Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737090 | RHN75806.1 | 76.712 | 146 | 27 | 1 | 135 | 280 | 183 | 321 | 1.63e-57 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737090 | A0A396JC05 | 76.712 | 146 | 27 | 1 | 135 | 280 | 183 | 321 | 7.81e-58 | 201 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0737080 | Msa0737090 | 0.807123 | 5.893441e-50 | -8.615850e-47 |
| Msa0737090 | Msa0778680 | 0.860315 | 2.251005e-63 | -8.615850e-47 |
| Msa0737090 | Msa0778690 | 0.871479 | 6.621488e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737090 | MtrunA17_Chr2g0325241 | 76.712 | 146 | 27 | 1 | 135 | 280 | 183 | 321 | 1.50e-61 | 201 |
| Msa0737090 | MtrunA17_Chr6g0471251 | 62.346 | 162 | 28 | 1 | 1 | 129 | 503 | 664 | 1.66e-53 | 186 |
| Msa0737090 | MtrunA17_Chr6g0471251 | 37.059 | 170 | 89 | 2 | 136 | 287 | 308 | 477 | 4.62e-14 | 72.8 |
| Msa0737090 | MtrunA17_Chr2g0325661 | 66.667 | 162 | 21 | 1 | 1 | 129 | 612 | 773 | 1.59e-47 | 171 |
| Msa0737090 | MtrunA17_Chr2g0325661 | 40.940 | 149 | 84 | 1 | 137 | 281 | 327 | 475 | 4.81e-17 | 82.0 |
| Msa0737090 | MtrunA17_Chr2g0325661 | 44.828 | 145 | 63 | 2 | 143 | 287 | 445 | 572 | 4.87e-16 | 79.0 |
| Msa0737090 | MtrunA17_Chr2g0325661 | 37.415 | 147 | 82 | 2 | 137 | 283 | 271 | 407 | 5.78e-12 | 66.6 |
| Msa0737090 | MtrunA17_Chr2g0325661 | 36.800 | 125 | 65 | 1 | 137 | 247 | 474 | 598 | 2.93e-11 | 64.3 |
| Msa0737090 | MtrunA17_Chr2g0325811 | 55.488 | 164 | 59 | 1 | 137 | 286 | 381 | 544 | 1.26e-41 | 154 |
| Msa0737090 | MtrunA17_Chr2g0325811 | 45.679 | 162 | 54 | 3 | 1 | 128 | 575 | 736 | 1.78e-30 | 121 |
| Msa0737090 | MtrunA17_Chr2g0325711 | 51.075 | 186 | 60 | 3 | 135 | 289 | 349 | 534 | 1.31e-40 | 150 |
| Msa0737090 | MtrunA17_Chr2g0325711 | 42.500 | 160 | 59 | 2 | 3 | 129 | 575 | 734 | 2.28e-25 | 106 |
| Msa0737090 | MtrunA17_Chr2g0325351 | 57.669 | 163 | 36 | 1 | 1 | 130 | 424 | 586 | 4.29e-38 | 143 |
| Msa0737090 | MtrunA17_Chr2g0325351 | 46.626 | 163 | 72 | 2 | 140 | 287 | 230 | 392 | 2.03e-22 | 97.8 |
| Msa0737090 | MtrunA17_Chr2g0325351 | 42.623 | 122 | 66 | 1 | 138 | 255 | 295 | 416 | 2.65e-11 | 64.3 |
| Msa0737090 | MtrunA17_Chr2g0325221 | 46.759 | 216 | 82 | 3 | 99 | 286 | 352 | 562 | 2.31e-37 | 141 |
| Msa0737090 | MtrunA17_Chr5g0434761 | 51.852 | 162 | 45 | 1 | 1 | 129 | 1 | 162 | 7.79e-37 | 132 |
| Msa0737090 | MtrunA17_Chr2g0325621 | 53.704 | 162 | 36 | 2 | 1 | 129 | 403 | 558 | 8.48e-35 | 133 |
| Msa0737090 | MtrunA17_Chr2g0325621 | 42.384 | 151 | 77 | 2 | 137 | 287 | 223 | 363 | 1.31e-15 | 77.4 |
| Msa0737090 | MtrunA17_Chr2g0325621 | 40.625 | 128 | 66 | 2 | 138 | 258 | 266 | 390 | 1.08e-14 | 74.7 |
| Msa0737090 | MtrunA17_Chr5g0416271 | 46.108 | 167 | 43 | 2 | 1 | 134 | 335 | 487 | 6.05e-34 | 129 |
| Msa0737090 | MtrunA17_Chr5g0416271 | 39.098 | 133 | 57 | 2 | 143 | 261 | 195 | 317 | 9.68e-16 | 77.8 |
| Msa0737090 | MtrunA17_Chr5g0416271 | 33.113 | 151 | 97 | 1 | 138 | 284 | 176 | 326 | 4.11e-12 | 66.6 |
| Msa0737090 | MtrunA17_Chr2g0280141 | 48.447 | 161 | 50 | 2 | 2 | 129 | 555 | 715 | 9.86e-34 | 130 |
| Msa0737090 | MtrunA17_Chr2g0280141 | 44.444 | 126 | 67 | 1 | 137 | 262 | 338 | 460 | 5.85e-17 | 81.6 |
| Msa0737090 | MtrunA17_Chr2g0280141 | 40.268 | 149 | 85 | 2 | 138 | 286 | 353 | 497 | 3.64e-16 | 79.3 |
| Msa0737090 | MtrunA17_Chr2g0280141 | 35.071 | 211 | 101 | 3 | 112 | 286 | 225 | 435 | 6.09e-16 | 78.6 |
| Msa0737090 | MtrunA17_Chr2g0325231 | 50.311 | 161 | 38 | 3 | 2 | 129 | 718 | 869 | 4.10e-33 | 129 |
| Msa0737090 | MtrunA17_Chr2g0325231 | 44.693 | 179 | 71 | 2 | 137 | 287 | 513 | 691 | 2.87e-26 | 109 |
| Msa0737090 | MtrunA17_Chr2g0325231 | 40.936 | 171 | 94 | 2 | 124 | 287 | 455 | 625 | 2.27e-22 | 97.8 |
| Msa0737090 | MtrunA17_Chr2g0325231 | 37.288 | 177 | 93 | 2 | 129 | 287 | 228 | 404 | 1.03e-18 | 87.0 |
| Msa0737090 | MtrunA17_Chr2g0325231 | 38.272 | 162 | 89 | 3 | 137 | 287 | 278 | 439 | 1.40e-15 | 77.4 |
| Msa0737090 | MtrunA17_Chr2g0325231 | 32.432 | 222 | 79 | 2 | 137 | 287 | 334 | 555 | 3.17e-15 | 76.6 |
| Msa0737090 | MtrunA17_Chr2g0325611 | 52.469 | 162 | 44 | 1 | 1 | 129 | 326 | 487 | 1.47e-32 | 127 |
| Msa0737090 | MtrunA17_Chr2g0325611 | 45.033 | 151 | 70 | 3 | 140 | 286 | 144 | 285 | 7.04e-20 | 90.1 |
