| !!! | GTGTGGCTTCTGTTTTGGTT+CGG | - | chr5_2:56612438-56612457 | Msa0777560:intron | 45.0% |
| GCTGAACAGGATTAACAGAG+GGG | + | chr5_2:56612615-56612634 | None:intergenic | 45.0% | |
| CGCTGAACAGGATTAACAGA+GGG | + | chr5_2:56612616-56612635 | None:intergenic | 45.0% | |
| ! | AGGCAAGGGTATGCATGATT+GGG | - | chr5_2:56612645-56612664 | Msa0777560:intron | 45.0% |
| GCATGATTGGGTTTGTGCTT+AGG | - | chr5_2:56612657-56612676 | Msa0777560:intron | 45.0% | |
| TGCTTAGGGAGCAGATTGTT+AGG | - | chr5_2:56612672-56612691 | Msa0777560:intron | 45.0% | |
| TTAGGGAGCAGATTGTTAGG+TGG | - | chr5_2:56612675-56612694 | Msa0777560:intron | 45.0% | |
| ! | CATTTCCAGATGATGGTGCA+TGG | - | chr5_2:56613030-56613049 | Msa0777560:CDS | 45.0% |
| !! | GTCTAATTTTTGGGAGTGGC+AGG | - | chr5_2:56613133-56613152 | Msa0777560:CDS | 45.0% |
| ! | GTATGCACAAAGGTACGTGA+AGG | - | chr5_2:56613158-56613177 | Msa0777560:CDS | 45.0% |
| ! | ATGCAGGAGCTTTAGTGTAC+CGG | - | chr5_2:56613514-56613533 | Msa0777560:intron | 45.0% |
| AAAAATGAAAACGGGCAGCC+CGG | + | chr5_2:56613536-56613555 | None:intergenic | 45.0% | |
| TGGCTGCCAAAACTTTCTGA+GGG | + | chr5_2:56613845-56613864 | None:intergenic | 45.0% | |
| TTGGCTGCCAAAACTTTCTG+AGG | + | chr5_2:56613846-56613865 | None:intergenic | 45.0% | |
| !! | CAGAAAGTTTTGGCAGCCAA+TGG | - | chr5_2:56613846-56613865 | Msa0777560:intron | 45.0% |
| !! | ACTCACTTTTGCTGCACCAT+TGG | + | chr5_2:56613865-56613884 | None:intergenic | 45.0% |
| ! | ATCGCAGCCATGATTGGTTA+GGG | + | chr5_2:56613911-56613930 | None:intergenic | 45.0% |
| ! | AATCGCAGCCATGATTGGTT+AGG | + | chr5_2:56613912-56613931 | None:intergenic | 45.0% |
| CTGCGATTCACTCACAAAGA+TGG | - | chr5_2:56613924-56613943 | Msa0777560:intron | 45.0% | |
| ! | CCAGAGCTTTGACTGTAACT+GGG | + | chr5_2:56614083-56614102 | None:intergenic | 45.0% |
| !! | ATCATAAAAATAATAAATTA+AGG | + | chr5_2:56612997-56613016 | None:intergenic | 5.0% |
| ! | CGACAACACTGATTGTAGGC+AGG | + | chr5_2:56610709-56610728 | None:intergenic | 50.0% |
| AAACACGCCATTGCAGCCTA+TGG | - | chr5_2:56610774-56610793 | Msa0777560:intron | 50.0% | |
| CTATGGAGCTGGCAAATTGC+CGG | - | chr5_2:56610791-56610810 | Msa0777560:intron | 50.0% | |
| CTGCCTACACCATCTTCATC+TGG | - | chr5_2:56610881-56610900 | Msa0777560:intron | 50.0% | |
| AAACCCATCGGCAAAAGACC+TGG | + | chr5_2:56611186-56611205 | None:intergenic | 50.0% | |
| GTTGGGCCACCTCTTGAAAT+TGG | + | chr5_2:56611449-56611468 | None:intergenic | 50.0% | |
