AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0737080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0737080 MtrunA17_Chr2g0325781 46.284 296 119 6 162 423 2 291 2.09e-61 203
Msa0737080 MtrunA17_Chr2g0325701 49.110 281 76 6 192 426 41 300 1.17e-56 198
Msa0737080 MtrunA17_Chr2g0325701 45.213 188 78 3 44 206 251 438 1.99e-28 118
Msa0737080 MtrunA17_Chr2g0325701 58.904 73 29 1 414 486 505 576 9.43e-13 70.5
Msa0737080 MtrunA17_Chr7g0235901 46.388 263 85 3 200 426 12 254 6.93e-56 188
Msa0737080 MtrunA17_Chr7g0235901 32.749 171 65 2 44 172 149 311 6.28e-14 72.8
Msa0737080 MtrunA17_Chr2g0325231 43.894 303 96 4 198 426 41 343 1.95e-52 190
Msa0737080 MtrunA17_Chr2g0325231 33.130 492 229 19 49 486 411 856 9.22e-34 135
Msa0737080 MtrunA17_Chr2g0325231 34.663 401 170 13 44 426 238 564 1.95e-31 128
Msa0737080 MtrunA17_Chr2g0325231 49.444 180 60 4 45 205 558 725 1.18e-30 126
Msa0737080 MtrunA17_Chr2g0325231 33.990 406 218 12 45 418 281 668 7.52e-28 117
Msa0737080 MtrunA17_Chr5g0416271 49.772 219 100 2 220 428 38 256 2.16e-51 181
Msa0737080 MtrunA17_Chr5g0416271 28.800 375 203 11 115 486 156 469 2.45e-16 81.3
Msa0737080 MtrunA17_Chr5g0416271 37.324 142 81 1 44 185 191 324 1.08e-12 70.1
Msa0737080 MtrunA17_Chr2g0325691 52.340 235 75 3 229 426 111 345 4.29e-50 182
Msa0737080 MtrunA17_Chr2g0325691 33.173 416 229 9 45 426 311 711 8.07e-30 123
Msa0737080 MtrunA17_Chr2g0325691 52.258 155 68 1 45 193 565 719 3.71e-29 121
Msa0737080 MtrunA17_Chr2g0325691 32.995 394 199 11 45 424 283 625 1.70e-27 116
Msa0737080 MtrunA17_Chr2g0325691 31.190 420 202 12 45 404 325 717 8.64e-21 95.9
Msa0737080 MtrunA17_Chr2g0325691 31.188 404 185 14 44 426 240 571 1.57e-17 85.9
Msa0737080 MtrunA17_Chr2g0325691 38.554 166 83 5 270 428 306 459 8.55e-12 67.8
Msa0737080 MtrunA17_Chr2g0325741 55.738 183 61 2 233 415 143 305 4.06e-49 171
Msa0737080 MtrunA17_Chr2g0325721 41.946 298 104 7 198 426 29 326 4.33e-44 162
Msa0737080 MtrunA17_Chr2g0325711 43.825 251 71 4 45 237 354 592 6.40e-43 162
Msa0737080 MtrunA17_Chr2g0325711 44.286 210 99 3 232 426 112 318 4.07e-31 127
Msa0737080 MtrunA17_Chr2g0325711 61.667 60 23 0 427 486 662 721 1.23e-17 86.3
Msa0737080 MtrunA17_Chr2g0325711 27.684 354 216 9 77 426 235 552 2.74e-11 66.2
Msa0737080 MtrunA17_Chr2g0325351 42.969 256 109 7 188 426 68 303 8.68e-43 161
Msa0737080 MtrunA17_Chr2g0325351 63.014 73 27 0 414 486 500 572 2.46e-14 75.5
Msa0737080 MtrunA17_Chr2g0325351 42.188 128 66 1 44 171 282 401 1.25e-13 73.6
Msa0737080 MtrunA17_Chr2g0325351 36.667 150 78 2 59 191 230 379 8.02e-13 70.9
Msa0737080 MtrunA17_Chr2g0325351 35.802 162 85 3 41 184 226 386 4.09e-11 65.5
Msa0737080 MtrunA17_Chr2g0325241 54.450 191 45 3 45 202 188 369 4.17e-42 155
Msa0737080 MtrunA17_Chr2g0325241 34.836 244 92 7 1 185 1 236 1.19e-19 91.3
Msa0737080 MtrunA17_Chr2g0325811 53.439 189 44 3 46 190 385 573 3.08e-41 157
Msa0737080 MtrunA17_Chr2g0325811 43.802 242 108 8 198 427 111 336 1.19e-33 135
Msa0737080 MtrunA17_Chr2g0325811 53.425 73 34 0 414 486 651 723 3.70e-19 90.9
Msa0737080 MtrunA17_Chr2g0325811 60.784 51 9 1 8 47 1 51 1.21e-11 67.4
Msa0737080 MtrunA17_Chr2g0325281 40.784 255 102 3 220 425 66 320 6.24e-41 155
Msa0737080 MtrunA17_Chr2g0325281 33.249 394 188 10 44 426 244 573 8.03e-27 114
Msa0737080 MtrunA17_Chr2g0325281 31.172 401 179 10 45 423 259 584 4.96e-22 99.4
Msa0737080 MtrunA17_Chr2g0325281 42.520 127 51 2 45 171 483 587 1.67e-13 72.8
Msa0737080 MtrunA17_Chr2g0325621 36.667 300 108 5 199 426 13 302 3.35e-40 153
Msa0737080 MtrunA17_Chr2g0325621 53.261 92 42 1 395 486 455 545 1.16e-13 73.6
Msa0737080 MtrunA17_Chr2g0325221 40.532 301 98 9 190 425 109 393 9.34e-39 149
Msa0737080 MtrunA17_Chr2g0325221 46.226 212 56 3 45 198 388 599 5.46e-38 147
Msa0737080 MtrunA17_Chr2g0325221 27.157 394 179 9 52 437 311 604 1.19e-14 76.6
Msa0737080 MtrunA17_Chr2g0325221 32.381 210 99 5 259 426 256 464 3.55e-12 68.9
Msa0737080 MtrunA17_Chr2g0325321 45.614 228 103 5 220 426 66 293 3.43e-38 148
Msa0737080 MtrunA17_Chr2g0325321 31.172 401 187 9 44 426 244 573 6.28e-19 90.1
Msa0737080 MtrunA17_Chr2g0325321 31.545 466 260 12 45 486 315 745 3.39e-18 87.8
Msa0737080 MtrunA17_Chr2g0325861 35.474 327 113 4 193 426 27 348 1.05e-37 147
Msa0737080 MtrunA17_Chr2g0325861 27.626 514 251 13 45 486 342 806 2.92e-26 112
Msa0737080 MtrunA17_Chr2g0325861 33.499 403 189 10 45 428 286 628 1.51e-25 110
Msa0737080 MtrunA17_Chr2g0280141 30.040 506 216 11 45 486 271 702 2.35e-35 140
Msa0737080 MtrunA17_Chr2g0280141 32.558 301 131 7 202 431 25 324 6.89e-20 93.2
Msa0737080 MtrunA17_Chr2g0325361 35.109 413 185 10 45 426 325 685 1.59e-33 135