| Msa0737090 | MtrunA17_Chr2g0325611 | 44.853 | 136 | 65 | 2 | 134 | 262 | 178 | 310 | 6.53e-19 | 87.4 |
| Msa0737090 | MtrunA17_Chr2g0333341 | 52.795 | 161 | 35 | 2 | 1 | 128 | 455 | 607 | 7.80e-32 | 125 |
| Msa0737090 | MtrunA17_Chr2g0333341 | 34.177 | 158 | 89 | 4 | 130 | 287 | 303 | 445 | 4.71e-12 | 66.6 |
| Msa0737090 | MtrunA17_Chr2g0333341 | 40.000 | 110 | 63 | 2 | 138 | 245 | 349 | 457 | 1.53e-11 | 65.1 |
| Msa0737090 | MtrunA17_Chr2g0325631 | 54.938 | 162 | 40 | 1 | 1 | 129 | 1 | 162 | 3.91e-31 | 117 |
| Msa0737090 | MtrunA17_Chr2g0325321 | 53.012 | 166 | 45 | 2 | 1 | 133 | 597 | 762 | 1.23e-28 | 116 |
| Msa0737090 | MtrunA17_Chr2g0325321 | 41.799 | 189 | 95 | 3 | 99 | 287 | 405 | 578 | 2.92e-21 | 94.4 |
| Msa0737090 | MtrunA17_Chr2g0325321 | 47.191 | 89 | 47 | 0 | 137 | 225 | 494 | 582 | 2.71e-13 | 70.5 |
| Msa0737090 | MtrunA17_Chr2g0325321 | 30.808 | 198 | 91 | 2 | 137 | 288 | 312 | 509 | 1.59e-12 | 68.2 |
| Msa0737090 | MtrunA17_Chr2g0325321 | 32.995 | 197 | 97 | 4 | 126 | 287 | 242 | 438 | 7.24e-11 | 63.2 |
| Msa0737090 | MtrunA17_Chr2g0325331 | 51.316 | 152 | 41 | 1 | 1 | 119 | 1 | 152 | 4.62e-28 | 107 |
| Msa0737090 | MtrunA17_Chr2g0325861 | 43.478 | 161 | 50 | 2 | 2 | 129 | 667 | 819 | 1.70e-27 | 112 |
| Msa0737090 | MtrunA17_Chr2g0325861 | 44.966 | 149 | 72 | 1 | 138 | 286 | 452 | 590 | 1.72e-20 | 92.0 |
| Msa0737090 | MtrunA17_Chr2g0325861 | 40.132 | 152 | 89 | 1 | 137 | 286 | 507 | 658 | 1.20e-18 | 86.7 |
| Msa0737090 | MtrunA17_Chr2g0325861 | 39.412 | 170 | 81 | 3 | 136 | 286 | 478 | 644 | 2.79e-17 | 82.8 |
| Msa0737090 | MtrunA17_Chr2g0325861 | 41.221 | 131 | 59 | 3 | 133 | 251 | 545 | 669 | 2.14e-12 | 67.8 |
| Msa0737090 | MtrunA17_Chr2g0332951 | 42.353 | 170 | 47 | 4 | 1 | 133 | 56 | 211 | 3.22e-27 | 105 |
| Msa0737090 | MtrunA17_Chr2g0325771 | 52.381 | 168 | 37 | 3 | 1 | 133 | 17 | 176 | 5.58e-27 | 104 |
| Msa0737090 | MtrunA17_Chr2g0325701 | 49.693 | 163 | 48 | 3 | 1 | 130 | 429 | 590 | 1.29e-26 | 110 |
| Msa0737090 | MtrunA17_Chr2g0325701 | 46.104 | 154 | 73 | 1 | 134 | 287 | 246 | 389 | 6.94e-25 | 104 |
| Msa0737090 | MtrunA17_Chr2g0325701 | 38.571 | 140 | 79 | 2 | 138 | 270 | 292 | 431 | 5.18e-15 | 75.5 |
| Msa0737090 | MtrunA17_Chr3g0140591 | 45.679 | 162 | 56 | 1 | 2 | 131 | 10 | 171 | 3.45e-26 | 102 |
| Msa0737090 | MtrunA17_Chr2g0325361 | 50.932 | 161 | 47 | 1 | 1 | 129 | 814 | 974 | 4.35e-26 | 108 |
| Msa0737090 | MtrunA17_Chr2g0325361 | 45.324 | 139 | 72 | 1 | 135 | 269 | 576 | 714 | 3.85e-24 | 103 |
| Msa0737090 | MtrunA17_Chr2g0325361 | 39.344 | 183 | 79 | 2 | 137 | 287 | 480 | 662 | 5.66e-24 | 102 |
| Msa0737090 | MtrunA17_Chr2g0325361 | 40.782 | 179 | 80 | 2 | 137 | 290 | 620 | 797 | 7.25e-23 | 99.4 |
| Msa0737090 | MtrunA17_Chr2g0325361 | 41.401 | 157 | 87 | 2 | 135 | 287 | 451 | 606 | 2.00e-19 | 89.0 |
| Msa0737090 | MtrunA17_Chr2g0325361 | 34.328 | 201 | 82 | 2 | 137 | 287 | 322 | 522 | 1.50e-18 | 86.7 |
| Msa0737090 | MtrunA17_Chr2g0325361 | 36.810 | 163 | 90 | 2 | 124 | 283 | 250 | 402 | 9.65e-17 | 81.3 |
| Msa0737090 | MtrunA17_Chr2g0325361 | 36.709 | 158 | 92 | 2 | 137 | 286 | 406 | 563 | 1.05e-14 | 75.1 |
| Msa0737090 | MtrunA17_Chr2g0325691 | 41.420 | 169 | 80 | 2 | 137 | 287 | 322 | 489 | 9.25e-23 | 99.0 |
| Msa0737090 | MtrunA17_Chr2g0325691 | 40.331 | 181 | 94 | 3 | 124 | 301 | 532 | 701 | 3.27e-21 | 94.4 |
| Msa0737090 | MtrunA17_Chr2g0325691 | 41.772 | 158 | 74 | 2 | 148 | 287 | 277 | 434 | 4.60e-19 | 87.8 |
| Msa0737090 | MtrunA17_Chr2g0325691 | 37.853 | 177 | 92 | 2 | 129 | 287 | 230 | 406 | 8.47e-18 | 84.0 |
| Msa0737090 | MtrunA17_Chr2g0325281 | 42.328 | 189 | 94 | 3 | 99 | 287 | 405 | 578 | 9.24e-22 | 95.9 |
| Msa0737090 | MtrunA17_Chr2g0325281 | 36.813 | 182 | 94 | 3 | 126 | 286 | 242 | 423 | 3.28e-17 | 82.4 |
| Msa0737090 | MtrunA17_Chr2g0325281 | 36.129 | 155 | 95 | 1 | 138 | 288 | 355 | 509 | 3.44e-14 | 73.2 |
| Msa0737090 | MtrunA17_Chr7g0235901 | 41.040 | 173 | 84 | 2 | 129 | 283 | 139 | 311 | 2.08e-21 | 92.4 |
| Msa0737090 | MtrunA17_Chr2g0325211 | 43.030 | 165 | 52 | 3 | 137 | 287 | 9 | 145 | 2.27e-19 | 84.3 |
| Msa0737090 | MtrunA17_Chr2g0325761 | 41.477 | 176 | 78 | 2 | 137 | 287 | 392 | 567 | 2.76e-18 | 85.5 |
| Msa0737090 | MtrunA17_Chr2g0325761 | 40.268 | 149 | 85 | 1 | 137 | 281 | 322 | 470 | 6.35e-16 | 78.6 |
