Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0778690 | RHN75806.1 | 76.712 | 146 | 27 | 1 | 135 | 280 | 183 | 321 | 1.16e-57 | 202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0778690 | A0A396JC05 | 76.712 | 146 | 27 | 1 | 135 | 280 | 183 | 321 | 5.55e-58 | 202 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0657970 | Msa0778690 | 0.803768 | 2.978177e-49 | -8.615850e-47 |
| Msa0737080 | Msa0778690 | 0.840341 | 9.219415e-58 | -8.615850e-47 |
| Msa0737090 | Msa0778690 | 0.871479 | 6.621488e-67 | -8.615850e-47 |
| Msa0778670 | Msa0778690 | 0.815551 | 8.725768e-52 | -8.615850e-47 |
| Msa0778680 | Msa0778690 | 0.866520 | 2.685265e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0778690 | MtrunA17_Chr2g0325241 | 76.712 | 146 | 27 | 1 | 135 | 280 | 183 | 321 | 1.07e-61 | 202 |
| Msa0778690 | MtrunA17_Chr6g0471251 | 62.346 | 162 | 28 | 1 | 1 | 129 | 503 | 664 | 2.27e-53 | 186 |
| Msa0778690 | MtrunA17_Chr6g0471251 | 37.059 | 170 | 89 | 2 | 136 | 287 | 308 | 477 | 7.03e-13 | 69.3 |
| Msa0778690 | MtrunA17_Chr2g0325661 | 66.049 | 162 | 22 | 1 | 1 | 129 | 612 | 773 | 4.60e-47 | 169 |
| Msa0778690 | MtrunA17_Chr2g0325661 | 39.773 | 176 | 81 | 3 | 137 | 287 | 397 | 572 | 7.24e-14 | 72.4 |
| Msa0778690 | MtrunA17_Chr2g0325661 | 36.196 | 163 | 86 | 2 | 137 | 281 | 313 | 475 | 2.47e-11 | 64.7 |
| Msa0778690 | MtrunA17_Chr2g0325661 | 36.735 | 147 | 83 | 2 | 137 | 283 | 271 | 407 | 7.04e-11 | 63.2 |
| Msa0778690 | MtrunA17_Chr2g0325711 | 51.613 | 186 | 59 | 3 | 135 | 289 | 349 | 534 | 7.13e-41 | 151 |
| Msa0778690 | MtrunA17_Chr2g0325711 | 43.125 | 160 | 58 | 2 | 3 | 129 | 575 | 734 | 1.17e-25 | 107 |
| Msa0778690 | MtrunA17_Chr2g0325811 | 54.878 | 164 | 60 | 1 | 137 | 286 | 381 | 544 | 3.03e-40 | 150 |
| Msa0778690 | MtrunA17_Chr2g0325811 | 46.296 | 162 | 53 | 3 | 1 | 128 | 575 | 736 | 2.60e-31 | 124 |
| Msa0778690 | MtrunA17_Chr5g0434761 | 52.469 | 162 | 44 | 1 | 1 | 129 | 1 | 162 | 4.14e-37 | 133 |
| Msa0778690 | MtrunA17_Chr2g0325221 | 46.759 | 216 | 82 | 3 | 99 | 286 | 352 | 562 | 1.24e-36 | 139 |
| Msa0778690 | MtrunA17_Chr2g0325351 | 56.442 | 163 | 38 | 1 | 1 | 130 | 424 | 586 | 1.25e-36 | 139 |
| Msa0778690 | MtrunA17_Chr2g0325351 | 45.399 | 163 | 74 | 2 | 140 | 287 | 230 | 392 | 9.92e-21 | 92.8 |
| Msa0778690 | MtrunA17_Chr2g0325621 | 53.704 | 162 | 36 | 2 | 1 | 129 | 403 | 558 | 1.19e-34 | 133 |
| Msa0778690 | MtrunA17_Chr2g0325621 | 42.384 | 151 | 77 | 2 | 137 | 287 | 223 | 363 | 4.30e-15 | 75.9 |
| Msa0778690 | MtrunA17_Chr2g0325621 | 39.844 | 128 | 67 | 2 | 138 | 258 | 266 | 390 | 1.44e-14 | 74.3 |
| Msa0778690 | MtrunA17_Chr2g0325621 | 36.054 | 147 | 84 | 1 | 137 | 283 | 251 | 387 | 7.71e-11 | 63.2 |
| Msa0778690 | MtrunA17_Chr2g0280141 | 48.447 | 161 | 50 | 2 | 2 | 129 | 555 | 715 | 1.62e-33 | 130 |