Msa0737080 MtrunA17_Chr2g0325361 37.247 247 121 5 214 426 57 303 3.17e-26 112
Msa0737080 MtrunA17_Chr2g0325361 31.476 359 175 11 79 426 247 545 5.39e-15 78.2
Msa0737080 MtrunA17_Chr2g0333341 39.683 252 87 5 232 426 155 398 1.45e-31 128
Msa0737080 MtrunA17_Chr2g0333341 75.000 60 15 0 427 486 536 595 3.72e-15 78.2
Msa0737080 MtrunA17_Chr2g0325661 35.032 314 128 9 188 443 109 404 2.00e-29 122
Msa0737080 MtrunA17_Chr2g0325661 31.383 376 220 11 61 426 248 595 2.20e-15 79.3
Msa0737080 MtrunA17_Chr2g0325751 50.000 148 59 2 49 196 2 134 9.85e-29 111
Msa0737080 MtrunA17_Chr2g0325651 37.698 252 127 7 190 426 81 317 1.78e-28 116
Msa0737080 MtrunA17_Chr2g0325651 34.641 153 85 2 44 189 226 370 5.33e-13 70.5
Msa0737080 MtrunA17_Chr2g0325651 38.462 143 72 2 45 174 241 380 1.79e-12 68.9
Msa0737080 MtrunA17_Chr2g0325211 44.134 179 56 3 49 197 2 166 5.05e-27 107
Msa0737080 MtrunA17_Chr6g0471251 32.039 309 142 6 185 425 37 345 6.00e-27 114
Msa0737080 MtrunA17_Chr6g0471251 35.833 240 85 4 45 217 284 521 1.19e-16 83.2
Msa0737080 MtrunA17_Chr6g0471251 60.000 60 24 0 427 486 592 651 2.84e-16 82.0
Msa0737080 MtrunA17_Chr2g0325611 48.366 153 64 2 45 197 184 321 1.59e-26 113
Msa0737080 MtrunA17_Chr2g0325611 66.667 60 20 0 427 486 415 474 2.04e-12 69.3
Msa0737080 MtrunA17_Chr2g0325261 40.476 210 107 5 232 426 97 303 1.02e-25 107
Msa0737080 MtrunA17_Chr2g0325341 40.476 210 107 5 232 426 97 303 1.02e-25 107
Msa0737080 MtrunA17_Chr2g0325761 41.398 186 90 5 47 218 439 619 6.38e-24 105
Msa0737080 MtrunA17_Chr2g0325761 37.131 237 91 5 247 425 150 386 8.05e-23 102
Msa0737080 MtrunA17_Chr2g0325761 28.979 421 213 11 33 435 259 611 2.35e-17 85.1
Msa0737080 MtrunA17_Chr5g0434741 38.164 207 104 5 232 420 97 297 7.96e-24 101
Msa0737080 MtrunA17_Chr2g0325641 30.827 399 165 10 45 428 6 308 9.78e-21 93.2
Msa0737080 MtrunA17_Chr2g0325641 44.755 143 64 2 44 186 180 307 3.15e-20 91.7
Msa0737080 MtrunA17_Chr2g0325641 41.176 170 73 5 259 424 4 150 1.88e-12 68.6
Msa0737080 MtrunA17_Chr5g0434761 60.274 73 29 0 414 486 77 149 1.46e-19 88.6
Msa0737080 MtrunA17_Chr2g0325201 37.321 209 69 4 277 423 2 210 3.52e-19 86.7
Msa0737080 MtrunA17_Chr2g0325801 75.439 57 14 0 232 288 68 124 5.73e-19 82.8
Msa0737080 MtrunA17_Chr2g0332951 66.667 63 18 1 427 486 132 194 8.87e-19 84.7
Msa0737080 MtrunA17_Chr3g0140581 42.593 108 62 0 234 341 4 111 5.63e-17 78.2
Msa0737080 MtrunA17_Chr5g0434751 39.437 142 71 1 44 185 145 271 4.63e-14 72.8
Msa0737080 MtrunA17_Chr5g0434751 39.333 150 57 2 48 163 37 186 2.69e-12 67.4
Msa0737080 MtrunA17_Chr5g0434751 52.941 85 36 1 340 420 6 90 3.48e-11 64.3
Msa0737080 MtrunA17_Chr5g0434751 34.228 149 76 2 54 188 1 141 4.06e-11 63.9
Msa0737080 MtrunA17_Chr2g0325791 40.625 128 54 2 321 426 22 149 7.44e-14 72.4
Msa0737080 MtrunA17_Chr2g0332961 73.913 46 12 0 427 472 308 353 1.80e-13 71.6
Msa0737080 MtrunA17_Chr2g0325331 60.274 73 29 0 414 486 77 149 4.78e-13 67.4
Msa0737080 MtrunA17_Chr3g0140591 54.795 73 33 0 414 486 84 156 6.01e-13 67.0
Msa0737080 MtrunA17_Chr4g0044221 33.889 180 97 4 254 411 14 193 9.09e-13 69.3
Msa0737080 MtrunA17_Chr2g0325771 73.333 60 16 0 427 486 100 159 6.37e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 79 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTCAATATCTCTATTTA+TGG 0.179424 5_1:-54038212 None:intergenic
GAAAATTCTTTGGCGGTTAT+TGG 0.189416 5_1:+54039459 Msa0737080:CDS
CCATCAAACGGCTTCTCTTT+CGG 0.275473 5_1:-54036066 None:intergenic
AGAAAATACTGAAAATTCTT+TGG 0.279753 5_1:+54039449 Msa0737080:CDS
TCAAAAGAGAGGCAATTTAA+AGG 0.289337 5_1:+54035701 Msa0737080:CDS
CTGATTTCAAATCTTCCATT+TGG 0.306760 5_1:-54035963 None:intergenic
CATTCACCAGCTCATTCATT+TGG 0.321781 5_1:-54038471 None:intergenic
CTGATTCCAGCTTCTTCACT+TGG 0.325742 5_1:-54038775 None:intergenic
TCAGCACAAGATAGCTGTTT+AGG 0.349900 5_1:+54039563 Msa0737080:CDS
ATTTGATGAAGAAACAGAAT+TGG 0.359175 5_1:+54036185 Msa0737080:CDS
AATTGTCCATCAAATTCATT+TGG 0.367535 5_1:-54036114 None:intergenic
CCGAAAGAGAAGCCGTTTGA+TGG 0.393205 5_1:+54036066 Msa0737080:CDS
AGCAGTAATAATAACTATAA+TGG 0.393392 5_1:+54037920 Msa0737080:CDS
TCAAAGCCAAATGAATTTGA+TGG 0.395573 5_1:+54036108 Msa0737080:CDS
AGACAAACATTATGAAGAAT+GGG 0.403930 5_1:+54035987 Msa0737080:CDS
GAATTTCACACATGATTTGA+AGG 0.404597 5_1:+54039416 Msa0737080:CDS
GGAAGGGCAGCTCTATTTGA+TGG 0.408419 5_1:+54038351 Msa0737080:CDS
AATTCTGTTTCTTCATCAAA+TGG 0.409073 5_1:-54036183 None:intergenic
TCGTCATCATCATAAGAAAC+TGG 0.422867 5_1:-54035312 None:intergenic
CGATGCTCCTTTGTCAGAAA+AGG 0.423306 5_1:+54035332 Msa0737080:CDS
AAGACAAACATTATGAAGAA+TGG 0.431438 5_1:+54035986 Msa0737080:CDS