| Msa0737090 | MtrunA17_Chr2g0325761 | 34.459 | 148 | 93 | 1 | 140 | 283 | 269 | 416 | 6.37e-12 | 66.2 |
| Msa0737090 | MtrunA17_Chr2g0325761 | 34.591 | 159 | 93 | 2 | 137 | 284 | 434 | 592 | 6.31e-11 | 63.2 |
| Msa0737090 | MtrunA17_Chr2g0325641 | 41.139 | 158 | 83 | 2 | 137 | 287 | 129 | 283 | 3.04e-18 | 84.0 |
| Msa0737090 | MtrunA17_Chr2g0325641 | 35.503 | 169 | 84 | 1 | 143 | 286 | 51 | 219 | 1.58e-13 | 70.1 |
| Msa0737090 | MtrunA17_Chr2g0325641 | 38.462 | 143 | 70 | 2 | 149 | 287 | 1 | 129 | 8.78e-12 | 65.1 |
| Msa0737090 | MtrunA17_Chr2g0325651 | 39.103 | 156 | 87 | 2 | 130 | 285 | 222 | 369 | 4.28e-18 | 84.0 |
| Msa0737090 | MtrunA17_Chr2g0325651 | 39.130 | 161 | 89 | 3 | 126 | 283 | 224 | 378 | 4.14e-16 | 78.2 |
| Msa0737090 | MtrunA17_Chr2g0325791 | 47.312 | 93 | 49 | 0 | 144 | 236 | 63 | 155 | 3.56e-17 | 80.9 |
| Msa0737090 | MtrunA17_Chr2g0332961 | 44.262 | 122 | 34 | 1 | 15 | 102 | 232 | 353 | 4.00e-17 | 80.9 |
| Msa0737090 | MtrunA17_Chr5g0434751 | 38.251 | 183 | 81 | 2 | 137 | 287 | 3 | 185 | 5.34e-17 | 79.7 |
| Msa0737090 | MtrunA17_Chr5g0434751 | 39.474 | 190 | 89 | 3 | 137 | 301 | 73 | 261 | 7.42e-16 | 76.6 |
| Msa0737090 | MtrunA17_Chr2g0325291 | 44.366 | 142 | 46 | 2 | 21 | 129 | 7 | 148 | 1.01e-16 | 77.8 |
| Msa0737090 | MtrunA17_Chr2g0325751 | 48.571 | 105 | 43 | 2 | 187 | 287 | 3 | 100 | 1.68e-14 | 70.1 |
| Msa0737090 | MtrunA17_Chr2g0325751 | 38.346 | 133 | 67 | 3 | 126 | 254 | 2 | 123 | 1.59e-11 | 61.6 |
| Msa0737090 | MtrunA17_Chr7g0235921 | 70.833 | 72 | 20 | 1 | 58 | 129 | 13 | 83 | 1.76e-12 | 63.2 |
| Msa0737090 | MtrunA17_Chr2g0325261 | 37.615 | 109 | 68 | 0 | 125 | 233 | 198 | 306 | 5.66e-12 | 65.5 |
| Msa0737090 | MtrunA17_Chr2g0325341 | 37.615 | 109 | 68 | 0 | 125 | 233 | 198 | 306 | 5.66e-12 | 65.5 |
| Msa0737090 | MtrunA17_Chr2g0325721 | 32.240 | 183 | 92 | 2 | 137 | 287 | 289 | 471 | 1.00e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 62 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCAAACTGCTTCTCTTT+TGG | 0.174730 | 5_1:-54041262 | None:intergenic |
| GGTGTTACAAATATAGTTTC+TGG | 0.214668 | 5_1:+54040376 | Msa0737090:CDS |
| TCTTTCGATTTCTTGTAATT+TGG | 0.283246 | 5_1:-54041364 | None:intergenic |
| GAAAATTCTTCGCCAGTTCT+TGG | 0.286363 | 5_1:+54040235 | Msa0737090:CDS |
| TTAACAAAGGAGGAGTTTAA+AGG | 0.299310 | 5_1:+54041064 | Msa0737090:CDS |
| TCAAAAGAGAGGAAATTTAA+AGG | 0.301980 | 5_1:+54040896 | Msa0737090:CDS |
| CTGATTTCAAATCTTCCATT+TGG | 0.306760 | 5_1:-54041159 | None:intergenic |
| TTCTTACACAGTGGAGTAAT+GGG | 0.321561 | 5_1:-54040067 | None:intergenic |
| TGTTCTCACTGTGGTGTTAT+TGG | 0.328931 | 5_1:+54041307 | Msa0737090:CDS |
| CTGATTTGAGCTCCTTCACT+TGG | 0.334686 | 5_1:-54040961 | None:intergenic |
| TTTCGATGAAGGTGAAGTTT+TGG | 0.365574 | 5_1:+54040297 | Msa0737090:CDS |
| AATCTTGAAGCATTTGCCTT+TGG | 0.384716 | 5_1:-54041335 | None:intergenic |
| CAATTAAGTTCAACCATTGA+TGG | 0.389152 | 5_1:+54039920 | Msa0737090:CDS |
| CCAAAAGAGAAGCAGTTTGA+TGG | 0.395710 | 5_1:+54041262 | Msa0737090:CDS |
| AGACAAACATTATGAAGAAT+GGG | 0.403930 | 5_1:+54041183 | Msa0737090:CDS |
| TATGGAGCTGTTTGAGACCT+TGG | 0.417482 | 5_1:+54040354 | Msa0737090:CDS |
| ATGGAGCTGTTTGAGACCTT+GGG | 0.419434 | 5_1:+54040355 | Msa0737090:CDS |
| CTGCAAACTTGTTCCATCAA+TGG | 0.424369 | 5_1:-54039933 | None:intergenic |
| CGACAGCAGGGTGAAGGAGC+TGG | 0.429403 | 5_1:+54040871 | Msa0737090:CDS |
| AAGACAAACATTATGAAGAA+TGG | 0.431438 | 5_1:+54041182 | Msa0737090:CDS |
| CTTCTTACACAGTGGAGTAA+TGG | 0.436658 | 5_1:-54040068 | None:intergenic |
| ACACCACAGTGAGAACAAAT+TGG | 0.444443 | 5_1:-54041301 | None:intergenic |
| TTGCCGACTTCTTTCGATGA+AGG | 0.444646 | 5_1:+54040286 | Msa0737090:CDS |
| TCAGAAAAGAAGCAACTTCA+AGG | 0.449972 | 5_1:+54040980 | Msa0737090:CDS |
| AAGAGAGGAAATTTAAAGGA+TGG | 0.455404 | 5_1:+54040900 | Msa0737090:CDS |
| AGCAGCAGAAAACCAAGAAC+TGG | 0.465884 | 5_1:-54040247 | None:intergenic |
| TGATGGAACAAGTTTGCAGT+TGG | 0.496915 | 5_1:+54039937 | Msa0737090:CDS |
| AAAAGAAGCATTTCGACAGC+AGG | 0.499224 | 5_1:+54040858 | Msa0737090:CDS |
| TCTCCGATCAAAAGAAAAGT+TGG | 0.518536 | 5_1:+54041015 | Msa0737090:CDS |
| AAAGGAATTTGAATCAAAAG+AGG | 0.518856 | 5_1:+54041093 | Msa0737090:CDS |
| TTGATTCAAATTCCTTTACT+CGG | 0.519298 | 5_1:-54041087 | None:intergenic |