| Msa0778690 | MtrunA17_Chr2g0280141 | 44.444 | 126 | 67 | 1 | 137 | 262 | 338 | 460 | 2.07e-16 | 80.1 |
| Msa0778690 | MtrunA17_Chr2g0280141 | 40.268 | 149 | 85 | 2 | 138 | 286 | 353 | 497 | 1.41e-15 | 77.4 |
| Msa0778690 | MtrunA17_Chr2g0280141 | 35.071 | 211 | 101 | 3 | 112 | 286 | 225 | 435 | 4.96e-15 | 75.9 |
| Msa0778690 | MtrunA17_Chr2g0280141 | 38.312 | 154 | 91 | 1 | 137 | 286 | 310 | 463 | 3.50e-14 | 73.2 |
| Msa0778690 | MtrunA17_Chr5g0416271 | 45.509 | 167 | 44 | 2 | 1 | 134 | 335 | 487 | 4.65e-33 | 127 |
| Msa0778690 | MtrunA17_Chr5g0416271 | 39.098 | 133 | 57 | 2 | 143 | 261 | 195 | 317 | 3.87e-15 | 75.9 |
| Msa0778690 | MtrunA17_Chr5g0416271 | 33.113 | 151 | 97 | 1 | 138 | 284 | 176 | 326 | 1.88e-11 | 64.7 |
| Msa0778690 | MtrunA17_Chr2g0325231 | 49.689 | 161 | 39 | 3 | 2 | 129 | 718 | 869 | 1.48e-32 | 127 |
| Msa0778690 | MtrunA17_Chr2g0325231 | 43.575 | 179 | 73 | 2 | 137 | 287 | 513 | 691 | 2.80e-24 | 103 |
| Msa0778690 | MtrunA17_Chr2g0325231 | 40.936 | 171 | 94 | 2 | 124 | 287 | 455 | 625 | 1.42e-21 | 95.5 |
| Msa0778690 | MtrunA17_Chr2g0325231 | 37.853 | 177 | 92 | 2 | 129 | 287 | 228 | 404 | 5.16e-18 | 84.7 |
| Msa0778690 | MtrunA17_Chr2g0325231 | 32.883 | 222 | 78 | 2 | 137 | 287 | 334 | 555 | 5.76e-15 | 75.9 |
| Msa0778690 | MtrunA17_Chr2g0325231 | 38.272 | 162 | 89 | 3 | 137 | 287 | 278 | 439 | 7.73e-15 | 75.5 |
| Msa0778690 | MtrunA17_Chr2g0325611 | 53.086 | 162 | 43 | 1 | 1 | 129 | 326 | 487 | 1.55e-32 | 127 |
| Msa0778690 | MtrunA17_Chr2g0325611 | 45.033 | 151 | 70 | 3 | 140 | 286 | 144 | 285 | 3.35e-18 | 85.1 |
| Msa0778690 | MtrunA17_Chr2g0325611 | 44.118 | 136 | 66 | 2 | 134 | 262 | 178 | 310 | 9.74e-18 | 84.0 |
| Msa0778690 | MtrunA17_Chr2g0333341 | 52.795 | 161 | 35 | 2 | 1 | 128 | 455 | 607 | 1.42e-31 | 124 |
| Msa0778690 | MtrunA17_Chr2g0333341 | 34.177 | 158 | 89 | 4 | 130 | 287 | 303 | 445 | 1.61e-11 | 65.1 |
| Msa0778690 | MtrunA17_Chr2g0333341 | 40.000 | 110 | 63 | 2 | 138 | 245 | 349 | 457 | 4.72e-11 | 63.5 |
| Msa0778690 | MtrunA17_Chr2g0325631 | 54.938 | 162 | 40 | 1 | 1 | 129 | 1 | 162 | 6.12e-31 | 117 |
| Msa0778690 | MtrunA17_Chr2g0325321 | 53.614 | 166 | 44 | 2 | 1 | 133 | 597 | 762 | 4.92e-29 | 117 |
| Msa0778690 | MtrunA17_Chr2g0325321 | 46.104 | 154 | 79 | 1 | 138 | 287 | 425 | 578 | 3.88e-22 | 97.1 |
| Msa0778690 | MtrunA17_Chr2g0325321 | 32.323 | 198 | 88 | 2 | 137 | 288 | 312 | 509 | 2.89e-13 | 70.5 |
| Msa0778690 | MtrunA17_Chr2g0325321 | 35.714 | 168 | 99 | 3 | 99 | 262 | 433 | 595 | 3.50e-13 | 70.1 |
| Msa0778690 | MtrunA17_Chr2g0325331 | 51.974 | 152 | 40 | 1 | 1 | 119 | 1 | 152 | 1.55e-28 | 108 |
| Msa0778690 | MtrunA17_Chr2g0325701 | 50.307 | 163 | 47 | 3 | 1 | 130 | 429 | 590 | 6.36e-27 | 110 |