TTTCCGATCAAAAGAAAAGT+TGG 0.436818 5_1:+54035820 Msa0737080:CDS
CAAATAGAGCTGCCCTTCCT+TGG 0.436942 5_1:-54038347 None:intergenic
TATTTGATGGAGGACATGAT+TGG 0.450616 5_1:+54038364 Msa0737080:CDS
CGAATTTCGCAAGCAAGTGC+AGG 0.456238 5_1:+54038291 Msa0737080:CDS
TTTGATGAAGAAACAGAATT+GGG 0.460504 5_1:+54036186 Msa0737080:CDS
TGATAGCCGGGTTAAGGAGT+TGG 0.467109 5_1:+54035676 Msa0737080:CDS
ATTTGAAGAAAACTCATTTG+AGG 0.467594 5_1:+54038147 Msa0737080:CDS
AAATACTGAAAATTCTTTGG+CGG 0.480429 5_1:+54039452 Msa0737080:CDS
GAAGGAGTTTGAATTAAAAG+AGG 0.484228 5_1:+54035730 Msa0737080:CDS
GCAATTGAAAGTACAAGTTA+AGG 0.485918 5_1:+54038679 Msa0737080:CDS
TAGATTCTAGCCCCTTCACT+TGG 0.486712 5_1:-54038607 None:intergenic
GTGATTTGAGATCCTCCACT+TGG 0.490619 5_1:-54038649 None:intergenic
GTCCATAAATAGAGATATTG+AGG 0.493883 5_1:+54038210 Msa0737080:CDS
GTTGGAACTTCGTGAAATCA+TGG 0.496038 5_1:+54038417 Msa0737080:CDS
ACTATAATGGCTCTGTTAAG+AGG 0.498960 5_1:+54037933 Msa0737080:CDS
GAAGCTGGAATCAGAAAAGA+AGG 0.501898 5_1:+54038784 Msa0737080:CDS
TCCTTCACACCTCCATCAAA+CGG 0.506376 5_1:-54036078 None:intergenic
CAAAGTGATGGCCGAGTGAA+GGG 0.515145 5_1:+54038722 Msa0737080:CDS
GGATAACATTTCAAAACAGA+TGG 0.516535 5_1:+54038438 Msa0737080:CDS
ACTCATTTGAGGAATGCAAA+AGG 0.530697 5_1:+54038158 Msa0737080:CDS
GCAAAGTGATGGCCGAGTGA+AGG 0.531976 5_1:+54038721 Msa0737080:CDS
GCTCGAATGCAGAAGCTCAA+TGG 0.534526 5_1:+54035931 Msa0737080:intron
TTGATTCAAACCCCTTCACT+CGG 0.535904 5_1:-54038733 None:intergenic
AGAGAGGCAATTTAAAGGAC+GGG 0.540797 5_1:+54035706 Msa0737080:CDS
GAATTTCGCAAGCAAGTGCA+GGG 0.544607 5_1:+54038292 Msa0737080:CDS
GCAATTTAAAGGACGGGTGA+AGG 0.549668 5_1:+54035712 Msa0737080:CDS
TGAAGTCCAAGTGAAGAAGC+TGG 0.555933 5_1:+54038769 Msa0737080:CDS
AGATCTCCAGACAAAAGAGT+TGG 0.557429 5_1:+54038399 Msa0737080:CDS
TATTGTTTCTCTGTTAACTC+AGG 0.558132 5_1:-54036144 None:intergenic
GCCGTTTGATGGAGGTGTGA+AGG 0.564111 5_1:+54036077 Msa0737080:CDS
ATGATGTTCCTTCGTTAGCA+CGG 0.565351 5_1:+54037870 Msa0737080:CDS
GAAGGGGTTTGAATCAAAGA+AGG 0.569459 5_1:+54038739 Msa0737080:CDS
GGAATTTAAAAGCCAAGTGA+AGG 0.571794 5_1:+54038595 Msa0737080:CDS
TTAAAAGAGGAGCAATTCAA+AGG 0.576443 5_1:+54035743 Msa0737080:CDS
AAGAGAGGCAATTTAAAGGA+CGG 0.581140 5_1:+54035705 Msa0737080:CDS
TTGAATCCAACTCCTTAACC+CGG 0.583548 5_1:-54035682 None:intergenic
GCAGAAAAGAAGCAATTCGA+AGG 0.588903 5_1:+54035785 Msa0737080:CDS
TACATGGCATTCAGAAGTGA+GGG 0.591241 5_1:+54035287 Msa0737080:CDS
GAAAATTGAAGAATGTGTCA+AGG 0.594705 5_1:+54038315 Msa0737080:CDS
TATGTTCAAAGTAGATGTGA+AGG 0.595378 5_1:+54036035 Msa0737080:CDS
GAATTTAAAAGCCAAGTGAA+GGG 0.596980 5_1:+54038596 Msa0737080:CDS
TGAAAGCCAAATGAATGAGC+TGG 0.600780 5_1:+54038465 Msa0737080:CDS
GACAAACATTATGAAGAATG+GGG 0.606927 5_1:+54035988 Msa0737080:CDS
AATTTAAAAGCCAAGTGAAG+GGG 0.617758 5_1:+54038597 Msa0737080:CDS
AAAGAGAAGCCGTTTGATGG+AGG 0.619411 5_1:+54036069 Msa0737080:CDS
ATAATGGCTCTGTTAAGAGG+AGG 0.619469 5_1:+54037936 Msa0737080:CDS
GTACATGGCATTCAGAAGTG+AGG 0.621261 5_1:+54035286 Msa0737080:CDS
AGGAGTTGGATTCAAAAGAG+AGG 0.632615 5_1:+54035690 Msa0737080:CDS
TCTAAAGAGAAGCAAAGTGA+TGG 0.633979 5_1:+54038710 Msa0737080:CDS
TAATGGCTCTGTTAAGAGGA+GGG 0.634361 5_1:+54037937 Msa0737080:CDS
CAGAAAAGAAGCAATTCGAA+GGG 0.645647 5_1:+54035786 Msa0737080:CDS
AGGATCTCAAATCACAAGAG+TGG 0.656491 5_1:+54038657 Msa0737080:CDS
TGAGGAAACCGTGCTAACGA+AGG 0.666192 5_1:-54037878 None:intergenic
ACAAACATTATGAAGAATGG+GGG 0.666481 5_1:+54035989 Msa0737080:CDS
AAAGTGATGGCCGAGTGAAG+GGG 0.671538 5_1:+54038723 Msa0737080:CDS
AGGGCAGCTCTATTTGATGG+AGG 0.680424 5_1:+54038354 Msa0737080:CDS
AATTTCGCAAGCAAGTGCAG+GGG 0.713058 5_1:+54038293 Msa0737080:CDS
GTGTTGGTGAGAAAAGTACA+TGG 0.727268 5_1:+54035271 Msa0737080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAATATAATTGATTTTAA+AGG + chr5_1:54035225-54035244 Msa0737080:CDS 10.0%
!!! AATACTGTTTTTAAAAAATT+AGG - chr5_1:54036301-54036320 None:intergenic 10.0%
!! ATAACATATATGTATATATT+TGG - chr5_1:54037054-54037073 None:intergenic 10.0%
!!! TAATCAAAATATTTTATCAA+TGG - chr5_1:54039104-54039123 None:intergenic 10.0%
!!! ATTGATAAAATATTTTGATT+AGG + chr5_1:54039103-54039122 Msa0737080:intron 10.0%
!!! TATTTTTAAGAAGAATATCT+CGG - chr5_1:54035396-54035415 None:intergenic 15.0%
!! GAATAAGTTTAAATTAAAGT+TGG + chr5_1:54035604-54035623 Msa0737080:intron 15.0%
!! TCAAAAAAACAAAATGAAAA+AGG - chr5_1:54036219-54036238 None:intergenic 15.0%
!! ATATGTTATGATTAAGATAT+TGG + chr5_1:54037065-54037084 Msa0737080:intron 15.0%
!!! TATTTCTTCTATTTTTCAAA+TGG + chr5_1:54037185-54037204 Msa0737080:intron 15.0%
!!! AATAAGTTCTAATTAACAAA+AGG - chr5_1:54037249-54037268 None:intergenic 15.0%