| GGAGTTTAAAGGCCGAGTAA+AGG | 0.525910 | 5_1:+54041075 | Msa0737090:CDS |
| TTAATTGAAACTCCTTCACT+TGG | 0.533006 | 5_1:-54041045 | None:intergenic |
| CAGAAAAGAAGCAACTTCAA+GGG | 0.545868 | 5_1:+54040981 | Msa0737090:CDS |
| AGAGAGGAAATTTAAAGGAT+GGG | 0.546795 | 5_1:+54040901 | Msa0737090:CDS |
| GCATTTCGACAGCAGGGTGA+AGG | 0.547990 | 5_1:+54040865 | Msa0737090:CDS |
| TGCTCGAATGCAGAAGCTCA+AGG | 0.548342 | 5_1:+54041126 | Msa0737090:CDS |
| TGCTCAGCACAAGACAGCTA+TGG | 0.554357 | 5_1:+54040336 | Msa0737090:CDS |
| GGAATTTGAATCAAAAGAGG+AGG | 0.563905 | 5_1:+54041096 | Msa0737090:CDS |
| TTAAAAGAGGAGCAATTCAA+AGG | 0.570735 | 5_1:+54040938 | Msa0737090:CDS |
| GAATTTGAATCAAAAGAGGA+GGG | 0.572816 | 5_1:+54041097 | Msa0737090:CDS |
| GCAACTTCAAGGGGAACTGA+AGG | 0.574091 | 5_1:+54040991 | Msa0737090:CDS |
| GGAGTTTCAATTAACAAAGG+AGG | 0.575218 | 5_1:+54041054 | Msa0737090:CDS |
| GAAGCAGTTAGAATTAAAAG+AGG | 0.582354 | 5_1:+54040925 | Msa0737090:CDS |
| GCAATTCAAAGGCCAAGTGA+AGG | 0.587046 | 5_1:+54040949 | Msa0737090:CDS |
| GCAGTTTGATGGAGGCGTGA+AGG | 0.592056 | 5_1:+54041273 | Msa0737090:CDS |
| GGTGTTATTGGTCATTCCAA+AGG | 0.593889 | 5_1:+54041319 | Msa0737090:CDS |
| GAAGGAGTTTCAATTAACAA+AGG | 0.599913 | 5_1:+54041051 | Msa0737090:CDS |
| GACAAACATTATGAAGAATG+GGG | 0.606927 | 5_1:+54041184 | Msa0737090:CDS |
| AACTATATTTGTAACACCCA+AGG | 0.610599 | 5_1:-54040371 | None:intergenic |
| AGAAAAGAAGCAACTTCAAG+GGG | 0.610826 | 5_1:+54040982 | Msa0737090:CDS |
| GCTCGAATGCAGAAGCTCAA+GGG | 0.619664 | 5_1:+54041127 | Msa0737090:CDS |
| GTTGGTTGAAGTCCAAGTGA+AGG | 0.619922 | 5_1:+54041033 | Msa0737090:CDS |
| TCACCTTCATCGAAAGAAGT+CGG | 0.625031 | 5_1:-54040289 | None:intergenic |
| TATGTTCATAGTTGATGTGA+AGG | 0.632347 | 5_1:+54041231 | Msa0737090:CDS |
| AAAGAGAAGCAGTTTGATGG+AGG | 0.637863 | 5_1:+54041265 | Msa0737090:CDS |
| TCTTACACAGTGGAGTAATG+GGG | 0.646699 | 5_1:-54040066 | None:intergenic |
| AAAGAAGCATTTCGACAGCA+GGG | 0.651869 | 5_1:+54040859 | Msa0737090:CDS |
| GATGGATCTGATGATTCTAG+CGG | 0.657984 | 5_1:-54040016 | None:intergenic |
| ACAAACATTATGAAGAATGG+GGG | 0.666481 | 5_1:+54041185 | Msa0737090:CDS |
| CGACCAATTTGTTCTCACTG+TGG | 0.674189 | 5_1:+54041298 | Msa0737090:CDS |
| AGGAGCTGGATTCAAAAGAG+AGG | 0.682954 | 5_1:+54040885 | Msa0737090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATCATATGATTTATAAA+AGG | + | chr5_1:54040471-54040490 | Msa0737090:intron | 10.0% |
| !! | TATATCATATGATTTATAAA+AGG | + | chr5_1:54040471-54040490 | Msa0737090:intron | 10.0% |
| !!! | ATGTTAATTTAGAAATGTTT+TGG | + | chr5_1:54040400-54040419 | Msa0737090:intron | 15.0% |
| !!! | TTAATCCATTTTATCATTTA+TGG | + | chr5_1:54040597-54040616 | Msa0737090:intron | 15.0% |
| !!! | ATGTTAATTTAGAAATGTTT+TGG | + | chr5_1:54040400-54040419 | Msa0737090:intron | 15.0% |
| !!! | TTAATCCATTTTATCATTTA+TGG | + | chr5_1:54040597-54040616 | Msa0737090:intron | 15.0% |
| !! | ATAAGATATTATGGTTGTTA+TGG | + | chr5_1:54040519-54040538 | Msa0737090:intron | 20.0% |
| !! | AACTACCATAAATGATAAAA+TGG | - | chr5_1:54040605-54040624 | None:intergenic | 20.0% |
| !! | ATGTAAATAACAAGATATTG+CGG | + | chr5_1:54040683-54040702 | Msa0737090:intron | 20.0% |
| !!! | GAATGAGTTTTTATTTAAGT+TGG | + | chr5_1:54040799-54040818 | Msa0737090:intron | 20.0% |
| !! | ATAAGATATTATGGTTGTTA+TGG | + | chr5_1:54040519-54040538 | Msa0737090:intron | 20.0% |
| !! | AACTACCATAAATGATAAAA+TGG | - | chr5_1:54040605-54040624 | None:intergenic | 20.0% |
| !! | ATGTAAATAACAAGATATTG+CGG | + | chr5_1:54040683-54040702 | Msa0737090:intron | 20.0% |
| !!! | GAATGAGTTTTTATTTAAGT+TGG | + | chr5_1:54040799-54040818 | Msa0737090:intron | 20.0% |
| ! | ATATCAAAAACAAGTCTTGA+TGG | - | chr5_1:54040037-54040056 | None:intergenic | 25.0% |
| ! | ATACCAAGCATAAACATAAA+GGG | - | chr5_1:54040444-54040463 | None:intergenic | 25.0% |
| ! | AATACCAAGCATAAACATAA+AGG | - | chr5_1:54040445-54040464 | None:intergenic | 25.0% |
| ! | GAAATTTCAATGCTAAACAA+AGG | + | chr5_1:54040823-54040842 | Msa0737090:intron | 25.0% |
| ! | TCAAAAGAGAGGAAATTTAA+AGG | + | chr5_1:54040896-54040915 | Msa0737090:CDS | 25.0% |
| ! | TTGATTCAAATTCCTTTACT+CGG | - | chr5_1:54041090-54041109 | None:intergenic | 25.0% |
| ! | AAAGGAATTTGAATCAAAAG+AGG | + | chr5_1:54041093-54041112 | Msa0737090:CDS | 25.0% |
