Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0778680 | KEH39241.1 | 67.123 | 73 | 24 | 0 | 181 | 253 | 503 | 575 | 5.77e-14 | 83.2 |
| Msa0778680 | KEH39241.1 | 70.466 | 193 | 37 | 2 | 1 | 193 | 137 | 309 | 3.71e-69 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0778680 | A0A072VCB2 | 67.123 | 73 | 24 | 0 | 181 | 253 | 503 | 575 | 2.76e-14 | 83.2 |
| Msa0778680 | A0A072VCB2 | 70.466 | 193 | 37 | 2 | 1 | 193 | 137 | 309 | 1.77e-69 | 234 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0737080 | Msa0778680 | 0.890676 | 7.941458e-74 | -8.615850e-47 |
| Msa0737090 | Msa0778680 | 0.860315 | 2.251005e-63 | -8.615850e-47 |
| Msa0778670 | Msa0778680 | 0.824750 | 6.815417e-54 | -8.615850e-47 |
| Msa0778680 | Msa0778690 | 0.866520 | 2.685265e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0778680 | MtrunA17_Chr2g0325781 | 58.947 | 190 | 72 | 1 | 1 | 190 | 108 | 291 | 4.27e-61 | 194 |
| Msa0778680 | MtrunA17_Chr2g0325701 | 61.658 | 193 | 54 | 2 | 1 | 193 | 128 | 300 | 3.37e-58 | 194 |
| Msa0778680 | MtrunA17_Chr2g0325701 | 58.904 | 73 | 29 | 1 | 181 | 253 | 505 | 576 | 1.34e-13 | 70.1 |
| Msa0778680 | MtrunA17_Chr7g0235901 | 50.655 | 229 | 77 | 2 | 1 | 193 | 26 | 254 | 1.82e-57 | 185 |
| Msa0778680 | MtrunA17_Chr2g0325231 | 51.528 | 229 | 75 | 2 | 1 | 193 | 115 | 343 | 5.00e-54 | 186 |
| Msa0778680 | MtrunA17_Chr2g0325231 | 34.182 | 275 | 128 | 11 | 21 | 253 | 593 | 856 | 1.05e-20 | 91.3 |
| Msa0778680 | MtrunA17_Chr2g0325231 | 40.722 | 194 | 94 | 5 | 3 | 193 | 389 | 564 | 2.48e-18 | 84.3 |
| Msa0778680 | MtrunA17_Chr2g0325231 | 39.521 | 167 | 82 | 5 | 26 | 185 | 514 | 668 | 1.18e-13 | 70.5 |
| Msa0778680 | MtrunA17_Chr5g0416271 | 48.117 | 239 | 78 | 2 | 1 | 193 | 58 | 296 | 7.96e-53 | 178 |
| Msa0778680 | MtrunA17_Chr5g0416271 | 63.333 | 60 | 22 | 0 | 194 | 253 | 410 | 469 | 1.39e-19 | 87.4 |
| Msa0778680 | MtrunA17_Chr2g0325691 | 53.478 | 230 | 70 | 3 | 1 | 193 | 116 | 345 | 1.45e-52 | 181 |
| Msa0778680 | MtrunA17_Chr2g0325691 | 35.912 | 181 | 99 | 5 | 26 | 192 | 449 | 626 | 1.13e-12 | 67.4 |
| Msa0778680 | MtrunA17_Chr2g0325691 | 38.554 | 166 | 83 | 5 | 37 | 195 | 306 | 459 | 3.62e-12 | 65.9 |
| Msa0778680 | MtrunA17_Chr2g0325741 | 56.044 | 182 | 60 | 2 | 1 | 182 | 144 | 305 | 2.44e-51 | 169 |
| Msa0778680 | MtrunA17_Chr2g0325351 | 53.333 | 180 | 71 | 2 | 14 | 193 | 137 | 303 | 2.10e-44 | 158 |
| Msa0778680 | MtrunA17_Chr2g0325351 | 63.014 | 73 | 27 | 0 | 181 | 253 | 500 | 572 | 9.19e-16 | 76.6 |
| Msa0778680 | MtrunA17_Chr2g0325721 | 48.000 | 225 | 85 | 4 | 1 | 193 | 102 | 326 | 3.88e-44 | 155 |
| Msa0778680 | MtrunA17_Chr2g0325281 | 41.423 | 239 | 93 | 2 | 1 | 192 | 82 | 320 | 1.84e-41 | 149 |
| Msa0778680 | MtrunA17_Chr2g0325281 | 38.983 | 177 | 83 | 5 | 24 | 190 | 423 | 584 | 6.08e-11 | 62.0 |
| Msa0778680 | MtrunA17_Chr2g0325221 | 43.874 | 253 | 79 | 5 | 2 | 192 | 142 | 393 | 1.19e-39 | 145 |
| Msa0778680 | MtrunA17_Chr2g0325221 | 32.381 | 210 | 99 | 5 | 26 | 193 | 256 | 464 | 2.24e-12 | 66.6 |
| Msa0778680 | MtrunA17_Chr2g0325621 | 42.922 | 219 | 96 | 3 | 1 | 193 | 87 | 302 | 2.84e-39 | 144 |
| Msa0778680 | MtrunA17_Chr2g0325621 | 60.274 | 73 | 29 | 0 | 181 | 253 | 473 | 545 | 7.71e-15 | 73.9 |
| Msa0778680 | MtrunA17_Chr2g0325321 | 46.698 | 212 | 94 | 4 | 1 | 193 | 82 | 293 | 7.38e-39 | 143 |
| Msa0778680 | MtrunA17_Chr2g0325321 | 37.931 | 174 | 81 | 5 | 24 | 193 | 423 | 573 | 2.91e-11 | 63.2 |
| Msa0778680 | MtrunA17_Chr2g0325861 | 41.107 | 253 | 89 | 3 | 1 | 193 | 110 | 362 | 3.80e-38 | 141 |