!! AAATGATTTATCAGTTTATA+TGG - chr5_1:54038104-54038123 None:intergenic 15.0%
!! GAGATATTCTTCTTAAAAAT+AGG + chr5_1:54035395-54035414 Msa0737080:intron 20.0%
!! TCTTTATCTTGATTATCATA+TGG - chr5_1:54035503-54035522 None:intergenic 20.0%
!!! ATTTCAACTGTTTCTTTTTA+TGG + chr5_1:54036248-54036267 Msa0737080:intron 20.0%
!! AATCTCATTAAACATTCATA+AGG + chr5_1:54036529-54036548 Msa0737080:intron 20.0%
!!! GTGGTTTATTTTAAATATTG+TGG + chr5_1:54036740-54036759 Msa0737080:intron 20.0%
!! TTAAGTTAATGAAAACTCTT+CGG + chr5_1:54036827-54036846 Msa0737080:intron 20.0%
!!! AACTTATTTTATAGTTGTTC+TGG + chr5_1:54037261-54037280 Msa0737080:intron 20.0%
!! TGCTCTTAAACATTAAATTT+AGG - chr5_1:54037443-54037462 None:intergenic 20.0%
!!! AGTGAAAATAGTATTTTTAC+TGG + chr5_1:54037730-54037749 Msa0737080:intron 20.0%
!!! TTTCCTCAATTTTTGAATTT+GGG + chr5_1:54037893-54037912 Msa0737080:CDS 20.0%
!! AGCAGTAATAATAACTATAA+TGG + chr5_1:54037920-54037939 Msa0737080:CDS 20.0%
!! CGGTTTAATTAAAAAATTCA+AGG + chr5_1:54038015-54038034 Msa0737080:intron 20.0%
!! AAAAAAGAAATTAGTTGTGT+TGG + chr5_1:54038259-54038278 Msa0737080:CDS 20.0%
!! TCAAATCTAAATAAACATGA+TGG + chr5_1:54039038-54039057 Msa0737080:intron 20.0%
!! AGAAAATACTGAAAATTCTT+TGG + chr5_1:54039449-54039468 Msa0737080:CDS 20.0%
! GAAATTTAATTGCCAAATGA+TGG + chr5_1:54035628-54035647 Msa0737080:intron 25.0%
! TTGATTCAAATTCCTTTATC+CGG - chr5_1:54035895-54035914 None:intergenic 25.0%
! AAAGGAATTTGAATCAAAAG+AGG + chr5_1:54035898-54035917 Msa0737080:intron 25.0%
! AAGACAAACATTATGAAGAA+TGG + chr5_1:54035986-54036005 Msa0737080:CDS 25.0%
! AGACAAACATTATGAAGAAT+GGG + chr5_1:54035987-54036006 Msa0737080:CDS 25.0%
! AATTGTCCATCAAATTCATT+TGG - chr5_1:54036117-54036136 None:intergenic 25.0%
!! AATTCTGTTTCTTCATCAAA+TGG - chr5_1:54036186-54036205 None:intergenic 25.0%
! ATTTGATGAAGAAACAGAAT+TGG + chr5_1:54036185-54036204 Msa0737080:CDS 25.0%
! TTTGATGAAGAAACAGAATT+GGG + chr5_1:54036186-54036205 Msa0737080:CDS 25.0%
!!! AATCAAATATCTCACTTTTG+TGG - chr5_1:54036434-54036453 None:intergenic 25.0%
! TCTGATCGTTATTACTAATT+TGG + chr5_1:54036642-54036661 Msa0737080:intron 25.0%
!!! TTTGTTTTTTGTTTTAGCCA+TGG + chr5_1:54036713-54036732 Msa0737080:intron 25.0%
!! TTAAGATATTGGTTGTAAGT+AGG + chr5_1:54037076-54037095 Msa0737080:intron 25.0%
!! TATTTAGAACTATCGCAAAA+TGG - chr5_1:54037548-54037567 None:intergenic 25.0%
!! GTTTCCTCAATTTTTGAATT+TGG + chr5_1:54037892-54037911 Msa0737080:CDS 25.0%
! CAATTAATATCCTCTTAACT+GGG - chr5_1:54037976-54037995 None:intergenic 25.0%
! TCAATTAATATCCTCTTAAC+TGG - chr5_1:54037977-54037996 None:intergenic 25.0%
! ATTTGAAGAAAACTCATTTG+AGG + chr5_1:54038147-54038166 Msa0737080:CDS 25.0%
! TCGAATCAAAAGAAATTTGA+TGG + chr5_1:54038831-54038850 Msa0737080:intron 25.0%
! TTAAAAGAGAATCAGATTGA+AGG + chr5_1:54038996-54039015 Msa0737080:intron 25.0%
! TGTTTATTTAGATTTGACTC+TGG - chr5_1:54039035-54039054 None:intergenic 25.0%
! TTTGATTAGGAAATAGAATC+AGG + chr5_1:54039116-54039135 Msa0737080:intron 25.0%
! AAATACTGAAAATTCTTTGG+CGG + chr5_1:54039452-54039471 Msa0737080:CDS 25.0%
! TCTGATAACTCAAAGTTTTG+TGG + chr5_1:54035249-54035268 Msa0737080:CDS 30.0%
GTTACTAAATTTGACATCCA+CGG - chr5_1:54035361-54035380 None:intergenic 30.0%
GGATGTCAAATTTAGTAACA+TGG + chr5_1:54035362-54035381 Msa0737080:intron 30.0%
CAATGTCATTGCTAGTTAAA+AGG + chr5_1:54035428-54035447 Msa0737080:intron 30.0%
!! TTTCTTAACAGAAGTGTTCA+AGG - chr5_1:54035468-54035487 None:intergenic 30.0%
CACTTCTGTTAAGAAATCAA+AGG + chr5_1:54035472-54035491 Msa0737080:intron 30.0%
AAGATGATATTCCTTTGAGT+CGG + chr5_1:54035519-54035538 Msa0737080:intron 30.0%
! AAGATTCAAGTTCCATCATT+TGG - chr5_1:54035643-54035662 None:intergenic 30.0%
!!! AAAAGAAGCATTTTGATAGC+CGG + chr5_1:54035663-54035682 Msa0737080:intron 30.0%
TCAAAAGAGAGGCAATTTAA+AGG + chr5_1:54035701-54035720 Msa0737080:CDS 30.0%
GAAGGAGTTTGAATTAAAAG+AGG + chr5_1:54035730-54035749 Msa0737080:CDS 30.0%
TTAAAAGAGGAGCAATTCAA+AGG + chr5_1:54035743-54035762 Msa0737080:CDS 30.0%
TTTCCGATCAAAAGAAAAGT+TGG + chr5_1:54035820-54035839 Msa0737080:CDS 30.0%
! CAACCAACTTTTCTTTTGAT+CGG - chr5_1:54035826-54035845 None:intergenic 30.0%
GAATTTGAATCAAAAGAGGA+GGG + chr5_1:54035902-54035921 Msa0737080:intron 30.0%
CTGATTTCAAATCTTCCATT+TGG - chr5_1:54035966-54035985 None:intergenic 30.0%
GACAAACATTATGAAGAATG+GGG + chr5_1:54035988-54036007 Msa0737080:CDS 30.0%
ACAAACATTATGAAGAATGG+GGG + chr5_1:54035989-54036008 Msa0737080:CDS 30.0%
TATGTTCAAAGTAGATGTGA+AGG + chr5_1:54036035-54036054 Msa0737080:CDS 30.0%
TCAAAGCCAAATGAATTTGA+TGG + chr5_1:54036108-54036127 Msa0737080:CDS 30.0%