| Msa0778690 | MtrunA17_Chr2g0325701 | 46.104 | 154 | 73 | 1 | 134 | 287 | 246 | 389 | 5.16e-24 | 102 |
| Msa0778690 | MtrunA17_Chr2g0325701 | 37.143 | 140 | 81 | 2 | 138 | 270 | 292 | 431 | 2.57e-13 | 70.5 |
| Msa0778690 | MtrunA17_Chr2g0325861 | 42.857 | 161 | 51 | 2 | 2 | 129 | 667 | 819 | 6.55e-27 | 111 |
| Msa0778690 | MtrunA17_Chr2g0325861 | 45.638 | 149 | 71 | 1 | 138 | 286 | 452 | 590 | 1.14e-20 | 92.8 |
| Msa0778690 | MtrunA17_Chr2g0325861 | 39.474 | 152 | 90 | 1 | 137 | 286 | 507 | 658 | 1.00e-17 | 84.0 |
| Msa0778690 | MtrunA17_Chr2g0325861 | 38.235 | 170 | 83 | 3 | 136 | 286 | 478 | 644 | 1.59e-15 | 77.4 |
| Msa0778690 | MtrunA17_Chr2g0325861 | 41.221 | 131 | 59 | 3 | 133 | 251 | 545 | 669 | 6.77e-12 | 66.2 |
| Msa0778690 | MtrunA17_Chr2g0332951 | 42.353 | 170 | 47 | 4 | 1 | 133 | 56 | 211 | 6.61e-27 | 105 |
| Msa0778690 | MtrunA17_Chr2g0325771 | 51.786 | 168 | 38 | 3 | 1 | 133 | 17 | 176 | 1.26e-26 | 103 |
| Msa0778690 | MtrunA17_Chr2g0325361 | 51.553 | 161 | 46 | 1 | 1 | 129 | 814 | 974 | 1.42e-26 | 110 |
| Msa0778690 | MtrunA17_Chr2g0325361 | 39.891 | 183 | 78 | 2 | 137 | 287 | 480 | 662 | 3.64e-24 | 103 |
| Msa0778690 | MtrunA17_Chr2g0325361 | 44.604 | 139 | 73 | 1 | 135 | 269 | 576 | 714 | 2.95e-23 | 100 |
| Msa0778690 | MtrunA17_Chr2g0325361 | 40.782 | 179 | 80 | 2 | 137 | 290 | 620 | 797 | 2.95e-22 | 97.4 |
| Msa0778690 | MtrunA17_Chr2g0325361 | 35.349 | 215 | 75 | 5 | 137 | 287 | 322 | 536 | 1.25e-18 | 86.7 |
| Msa0778690 | MtrunA17_Chr2g0325361 | 40.764 | 157 | 88 | 2 | 135 | 287 | 451 | 606 | 1.59e-18 | 86.7 |
| Msa0778690 | MtrunA17_Chr2g0325361 | 36.970 | 165 | 91 | 2 | 124 | 285 | 250 | 404 | 5.97e-17 | 81.6 |
| Msa0778690 | MtrunA17_Chr2g0325361 | 36.709 | 158 | 92 | 2 | 137 | 286 | 406 | 563 | 4.23e-14 | 73.2 |
| Msa0778690 | MtrunA17_Chr3g0140591 | 46.296 | 162 | 55 | 1 | 2 | 131 | 10 | 171 | 1.53e-26 | 103 |
| Msa0778690 | MtrunA17_Chr2g0325691 | 42.012 | 169 | 79 | 2 | 137 | 287 | 322 | 489 | 1.55e-22 | 98.2 |
| Msa0778690 | MtrunA17_Chr2g0325691 | 43.094 | 181 | 89 | 3 | 124 | 301 | 532 | 701 | 4.27e-19 | 87.8 |
| Msa0778690 | MtrunA17_Chr2g0325691 | 41.772 | 158 | 74 | 2 | 148 | 287 | 277 | 434 | 2.45e-18 | 85.9 |
| Msa0778690 | MtrunA17_Chr2g0325691 | 38.418 | 177 | 91 | 2 | 129 | 287 | 230 | 406 | 3.86e-17 | 82.0 |
| Msa0778690 | MtrunA17_Chr2g0325281 | 41.827 | 208 | 102 | 6 | 99 | 304 | 405 | 595 | 4.25e-21 | 94.0 |
| Msa0778690 | MtrunA17_Chr2g0325281 | 36.813 | 182 | 94 | 3 | 126 | 286 | 242 | 423 | 1.92e-16 | 80.1 |
| Msa0778690 | MtrunA17_Chr2g0325281 | 36.129 | 155 | 95 | 1 | 138 | 288 | 355 | 509 | 1.63e-13 | 71.2 |
| Msa0778690 | MtrunA17_Chr7g0235901 | 41.618 | 173 | 83 | 2 | 129 | 283 | 139 | 311 | 1.06e-20 | 90.5 |
| Msa0778690 | MtrunA17_Chr2g0325211 | 41.212 | 165 | 55 | 2 | 137 | 287 | 9 | 145 | 5.60e-19 | 83.2 |