| Msa0778680 | MtrunA17_Chr2g0325861 | 67.568 | 74 | 24 | 0 | 120 | 193 | 471 | 544 | 1.72e-19 | 87.4 |
| Msa0778680 | MtrunA17_Chr2g0325861 | 56.164 | 73 | 32 | 0 | 181 | 253 | 734 | 806 | 3.92e-19 | 86.7 |
| Msa0778680 | MtrunA17_Chr2g0325861 | 40.838 | 191 | 82 | 6 | 24 | 195 | 450 | 628 | 1.99e-17 | 81.6 |
| Msa0778680 | MtrunA17_Chr2g0325811 | 47.573 | 206 | 91 | 5 | 1 | 194 | 136 | 336 | 6.82e-35 | 132 |
| Msa0778680 | MtrunA17_Chr2g0325811 | 53.425 | 73 | 34 | 0 | 181 | 253 | 651 | 723 | 3.55e-21 | 92.4 |
| Msa0778680 | MtrunA17_Chr2g0325711 | 44.712 | 208 | 97 | 3 | 1 | 193 | 114 | 318 | 3.02e-32 | 124 |
| Msa0778680 | MtrunA17_Chr2g0325711 | 61.667 | 60 | 23 | 0 | 194 | 253 | 662 | 721 | 3.11e-19 | 86.7 |
| Msa0778680 | MtrunA17_Chr2g0333341 | 40.562 | 249 | 85 | 7 | 1 | 193 | 157 | 398 | 9.96e-32 | 122 |
| Msa0778680 | MtrunA17_Chr2g0333341 | 33.746 | 323 | 122 | 10 | 23 | 253 | 273 | 595 | 9.72e-22 | 94.0 |
| Msa0778680 | MtrunA17_Chr2g0325661 | 36.940 | 268 | 106 | 6 | 1 | 210 | 142 | 404 | 7.81e-27 | 108 |
| Msa0778680 | MtrunA17_Chr2g0325661 | 73.333 | 60 | 16 | 0 | 194 | 253 | 701 | 760 | 6.93e-11 | 62.0 |
| Msa0778680 | MtrunA17_Chr2g0325361 | 38.667 | 225 | 106 | 4 | 1 | 193 | 79 | 303 | 1.57e-26 | 108 |
| Msa0778680 | MtrunA17_Chr2g0325361 | 41.579 | 190 | 80 | 4 | 24 | 193 | 507 | 685 | 8.14e-19 | 85.5 |
| Msa0778680 | MtrunA17_Chr2g0325361 | 37.838 | 185 | 94 | 5 | 26 | 193 | 365 | 545 | 2.29e-14 | 72.4 |
| Msa0778680 | MtrunA17_Chr2g0325361 | 35.685 | 241 | 87 | 9 | 4 | 193 | 364 | 587 | 1.45e-13 | 70.1 |
| Msa0778680 | MtrunA17_Chr2g0325361 | 38.119 | 202 | 74 | 7 | 38 | 193 | 433 | 629 | 6.53e-12 | 65.1 |
| Msa0778680 | MtrunA17_Chr6g0471251 | 38.164 | 207 | 113 | 3 | 1 | 192 | 139 | 345 | 1.95e-26 | 107 |
| Msa0778680 | MtrunA17_Chr6g0471251 | 60.000 | 60 | 24 | 0 | 194 | 253 | 592 | 651 | 1.55e-17 | 81.6 |
| Msa0778680 | MtrunA17_Chr2g0325651 | 41.791 | 201 | 99 | 5 | 4 | 189 | 116 | 313 | 4.07e-26 | 105 |
| Msa0778680 | MtrunA17_Chr2g0325261 | 40.777 | 206 | 104 | 5 | 3 | 193 | 101 | 303 | 5.30e-25 | 100 |
| Msa0778680 | MtrunA17_Chr2g0325341 | 40.777 | 206 | 104 | 5 | 3 | 193 | 101 | 303 | 5.30e-25 | 100 |
| Msa0778680 | MtrunA17_Chr5g0434741 | 38.424 | 203 | 101 | 5 | 3 | 187 | 101 | 297 | 1.95e-23 | 96.3 |
| Msa0778680 | MtrunA17_Chr2g0325761 | 37.131 | 237 | 91 | 5 | 14 | 192 | 150 | 386 | 2.45e-23 | 98.6 |
| Msa0778680 | MtrunA17_Chr5g0434761 | 60.274 | 73 | 29 | 0 | 181 | 253 | 77 | 149 | 4.94e-21 | 89.4 |
| Msa0778680 | MtrunA17_Chr2g0280141 | 54.795 | 73 | 33 | 0 | 181 | 253 | 630 | 702 | 1.62e-20 | 90.5 |
| Msa0778680 | MtrunA17_Chr2g0280141 | 34.222 | 225 | 99 | 3 | 21 | 196 | 98 | 322 | 7.04e-20 | 88.6 |
| Msa0778680 | MtrunA17_Chr2g0280141 | 46.667 | 90 | 44 | 1 | 108 | 193 | 384 | 473 | 1.36e-11 | 64.3 |
| Msa0778680 | MtrunA17_Chr2g0325201 | 37.321 | 209 | 69 | 4 | 44 | 190 | 2 | 210 | 3.31e-20 | 86.3 |
| Msa0778680 | MtrunA17_Chr2g0332951 | 66.667 | 63 | 18 | 1 | 194 | 253 | 132 | 194 | 4.64e-20 | 85.5 |
| Msa0778680 | MtrunA17_Chr2g0325801 | 78.182 | 55 | 12 | 0 | 1 | 55 | 70 | 124 | 6.39e-20 | 82.8 |
| Msa0778680 | MtrunA17_Chr3g0140581 | 43.519 | 108 | 61 | 0 | 1 | 108 | 4 | 111 | 3.35e-18 | 79.0 |
| Msa0778680 | MtrunA17_Chr2g0325791 | 48.544 | 103 | 33 | 1 | 88 | 190 | 22 | 104 | 8.51e-15 | 72.8 |
| Msa0778680 | MtrunA17_Chr2g0332961 | 73.913 | 46 | 12 | 0 | 194 | 239 | 308 | 353 | 1.34e-14 | 72.4 |
| Msa0778680 | MtrunA17_Chr3g0140591 | 54.795 | 73 | 33 | 0 | 181 | 253 | 84 | 156 | 6.08e-14 | 68.2 |