| !! | AGCAGACGTTGCTTTAGGAG+AGG | + | chr5_2:56611885-56611904 | None:intergenic | 50.0% |
| GGATGGGTGGAGTTGGAATT+TGG | - | chr5_2:56612012-56612031 | Msa0777560:intron | 50.0% | |
| TCCAACACCAGTCGTAGTAC+AGG | + | chr5_2:56612296-56612315 | None:intergenic | 50.0% | |
| ! | ACGACTGGTGTTGGAATCCA+AGG | - | chr5_2:56612301-56612320 | Msa0777560:intron | 50.0% |
| ! | CGACTGGTGTTGGAATCCAA+GGG | - | chr5_2:56612302-56612321 | Msa0777560:intron | 50.0% |
| !! | GAATCCAAGGGAGTGCCTAT+AGG | - | chr5_2:56612314-56612333 | Msa0777560:intron | 50.0% |
| ! | GAGTGCCTATAGGGTGTCAT+TGG | - | chr5_2:56612324-56612343 | Msa0777560:intron | 50.0% |
| GCTAGCCAATGACACCCTAT+AGG | + | chr5_2:56612332-56612351 | None:intergenic | 50.0% | |
| ! | GTCATTGGCTAGCAAGAGGA+AGG | - | chr5_2:56612339-56612358 | Msa0777560:intron | 50.0% |
| GCTAGCAAGAGGAAGGTTGT+GGG | - | chr5_2:56612346-56612365 | Msa0777560:intron | 50.0% | |
| CGTACTATTGCCGTAGCTTC+TGG | - | chr5_2:56612383-56612402 | Msa0777560:intron | 50.0% | |
| !! | TTGTGCCAGCGGATTGCTTT+AGG | - | chr5_2:56612491-56612510 | Msa0777560:CDS | 50.0% |
| AGGTTCCTAAAGCAATCCGC+TGG | + | chr5_2:56612499-56612518 | None:intergenic | 50.0% | |
| !! | GCGGATTGCTTTAGGAACCT+TGG | - | chr5_2:56612499-56612518 | Msa0777560:CDS | 50.0% |
| GCGCTGAACAGGATTAACAG+AGG | + | chr5_2:56612617-56612636 | None:intergenic | 50.0% | |
| CTGTTAATCCTGTTCAGCGC+TGG | - | chr5_2:56612617-56612636 | Msa0777560:intron | 50.0% | |
| ! | GAGGCAAGGGTATGCATGAT+TGG | - | chr5_2:56612644-56612663 | Msa0777560:intron | 50.0% |
| CAAAAGCCGCCGTATATAGG+CGG | + | chr5_2:56612833-56612852 | None:intergenic | 50.0% | |
| CACCAAAAGCCGCCGTATAT+AGG | + | chr5_2:56612836-56612855 | None:intergenic | 50.0% | |
| GTGGCAGGTTGTATGCACAA+AGG | - | chr5_2:56613148-56613167 | Msa0777560:CDS | 50.0% | |
| AGGTACGTGAAGGTGACAAG+AGG | - | chr5_2:56613168-56613187 | Msa0777560:CDS | 50.0% | |
| CAAGAGGATAGTTCGGCTCA+AGG | - | chr5_2:56613184-56613203 | Msa0777560:CDS | 50.0% | |
| AGGATAGTTCGGCTCAAGGA+AGG | - | chr5_2:56613188-56613207 | Msa0777560:CDS | 50.0% | |
| CTCAAGGAAGGTCATGTCTC+TGG | - | chr5_2:56613200-56613219 | Msa0777560:CDS | 50.0% | |
| CATACATAGGGTTCGGGAAG+GGG | + | chr5_2:56613497-56613516 | None:intergenic | 50.0% | |
| GCATACATAGGGTTCGGGAA+GGG | + | chr5_2:56613498-56613517 | None:intergenic | 50.0% | |