| ! | AAGACAAACATTATGAAGAA+TGG | + | chr5_1:54041182-54041201 | Msa0737090:CDS | 25.0% |
| ! | AGACAAACATTATGAAGAAT+GGG | + | chr5_1:54041183-54041202 | Msa0737090:CDS | 25.0% |
| ! | TCTTTCGATTTCTTGTAATT+TGG | - | chr5_1:54041367-54041386 | None:intergenic | 25.0% |
| ! | ATATCAAAAACAAGTCTTGA+TGG | - | chr5_1:54040037-54040056 | None:intergenic | 25.0% |
| ! | ATACCAAGCATAAACATAAA+GGG | - | chr5_1:54040444-54040463 | None:intergenic | 25.0% |
| ! | AATACCAAGCATAAACATAA+AGG | - | chr5_1:54040445-54040464 | None:intergenic | 25.0% |
| ! | GAAATTTCAATGCTAAACAA+AGG | + | chr5_1:54040823-54040842 | Msa0737090:intron | 25.0% |
| ! | TCAAAAGAGAGGAAATTTAA+AGG | + | chr5_1:54040896-54040915 | Msa0737090:CDS | 25.0% |
| ! | TTGATTCAAATTCCTTTACT+CGG | - | chr5_1:54041090-54041109 | None:intergenic | 25.0% |
| ! | AAAGGAATTTGAATCAAAAG+AGG | + | chr5_1:54041093-54041112 | Msa0737090:CDS | 25.0% |
| ! | AAGACAAACATTATGAAGAA+TGG | + | chr5_1:54041182-54041201 | Msa0737090:CDS | 25.0% |
| ! | AGACAAACATTATGAAGAAT+GGG | + | chr5_1:54041183-54041202 | Msa0737090:CDS | 25.0% |
| ! | TCTTTCGATTTCTTGTAATT+TGG | - | chr5_1:54041367-54041386 | None:intergenic | 25.0% |
| CAATTAAGTTCAACCATTGA+TGG | + | chr5_1:54039920-54039939 | Msa0737090:CDS | 30.0% | |
| CTTACACAAGGTTTAATAGT+TGG | - | chr5_1:54040160-54040179 | None:intergenic | 30.0% | |
| !!! | AATGCTTTTTCTCTTACACA+AGG | - | chr5_1:54040172-54040191 | None:intergenic | 30.0% |
| AACTATATTTGTAACACCCA+AGG | - | chr5_1:54040374-54040393 | None:intergenic | 30.0% | |
| ! | GGTGTTACAAATATAGTTTC+TGG | + | chr5_1:54040376-54040395 | Msa0737090:CDS | 30.0% |
| GCAGTTACGATAAGATATTA+TGG | + | chr5_1:54040510-54040529 | Msa0737090:intron | 30.0% | |
| !! | TTATTAGCCTACTCTAAGAT+AGG | + | chr5_1:54040565-54040584 | Msa0737090:intron | 30.0% |
| !! | TATTAGCCTACTCTAAGATA+GGG | + | chr5_1:54040566-54040585 | Msa0737090:intron | 30.0% |
| ! | TTATGGTAGTTGTAGTTTGT+AGG | + | chr5_1:54040614-54040633 | Msa0737090:intron | 30.0% |
| ATAAAAGAGAATCAGCTCAA+AGG | + | chr5_1:54040770-54040789 | Msa0737090:intron | 30.0% | |
| AAGAGAGGAAATTTAAAGGA+TGG | + | chr5_1:54040900-54040919 | Msa0737090:CDS | 30.0% | |
| AGAGAGGAAATTTAAAGGAT+GGG | + | chr5_1:54040901-54040920 | Msa0737090:CDS | 30.0% | |
| GAAGCAGTTAGAATTAAAAG+AGG | + | chr5_1:54040925-54040944 | Msa0737090:CDS | 30.0% | |
| TTAAAAGAGGAGCAATTCAA+AGG | + | chr5_1:54040938-54040957 | Msa0737090:CDS | 30.0% | |
| ! | CAACCAACTTTTCTTTTGAT+CGG | - | chr5_1:54041021-54041040 | None:intergenic | 30.0% |
| TTAATTGAAACTCCTTCACT+TGG | - | chr5_1:54041048-54041067 | None:intergenic | 30.0% | |
| GAAGGAGTTTCAATTAACAA+AGG | + | chr5_1:54041051-54041070 | Msa0737090:CDS | 30.0% | |
| TTAACAAAGGAGGAGTTTAA+AGG | + | chr5_1:54041064-54041083 | Msa0737090:CDS | 30.0% | |
| GAATTTGAATCAAAAGAGGA+GGG | + | chr5_1:54041097-54041116 | Msa0737090:CDS | 30.0% | |
| CTGATTTCAAATCTTCCATT+TGG | - | chr5_1:54041162-54041181 | None:intergenic | 30.0% | |
| GACAAACATTATGAAGAATG+GGG | + | chr5_1:54041184-54041203 | Msa0737090:CDS | 30.0% | |
| ACAAACATTATGAAGAATGG+GGG | + | chr5_1:54041185-54041204 | Msa0737090:CDS | 30.0% | |
| ! | TATGTTCATAGTTGATGTGA+AGG | + | chr5_1:54041231-54041250 | Msa0737090:CDS | 30.0% |
| CAATTAAGTTCAACCATTGA+TGG | + | chr5_1:54039920-54039939 | Msa0737090:CDS | 30.0% | |
| CTTACACAAGGTTTAATAGT+TGG | - | chr5_1:54040160-54040179 | None:intergenic | 30.0% | |
| !!! | AATGCTTTTTCTCTTACACA+AGG | - | chr5_1:54040172-54040191 | None:intergenic | 30.0% |
| AACTATATTTGTAACACCCA+AGG | - | chr5_1:54040374-54040393 | None:intergenic | 30.0% | |
| ! | GGTGTTACAAATATAGTTTC+TGG | + | chr5_1:54040376-54040395 | Msa0737090:CDS | 30.0% |
| GCAGTTACGATAAGATATTA+TGG | + | chr5_1:54040510-54040529 | Msa0737090:intron | 30.0% | |
| !! | TTATTAGCCTACTCTAAGAT+AGG | + | chr5_1:54040565-54040584 | Msa0737090:intron | 30.0% |
| !! | TATTAGCCTACTCTAAGATA+GGG | + | chr5_1:54040566-54040585 | Msa0737090:intron | 30.0% |
| ! | TTATGGTAGTTGTAGTTTGT+AGG | + | chr5_1:54040614-54040633 | Msa0737090:intron | 30.0% |
| ATAAAAGAGAATCAGCTCAA+AGG | + | chr5_1:54040770-54040789 | Msa0737090:intron | 30.0% | |
| AAGAGAGGAAATTTAAAGGA+TGG | + | chr5_1:54040900-54040919 | Msa0737090:CDS | 30.0% | |