! TATTGTTTCTCTGTTAACTC+AGG - chr5_1:54036147-54036166 None:intergenic 30.0%
AACACCAAAAAACAAAAGAC+AGG + chr5_1:54036555-54036574 Msa0737080:intron 30.0%
!!! TGTTCCTGTCTTTTGTTTTT+TGG - chr5_1:54036562-54036581 None:intergenic 30.0%
TAAAATAAACCACTTAGCCA+TGG - chr5_1:54036733-54036752 None:intergenic 30.0%
! GATGATGTCTTAAAGCTTTT+CGG + chr5_1:54036909-54036928 Msa0737080:intron 30.0%
! TATTTTATCTGCAAAACCCA+AGG - chr5_1:54036976-54036995 None:intergenic 30.0%
! GGGTTTTGCAGATAAAATAT+CGG + chr5_1:54036977-54036996 Msa0737080:intron 30.0%
! GGTTTTGCAGATAAAATATC+GGG + chr5_1:54036978-54036997 Msa0737080:intron 30.0%
!!! TACCTTGTTTTTCTCTCATT+AGG + chr5_1:54037017-54037036 Msa0737080:intron 30.0%
AACCTAATGAGAGAAAAACA+AGG - chr5_1:54037022-54037041 None:intergenic 30.0%
! TGTAATTAGCTTCATGAACT+TGG + chr5_1:54037113-54037132 Msa0737080:intron 30.0%
ATTTCTTTCAAGAACATGTG+AGG + chr5_1:54037415-54037434 Msa0737080:intron 30.0%
AATACTTTGAACTTGAACAC+AGG + chr5_1:54037564-54037583 Msa0737080:intron 30.0%
! TTAAGAGTGATTGTTAGTCT+TGG + chr5_1:54037612-54037631 Msa0737080:intron 30.0%
CTACTACTTAACAAGATTCA+CGG + chr5_1:54037681-54037700 Msa0737080:intron 30.0%
GTTCCCAAATTCAAAAATTG+AGG - chr5_1:54037899-54037918 None:intergenic 30.0%
AAAAAGCTAGTAGAAGAGAA+GGG + chr5_1:54038181-54038200 Msa0737080:CDS 30.0%
GTCCATAAATAGAGATATTG+AGG + chr5_1:54038210-54038229 Msa0737080:CDS 30.0%
CTCCTCAATATCTCTATTTA+TGG - chr5_1:54038215-54038234 None:intergenic 30.0%
GAAAATTGAAGAATGTGTCA+AGG + chr5_1:54038315-54038334 Msa0737080:CDS 30.0%
GGATAACATTTCAAAACAGA+TGG + chr5_1:54038438-54038457 Msa0737080:CDS 30.0%
!!! AAACAGAAGCATTTTGAAAG+CGG + chr5_1:54038505-54038524 Msa0737080:intron 30.0%
GAATTTAAAAGCCAAGTGAA+GGG + chr5_1:54038596-54038615 Msa0737080:CDS 30.0%
AATTTAAAAGCCAAGTGAAG+GGG + chr5_1:54038597-54038616 Msa0737080:CDS 30.0%
! GCAATTGAAAGTACAAGTTA+AGG + chr5_1:54038679-54038698 Msa0737080:CDS 30.0%
! AGTGAAGGAGTTTAAAACAT+AGG + chr5_1:54038857-54038876 Msa0737080:intron 30.0%
AAAACATAGGAGGAATTCAA+AGG + chr5_1:54038870-54038889 Msa0737080:intron 30.0%
TTTATTTAAGCTCCATAACC+CGG - chr5_1:54038896-54038915 None:intergenic 30.0%
! AAAGAAGCAATTTGAAATCC+AGG + chr5_1:54038917-54038936 Msa0737080:intron 30.0%
TTAATCATTCGGTTATCACA+AGG - chr5_1:54039372-54039391 None:intergenic 30.0%
CTACACAAGGTTTAATCATT+CGG - chr5_1:54039383-54039402 None:intergenic 30.0%
GAATTTCACACATGATTTGA+AGG + chr5_1:54039416-54039435 Msa0737080:CDS 30.0%
!!! CTACTGGTTTTGTCAATTTA+TGG + chr5_1:54039486-54039505 Msa0737080:CDS 30.0%
!! AACTCAAAGTTTTGTGGTGT+TGG + chr5_1:54035255-54035274 Msa0737080:CDS 35.0%
TCGTCATCATCATAAGAAAC+TGG - chr5_1:54035315-54035334 None:intergenic 35.0%
TGTTCAAGGAACTAATCGAA+TGG - chr5_1:54035454-54035473 None:intergenic 35.0%
ATATTCCTTTGAGTCGGTTA+GGG + chr5_1:54035525-54035544 Msa0737080:intron 35.0%
!!! AAAGAAGCATTTTGATAGCC+GGG + chr5_1:54035664-54035683 Msa0737080:intron 35.0%
AAGAGAGGCAATTTAAAGGA+CGG + chr5_1:54035705-54035724 Msa0737080:CDS 35.0%
CAGAAAAGAAGCAATTCGAA+GGG + chr5_1:54035786-54035805 Msa0737080:CDS 35.0%
TTGATTGAAACTCCTTCACT+TGG - chr5_1:54035853-54035872 None:intergenic 35.0%
GAAGGAGTTTCAATCAACAA+AGG + chr5_1:54035856-54035875 Msa0737080:intron 35.0%
GGAATTTGAATCAAAAGAGG+AGG + chr5_1:54035901-54035920 Msa0737080:intron 35.0%
!!! CAATGGTTTTGTAAGCCAAA+TGG + chr5_1:54035948-54035967 Msa0737080:CDS 35.0%
!! AACTGTTTCTTTTTATGGCG+TGG + chr5_1:54036253-54036272 Msa0737080:intron 35.0%
GTTATCATAGTAGTCCATCT+CGG + chr5_1:54036387-54036406 Msa0737080:intron 35.0%
! TTCGCCTTCTTGAACATTTT+TGG + chr5_1:54036674-54036693 Msa0737080:intron 35.0%
GCATCCAAAAATGTTCAAGA+AGG - chr5_1:54036681-54036700 None:intergenic 35.0%
AGTTAATGAAAACTCTTCGG+TGG + chr5_1:54036830-54036849 Msa0737080:intron 35.0%
CTACTCCTTCTGTCAATTTA+TGG + chr5_1:54036864-54036883 Msa0737080:intron 35.0%
CCAATCCATAAATTGACAGA+AGG - chr5_1:54036872-54036891 None:intergenic 35.0%
CCTTCTGTCAATTTATGGAT+TGG + chr5_1:54036869-54036888 Msa0737080:intron 35.0%
TAACAAAAGGCTTAGCAGAT+TGG - chr5_1:54037236-54037255 None:intergenic 35.0%
! ATAGTTGTTCTGGTCAGTTT+TGG + chr5_1:54037271-54037290 Msa0737080:intron 35.0%
AATGTTTAAGAGCAGTTGCA+AGG + chr5_1:54037449-54037468 Msa0737080:intron 35.0%
TAAAACAACCATGATTCGTG+TGG - chr5_1:54037484-54037503 None:intergenic 35.0%
ATCGCAAAATGGTATGAAGA+TGG - chr5_1:54037537-54037556 None:intergenic 35.0%
GGATAATGTCAGTGATAAAG+CGG + chr5_1:54037585-54037604 Msa0737080:intron 35.0%
CTTGTTAAGTAGTAGTTCCT+TGG - chr5_1:54037676-54037695 None:intergenic 35.0%
! TTAGGTTGTTGTGTATTTGG+AGG - chr5_1:54037772-54037791 None:intergenic 35.0%