| Msa0778680 | MtrunA17_Chr2g0325331 | 60.274 | 73 | 29 | 0 | 181 | 253 | 77 | 149 | 7.52e-14 | 67.8 |
| Msa0778680 | MtrunA17_Chr2g0325611 | 66.667 | 60 | 20 | 0 | 194 | 253 | 415 | 474 | 7.98e-14 | 70.9 |
| Msa0778680 | MtrunA17_Chr2g0325641 | 41.667 | 168 | 75 | 5 | 26 | 191 | 4 | 150 | 4.39e-13 | 67.8 |
| Msa0778680 | MtrunA17_Chr4g0044221 | 33.889 | 180 | 97 | 4 | 21 | 178 | 14 | 193 | 6.46e-13 | 67.4 |
| Msa0778680 | MtrunA17_Chr2g0325291 | 51.351 | 74 | 36 | 0 | 180 | 253 | 62 | 135 | 5.89e-12 | 63.5 |
| Msa0778680 | MtrunA17_Chr2g0325771 | 73.333 | 60 | 16 | 0 | 194 | 253 | 100 | 159 | 9.82e-12 | 62.0 |
| Msa0778680 | MtrunA17_Chr5g0434751 | 52.941 | 85 | 36 | 1 | 107 | 187 | 6 | 90 | 9.98e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCTCAATATCTCTATTTA+TGG | 0.179424 | 5_2:-59490597 | None:intergenic |
| GAAAATTCTTTGGCGGTTAT+TGG | 0.189416 | 5_2:+59491844 | Msa0778680:CDS |
| AGAAAATACTGAAAATTCTT+TGG | 0.279753 | 5_2:+59491834 | Msa0778680:CDS |
| CATTCACCAGCTCATTCATT+TGG | 0.321781 | 5_2:-59490856 | None:intergenic |
| AGAGCTTGAAAATAAGAAAA+AGG | 0.324967 | 5_2:+59490628 | Msa0778680:CDS |
| CTGATTCCAGCTTCTTCACT+TGG | 0.325742 | 5_2:-59491160 | None:intergenic |
| TCAGCACAAGATAGCTGTTT+AGG | 0.349900 | 5_2:+59491948 | Msa0778680:CDS |
| GAATTTCACACATGATTTGA+AGG | 0.404597 | 5_2:+59491801 | Msa0778680:CDS |
| GGAAGGGCAGCTCTATTTGA+TGG | 0.408419 | 5_2:+59490736 | Msa0778680:CDS |
| CAAATAGAGCTGCCCTTCCT+TGG | 0.436942 | 5_2:-59490732 | None:intergenic |
| TATTTGATGGAGGACATGAT+TGG | 0.450616 | 5_2:+59490749 | Msa0778680:CDS |
| CGAATTTCGCAAGCAAGTGC+AGG | 0.456238 | 5_2:+59490676 | Msa0778680:CDS |
| ATTTGAAGAAAACTCATTTG+AGG | 0.467594 | 5_2:+59490532 | Msa0778680:CDS |
| AAATACTGAAAATTCTTTGG+CGG | 0.480429 | 5_2:+59491837 | Msa0778680:CDS |
| GCAATTGAAAGTACAAGTTA+AGG | 0.485918 | 5_2:+59491064 | Msa0778680:CDS |
| TAGATTCTAGCCCCTTCACT+TGG | 0.486712 | 5_2:-59490992 | None:intergenic |
| GTGATTTGAGATCCTCCACT+TGG | 0.490619 | 5_2:-59491034 | None:intergenic |
| GTCCATAAATAGAGATATTG+AGG | 0.493883 | 5_2:+59490595 | Msa0778680:CDS |
| GTTGGAACTTCGTGAAATCA+TGG | 0.496038 | 5_2:+59490802 | Msa0778680:CDS |
| GAAGCTGGAATCAGAAAAGA+AGG | 0.501898 | 5_2:+59491169 | Msa0778680:CDS |
| CAAAGTGATGGCCGAGTGAA+GGG | 0.515145 | 5_2:+59491107 | Msa0778680:CDS |
| GGATAACATTTCAAAACAGA+TGG | 0.516535 | 5_2:+59490823 | Msa0778680:CDS |
| ACTCATTTGAGGAATGCAAA+AGG | 0.530697 | 5_2:+59490543 | Msa0778680:CDS |
| GCAAAGTGATGGCCGAGTGA+AGG | 0.531976 | 5_2:+59491106 | Msa0778680:CDS |
| TTGATTCAAACCCCTTCACT+CGG | 0.535904 | 5_2:-59491118 | None:intergenic |
| GAATTTCGCAAGCAAGTGCA+GGG | 0.544607 | 5_2:+59490677 | Msa0778680:CDS |
| TGAAGTCCAAGTGAAGAAGC+TGG | 0.555933 | 5_2:+59491154 | Msa0778680:CDS |
| AGATCTCCAGACAAAAGAGT+TGG | 0.557429 | 5_2:+59490784 | Msa0778680:CDS |
| GAAGGGGTTTGAATCAAAGA+AGG | 0.569459 | 5_2:+59491124 | Msa0778680:CDS |
| GGAATTTAAAAGCCAAGTGA+AGG | 0.571794 | 5_2:+59490980 | Msa0778680:CDS |
| GAAAATTGAAGAATGTGTCA+AGG | 0.594705 | 5_2:+59490700 | Msa0778680:CDS |
| GAATTTAAAAGCCAAGTGAA+GGG | 0.596980 | 5_2:+59490981 | Msa0778680:CDS |
| TGAAAGCCAAATGAATGAGC+TGG | 0.600780 | 5_2:+59490850 | Msa0778680:CDS |
| AATTTAAAAGCCAAGTGAAG+GGG | 0.617758 | 5_2:+59490982 | Msa0778680:CDS |
| TCTAAAGAGAAGCAAAGTGA+TGG | 0.633979 | 5_2:+59491095 | Msa0778680:CDS |
| AGGATCTCAAATCACAAGAG+TGG | 0.656491 | 5_2:+59491042 | Msa0778680:CDS |
| AAAGTGATGGCCGAGTGAAG+GGG | 0.671538 | 5_2:+59491108 | Msa0778680:CDS |
| AGGGCAGCTCTATTTGATGG+AGG | 0.680424 | 5_2:+59490739 | Msa0778680:CDS |