| AGAGAGGAAATTTAAAGGAT+GGG | + | chr5_1:54040901-54040920 | Msa0737090:CDS | 30.0% | |
| GAAGCAGTTAGAATTAAAAG+AGG | + | chr5_1:54040925-54040944 | Msa0737090:CDS | 30.0% | |
| TTAAAAGAGGAGCAATTCAA+AGG | + | chr5_1:54040938-54040957 | Msa0737090:CDS | 30.0% | |
| ! | CAACCAACTTTTCTTTTGAT+CGG | - | chr5_1:54041021-54041040 | None:intergenic | 30.0% |
| TTAATTGAAACTCCTTCACT+TGG | - | chr5_1:54041048-54041067 | None:intergenic | 30.0% | |
| GAAGGAGTTTCAATTAACAA+AGG | + | chr5_1:54041051-54041070 | Msa0737090:CDS | 30.0% | |
| TTAACAAAGGAGGAGTTTAA+AGG | + | chr5_1:54041064-54041083 | Msa0737090:CDS | 30.0% | |
| GAATTTGAATCAAAAGAGGA+GGG | + | chr5_1:54041097-54041116 | Msa0737090:CDS | 30.0% | |
| CTGATTTCAAATCTTCCATT+TGG | - | chr5_1:54041162-54041181 | None:intergenic | 30.0% | |
| GACAAACATTATGAAGAATG+GGG | + | chr5_1:54041184-54041203 | Msa0737090:CDS | 30.0% | |
| ACAAACATTATGAAGAATGG+GGG | + | chr5_1:54041185-54041204 | Msa0737090:CDS | 30.0% | |
| ! | TATGTTCATAGTTGATGTGA+AGG | + | chr5_1:54041231-54041250 | Msa0737090:CDS | 30.0% |
| TTCTTACACAGTGGAGTAAT+GGG | - | chr5_1:54040070-54040089 | None:intergenic | 35.0% | |
| ATTACTCCACTGTGTAAGAA+GGG | + | chr5_1:54040070-54040089 | Msa0737090:intron | 35.0% | |
| !!! | CTGCTGCTTTTGTCAATTTA+TGG | + | chr5_1:54040262-54040281 | Msa0737090:CDS | 35.0% |
| ! | TTTCGATGAAGGTGAAGTTT+TGG | + | chr5_1:54040297-54040316 | Msa0737090:CDS | 35.0% |
| AAACATAAAGGGAGAGATAC+TGG | - | chr5_1:54040433-54040452 | None:intergenic | 35.0% | |
| TCTCCCTTTATGTTTATGCT+TGG | + | chr5_1:54040438-54040457 | Msa0737090:intron | 35.0% | |
| ! | GTAGTTGTAGTTTGTAGGAA+TGG | + | chr5_1:54040619-54040638 | Msa0737090:intron | 35.0% |
| TCAGAAAAGAAGCAACTTCA+AGG | + | chr5_1:54040980-54040999 | Msa0737090:CDS | 35.0% | |
| CAGAAAAGAAGCAACTTCAA+GGG | + | chr5_1:54040981-54041000 | Msa0737090:CDS | 35.0% | |
| AGAAAAGAAGCAACTTCAAG+GGG | + | chr5_1:54040982-54041001 | Msa0737090:CDS | 35.0% | |
| TCTCCGATCAAAAGAAAAGT+TGG | + | chr5_1:54041015-54041034 | Msa0737090:CDS | 35.0% | |
| GGAGTTTCAATTAACAAAGG+AGG | + | chr5_1:54041054-54041073 | Msa0737090:CDS | 35.0% | |
| GGAATTTGAATCAAAAGAGG+AGG | + | chr5_1:54041096-54041115 | Msa0737090:CDS | 35.0% | |
| ! | AATCTTGAAGCATTTGCCTT+TGG | - | chr5_1:54041338-54041357 | None:intergenic | 35.0% |
| TTCTTACACAGTGGAGTAAT+GGG | - | chr5_1:54040070-54040089 | None:intergenic | 35.0% | |
| ATTACTCCACTGTGTAAGAA+GGG | + | chr5_1:54040070-54040089 | Msa0737090:intron | 35.0% | |
| !!! | CTGCTGCTTTTGTCAATTTA+TGG | + | chr5_1:54040262-54040281 | Msa0737090:CDS | 35.0% |
| ! | TTTCGATGAAGGTGAAGTTT+TGG | + | chr5_1:54040297-54040316 | Msa0737090:CDS | 35.0% |
| AAACATAAAGGGAGAGATAC+TGG | - | chr5_1:54040433-54040452 | None:intergenic | 35.0% | |
| TCTCCCTTTATGTTTATGCT+TGG | + | chr5_1:54040438-54040457 | Msa0737090:intron | 35.0% | |
| ! | GTAGTTGTAGTTTGTAGGAA+TGG | + | chr5_1:54040619-54040638 | Msa0737090:intron | 35.0% |
| TCAGAAAAGAAGCAACTTCA+AGG | + | chr5_1:54040980-54040999 | Msa0737090:CDS | 35.0% | |
| CAGAAAAGAAGCAACTTCAA+GGG | + | chr5_1:54040981-54041000 | Msa0737090:CDS | 35.0% | |
| AGAAAAGAAGCAACTTCAAG+GGG | + | chr5_1:54040982-54041001 | Msa0737090:CDS | 35.0% | |
| TCTCCGATCAAAAGAAAAGT+TGG | + | chr5_1:54041015-54041034 | Msa0737090:CDS | 35.0% | |
| GGAGTTTCAATTAACAAAGG+AGG | + | chr5_1:54041054-54041073 | Msa0737090:CDS | 35.0% | |
| GGAATTTGAATCAAAAGAGG+AGG | + | chr5_1:54041096-54041115 | Msa0737090:CDS | 35.0% | |
| ! | AATCTTGAAGCATTTGCCTT+TGG | - | chr5_1:54041338-54041357 | None:intergenic | 35.0% |
| ! | CTGCAAACTTGTTCCATCAA+TGG | - | chr5_1:54039936-54039955 | None:intergenic | 40.0% |
| TGATGGAACAAGTTTGCAGT+TGG | + | chr5_1:54039937-54039956 | Msa0737090:CDS | 40.0% | |
| GATGGATCTGATGATTCTAG+CGG | - | chr5_1:54040019-54040038 | None:intergenic | 40.0% | |
| TCTTACACAGTGGAGTAATG+GGG | - | chr5_1:54040069-54040088 | None:intergenic | 40.0% | |
| CTTCTTACACAGTGGAGTAA+TGG | - | chr5_1:54040071-54040090 | None:intergenic | 40.0% | |
| CATTACTCCACTGTGTAAGA+AGG | + | chr5_1:54040069-54040088 | Msa0737090:intron | 40.0% | |
| GTTCTTCTAGCAGATAGATG+TGG | - | chr5_1:54040123-54040142 | None:intergenic | 40.0% | |
| GAAAATTCTTCGCCAGTTCT+TGG | + | chr5_1:54040235-54040254 | Msa0737090:CDS | 40.0% | |