| Msa0778690 | MtrunA17_Chr2g0325651 | 39.744 | 156 | 86 | 2 | 130 | 285 | 222 | 369 | 4.20e-18 | 84.0 |
| Msa0778690 | MtrunA17_Chr2g0325651 | 39.130 | 161 | 89 | 3 | 126 | 283 | 224 | 378 | 2.74e-15 | 75.9 |
| Msa0778690 | MtrunA17_Chr2g0325761 | 41.477 | 176 | 78 | 2 | 137 | 287 | 392 | 567 | 1.21e-17 | 83.6 |
| Msa0778690 | MtrunA17_Chr2g0325761 | 40.940 | 149 | 84 | 1 | 137 | 281 | 322 | 470 | 4.35e-16 | 79.0 |
| Msa0778690 | MtrunA17_Chr2g0325761 | 34.459 | 148 | 93 | 1 | 140 | 283 | 269 | 416 | 2.65e-11 | 64.3 |
| Msa0778690 | MtrunA17_Chr2g0325641 | 41.139 | 158 | 83 | 2 | 137 | 287 | 129 | 283 | 1.73e-17 | 81.6 |
| Msa0778690 | MtrunA17_Chr2g0332961 | 44.262 | 122 | 34 | 1 | 15 | 102 | 232 | 353 | 2.47e-17 | 81.6 |
| Msa0778690 | MtrunA17_Chr2g0325291 | 43.750 | 144 | 48 | 2 | 19 | 129 | 5 | 148 | 6.84e-17 | 78.2 |
| Msa0778690 | MtrunA17_Chr5g0434751 | 38.251 | 183 | 81 | 2 | 137 | 287 | 3 | 185 | 3.55e-16 | 77.4 |
| Msa0778690 | MtrunA17_Chr5g0434751 | 38.421 | 190 | 91 | 3 | 137 | 301 | 73 | 261 | 6.03e-14 | 71.2 |
| Msa0778690 | MtrunA17_Chr2g0325791 | 46.237 | 93 | 50 | 0 | 144 | 236 | 63 | 155 | 1.23e-15 | 76.3 |
| Msa0778690 | MtrunA17_Chr2g0325751 | 47.619 | 105 | 44 | 2 | 187 | 287 | 3 | 100 | 8.68e-14 | 68.2 |
| Msa0778690 | MtrunA17_Chr2g0325751 | 38.710 | 124 | 59 | 2 | 149 | 272 | 7 | 113 | 5.10e-11 | 60.5 |
| Msa0778690 | MtrunA17_Chr7g0235921 | 70.833 | 72 | 20 | 1 | 58 | 129 | 13 | 83 | 1.55e-12 | 63.2 |
| Msa0778690 | MtrunA17_Chr2g0325721 | 32.240 | 183 | 92 | 2 | 137 | 287 | 289 | 471 | 1.90e-12 | 67.8 |
| Msa0778690 | MtrunA17_Chr2g0325261 | 38.532 | 109 | 67 | 0 | 125 | 233 | 198 | 306 | 7.35e-12 | 65.1 |
| Msa0778690 | MtrunA17_Chr2g0325341 | 38.532 | 109 | 67 | 0 | 125 | 233 | 198 | 306 | 7.35e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 61 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCAAACTGCTTCTCTTT+TGG | 0.174730 | 5_2:-59493647 | None:intergenic |
| GGTGTTACAAATATAGTTTC+TGG | 0.214668 | 5_2:+59492761 | Msa0778690:CDS |
| TCTTTCGATTTCTTGTAATT+TGG | 0.283246 | 5_2:-59493749 | None:intergenic |
| GAAAATTCTTCGCCAGTTCT+TGG | 0.286363 | 5_2:+59492620 | Msa0778690:CDS |
| TGTTCTCACTGTGGGGTTAT+TGG | 0.295255 | 5_2:+59493692 | Msa0778690:CDS |
| TCAAAAGAGAGGAAATTTAA+AGG | 0.301980 | 5_2:+59493281 | Msa0778690:CDS |
| TTCTTACACAGTGGAGTAAT+GGG | 0.321561 | 5_2:-59492452 | None:intergenic |
| CTGATTTGAGCTCCTTCACT+TGG | 0.334686 | 5_2:-59493346 | None:intergenic |
| TTTCGATGAAGGTGAAGTTT+TGG | 0.365574 | 5_2:+59492682 | Msa0778690:CDS |
| AATCTTGAAGCATTTGCCTT+TGG | 0.384716 | 5_2:-59493720 | None:intergenic |
| CCAAAAGAGAAGCAGTTTGA+TGG | 0.395710 | 5_2:+59493647 | Msa0778690:CDS |
| AGACAAACATTATGAAGAAT+GGG | 0.403930 | 5_2:+59493568 | Msa0778690:CDS |