! AGGTTAGGTTGTTGTGTATT+TGG - chr5_1:54037775-54037794 None:intergenic 35.0%
TACACAACAACCTAACCTAT+AGG + chr5_1:54037777-54037796 Msa0737080:intron 35.0%
! ACTATAATGGCTCTGTTAAG+AGG + chr5_1:54037933-54037952 Msa0737080:CDS 35.0%
GATAACAACAATGTCTTGCA+CGG + chr5_1:54037995-54038014 Msa0737080:intron 35.0%
!! GCTTTCATTTTGGAGGAAAT+AGG - chr5_1:54038076-54038095 None:intergenic 35.0%
! TATGGTAGACGCTTTCATTT+TGG - chr5_1:54038086-54038105 None:intergenic 35.0%
! TTCAAGTTCTTTCTTCATCG+AGG - chr5_1:54038128-54038147 None:intergenic 35.0%
ACTCATTTGAGGAATGCAAA+AGG + chr5_1:54038158-54038177 Msa0737080:CDS 35.0%
GAAAAAGCTAGTAGAAGAGA+AGG + chr5_1:54038180-54038199 Msa0737080:CDS 35.0%
TATTTGATGGAGGACATGAT+TGG + chr5_1:54038364-54038383 Msa0737080:CDS 35.0%
!!! AGCATTTTGAAAGCGGATTA+AGG + chr5_1:54038512-54038531 Msa0737080:intron 35.0%
GGAATTTAAAAGCCAAGTGA+AGG + chr5_1:54038595-54038614 Msa0737080:CDS 35.0%
TCTAAAGAGAAGCAAAGTGA+TGG + chr5_1:54038710-54038729 Msa0737080:CDS 35.0%
! GAAATTTGATGGACAAGTGA+AGG + chr5_1:54038842-54038861 Msa0737080:intron 35.0%
! GAAGGAGTTTAAAACATAGG+AGG + chr5_1:54038860-54038879 Msa0737080:intron 35.0%
TTGACTTTAAATCCTCAACC+TGG - chr5_1:54038938-54038957 None:intergenic 35.0%
AGAAGTAACTTGAAGAACGA+TGG + chr5_1:54038961-54038980 Msa0737080:intron 35.0%
!! TAAACATGATGGACAACCAA+AGG + chr5_1:54039049-54039068 Msa0737080:intron 35.0%
TAACCTGATCTGCATATATG+AGG + chr5_1:54039209-54039228 Msa0737080:intron 35.0%
AACCTGATCTGCATATATGA+GGG + chr5_1:54039210-54039229 Msa0737080:intron 35.0%
CTGAAAACTTCTTCCATCAA+TGG - chr5_1:54039299-54039318 None:intergenic 35.0%
! TTGCAGATTGTCTAGAATGT+CGG - chr5_1:54039341-54039360 None:intergenic 35.0%
CGAATGATTAAACCTTGTGT+AGG + chr5_1:54039381-54039400 Msa0737080:intron 35.0%
GAAAATTCTTTGGCGGTTAT+TGG + chr5_1:54039459-54039478 Msa0737080:CDS 35.0%
! GTGTTGGTGAGAAAAGTACA+TGG + chr5_1:54035271-54035290 Msa0737080:CDS 40.0%
TACATGGCATTCAGAAGTGA+GGG + chr5_1:54035287-54035306 Msa0737080:CDS 40.0%
! ACGGTAACCTTTTCTGACAA+AGG - chr5_1:54035342-54035361 None:intergenic 40.0%
TTTGTCAGAAAAGGTTACCG+TGG + chr5_1:54035341-54035360 Msa0737080:intron 40.0%
GATATTCCTTTGAGTCGGTT+AGG + chr5_1:54035524-54035543 Msa0737080:intron 40.0%
TTGAATCCAACTCCTTAACC+CGG - chr5_1:54035685-54035704 None:intergenic 40.0%
AGGAGTTGGATTCAAAAGAG+AGG + chr5_1:54035690-54035709 Msa0737080:CDS 40.0%
AGAGAGGCAATTTAAAGGAC+GGG + chr5_1:54035706-54035725 Msa0737080:CDS 40.0%
GCAGAAAAGAAGCAATTCGA+AGG + chr5_1:54035785-54035804 Msa0737080:CDS 40.0%
GGAGTTTCAATCAACAAAGG+AGG + chr5_1:54035859-54035878 Msa0737080:intron 40.0%
TCAACAAAGGAGGAGTTTGA+AGG + chr5_1:54035869-54035888 Msa0737080:intron 40.0%
!!! TTGTTTTAGCCATGGCTAAG+TGG + chr5_1:54036721-54036740 Msa0737080:intron 40.0%
ACATCATCTTCGTCGAAAGA+AGG - chr5_1:54036897-54036916 None:intergenic 40.0%
AACATAGTTGTAGAGCTGCT+TGG + chr5_1:54036948-54036967 Msa0737080:intron 40.0%
ACATAGTTGTAGAGCTGCTT+GGG + chr5_1:54036949-54036968 Msa0737080:intron 40.0%
GATTCTCTACAAAATCTGCG+AGG - chr5_1:54037317-54037336 None:intergenic 40.0%
CGATAACAACCTAGAATCCA+AGG + chr5_1:54037656-54037675 Msa0737080:intron 40.0%
GTAGTAGTTCCTTGGATTCT+AGG - chr5_1:54037668-54037687 None:intergenic 40.0%
CTACTTAACAAGATTCACGG+TGG + chr5_1:54037684-54037703 Msa0737080:intron 40.0%
CAACCTAACCTATAGGTATG+TGG + chr5_1:54037784-54037803 Msa0737080:intron 40.0%
ATGATGTTCCTTCGTTAGCA+CGG + chr5_1:54037870-54037889 Msa0737080:CDS 40.0%
! ATAATGGCTCTGTTAAGAGG+AGG + chr5_1:54037936-54037955 Msa0737080:CDS 40.0%
! TAATGGCTCTGTTAAGAGGA+GGG + chr5_1:54037937-54037956 Msa0737080:CDS 40.0%
! TGTCAAGGATTTTGTAGCCA+AGG + chr5_1:54038330-54038349 Msa0737080:CDS 40.0%
! AAGGATTTTGTAGCCAAGGA+AGG + chr5_1:54038334-54038353 Msa0737080:CDS 40.0%
! AGGATTTTGTAGCCAAGGAA+GGG + chr5_1:54038335-54038354 Msa0737080:CDS 40.0%
AGATCTCCAGACAAAAGAGT+TGG + chr5_1:54038399-54038418 Msa0737080:CDS 40.0%
! GAAGTTCCAACTCTTTTGTC+TGG - chr5_1:54038408-54038427 None:intergenic 40.0%
GTTGGAACTTCGTGAAATCA+TGG + chr5_1:54038417-54038436 Msa0737080:CDS 40.0%
TGAAAGCCAAATGAATGAGC+TGG + chr5_1:54038465-54038484 Msa0737080:CDS 40.0%
CATTCACCAGCTCATTCATT+TGG - chr5_1:54038474-54038493 None:intergenic 40.0%
GAATGAGCTGGTGAATGATT+TGG + chr5_1:54038477-54038496 Msa0737080:intron 40.0%
!!! GAAGAGTTTTGAAAGCCAAG+TGG + chr5_1:54038634-54038653 Msa0737080:CDS 40.0%
AGGATCTCAAATCACAAGAG+TGG + chr5_1:54038657-54038676 Msa0737080:CDS 40.0%
TTGATTCAAACCCCTTCACT+CGG - chr5_1:54038736-54038755 None:intergenic 40.0%
GAAGGGGTTTGAATCAAAGA+AGG + chr5_1:54038739-54038758 Msa0737080:CDS 40.0%
GAAGCTGGAATCAGAAAAGA+AGG + chr5_1:54038784-54038803 Msa0737080:CDS 40.0%