| TCACCTTCATCGAAAGAAGT+CGG | - | chr5_1:54040292-54040311 | None:intergenic | 40.0% | |
| !! | AAAAGAAGCATTTCGACAGC+AGG | + | chr5_1:54040858-54040877 | Msa0737090:CDS | 40.0% |
| !! | AAAGAAGCATTTCGACAGCA+GGG | + | chr5_1:54040859-54040878 | Msa0737090:CDS | 40.0% |
| !! | CAAGGGTTTTGTAAGCCAAA+TGG | + | chr5_1:54041144-54041163 | Msa0737090:CDS | 40.0% |
| ! | CCATCAAACTGCTTCTCTTT+TGG | - | chr5_1:54041265-54041284 | None:intergenic | 40.0% |
| CCAAAAGAGAAGCAGTTTGA+TGG | + | chr5_1:54041262-54041281 | Msa0737090:CDS | 40.0% | |
| AAAGAGAAGCAGTTTGATGG+AGG | + | chr5_1:54041265-54041284 | Msa0737090:CDS | 40.0% | |
| ACACCACAGTGAGAACAAAT+TGG | - | chr5_1:54041304-54041323 | None:intergenic | 40.0% | |
| !! | TGTTCTCACTGTGGTGTTAT+TGG | + | chr5_1:54041307-54041326 | Msa0737090:CDS | 40.0% |
| !! | GGTGTTATTGGTCATTCCAA+AGG | + | chr5_1:54041319-54041338 | Msa0737090:CDS | 40.0% |
| ! | CTGCAAACTTGTTCCATCAA+TGG | - | chr5_1:54039936-54039955 | None:intergenic | 40.0% |
| TGATGGAACAAGTTTGCAGT+TGG | + | chr5_1:54039937-54039956 | Msa0737090:CDS | 40.0% | |
| GATGGATCTGATGATTCTAG+CGG | - | chr5_1:54040019-54040038 | None:intergenic | 40.0% | |
| TCTTACACAGTGGAGTAATG+GGG | - | chr5_1:54040069-54040088 | None:intergenic | 40.0% | |
| CTTCTTACACAGTGGAGTAA+TGG | - | chr5_1:54040071-54040090 | None:intergenic | 40.0% | |
| CATTACTCCACTGTGTAAGA+AGG | + | chr5_1:54040069-54040088 | Msa0737090:intron | 40.0% | |
| GTTCTTCTAGCAGATAGATG+TGG | - | chr5_1:54040123-54040142 | None:intergenic | 40.0% | |
| GAAAATTCTTCGCCAGTTCT+TGG | + | chr5_1:54040235-54040254 | Msa0737090:CDS | 40.0% | |
| TCACCTTCATCGAAAGAAGT+CGG | - | chr5_1:54040292-54040311 | None:intergenic | 40.0% | |
| !! | AAAAGAAGCATTTCGACAGC+AGG | + | chr5_1:54040858-54040877 | Msa0737090:CDS | 40.0% |
| !! | AAAGAAGCATTTCGACAGCA+GGG | + | chr5_1:54040859-54040878 | Msa0737090:CDS | 40.0% |
| !! | CAAGGGTTTTGTAAGCCAAA+TGG | + | chr5_1:54041144-54041163 | Msa0737090:CDS | 40.0% |
| ! | CCATCAAACTGCTTCTCTTT+TGG | - | chr5_1:54041265-54041284 | None:intergenic | 40.0% |
| CCAAAAGAGAAGCAGTTTGA+TGG | + | chr5_1:54041262-54041281 | Msa0737090:CDS | 40.0% | |
| AAAGAGAAGCAGTTTGATGG+AGG | + | chr5_1:54041265-54041284 | Msa0737090:CDS | 40.0% | |
| ACACCACAGTGAGAACAAAT+TGG | - | chr5_1:54041304-54041323 | None:intergenic | 40.0% | |
| !! | TGTTCTCACTGTGGTGTTAT+TGG | + | chr5_1:54041307-54041326 | Msa0737090:CDS | 40.0% |
| !! | GGTGTTATTGGTCATTCCAA+AGG | + | chr5_1:54041319-54041338 | Msa0737090:CDS | 40.0% |
| AGCAGCAGAAAACCAAGAAC+TGG | - | chr5_1:54040250-54040269 | None:intergenic | 45.0% | |
| !! | TTGCCGACTTCTTTCGATGA+AGG | + | chr5_1:54040286-54040305 | Msa0737090:CDS | 45.0% |
| ! | TATGGAGCTGTTTGAGACCT+TGG | + | chr5_1:54040354-54040373 | Msa0737090:CDS | 45.0% |
| ! | ATGGAGCTGTTTGAGACCTT+GGG | + | chr5_1:54040355-54040374 | Msa0737090:CDS | 45.0% |
| !! | TAGCCTACTCTAAGATAGGG+TGG | + | chr5_1:54040569-54040588 | Msa0737090:intron | 45.0% |
| TTGCCACCCTATCTTAGAGT+AGG | - | chr5_1:54040575-54040594 | None:intergenic | 45.0% | |
| AAGATATTGCGGAGAACGAG+CGG | + | chr5_1:54040694-54040713 | Msa0737090:intron | 45.0% | |
| TCCAAGGAGAAGCTCTTTGA+AGG | + | chr5_1:54040728-54040747 | Msa0737090:intron | 45.0% | |
| ACCTTCAAAGAGCTTCTCCT+TGG | - | chr5_1:54040732-54040751 | None:intergenic | 45.0% | |
| ! | GCTCTTTGAAGGTCGTGTAA+AGG | + | chr5_1:54040739-54040758 | Msa0737090:intron | 45.0% |
| AGGAGCTGGATTCAAAAGAG+AGG | + | chr5_1:54040885-54040904 | Msa0737090:CDS | 45.0% | |
| GCAATTCAAAGGCCAAGTGA+AGG | + | chr5_1:54040949-54040968 | Msa0737090:CDS | 45.0% | |
| ! | CTGATTTGAGCTCCTTCACT+TGG | - | chr5_1:54040964-54040983 | None:intergenic | 45.0% |
| GTTGGTTGAAGTCCAAGTGA+AGG | + | chr5_1:54041033-54041052 | Msa0737090:CDS | 45.0% | |
| GGAGTTTAAAGGCCGAGTAA+AGG | + | chr5_1:54041075-54041094 | Msa0737090:CDS | 45.0% | |
| ! | CGACCAATTTGTTCTCACTG+TGG | + | chr5_1:54041298-54041317 | Msa0737090:CDS | 45.0% |
| AGCAGCAGAAAACCAAGAAC+TGG | - | chr5_1:54040250-54040269 | None:intergenic | 45.0% | |
| !! | TTGCCGACTTCTTTCGATGA+AGG | + | chr5_1:54040286-54040305 | Msa0737090:CDS | 45.0% |
| ! | TATGGAGCTGTTTGAGACCT+TGG | + | chr5_1:54040354-54040373 | Msa0737090:CDS | 45.0% |