| CAATTAAGTTCAATCATTGA+TGG | 0.411810 | 5_2:+59492305 | Msa0778690:CDS |
| TATGGAGCTGTTTGAGACCT+TGG | 0.417482 | 5_2:+59492739 | Msa0778690:CDS |
| ATGGAGCTGTTTGAGACCTT+GGG | 0.419434 | 5_2:+59492740 | Msa0778690:CDS |
| CGACAGCCGGGTGAAGGAGC+TGG | 0.429403 | 5_2:+59493256 | Msa0778690:CDS |
| AAGACAAACATTATGAAGAA+TGG | 0.431438 | 5_2:+59493567 | Msa0778690:CDS |
| CTTCTTACACAGTGGAGTAA+TGG | 0.436658 | 5_2:-59492453 | None:intergenic |
| TTGCAGACTTCTTTCGATGA+AGG | 0.448021 | 5_2:+59492671 | Msa0778690:CDS |
| TCAGAAAAGAAGCAACTTCA+AGG | 0.449972 | 5_2:+59493365 | Msa0778690:CDS |
| GGAGTTTGAAGGCCGAGAAA+AGG | 0.451997 | 5_2:+59493460 | Msa0778690:CDS |
| AAGAGAGGAAATTTAAAGGA+TGG | 0.455404 | 5_2:+59493285 | Msa0778690:CDS |
| AGCAGCAGAAAACCAAGAAC+TGG | 0.465884 | 5_2:-59492632 | None:intergenic |
| ACCCCACAGTGAGAACAAAT+TGG | 0.466180 | 5_2:-59493686 | None:intergenic |
| TGATGGAACAAGTTTGCAGT+TGG | 0.484860 | 5_2:+59492322 | Msa0778690:CDS |
| GACCAATTTGTTCTCACTGT+GGG | 0.491222 | 5_2:+59493684 | Msa0778690:CDS |
| TTGAATCCAGCTCCTTCACC+CGG | 0.498463 | 5_2:-59493262 | None:intergenic |
| AAAGGAATTTGAATCAAAAG+AGG | 0.504078 | 5_2:+59493478 | Msa0778690:CDS |
| AAAAGAAGCATTTCGACAGC+CGG | 0.512173 | 5_2:+59493243 | Msa0778690:CDS |
| TTAACAAAGGAGGAGTTTGA+AGG | 0.515186 | 5_2:+59493449 | Msa0778690:CDS |
| TCTCCGATCAAAAGAAAAGT+TGG | 0.518536 | 5_2:+59493400 | Msa0778690:CDS |
| TTAATTGAAACTCCTTCACT+TGG | 0.533006 | 5_2:-59493430 | None:intergenic |
| GCATTTCGACAGCCGGGTGA+AGG | 0.535894 | 5_2:+59493250 | Msa0778690:CDS |
| CAGAAAAGAAGCAACTTCAA+GGG | 0.545868 | 5_2:+59493366 | Msa0778690:CDS |
| AGAGAGGAAATTTAAAGGAT+GGG | 0.546795 | 5_2:+59493286 | Msa0778690:CDS |
| TGCTCGAATGCAGAAGCTCA+AGG | 0.548342 | 5_2:+59493511 | Msa0778690:CDS |
| TGCTCAGCACAAGACAGCTA+TGG | 0.554357 | 5_2:+59492721 | Msa0778690:CDS |
| GGAATTTGAATCAAAAGAGG+AGG | 0.559167 | 5_2:+59493481 | Msa0778690:CDS |
| TTAAAAGAGGAGCAATTCAA+AGG | 0.570735 | 5_2:+59493323 | Msa0778690:CDS |
| GAATTTGAATCAAAAGAGGA+GGG | 0.572816 | 5_2:+59493482 | Msa0778690:CDS |
| GCAACTTCAAGGGGAACTGA+AGG | 0.574091 | 5_2:+59493376 | Msa0778690:CDS |
| GGAGTTTCAATTAACAAAGG+AGG | 0.575218 | 5_2:+59493439 | Msa0778690:CDS |
| AAAGAAGCATTTCGACAGCC+GGG | 0.580882 | 5_2:+59493244 | Msa0778690:CDS |
| GAAGCAGTTAGAATTAAAAG+AGG | 0.582354 | 5_2:+59493310 | Msa0778690:CDS |
| GGGGTTATTGGTCATTCCAA+AGG | 0.585418 | 5_2:+59493704 | Msa0778690:CDS |
| GCAATTCAAAGGCCAAGTGA+AGG | 0.587046 | 5_2:+59493334 | Msa0778690:CDS |
| ACCAATTTGTTCTCACTGTG+GGG | 0.591845 | 5_2:+59493685 | Msa0778690:CDS |
| GCAGTTTGATGGAGGCGTGA+AGG | 0.592056 | 5_2:+59493658 | Msa0778690:CDS |
| CGACCAATTTGTTCTCACTG+TGG | 0.595683 | 5_2:+59493683 | Msa0778690:CDS |
| GAAGGAGTTTCAATTAACAA+AGG | 0.599913 | 5_2:+59493436 | Msa0778690:CDS |