| AATTTCGCAAGCAAGTGCAG+GGG | 0.713058 | 5_2:+59490678 | Msa0778680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATCAAAATATTTTATCAA+TGG | - | chr5_2:59491489-59491508 | None:intergenic | 10.0% |
| !!! | ATTGATAAAATATTTTGATT+AGG | + | chr5_2:59491488-59491507 | Msa0778680:intron | 10.0% |
| !!! | TAATCAAAATATTTTATCAA+TGG | - | chr5_2:59491489-59491508 | None:intergenic | 10.0% |
| !!! | ATTGATAAAATATTTTGATT+AGG | + | chr5_2:59491488-59491507 | Msa0778680:intron | 10.0% |
| !! | TCAAATCTAAATAAACATGA+TGG | + | chr5_2:59491423-59491442 | Msa0778680:intron | 20.0% |
| !! | AGAAAATACTGAAAATTCTT+TGG | + | chr5_2:59491834-59491853 | Msa0778680:CDS | 20.0% |
| !! | TCAAATCTAAATAAACATGA+TGG | + | chr5_2:59491423-59491442 | Msa0778680:intron | 20.0% |
| !! | AGAAAATACTGAAAATTCTT+TGG | + | chr5_2:59491834-59491853 | Msa0778680:CDS | 20.0% |
| ! | ATTTGAAGAAAACTCATTTG+AGG | + | chr5_2:59490532-59490551 | Msa0778680:CDS | 25.0% |
| ! | AGAGCTTGAAAATAAGAAAA+AGG | + | chr5_2:59490628-59490647 | Msa0778680:CDS | 25.0% |
| ! | AAAAAGGAAATTAGTTGTGT+TGG | + | chr5_2:59490644-59490663 | Msa0778680:CDS | 25.0% |
| ! | TCGAATCAAAAGAAATTTGA+TGG | + | chr5_2:59491216-59491235 | Msa0778680:intron | 25.0% |
| ! | TTAAAAGAGAATCAGATTGA+AGG | + | chr5_2:59491381-59491400 | Msa0778680:intron | 25.0% |
| ! | TGTTTATTTAGATTTGACTC+TGG | - | chr5_2:59491420-59491439 | None:intergenic | 25.0% |
| ! | TTTGATTAGGAAATAGAATC+AGG | + | chr5_2:59491501-59491520 | Msa0778680:intron | 25.0% |
| ! | AAATACTGAAAATTCTTTGG+CGG | + | chr5_2:59491837-59491856 | Msa0778680:CDS | 25.0% |
| ! | ATTTGAAGAAAACTCATTTG+AGG | + | chr5_2:59490532-59490551 | Msa0778680:CDS | 25.0% |
| ! | AGAGCTTGAAAATAAGAAAA+AGG | + | chr5_2:59490628-59490647 | Msa0778680:CDS | 25.0% |
| ! | AAAAAGGAAATTAGTTGTGT+TGG | + | chr5_2:59490644-59490663 | Msa0778680:CDS | 25.0% |
| ! | TCGAATCAAAAGAAATTTGA+TGG | + | chr5_2:59491216-59491235 | Msa0778680:intron | 25.0% |
| ! | TTAAAAGAGAATCAGATTGA+AGG | + | chr5_2:59491381-59491400 | Msa0778680:intron | 25.0% |
| ! | TGTTTATTTAGATTTGACTC+TGG | - | chr5_2:59491420-59491439 | None:intergenic | 25.0% |
| ! | TTTGATTAGGAAATAGAATC+AGG | + | chr5_2:59491501-59491520 | Msa0778680:intron | 25.0% |
| ! | AAATACTGAAAATTCTTTGG+CGG | + | chr5_2:59491837-59491856 | Msa0778680:CDS | 25.0% |
| AAAAAGCTAGTAGAAGAGAA+GGG | + | chr5_2:59490566-59490585 | Msa0778680:CDS | 30.0% | |
| GTCCATAAATAGAGATATTG+AGG | + | chr5_2:59490595-59490614 | Msa0778680:CDS | 30.0% | |
| CTCCTCAATATCTCTATTTA+TGG | - | chr5_2:59490600-59490619 | None:intergenic | 30.0% | |
| GAAAATTGAAGAATGTGTCA+AGG | + | chr5_2:59490700-59490719 | Msa0778680:CDS | 30.0% | |
| GGATAACATTTCAAAACAGA+TGG | + | chr5_2:59490823-59490842 | Msa0778680:CDS | 30.0% | |
| !!! | AAACAGAAGCATTTTGAAAG+CGG | + | chr5_2:59490890-59490909 | Msa0778680:intron | 30.0% |
| GAATTTAAAAGCCAAGTGAA+GGG | + | chr5_2:59490981-59491000 | Msa0778680:CDS | 30.0% | |
| AATTTAAAAGCCAAGTGAAG+GGG | + | chr5_2:59490982-59491001 | Msa0778680:CDS | 30.0% | |
| ! | GCAATTGAAAGTACAAGTTA+AGG | + | chr5_2:59491064-59491083 | Msa0778680:CDS | 30.0% |
| ! | AGTGAAGGAGTTTAAAACAT+AGG | + | chr5_2:59491242-59491261 | Msa0778680:intron | 30.0% |
| AAAACATAGGAGGAATTCAA+AGG | + | chr5_2:59491255-59491274 | Msa0778680:intron | 30.0% | |
| TTTATTTAAGCTCCATAACC+CGG | - | chr5_2:59491281-59491300 | None:intergenic | 30.0% | |
| ! | AAAGAAGCAATTTGAAATCC+AGG | + | chr5_2:59491302-59491321 | Msa0778680:intron | 30.0% |