! GCAATTTGAAATCCAGGTTG+AGG + chr5_1:54038923-54038942 Msa0737080:intron 40.0%
TCAGATTGAAGGAGAAGACA+AGG + chr5_1:54039007-54039026 Msa0737080:intron 40.0%
!! GAAGTTAGCTCTACCATTGA+TGG + chr5_1:54039283-54039302 Msa0737080:intron 40.0%
!! GAATGTCGGTTTCATCACTT+GGG - chr5_1:54039327-54039346 None:intergenic 40.0%
!! AGAATGTCGGTTTCATCACT+TGG - chr5_1:54039328-54039347 None:intergenic 40.0%
AATGCTTCTTCTCCTACACA+AGG - chr5_1:54039396-54039415 None:intergenic 40.0%
GTACATGGCATTCAGAAGTG+AGG + chr5_1:54035286-54035305 Msa0737080:CDS 45.0%
CGATGCTCCTTTGTCAGAAA+AGG + chr5_1:54035332-54035351 Msa0737080:CDS 45.0%
CAGAACGAGAATCAGCTCAA+AGG + chr5_1:54035575-54035594 Msa0737080:intron 45.0%
!! GCATTTTGATAGCCGGGTTA+AGG + chr5_1:54035670-54035689 Msa0737080:CDS 45.0%
GCAATTTAAAGGACGGGTGA+AGG + chr5_1:54035712-54035731 Msa0737080:CDS 45.0%
GTTGGTTGAAGTCCAAGTGA+AGG + chr5_1:54035838-54035857 Msa0737080:intron 45.0%
CCATCAAACGGCTTCTCTTT+CGG - chr5_1:54036069-54036088 None:intergenic 45.0%
AAAGAGAAGCCGTTTGATGG+AGG + chr5_1:54036069-54036088 Msa0737080:CDS 45.0%
TCCTTCACACCTCCATCAAA+CGG - chr5_1:54036081-54036100 None:intergenic 45.0%
TAGTAGTCCATCTCGGATAG+CGG + chr5_1:54036394-54036413 Msa0737080:intron 45.0%
! GAAACCATAAGCGCTGCTAT+CGG + chr5_1:54036605-54036624 Msa0737080:intron 45.0%
ACGATCAGAGTAGCCAATAG+CGG - chr5_1:54036631-54036650 None:intergenic 45.0%
GAAAACTCTTCGGTGGTTCA+TGG + chr5_1:54036837-54036856 Msa0737080:intron 45.0%
GCAGCTCTACAACTATGTTG+TGG - chr5_1:54036947-54036966 None:intergenic 45.0%
CATAGTTGTAGAGCTGCTTG+GGG + chr5_1:54036950-54036969 Msa0737080:intron 45.0%
AACCAACTCCACACGAATCA+TGG + chr5_1:54037473-54037492 Msa0737080:intron 45.0%
AACCATGATTCGTGTGGAGT+TGG - chr5_1:54037478-54037497 None:intergenic 45.0%
GGTTGTTATCGCCAATATGC+TGG - chr5_1:54037647-54037666 None:intergenic 45.0%
CTGCCACATACCTATAGGTT+AGG - chr5_1:54037790-54037809 None:intergenic 45.0%
CTACTACACTCCCAGTTAAG+AGG + chr5_1:54037963-54037982 Msa0737080:intron 45.0%
TCATCGTCATCATCCAGTGA+CGG - chr5_1:54038046-54038065 None:intergenic 45.0%
! GGTAGACGCTTTCATTTTGG+AGG - chr5_1:54038083-54038102 None:intergenic 45.0%
GAATTTCGCAAGCAAGTGCA+GGG + chr5_1:54038292-54038311 Msa0737080:CDS 45.0%
AATTTCGCAAGCAAGTGCAG+GGG + chr5_1:54038293-54038312 Msa0737080:CDS 45.0%
GTCAAAGAGAAGCAGCTTGA+TGG + chr5_1:54038542-54038561 Msa0737080:intron 45.0%
! AGGAGCATGAATCAAAGCAG+AGG + chr5_1:54038573-54038592 Msa0737080:intron 45.0%
GGAGCATGAATCAAAGCAGA+GGG + chr5_1:54038574-54038593 Msa0737080:intron 45.0%
TAGATTCTAGCCCCTTCACT+TGG - chr5_1:54038610-54038629 None:intergenic 45.0%
!!! GAGTTTTGAAAGCCAAGTGG+AGG + chr5_1:54038637-54038656 Msa0737080:CDS 45.0%
! GTGATTTGAGATCCTCCACT+TGG - chr5_1:54038652-54038671 None:intergenic 45.0%
TGAAGTCCAAGTGAAGAAGC+TGG + chr5_1:54038769-54038788 Msa0737080:CDS 45.0%
CTGATTCCAGCTTCTTCACT+TGG - chr5_1:54038778-54038797 None:intergenic 45.0%
!! GGATTTTGAGAGTCGACTGA+AGG + chr5_1:54038805-54038824 Msa0737080:intron 45.0%
CATAGGAGGAATTCAAAGGC+CGG + chr5_1:54038874-54038893 Msa0737080:intron 45.0%
ATAGGAGGAATTCAAAGGCC+GGG + chr5_1:54038875-54038894 Msa0737080:intron 45.0%
TCTGTCAACTCATGCTCCTT+TGG - chr5_1:54039068-54039087 None:intergenic 45.0%
CTCCCTCATATATGCAGATC+AGG - chr5_1:54039215-54039234 None:intergenic 45.0%
!!! GGCGGTTATTGGTTTTCTAC+TGG + chr5_1:54039470-54039489 Msa0737080:CDS 45.0%
!! ACTTATTATATTAAATATAA+TGG + chr5_1:54036503-54036522 Msa0737080:intron 5.0%
! AAGCTCCCTAACCGACTCAA+AGG - chr5_1:54035533-54035552 None:intergenic 50.0%
TGATAGCCGGGTTAAGGAGT+TGG + chr5_1:54035676-54035695 Msa0737080:CDS 50.0%
CAAAGGAGGAGTTTGAAGGC+CGG + chr5_1:54035873-54035892 Msa0737080:intron 50.0%
GGAGTTTGAAGGCCGGATAA+AGG + chr5_1:54035880-54035899 Msa0737080:intron 50.0%
GCTCGAATGCAGAAGCTCAA+TGG + chr5_1:54035931-54035950 Msa0737080:intron 50.0%
TGAAGAATGGGGGAAAGAGC+TGG + chr5_1:54035999-54036018 Msa0737080:CDS 50.0%
CCGAAAGAGAAGCCGTTTGA+TGG + chr5_1:54036066-54036085 Msa0737080:CDS 50.0%
GGAGCTGTTGTCCAGCATAT+TGG + chr5_1:54037633-54037652 Msa0737080:intron 50.0%
GCATGCTGCCACATACCTAT+AGG - chr5_1:54037795-54037814 None:intergenic 50.0%
TGAGGAAACCGTGCTAACGA+AGG - chr5_1:54037881-54037900 None:intergenic 50.0%
CGAATTTCGCAAGCAAGTGC+AGG + chr5_1:54038291-54038310 Msa0737080:CDS 50.0%
CAAATAGAGCTGCCCTTCCT+TGG - chr5_1:54038350-54038369 None:intergenic 50.0%
GGAAGGGCAGCTCTATTTGA+TGG + chr5_1:54038351-54038370 Msa0737080:CDS 50.0%
AGGGCAGCTCTATTTGATGG+AGG + chr5_1:54038354-54038373 Msa0737080:CDS 50.0%
CAAAGTGATGGCCGAGTGAA+GGG + chr5_1:54038722-54038741 Msa0737080:CDS 50.0%