| GACAAACATTATGAAGAATG+GGG | 0.606927 | 5_2:+59493569 | Msa0778690:CDS |
| AACTATATTTGTAACACCCA+AGG | 0.610599 | 5_2:-59492756 | None:intergenic |
| AGAAAAGAAGCAACTTCAAG+GGG | 0.610826 | 5_2:+59493367 | Msa0778690:CDS |
| GCTCGAATGCAGAAGCTCAA+GGG | 0.619664 | 5_2:+59493512 | Msa0778690:CDS |
| GTTGGTTGAAGTCCAAGTGA+AGG | 0.619922 | 5_2:+59493418 | Msa0778690:CDS |
| TATGTTCATAGTTGATGTGA+AGG | 0.632347 | 5_2:+59493616 | Msa0778690:CDS |
| AAAGAGAAGCAGTTTGATGG+AGG | 0.637863 | 5_2:+59493650 | Msa0778690:CDS |
| TCTTACACAGTGGAGTAATG+GGG | 0.646699 | 5_2:-59492451 | None:intergenic |
| GATGGATCTGATGATTCTAG+CGG | 0.657984 | 5_2:-59492401 | None:intergenic |
| ACAAACATTATGAAGAATGG+GGG | 0.666481 | 5_2:+59493570 | Msa0778690:CDS |
| AGGAGCTGGATTCAAAAGAG+AGG | 0.682954 | 5_2:+59493270 | Msa0778690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATCATATGATTTATAAA+AGG | + | chr5_2:59492856-59492875 | Msa0778690:intron | 10.0% |
| !! | TATATCATATGATTTATAAA+AGG | + | chr5_2:59492856-59492875 | Msa0778690:intron | 10.0% |
| !!! | ATGTTAATTTAGAAATGTTT+TGG | + | chr5_2:59492785-59492804 | Msa0778690:intron | 15.0% |
| !!! | TTAATCCATTTTATCATTTA+TGG | + | chr5_2:59492982-59493001 | Msa0778690:intron | 15.0% |
| !!! | ATGTTAATTTAGAAATGTTT+TGG | + | chr5_2:59492785-59492804 | Msa0778690:intron | 15.0% |
| !!! | TTAATCCATTTTATCATTTA+TGG | + | chr5_2:59492982-59493001 | Msa0778690:intron | 15.0% |
| !! | ATAAGATATTATGGTTGTTA+TGG | + | chr5_2:59492904-59492923 | Msa0778690:intron | 20.0% |
| !! | AACTACCATAAATGATAAAA+TGG | - | chr5_2:59492990-59493009 | None:intergenic | 20.0% |
| !! | ATGTAAATAACAAGATATTG+CGG | + | chr5_2:59493068-59493087 | Msa0778690:intron | 20.0% |
| !! | ATAAGATATTATGGTTGTTA+TGG | + | chr5_2:59492904-59492923 | Msa0778690:intron | 20.0% |
| !! | AACTACCATAAATGATAAAA+TGG | - | chr5_2:59492990-59493009 | None:intergenic | 20.0% |
| !! | ATGTAAATAACAAGATATTG+CGG | + | chr5_2:59493068-59493087 | Msa0778690:intron | 20.0% |
| ! | CAATTAAGTTCAATCATTGA+TGG | + | chr5_2:59492305-59492324 | Msa0778690:CDS | 25.0% |
| ! | ATATCAAAAACAAGTCTTGA+TGG | - | chr5_2:59492422-59492441 | None:intergenic | 25.0% |
| ! | ATACCAAGCATAAACATAAA+GGG | - | chr5_2:59492829-59492848 | None:intergenic | 25.0% |
| ! | AATACCAAGCATAAACATAA+AGG | - | chr5_2:59492830-59492849 | None:intergenic | 25.0% |
| !!! | GAAGGAGTTTTTATTTAAGT+TGG | + | chr5_2:59493184-59493203 | Msa0778690:intron | 25.0% |
| ! | GAAATTTCAATGCTAAACAA+AGG | + | chr5_2:59493208-59493227 | Msa0778690:intron | 25.0% |
| ! | TCAAAAGAGAGGAAATTTAA+AGG | + | chr5_2:59493281-59493300 | Msa0778690:CDS | 25.0% |
| !! | TTGATTCAAATTCCTTTTCT+CGG | - | chr5_2:59493475-59493494 | None:intergenic | 25.0% |
| ! | AAAGGAATTTGAATCAAAAG+AGG | + | chr5_2:59493478-59493497 | Msa0778690:CDS | 25.0% |