| TGCATACATAGGGTTCGGGA+AGG | + | chr5_2:56613499-56613518 | None:intergenic | 50.0% | |
| TTCCCGAACCCTATGTATGC+AGG | - | chr5_2:56613498-56613517 | Msa0777560:intron | 50.0% | |
| CTCCTGCATACATAGGGTTC+GGG | + | chr5_2:56613503-56613522 | None:intergenic | 50.0% | |
| GCTCCTGCATACATAGGGTT+CGG | + | chr5_2:56613504-56613523 | None:intergenic | 50.0% | |
| ! | TGCAGGAGCTTTAGTGTACC+GGG | - | chr5_2:56613515-56613534 | Msa0777560:intron | 50.0% |
| GTGAGTGCCTATGTCACACA+TGG | - | chr5_2:56613879-56613898 | Msa0777560:intron | 50.0% | |
| GAACACGCCATGTGTGACAT+AGG | + | chr5_2:56613889-56613908 | None:intergenic | 50.0% | |
| GCGTGTTCCCTAACCAATCA+TGG | - | chr5_2:56613901-56613920 | Msa0777560:intron | 50.0% | |
| GAGTGAATCGCAGCCATGAT+TGG | + | chr5_2:56613917-56613936 | None:intergenic | 50.0% | |
| ACTTGCAGAAGCCTCAGAGA+AGG | - | chr5_2:56614026-56614045 | Msa0777560:intron | 50.0% | |
| GTAGGCAAATGCCTTCTCTG+AGG | + | chr5_2:56614040-56614059 | None:intergenic | 50.0% | |
| CCCAGTTACAGTCAAAGCTC+TGG | - | chr5_2:56614080-56614099 | Msa0777560:intron | 50.0% | |
| ! | GCCAGAGCTTTGACTGTAAC+TGG | + | chr5_2:56614084-56614103 | None:intergenic | 50.0% |
| CGGCAATTTGCCAGCTCCAT+AGG | + | chr5_2:56610793-56610812 | None:intergenic | 55.0% | |
| AGCTGGCAAATTGCCGGTGA+CGG | - | chr5_2:56610797-56610816 | Msa0777560:intron | 55.0% | |
| TCCGCCATGCCATTCTTCCA+TGG | - | chr5_2:56610831-56610850 | Msa0777560:intron | 55.0% | |
| GCCATGGAAGAATGGCATGG+CGG | + | chr5_2:56610835-56610854 | None:intergenic | 55.0% | |
| GCCATGCCATTCTTCCATGG+CGG | - | chr5_2:56610834-56610853 | Msa0777560:intron | 55.0% | |
| ACCGCCATGGAAGAATGGCA+TGG | + | chr5_2:56610838-56610857 | None:intergenic | 55.0% | |
| ATGGCACCGCCATGGAAGAA+TGG | + | chr5_2:56610843-56610862 | None:intergenic | 55.0% | |
| ! | ATTCTTCCATGGCGGTGCCA+TGG | - | chr5_2:56610842-56610861 | Msa0777560:intron | 55.0% |
| CAACTGCCTTCACCCTTGCA+CGG | - | chr5_2:56611408-56611427 | Msa0777560:intron | 55.0% | |
| CAACATCCGTGCAAGGGTGA+AGG | + | chr5_2:56611417-56611436 | None:intergenic | 55.0% | |
| ! | GGAAGAGGGGGGAGTTTTCA+CGG | - | chr5_2:56612033-56612052 | Msa0777560:intron | 55.0% |
| !! | TCAAGGTGTTGTCGTGGCGA+TGG | - | chr5_2:56612241-56612260 | Msa0777560:intron | 55.0% |
| CAGTCGTAGTACAGGCAAGG+TGG | + | chr5_2:56612288-56612307 | None:intergenic | 55.0% | |
| CACCTTGCCTGTACTACGAC+TGG | - | chr5_2:56612286-56612305 | Msa0777560:intron | 55.0% | |