| TTAATCATTCGGTTATCACA+AGG | - | chr5_2:59491757-59491776 | None:intergenic | 30.0% | |
| CTACACAAGGTTTAATCATT+CGG | - | chr5_2:59491768-59491787 | None:intergenic | 30.0% | |
| GAATTTCACACATGATTTGA+AGG | + | chr5_2:59491801-59491820 | Msa0778680:CDS | 30.0% | |
| !!! | CTACTGGTTTTGTCAATTTA+TGG | + | chr5_2:59491871-59491890 | Msa0778680:CDS | 30.0% |
| AAAAAGCTAGTAGAAGAGAA+GGG | + | chr5_2:59490566-59490585 | Msa0778680:CDS | 30.0% | |
| GTCCATAAATAGAGATATTG+AGG | + | chr5_2:59490595-59490614 | Msa0778680:CDS | 30.0% | |
| CTCCTCAATATCTCTATTTA+TGG | - | chr5_2:59490600-59490619 | None:intergenic | 30.0% | |
| GAAAATTGAAGAATGTGTCA+AGG | + | chr5_2:59490700-59490719 | Msa0778680:CDS | 30.0% | |
| GGATAACATTTCAAAACAGA+TGG | + | chr5_2:59490823-59490842 | Msa0778680:CDS | 30.0% | |
| !!! | AAACAGAAGCATTTTGAAAG+CGG | + | chr5_2:59490890-59490909 | Msa0778680:intron | 30.0% |
| GAATTTAAAAGCCAAGTGAA+GGG | + | chr5_2:59490981-59491000 | Msa0778680:CDS | 30.0% | |
| AATTTAAAAGCCAAGTGAAG+GGG | + | chr5_2:59490982-59491001 | Msa0778680:CDS | 30.0% | |
| ! | GCAATTGAAAGTACAAGTTA+AGG | + | chr5_2:59491064-59491083 | Msa0778680:CDS | 30.0% |
| ! | AGTGAAGGAGTTTAAAACAT+AGG | + | chr5_2:59491242-59491261 | Msa0778680:intron | 30.0% |
| AAAACATAGGAGGAATTCAA+AGG | + | chr5_2:59491255-59491274 | Msa0778680:intron | 30.0% | |
| TTTATTTAAGCTCCATAACC+CGG | - | chr5_2:59491281-59491300 | None:intergenic | 30.0% | |
| ! | AAAGAAGCAATTTGAAATCC+AGG | + | chr5_2:59491302-59491321 | Msa0778680:intron | 30.0% |
| TTAATCATTCGGTTATCACA+AGG | - | chr5_2:59491757-59491776 | None:intergenic | 30.0% | |
| CTACACAAGGTTTAATCATT+CGG | - | chr5_2:59491768-59491787 | None:intergenic | 30.0% | |
| GAATTTCACACATGATTTGA+AGG | + | chr5_2:59491801-59491820 | Msa0778680:CDS | 30.0% | |
| !!! | CTACTGGTTTTGTCAATTTA+TGG | + | chr5_2:59491871-59491890 | Msa0778680:CDS | 30.0% |
| ACTCATTTGAGGAATGCAAA+AGG | + | chr5_2:59490543-59490562 | Msa0778680:CDS | 35.0% | |
| GAAAAAGCTAGTAGAAGAGA+AGG | + | chr5_2:59490565-59490584 | Msa0778680:CDS | 35.0% | |
| TATTTGATGGAGGACATGAT+TGG | + | chr5_2:59490749-59490768 | Msa0778680:CDS | 35.0% | |
| !!! | AGCATTTTGAAAGCGGATTA+AGG | + | chr5_2:59490897-59490916 | Msa0778680:intron | 35.0% |
| GGAATTTAAAAGCCAAGTGA+AGG | + | chr5_2:59490980-59490999 | Msa0778680:CDS | 35.0% | |
| TCTAAAGAGAAGCAAAGTGA+TGG | + | chr5_2:59491095-59491114 | Msa0778680:CDS | 35.0% | |
| ! | GAAATTTGATGGACAAGTGA+AGG | + | chr5_2:59491227-59491246 | Msa0778680:intron | 35.0% |
| ! | GAAGGAGTTTAAAACATAGG+AGG | + | chr5_2:59491245-59491264 | Msa0778680:intron | 35.0% |
| TTGACTTTAAATCCTCAACC+TGG | - | chr5_2:59491323-59491342 | None:intergenic | 35.0% | |
| AGAAGTAACTTGAAGAACGA+TGG | + | chr5_2:59491346-59491365 | Msa0778680:intron | 35.0% | |
| !! | TAAACATGATGGACAACCAA+AGG | + | chr5_2:59491434-59491453 | Msa0778680:intron | 35.0% |
| TAACCTGATCTGCATATATG+AGG | + | chr5_2:59491594-59491613 | Msa0778680:intron | 35.0% | |
| AACCTGATCTGCATATATGA+GGG | + | chr5_2:59491595-59491614 | Msa0778680:intron | 35.0% | |
| CTGAAAACTTCTTCCATCAA+TGG | - | chr5_2:59491684-59491703 | None:intergenic | 35.0% | |
| CGAATGATTAAACCTTGTGT+AGG | + | chr5_2:59491766-59491785 | Msa0778680:intron | 35.0% | |
| GAAAATTCTTTGGCGGTTAT+TGG | + | chr5_2:59491844-59491863 | Msa0778680:CDS | 35.0% | |
| ACTCATTTGAGGAATGCAAA+AGG | + | chr5_2:59490543-59490562 | Msa0778680:CDS | 35.0% | |
| GAAAAAGCTAGTAGAAGAGA+AGG | + | chr5_2:59490565-59490584 | Msa0778680:CDS | 35.0% | |
| TATTTGATGGAGGACATGAT+TGG | + | chr5_2:59490749-59490768 | Msa0778680:CDS | 35.0% | |