| ! | AAGACAAACATTATGAAGAA+TGG | + | chr5_2:59493567-59493586 | Msa0778690:CDS | 25.0% |
| ! | AGACAAACATTATGAAGAAT+GGG | + | chr5_2:59493568-59493587 | Msa0778690:CDS | 25.0% |
| ! | TCTTTCGATTTCTTGTAATT+TGG | - | chr5_2:59493752-59493771 | None:intergenic | 25.0% |
| ! | CAATTAAGTTCAATCATTGA+TGG | + | chr5_2:59492305-59492324 | Msa0778690:CDS | 25.0% |
| ! | ATATCAAAAACAAGTCTTGA+TGG | - | chr5_2:59492422-59492441 | None:intergenic | 25.0% |
| ! | ATACCAAGCATAAACATAAA+GGG | - | chr5_2:59492829-59492848 | None:intergenic | 25.0% |
| ! | AATACCAAGCATAAACATAA+AGG | - | chr5_2:59492830-59492849 | None:intergenic | 25.0% |
| !!! | GAAGGAGTTTTTATTTAAGT+TGG | + | chr5_2:59493184-59493203 | Msa0778690:intron | 25.0% |
| ! | GAAATTTCAATGCTAAACAA+AGG | + | chr5_2:59493208-59493227 | Msa0778690:intron | 25.0% |
| ! | TCAAAAGAGAGGAAATTTAA+AGG | + | chr5_2:59493281-59493300 | Msa0778690:CDS | 25.0% |
| !! | TTGATTCAAATTCCTTTTCT+CGG | - | chr5_2:59493475-59493494 | None:intergenic | 25.0% |
| ! | AAAGGAATTTGAATCAAAAG+AGG | + | chr5_2:59493478-59493497 | Msa0778690:CDS | 25.0% |
| ! | AAGACAAACATTATGAAGAA+TGG | + | chr5_2:59493567-59493586 | Msa0778690:CDS | 25.0% |
| ! | AGACAAACATTATGAAGAAT+GGG | + | chr5_2:59493568-59493587 | Msa0778690:CDS | 25.0% |
| ! | TCTTTCGATTTCTTGTAATT+TGG | - | chr5_2:59493752-59493771 | None:intergenic | 25.0% |
| CTTACACAAGGTTTAATAGT+TGG | - | chr5_2:59492545-59492564 | None:intergenic | 30.0% | |
| !!! | AATGCTTTTTCTCTTACACA+AGG | - | chr5_2:59492557-59492576 | None:intergenic | 30.0% |
| AACTATATTTGTAACACCCA+AGG | - | chr5_2:59492759-59492778 | None:intergenic | 30.0% | |
| ! | GGTGTTACAAATATAGTTTC+TGG | + | chr5_2:59492761-59492780 | Msa0778690:CDS | 30.0% |
| GCAGTTACGATAAGATATTA+TGG | + | chr5_2:59492895-59492914 | Msa0778690:intron | 30.0% | |
| !! | TTATTAGCCTACTCTAAGAT+AGG | + | chr5_2:59492950-59492969 | Msa0778690:intron | 30.0% |
| !! | TATTAGCCTACTCTAAGATA+GGG | + | chr5_2:59492951-59492970 | Msa0778690:intron | 30.0% |
| ! | TTATGGTAGTTGTAGTTTGT+AGG | + | chr5_2:59492999-59493018 | Msa0778690:intron | 30.0% |
| ATAAAAGAGAATCAGCTCAA+AGG | + | chr5_2:59493155-59493174 | Msa0778690:intron | 30.0% | |
| AAGAGAGGAAATTTAAAGGA+TGG | + | chr5_2:59493285-59493304 | Msa0778690:CDS | 30.0% | |
| AGAGAGGAAATTTAAAGGAT+GGG | + | chr5_2:59493286-59493305 | Msa0778690:CDS | 30.0% | |
| GAAGCAGTTAGAATTAAAAG+AGG | + | chr5_2:59493310-59493329 | Msa0778690:CDS | 30.0% | |
| TTAAAAGAGGAGCAATTCAA+AGG | + | chr5_2:59493323-59493342 | Msa0778690:CDS | 30.0% | |
| ! | CAACCAACTTTTCTTTTGAT+CGG | - | chr5_2:59493406-59493425 | None:intergenic | 30.0% |
| TTAATTGAAACTCCTTCACT+TGG | - | chr5_2:59493433-59493452 | None:intergenic | 30.0% | |