| CACCAGTCGTAGTACAGGCA+AGG | + | chr5_2:56612291-56612310 | None:intergenic | 55.0% | |
| GCCTGTACTACGACTGGTGT+TGG | - | chr5_2:56612292-56612311 | Msa0777560:intron | 55.0% | |
| ACACCCTATAGGCACTCCCT+TGG | + | chr5_2:56612321-56612340 | None:intergenic | 55.0% | |
| !! | GGGTGTCATTGGCTAGCAAG+AGG | - | chr5_2:56612335-56612354 | Msa0777560:intron | 55.0% |
| GGCTAGCAAGAGGAAGGTTG+TGG | - | chr5_2:56612345-56612364 | Msa0777560:intron | 55.0% | |
| AGCAAGAGGAAGGTTGTGGG+AGG | - | chr5_2:56612349-56612368 | Msa0777560:intron | 55.0% | |
| AAGAGGAAGGTTGTGGGAGG+TGG | - | chr5_2:56612352-56612371 | Msa0777560:intron | 55.0% | |
| AGAGGAAGGTTGTGGGAGGT+GGG | - | chr5_2:56612353-56612372 | Msa0777560:intron | 55.0% | |
| !!! | GGCTTCTGTTTTGGTTCGGC+TGG | - | chr5_2:56612442-56612461 | Msa0777560:intron | 55.0% |
| GGTGTTCCGCCTATATACGG+CGG | - | chr5_2:56612824-56612843 | Msa0777560:intron | 55.0% | |
| ! | CGCCTATATACGGCGGCTTT+TGG | - | chr5_2:56612831-56612850 | Msa0777560:intron | 55.0% |
| CGCTTCCATGCACCATCATC+TGG | + | chr5_2:56613038-56613057 | None:intergenic | 55.0% | |
| TCAGTGGTCGGTCTCCCATA+AGG | - | chr5_2:56613083-56613102 | Msa0777560:CDS | 55.0% | |
| ! | CAATTAGGGTGCCCCCAGAT+TGG | + | chr5_2:56613256-56613275 | None:intergenic | 55.0% |
| GGGCACCCTAATTGAGTGTC+AGG | - | chr5_2:56613262-56613281 | Msa0777560:intron | 55.0% | |
| GCCATTGCAGCCTATGGAGC+TGG | - | chr5_2:56610780-56610799 | Msa0777560:intron | 60.0% | |
| GCCAGCTCCATAGGCTGCAA+TGG | + | chr5_2:56610784-56610803 | None:intergenic | 60.0% | |
| GGTGGTTTCTCGGGGTCGTT+GGG | - | chr5_2:56611986-56612005 | Msa0777560:intron | 60.0% | |
| GTGGTTTCTCGGGGTCGTTG+GGG | - | chr5_2:56611987-56612006 | Msa0777560:intron | 60.0% | |
| TGGTTTCTCGGGGTCGTTGG+GGG | - | chr5_2:56611988-56612007 | Msa0777560:intron | 60.0% | |
| GAGGAAGGTTGTGGGAGGTG+GGG | - | chr5_2:56612354-56612373 | Msa0777560:intron | 60.0% | |
| AGGAAGGTTGTGGGAGGTGG+GGG | - | chr5_2:56612355-56612374 | Msa0777560:intron | 60.0% | |
| ! | CCTCACTACCAGCGCTGAAC+AGG | + | chr5_2:56612628-56612647 | None:intergenic | 60.0% |
| !! | CCTGTTCAGCGCTGGTAGTG+AGG | - | chr5_2:56612625-56612644 | Msa0777560:intron | 60.0% |
| !! | TCAGCGCTGGTAGTGAGGCA+AGG | - | chr5_2:56612630-56612649 | Msa0777560:intron | 60.0% |
| !! | CAGCGCTGGTAGTGAGGCAA+GGG | - | chr5_2:56612631-56612650 | Msa0777560:intron | 60.0% |
| TGGCTACCATGGCACCGCCA+TGG | + | chr5_2:56610851-56610870 | None:intergenic | 65.0% | |