| !!! | AGCATTTTGAAAGCGGATTA+AGG | + | chr5_2:59490897-59490916 | Msa0778680:intron | 35.0% |
| GGAATTTAAAAGCCAAGTGA+AGG | + | chr5_2:59490980-59490999 | Msa0778680:CDS | 35.0% | |
| TCTAAAGAGAAGCAAAGTGA+TGG | + | chr5_2:59491095-59491114 | Msa0778680:CDS | 35.0% | |
| ! | GAAATTTGATGGACAAGTGA+AGG | + | chr5_2:59491227-59491246 | Msa0778680:intron | 35.0% |
| ! | GAAGGAGTTTAAAACATAGG+AGG | + | chr5_2:59491245-59491264 | Msa0778680:intron | 35.0% |
| TTGACTTTAAATCCTCAACC+TGG | - | chr5_2:59491323-59491342 | None:intergenic | 35.0% | |
| AGAAGTAACTTGAAGAACGA+TGG | + | chr5_2:59491346-59491365 | Msa0778680:intron | 35.0% | |
| !! | TAAACATGATGGACAACCAA+AGG | + | chr5_2:59491434-59491453 | Msa0778680:intron | 35.0% |
| TAACCTGATCTGCATATATG+AGG | + | chr5_2:59491594-59491613 | Msa0778680:intron | 35.0% | |
| AACCTGATCTGCATATATGA+GGG | + | chr5_2:59491595-59491614 | Msa0778680:intron | 35.0% | |
| CTGAAAACTTCTTCCATCAA+TGG | - | chr5_2:59491684-59491703 | None:intergenic | 35.0% | |
| CGAATGATTAAACCTTGTGT+AGG | + | chr5_2:59491766-59491785 | Msa0778680:intron | 35.0% | |
| GAAAATTCTTTGGCGGTTAT+TGG | + | chr5_2:59491844-59491863 | Msa0778680:CDS | 35.0% | |
| ! | TGTCAAGGATTTTGTAGCCA+AGG | + | chr5_2:59490715-59490734 | Msa0778680:CDS | 40.0% |
| ! | AAGGATTTTGTAGCCAAGGA+AGG | + | chr5_2:59490719-59490738 | Msa0778680:CDS | 40.0% |
| ! | AGGATTTTGTAGCCAAGGAA+GGG | + | chr5_2:59490720-59490739 | Msa0778680:CDS | 40.0% |
| AGATCTCCAGACAAAAGAGT+TGG | + | chr5_2:59490784-59490803 | Msa0778680:CDS | 40.0% | |
| ! | GAAGTTCCAACTCTTTTGTC+TGG | - | chr5_2:59490793-59490812 | None:intergenic | 40.0% |
| GTTGGAACTTCGTGAAATCA+TGG | + | chr5_2:59490802-59490821 | Msa0778680:CDS | 40.0% | |
| TGAAAGCCAAATGAATGAGC+TGG | + | chr5_2:59490850-59490869 | Msa0778680:CDS | 40.0% | |
| CATTCACCAGCTCATTCATT+TGG | - | chr5_2:59490859-59490878 | None:intergenic | 40.0% | |
| GAATGAGCTGGTGAATGATT+TGG | + | chr5_2:59490862-59490881 | Msa0778680:intron | 40.0% | |
| !!! | GAAGAGTTTTGAAAGCCAAG+TGG | + | chr5_2:59491019-59491038 | Msa0778680:CDS | 40.0% |
| AGGATCTCAAATCACAAGAG+TGG | + | chr5_2:59491042-59491061 | Msa0778680:CDS | 40.0% | |
| TTGATTCAAACCCCTTCACT+CGG | - | chr5_2:59491121-59491140 | None:intergenic | 40.0% | |
| GAAGGGGTTTGAATCAAAGA+AGG | + | chr5_2:59491124-59491143 | Msa0778680:CDS | 40.0% | |
| GAAGCTGGAATCAGAAAAGA+AGG | + | chr5_2:59491169-59491188 | Msa0778680:CDS | 40.0% | |
| ! | GCAATTTGAAATCCAGGTTG+AGG | + | chr5_2:59491308-59491327 | Msa0778680:intron | 40.0% |
| TCAGATTGAAGGAGAAGACA+AGG | + | chr5_2:59491392-59491411 | Msa0778680:intron | 40.0% | |
| !! | GAAGTTAGCTCTACCATTGA+TGG | + | chr5_2:59491668-59491687 | Msa0778680:intron | 40.0% |
| !! | GAATGTCGGTTTCATCACTT+GGG | - | chr5_2:59491712-59491731 | None:intergenic | 40.0% |
| !! | AGAATGTCGGTTTCATCACT+TGG | - | chr5_2:59491713-59491732 | None:intergenic | 40.0% |
| ! | TTGCAGATCGTCTAGAATGT+CGG | - | chr5_2:59491726-59491745 | None:intergenic | 40.0% |
| AATGCTTCTTCTCCTACACA+AGG | - | chr5_2:59491781-59491800 | None:intergenic | 40.0% | |
| ! | TGTCAAGGATTTTGTAGCCA+AGG | + | chr5_2:59490715-59490734 | Msa0778680:CDS | 40.0% |
| ! | AAGGATTTTGTAGCCAAGGA+AGG | + | chr5_2:59490719-59490738 | Msa0778680:CDS | 40.0% |
| ! | AGGATTTTGTAGCCAAGGAA+GGG | + | chr5_2:59490720-59490739 | Msa0778680:CDS | 40.0% |
| AGATCTCCAGACAAAAGAGT+TGG | + | chr5_2:59490784-59490803 | Msa0778680:CDS | 40.0% | |
| ! | GAAGTTCCAACTCTTTTGTC+TGG | - | chr5_2:59490793-59490812 | None:intergenic | 40.0% |