AAAGTGATGGCCGAGTGAAG+GGG + chr5_1:54038723-54038742 Msa0737080:CDS 50.0%
GGAATTCAAAGGCCGGGTTA+TGG + chr5_1:54038881-54038900 Msa0737080:intron 50.0%
! GCCGTTTGATGGAGGTGTGA+AGG + chr5_1:54036077-54036096 Msa0737080:CDS 55.0%
!! ATTCAAGGTGTCGCCGTCAC+TGG + chr5_1:54038030-54038049 Msa0737080:intron 55.0%
! GAAGCAGCTTGATGGTCGAG+TGG + chr5_1:54038550-54038569 Msa0737080:intron 55.0%
GCAAAGTGATGGCCGAGTGA+AGG + chr5_1:54038721-54038740 Msa0737080:CDS 55.0%
CTACGCACCGCTATCCGAGA+TGG - chr5_1:54036404-54036423 None:intergenic 60.0%
! TCTCGGATAGCGGTGCGTAG+CGG + chr5_1:54036404-54036423 Msa0737080:intron 60.0%
TGTAGAGCTGCTTGGGGCCT+TGG + chr5_1:54036956-54036975 Msa0737080:intron 60.0%
GTAGAGCTGCTTGGGGCCTT+GGG + chr5_1:54036957-54036976 Msa0737080:intron 60.0%
! GCAGCTTGATGGTCGAGTGG+AGG + chr5_1:54038553-54038572 Msa0737080:intron 60.0%
GCGGCCGATAGCAGCGCTTA+TGG - chr5_1:54036612-54036631 None:intergenic 65.0%
GCGCTGCTATCGGCCGCTAT+TGG + chr5_1:54036615-54036634 Msa0737080:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 54035213 54039584 54035213 ID=Msa0737080;Name=Msa0737080
chr5_1 mRNA 54035213 54039584 54035213 ID=Msa0737080-mRNA-1;Parent=Msa0737080;Name=Msa0737080-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|0.83|0.71|7|0|486
chr5_1 exon 54035213 54035353 54035213 ID=Msa0737080-mRNA-1:exon:15188;Parent=Msa0737080-mRNA-1
chr5_1 exon 54035668 54035853 54035668 ID=Msa0737080-mRNA-1:exon:15189;Parent=Msa0737080-mRNA-1
chr5_1 exon 54035943 54036207 54035943 ID=Msa0737080-mRNA-1:exon:15190;Parent=Msa0737080-mRNA-1
chr5_1 exon 54037864 54037976 54037864 ID=Msa0737080-mRNA-1:exon:15191;Parent=Msa0737080-mRNA-1
chr5_1 exon 54038136 54038486 54038136 ID=Msa0737080-mRNA-1:exon:15192;Parent=Msa0737080-mRNA-1
chr5_1 exon 54038593 54038815 54038593 ID=Msa0737080-mRNA-1:exon:15193;Parent=Msa0737080-mRNA-1
chr5_1 exon 54039403 54039584 54039403 ID=Msa0737080-mRNA-1:exon:15194;Parent=Msa0737080-mRNA-1
chr5_1 CDS 54035213 54035353 54035213 ID=Msa0737080-mRNA-1:cds;Parent=Msa0737080-mRNA-1
chr5_1 CDS 54035668 54035853 54035668 ID=Msa0737080-mRNA-1:cds;Parent=Msa0737080-mRNA-1
chr5_1 CDS 54035943 54036207 54035943 ID=Msa0737080-mRNA-1:cds;Parent=Msa0737080-mRNA-1
chr5_1 CDS 54037864 54037976 54037864 ID=Msa0737080-mRNA-1:cds;Parent=Msa0737080-mRNA-1
chr5_1 CDS 54038136 54038486 54038136 ID=Msa0737080-mRNA-1:cds;Parent=Msa0737080-mRNA-1
chr5_1 CDS 54038593 54038815 54038593 ID=Msa0737080-mRNA-1:cds;Parent=Msa0737080-mRNA-1
chr5_1 CDS 54039403 54039584 54039403 ID=Msa0737080-mRNA-1:cds;Parent=Msa0737080-mRNA-1
Gene Sequence

>Msa0737080

ATGCTACTGTTGAAGAATATAATTGATTTTAAAGGTTCTGATAACTCAAAGTTTTGTGGTGTTGGTGAGAAAAGTACATGGCATTCAGAAGTGAGGGATCCAGTTTCTTATGATGATGACGATGCTCCTTTGTCAGAAAAGAAGCATTTTGATAGCCGGGTTAAGGAGTTGGATTCAAAAGAGAGGCAATTTAAAGGACGGGTGAAGGAGTTTGAATTAAAAGAGGAGCAATTCAAAGGTCAAGTGAAATCGCTCGAAGCAGAAAAGAAGCAATTCGAAGGGCAATTGAAAGATTTCCGATCAAAAGAAAAGTTGGTTGAAGTCCAAAAGCTCAATGGTTTTGTAAGCCAAATGGAAGATTTGAAATCAGAAGACAAACATTATGAAGAATGGGGGAAAGAGCTGGAGTCAAAAGATCATATGTTCAAAGTAGATGTGAAGGTGCTCAAGCCGAAAGAGAAGCCGTTTGATGGAGGTGTGAAGGATATTGAGTCAAAGCCAAATGAATTTGATGGACAATTTAAGCTACCTGAGTTAACAGAGAAACAATATGATGCATTAATAGAACCATTTGATGAAGAAACAGAATTGGATGATGATGATGTTCCTTCGTTAGCACGGTTTCCTCAATTTTTGAATTTGGGAACAAGCAGTAATAATAACTATAATGGCTCTGTTAAGAGGAGGGATGCTACTACACTCCCAAAAGAACTTGAATTTGAAGAAAACTCATTTGAGGAATGCAAAAGGAAAAAGCTAGTAGAAGAGAAGGGATTGCAGTCCATAAATAGAGATATTGAGGAGTGCTTCAAAGAGCTTGAAAATAAGAAAAAAGAAATTAGTTGTGTTGGAAGAATTAACGAATTTCGCAAGCAAGTGCAGGGGAAAATTGAAGAATGTGTCAAGGATTTTGTAGCCAAGGAAGGGCAGCTCTATTTGATGGAGGACATGATTGGAGAGCGCAAGCAAGATCTCCAGACAAAAGAGTTGGAACTTCGTGAAATCATGGATAACATTTCAAAACAGATGGAATTTGAAAGCCAAATGAATGAGCTGAGGGAATTTAAAAGCCAAGTGAAGGGGCTAGAATCTAAAAAGAAGAGTTTTGAAAGCCAAGTGGAGGATCTCAAATCACAAGAGTGGCAATTGAAAGTACAAGTTAAGGAACTTGAGTCTAAAGAGAAGCAAAGTGATGGCCGAGTGAAGGGGTTTGAATCAAAGAAGGATGAATTTGAAGTCCAAGTGAAGAAGCTGGAATCAGAAAAGAAGGATTTTGAGAGAGAAGAAGCATTGAATTTCACACATGATTTGAAGGCTAACATGAAAGAAAATACTGAAAATTCTTTGGCGGTTATTGGTTTTCTACTGGTTTTGTCAATTTATGGATTGATTACTTCTTTCGATGAAGATGAAGTCTTGAAGATTTATGCATTTGTTGCTCAGCACAAGATAGCTGTTTAG
Protein sequence

>Msa0737080

MLLLKNIIDFKGSDNSKFCGVGEKSTWHSEVRDPVSYDDDDAPLSEKKHFDSRVKELDSKERQFKGRVKEFELKEEQFKGQVKSLEAEKKQFEGQLKDFRSKEKLVEVQKLNGFVSQMEDLKSEDKHYEEWGKELESKDHMFKVDVKVLKPKEKPFDGGVKDIESKPNEFDGQFKLPELTEKQYDALIEPFDEETELDDDDVPSLARFPQFLNLGTSSNNNYNGSVKRRDATTLPKELEFEENSFEECKRKKLVEEKGLQSINRDIEECFKELENKKKEISCVGRINEFRKQVQGKIEECVKDFVAKEGQLYLMEDMIGERKQDLQTKELELREIMDNISKQMEFESQMNELREFKSQVKGLESKKKSFESQVEDLKSQEWQLKVQVKELESKEKQSDGRVKGFESKKDEFEVQVKKLESEKKDFEREEALNFTHDLKANMKENTENSLAVIGFLLVLSIYGLITSFDEDEVLKIYAFVAQHKIAV*