| ! | ATGGAGCTGTTTGAGACCTT+GGG | + | chr5_1:54040355-54040374 | Msa0737090:CDS | 45.0% |
| !! | TAGCCTACTCTAAGATAGGG+TGG | + | chr5_1:54040569-54040588 | Msa0737090:intron | 45.0% |
| TTGCCACCCTATCTTAGAGT+AGG | - | chr5_1:54040575-54040594 | None:intergenic | 45.0% | |
| AAGATATTGCGGAGAACGAG+CGG | + | chr5_1:54040694-54040713 | Msa0737090:intron | 45.0% | |
| TCCAAGGAGAAGCTCTTTGA+AGG | + | chr5_1:54040728-54040747 | Msa0737090:intron | 45.0% | |
| ACCTTCAAAGAGCTTCTCCT+TGG | - | chr5_1:54040732-54040751 | None:intergenic | 45.0% | |
| ! | GCTCTTTGAAGGTCGTGTAA+AGG | + | chr5_1:54040739-54040758 | Msa0737090:intron | 45.0% |
| AGGAGCTGGATTCAAAAGAG+AGG | + | chr5_1:54040885-54040904 | Msa0737090:CDS | 45.0% | |
| GCAATTCAAAGGCCAAGTGA+AGG | + | chr5_1:54040949-54040968 | Msa0737090:CDS | 45.0% | |
| ! | CTGATTTGAGCTCCTTCACT+TGG | - | chr5_1:54040964-54040983 | None:intergenic | 45.0% |
| GTTGGTTGAAGTCCAAGTGA+AGG | + | chr5_1:54041033-54041052 | Msa0737090:CDS | 45.0% | |
| GGAGTTTAAAGGCCGAGTAA+AGG | + | chr5_1:54041075-54041094 | Msa0737090:CDS | 45.0% | |
| ! | CGACCAATTTGTTCTCACTG+TGG | + | chr5_1:54041298-54041317 | Msa0737090:CDS | 45.0% |
| CTGTCTCCCTTCTTACACAG+TGG | - | chr5_1:54040079-54040098 | None:intergenic | 50.0% | |
| TGCTCAGCACAAGACAGCTA+TGG | + | chr5_1:54040336-54040355 | Msa0737090:CDS | 50.0% | |
| GCAACTTCAAGGGGAACTGA+AGG | + | chr5_1:54040991-54041010 | Msa0737090:CDS | 50.0% | |
| TGCTCGAATGCAGAAGCTCA+AGG | + | chr5_1:54041126-54041145 | Msa0737090:CDS | 50.0% | |
| GCTCGAATGCAGAAGCTCAA+GGG | + | chr5_1:54041127-54041146 | Msa0737090:CDS | 50.0% | |
| TGAAGAATGGGGGAAAGAGC+TGG | + | chr5_1:54041195-54041214 | Msa0737090:CDS | 50.0% | |
| CTGTCTCCCTTCTTACACAG+TGG | - | chr5_1:54040079-54040098 | None:intergenic | 50.0% | |
| TGCTCAGCACAAGACAGCTA+TGG | + | chr5_1:54040336-54040355 | Msa0737090:CDS | 50.0% | |
| GCAACTTCAAGGGGAACTGA+AGG | + | chr5_1:54040991-54041010 | Msa0737090:CDS | 50.0% | |
| TGCTCGAATGCAGAAGCTCA+AGG | + | chr5_1:54041126-54041145 | Msa0737090:CDS | 50.0% | |
| GCTCGAATGCAGAAGCTCAA+GGG | + | chr5_1:54041127-54041146 | Msa0737090:CDS | 50.0% | |
| TGAAGAATGGGGGAAAGAGC+TGG | + | chr5_1:54041195-54041214 | Msa0737090:CDS | 50.0% | |
| ATATTGCGGAGAACGAGCGG+TGG | + | chr5_1:54040697-54040716 | Msa0737090:intron | 55.0% | |
| GCATTTCGACAGCAGGGTGA+AGG | + | chr5_1:54040865-54040884 | Msa0737090:CDS | 55.0% | |
| ! | GCAGTTTGATGGAGGCGTGA+AGG | + | chr5_1:54041273-54041292 | Msa0737090:CDS | 55.0% |
| ATATTGCGGAGAACGAGCGG+TGG | + | chr5_1:54040697-54040716 | Msa0737090:intron | 55.0% | |
| GCATTTCGACAGCAGGGTGA+AGG | + | chr5_1:54040865-54040884 | Msa0737090:CDS | 55.0% | |
| ! | GCAGTTTGATGGAGGCGTGA+AGG | + | chr5_1:54041273-54041292 | Msa0737090:CDS | 55.0% |
| AGCGGTGGAGCTTGAGTCCA+AGG | + | chr5_1:54040712-54040731 | Msa0737090:intron | 60.0% | |
| AGCGGTGGAGCTTGAGTCCA+AGG | + | chr5_1:54040712-54040731 | Msa0737090:intron | 60.0% | |
| CGACAGCAGGGTGAAGGAGC+TGG | + | chr5_1:54040871-54040890 | Msa0737090:CDS | 65.0% | |
| CGACAGCAGGGTGAAGGAGC+TGG | + | chr5_1:54040871-54040890 | Msa0737090:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 54039911 | 54041393 | 54039911 | ID=Msa0737090;Name=Msa0737090 |
| chr5_1 | mRNA | 54039911 | 54041393 | 54039911 | ID=Msa0737090-mRNA-1;Parent=Msa0737090;Name=Msa0737090-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|0|0|0.75|1|1|4|0|318 |
| chr5_1 | exon | 54039911 | 54040080 | 54039911 | ID=Msa0737090-mRNA-1:exon:15203;Parent=Msa0737090-mRNA-1 |
| chr5_1 | exon | 54040180 | 54040397 | 54040180 | ID=Msa0737090-mRNA-1:exon:15204;Parent=Msa0737090-mRNA-1 |
| chr5_1 | exon | 54040493 | 54040512 | 54040493 | ID=Msa0737090-mRNA-1:exon:15205;Parent=Msa0737090-mRNA-1 |
| chr5_1 | exon | 54040845 | 54041393 | 54040845 | ID=Msa0737090-mRNA-1:exon:15206;Parent=Msa0737090-mRNA-1 |
| chr5_1 | CDS | 54039911 | 54040080 | 54039911 | ID=Msa0737090-mRNA-1:cds;Parent=Msa0737090-mRNA-1 |
| chr5_1 | CDS | 54040180 | 54040397 | 54040180 | ID=Msa0737090-mRNA-1:cds;Parent=Msa0737090-mRNA-1 |
| chr5_1 | CDS | 54040493 | 54040512 | 54040493 | ID=Msa0737090-mRNA-1:cds;Parent=Msa0737090-mRNA-1 |
| chr5_1 | CDS | 54040845 | 54041393 | 54040845 | ID=Msa0737090-mRNA-1:cds;Parent=Msa0737090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