| GTTGGAACTTCGTGAAATCA+TGG | + | chr5_2:59490802-59490821 | Msa0778680:CDS | 40.0% | |
| TGAAAGCCAAATGAATGAGC+TGG | + | chr5_2:59490850-59490869 | Msa0778680:CDS | 40.0% | |
| CATTCACCAGCTCATTCATT+TGG | - | chr5_2:59490859-59490878 | None:intergenic | 40.0% | |
| GAATGAGCTGGTGAATGATT+TGG | + | chr5_2:59490862-59490881 | Msa0778680:intron | 40.0% | |
| !!! | GAAGAGTTTTGAAAGCCAAG+TGG | + | chr5_2:59491019-59491038 | Msa0778680:CDS | 40.0% |
| AGGATCTCAAATCACAAGAG+TGG | + | chr5_2:59491042-59491061 | Msa0778680:CDS | 40.0% | |
| TTGATTCAAACCCCTTCACT+CGG | - | chr5_2:59491121-59491140 | None:intergenic | 40.0% | |
| GAAGGGGTTTGAATCAAAGA+AGG | + | chr5_2:59491124-59491143 | Msa0778680:CDS | 40.0% | |
| GAAGCTGGAATCAGAAAAGA+AGG | + | chr5_2:59491169-59491188 | Msa0778680:CDS | 40.0% | |
| ! | GCAATTTGAAATCCAGGTTG+AGG | + | chr5_2:59491308-59491327 | Msa0778680:intron | 40.0% |
| TCAGATTGAAGGAGAAGACA+AGG | + | chr5_2:59491392-59491411 | Msa0778680:intron | 40.0% | |
| !! | GAAGTTAGCTCTACCATTGA+TGG | + | chr5_2:59491668-59491687 | Msa0778680:intron | 40.0% |
| !! | GAATGTCGGTTTCATCACTT+GGG | - | chr5_2:59491712-59491731 | None:intergenic | 40.0% |
| !! | AGAATGTCGGTTTCATCACT+TGG | - | chr5_2:59491713-59491732 | None:intergenic | 40.0% |
| ! | TTGCAGATCGTCTAGAATGT+CGG | - | chr5_2:59491726-59491745 | None:intergenic | 40.0% |
| AATGCTTCTTCTCCTACACA+AGG | - | chr5_2:59491781-59491800 | None:intergenic | 40.0% | |
| GAATTTCGCAAGCAAGTGCA+GGG | + | chr5_2:59490677-59490696 | Msa0778680:CDS | 45.0% | |
| AATTTCGCAAGCAAGTGCAG+GGG | + | chr5_2:59490678-59490697 | Msa0778680:CDS | 45.0% | |
| GTCAAAGAGAAGCAGCTTGA+TGG | + | chr5_2:59490927-59490946 | Msa0778680:intron | 45.0% | |
| ! | AGGAGCATGAATCAAAGCAG+AGG | + | chr5_2:59490958-59490977 | Msa0778680:intron | 45.0% |
| GGAGCATGAATCAAAGCAGA+GGG | + | chr5_2:59490959-59490978 | Msa0778680:intron | 45.0% | |
| TAGATTCTAGCCCCTTCACT+TGG | - | chr5_2:59490995-59491014 | None:intergenic | 45.0% | |
| !!! | GAGTTTTGAAAGCCAAGTGG+AGG | + | chr5_2:59491022-59491041 | Msa0778680:CDS | 45.0% |
| ! | GTGATTTGAGATCCTCCACT+TGG | - | chr5_2:59491037-59491056 | None:intergenic | 45.0% |
| TGAAGTCCAAGTGAAGAAGC+TGG | + | chr5_2:59491154-59491173 | Msa0778680:CDS | 45.0% | |
| CTGATTCCAGCTTCTTCACT+TGG | - | chr5_2:59491163-59491182 | None:intergenic | 45.0% | |
| !! | GGATTTTGAGAGTCGACTGA+AGG | + | chr5_2:59491190-59491209 | Msa0778680:intron | 45.0% |
| CATAGGAGGAATTCAAAGGC+CGG | + | chr5_2:59491259-59491278 | Msa0778680:intron | 45.0% | |
| ATAGGAGGAATTCAAAGGCC+GGG | + | chr5_2:59491260-59491279 | Msa0778680:intron | 45.0% | |
| TCTGTCAACTCATGCTCCTT+TGG | - | chr5_2:59491453-59491472 | None:intergenic | 45.0% | |
| CTCCCTCATATATGCAGATC+AGG | - | chr5_2:59491600-59491619 | None:intergenic | 45.0% | |
| !!! | GGCGGTTATTGGTTTTCTAC+TGG | + | chr5_2:59491855-59491874 | Msa0778680:CDS | 45.0% |
| GAATTTCGCAAGCAAGTGCA+GGG | + | chr5_2:59490677-59490696 | Msa0778680:CDS | 45.0% | |
| AATTTCGCAAGCAAGTGCAG+GGG | + | chr5_2:59490678-59490697 | Msa0778680:CDS | 45.0% | |
| GTCAAAGAGAAGCAGCTTGA+TGG | + | chr5_2:59490927-59490946 | Msa0778680:intron | 45.0% | |
| ! | AGGAGCATGAATCAAAGCAG+AGG | + | chr5_2:59490958-59490977 | Msa0778680:intron | 45.0% |
| GGAGCATGAATCAAAGCAGA+GGG | + | chr5_2:59490959-59490978 | Msa0778680:intron | 45.0% | |
| TAGATTCTAGCCCCTTCACT+TGG | - | chr5_2:59490995-59491014 | None:intergenic | 45.0% | |
| !!! | GAGTTTTGAAAGCCAAGTGG+AGG | + | chr5_2:59491022-59491041 | Msa0778680:CDS | 45.0% |