| GGGTGGTTTCTCGGGGTCGT+TGG | - | chr5_2:56611985-56612004 | Msa0777560:intron | 65.0% | |
| TTTCTCGGGGTCGTTGGGGG+AGG | - | chr5_2:56611991-56612010 | Msa0777560:intron | 65.0% | |
| TGGGGGAGGATGGGTGGAGT+TGG | - | chr5_2:56612005-56612024 | Msa0777560:intron | 65.0% | |
| TCGGGGTCGTTGGGGGAGGA+TGG | - | chr5_2:56611995-56612014 | Msa0777560:intron | 70.0% | |
| CGGGGTCGTTGGGGGAGGAT+GGG | - | chr5_2:56611996-56612015 | Msa0777560:intron | 70.0% | |
| GGTCGTTGGGGGAGGATGGG+TGG | - | chr5_2:56611999-56612018 | Msa0777560:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 56609825 | 56614589 | 56609825 | ID=Msa0777560;Name=Msa0777560 |
| chr5_2 | mRNA | 56609825 | 56614589 | 56609825 | ID=Msa0777560-mRNA-1;Parent=Msa0777560;Name=Msa0777560-mRNA-1;_AED=0.07;_eAED=0.07;_QI=35|0.8|1|1|1|1|6|460|276 |
| chr5_2 | exon | 56609825 | 56610380 | 56609825 | ID=Msa0777560-mRNA-1:exon:16769;Parent=Msa0777560-mRNA-1 |
| chr5_2 | exon | 56611131 | 56611259 | 56611131 | ID=Msa0777560-mRNA-1:exon:16768;Parent=Msa0777560-mRNA-1 |
| chr5_2 | exon | 56611326 | 56611394 | 56611326 | ID=Msa0777560-mRNA-1:exon:16767;Parent=Msa0777560-mRNA-1 |
| chr5_2 | exon | 56612488 | 56612583 | 56612488 | ID=Msa0777560-mRNA-1:exon:16766;Parent=Msa0777560-mRNA-1 |
| chr5_2 | exon | 56612912 | 56613227 | 56612912 | ID=Msa0777560-mRNA-1:exon:16765;Parent=Msa0777560-mRNA-1 |
| chr5_2 | exon | 56614430 | 56614589 | 56614430 | ID=Msa0777560-mRNA-1:exon:16764;Parent=Msa0777560-mRNA-1 |
| chr5_2 | five_prime_UTR | 56614555 | 56614589 | 56614555 | ID=Msa0777560-mRNA-1:five_prime_utr;Parent=Msa0777560-mRNA-1 |
| chr5_2 | CDS | 56614430 | 56614554 | 56614430 | ID=Msa0777560-mRNA-1:cds;Parent=Msa0777560-mRNA-1 |
| chr5_2 | CDS | 56612912 | 56613227 | 56612912 | ID=Msa0777560-mRNA-1:cds;Parent=Msa0777560-mRNA-1 |
| chr5_2 | CDS | 56612488 | 56612583 | 56612488 | ID=Msa0777560-mRNA-1:cds;Parent=Msa0777560-mRNA-1 |
| chr5_2 | CDS | 56611326 | 56611394 | 56611326 | ID=Msa0777560-mRNA-1:cds;Parent=Msa0777560-mRNA-1 |
| chr5_2 | CDS | 56611131 | 56611259 | 56611131 | ID=Msa0777560-mRNA-1:cds;Parent=Msa0777560-mRNA-1 |
| chr5_2 | CDS | 56610285 | 56610380 | 56610285 | ID=Msa0777560-mRNA-1:cds;Parent=Msa0777560-mRNA-1 |
| chr5_2 | three_prime_UTR | 56609825 | 56610284 | 56609825 | ID=Msa0777560-mRNA-1:three_prime_utr;Parent=Msa0777560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