| ! | GTGATTTGAGATCCTCCACT+TGG | - | chr5_2:59491037-59491056 | None:intergenic | 45.0% |
| TGAAGTCCAAGTGAAGAAGC+TGG | + | chr5_2:59491154-59491173 | Msa0778680:CDS | 45.0% | |
| CTGATTCCAGCTTCTTCACT+TGG | - | chr5_2:59491163-59491182 | None:intergenic | 45.0% | |
| !! | GGATTTTGAGAGTCGACTGA+AGG | + | chr5_2:59491190-59491209 | Msa0778680:intron | 45.0% |
| CATAGGAGGAATTCAAAGGC+CGG | + | chr5_2:59491259-59491278 | Msa0778680:intron | 45.0% | |
| ATAGGAGGAATTCAAAGGCC+GGG | + | chr5_2:59491260-59491279 | Msa0778680:intron | 45.0% | |
| TCTGTCAACTCATGCTCCTT+TGG | - | chr5_2:59491453-59491472 | None:intergenic | 45.0% | |
| CTCCCTCATATATGCAGATC+AGG | - | chr5_2:59491600-59491619 | None:intergenic | 45.0% | |
| !!! | GGCGGTTATTGGTTTTCTAC+TGG | + | chr5_2:59491855-59491874 | Msa0778680:CDS | 45.0% |
| CGAATTTCGCAAGCAAGTGC+AGG | + | chr5_2:59490676-59490695 | Msa0778680:CDS | 50.0% | |
| CAAATAGAGCTGCCCTTCCT+TGG | - | chr5_2:59490735-59490754 | None:intergenic | 50.0% | |
| GGAAGGGCAGCTCTATTTGA+TGG | + | chr5_2:59490736-59490755 | Msa0778680:CDS | 50.0% | |
| AGGGCAGCTCTATTTGATGG+AGG | + | chr5_2:59490739-59490758 | Msa0778680:CDS | 50.0% | |
| CAAAGTGATGGCCGAGTGAA+GGG | + | chr5_2:59491107-59491126 | Msa0778680:CDS | 50.0% | |
| AAAGTGATGGCCGAGTGAAG+GGG | + | chr5_2:59491108-59491127 | Msa0778680:CDS | 50.0% | |
| GGAATTCAAAGGCCGGGTTA+TGG | + | chr5_2:59491266-59491285 | Msa0778680:intron | 50.0% | |
| CGAATTTCGCAAGCAAGTGC+AGG | + | chr5_2:59490676-59490695 | Msa0778680:CDS | 50.0% | |
| CAAATAGAGCTGCCCTTCCT+TGG | - | chr5_2:59490735-59490754 | None:intergenic | 50.0% | |
| GGAAGGGCAGCTCTATTTGA+TGG | + | chr5_2:59490736-59490755 | Msa0778680:CDS | 50.0% | |
| AGGGCAGCTCTATTTGATGG+AGG | + | chr5_2:59490739-59490758 | Msa0778680:CDS | 50.0% | |
| CAAAGTGATGGCCGAGTGAA+GGG | + | chr5_2:59491107-59491126 | Msa0778680:CDS | 50.0% | |
| AAAGTGATGGCCGAGTGAAG+GGG | + | chr5_2:59491108-59491127 | Msa0778680:CDS | 50.0% | |
| GGAATTCAAAGGCCGGGTTA+TGG | + | chr5_2:59491266-59491285 | Msa0778680:intron | 50.0% | |
| ! | GAAGCAGCTTGATGGTCGAG+TGG | + | chr5_2:59490935-59490954 | Msa0778680:intron | 55.0% |
| GCAAAGTGATGGCCGAGTGA+AGG | + | chr5_2:59491106-59491125 | Msa0778680:CDS | 55.0% | |
| ! | GAAGCAGCTTGATGGTCGAG+TGG | + | chr5_2:59490935-59490954 | Msa0778680:intron | 55.0% |
| GCAAAGTGATGGCCGAGTGA+AGG | + | chr5_2:59491106-59491125 | Msa0778680:CDS | 55.0% | |
| ! | GCAGCTTGATGGTCGAGTGG+AGG | + | chr5_2:59490938-59490957 | Msa0778680:intron | 60.0% |
| ! | GCAGCTTGATGGTCGAGTGG+AGG | + | chr5_2:59490938-59490957 | Msa0778680:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 59490515 | 59491969 | 59490515 | ID=Msa0778680;Name=Msa0778680 |
| chr5_2 | mRNA | 59490515 | 59491969 | 59490515 | ID=Msa0778680-mRNA-1;Parent=Msa0778680;Name=Msa0778680-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|1|1|1|3|0|253 |
| chr5_2 | exon | 59490515 | 59490871 | 59490515 | ID=Msa0778680-mRNA-1:exon:17474;Parent=Msa0778680-mRNA-1 |
| chr5_2 | exon | 59490978 | 59491200 | 59490978 | ID=Msa0778680-mRNA-1:exon:17475;Parent=Msa0778680-mRNA-1 |
| chr5_2 | exon | 59491788 | 59491969 | 59491788 | ID=Msa0778680-mRNA-1:exon:17476;Parent=Msa0778680-mRNA-1 |
| chr5_2 | CDS | 59490515 | 59490871 | 59490515 | ID=Msa0778680-mRNA-1:cds;Parent=Msa0778680-mRNA-1 |
| chr5_2 | CDS | 59490978 | 59491200 | 59490978 | ID=Msa0778680-mRNA-1:cds;Parent=Msa0778680-mRNA-1 |
| chr5_2 | CDS | 59491788 | 59491969 | 59491788 | ID=Msa0778680-mRNA-1:cds;Parent=Msa0778680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