| GAAGGAGTTTCAATTAACAA+AGG | + | chr5_2:59493436-59493455 | Msa0778690:CDS | 30.0% | |
| GAATTTGAATCAAAAGAGGA+GGG | + | chr5_2:59493482-59493501 | Msa0778690:CDS | 30.0% | |
| GACAAACATTATGAAGAATG+GGG | + | chr5_2:59493569-59493588 | Msa0778690:CDS | 30.0% | |
| ACAAACATTATGAAGAATGG+GGG | + | chr5_2:59493570-59493589 | Msa0778690:CDS | 30.0% | |
| ! | TATGTTCATAGTTGATGTGA+AGG | + | chr5_2:59493616-59493635 | Msa0778690:CDS | 30.0% |
| CTTACACAAGGTTTAATAGT+TGG | - | chr5_2:59492545-59492564 | None:intergenic | 30.0% | |
| !!! | AATGCTTTTTCTCTTACACA+AGG | - | chr5_2:59492557-59492576 | None:intergenic | 30.0% |
| AACTATATTTGTAACACCCA+AGG | - | chr5_2:59492759-59492778 | None:intergenic | 30.0% | |
| ! | GGTGTTACAAATATAGTTTC+TGG | + | chr5_2:59492761-59492780 | Msa0778690:CDS | 30.0% |
| GCAGTTACGATAAGATATTA+TGG | + | chr5_2:59492895-59492914 | Msa0778690:intron | 30.0% | |
| !! | TTATTAGCCTACTCTAAGAT+AGG | + | chr5_2:59492950-59492969 | Msa0778690:intron | 30.0% |
| !! | TATTAGCCTACTCTAAGATA+GGG | + | chr5_2:59492951-59492970 | Msa0778690:intron | 30.0% |
| ! | TTATGGTAGTTGTAGTTTGT+AGG | + | chr5_2:59492999-59493018 | Msa0778690:intron | 30.0% |
| ATAAAAGAGAATCAGCTCAA+AGG | + | chr5_2:59493155-59493174 | Msa0778690:intron | 30.0% | |
| AAGAGAGGAAATTTAAAGGA+TGG | + | chr5_2:59493285-59493304 | Msa0778690:CDS | 30.0% | |
| AGAGAGGAAATTTAAAGGAT+GGG | + | chr5_2:59493286-59493305 | Msa0778690:CDS | 30.0% | |
| GAAGCAGTTAGAATTAAAAG+AGG | + | chr5_2:59493310-59493329 | Msa0778690:CDS | 30.0% | |
| TTAAAAGAGGAGCAATTCAA+AGG | + | chr5_2:59493323-59493342 | Msa0778690:CDS | 30.0% | |
| ! | CAACCAACTTTTCTTTTGAT+CGG | - | chr5_2:59493406-59493425 | None:intergenic | 30.0% |
| TTAATTGAAACTCCTTCACT+TGG | - | chr5_2:59493433-59493452 | None:intergenic | 30.0% | |
| GAAGGAGTTTCAATTAACAA+AGG | + | chr5_2:59493436-59493455 | Msa0778690:CDS | 30.0% | |
| GAATTTGAATCAAAAGAGGA+GGG | + | chr5_2:59493482-59493501 | Msa0778690:CDS | 30.0% | |
| GACAAACATTATGAAGAATG+GGG | + | chr5_2:59493569-59493588 | Msa0778690:CDS | 30.0% | |
| ACAAACATTATGAAGAATGG+GGG | + | chr5_2:59493570-59493589 | Msa0778690:CDS | 30.0% | |
| ! | TATGTTCATAGTTGATGTGA+AGG | + | chr5_2:59493616-59493635 | Msa0778690:CDS | 30.0% |
| TTCTTACACAGTGGAGTAAT+GGG | - | chr5_2:59492455-59492474 | None:intergenic | 35.0% | |
| ATTACTCCACTGTGTAAGAA+GGG | + | chr5_2:59492455-59492474 | Msa0778690:intron | 35.0% | |
| !!! | CTGCTGCTTTTGTCAATTTA+TGG | + | chr5_2:59492647-59492666 | Msa0778690:CDS | 35.0% |
| ! | TTTCGATGAAGGTGAAGTTT+TGG | + | chr5_2:59492682-59492701 | Msa0778690:CDS | 35.0% |
| AAACATAAAGGGAGAGATAC+TGG | - | chr5_2:59492818-59492837 | None:intergenic | 35.0% | |
| TCTCCCTTTATGTTTATGCT+TGG | + | chr5_2:59492823-59492842 | Msa0778690:intron | 35.0% | |
| ! | GTAGTTGTAGTTTGTAGGAA+TGG | + | chr5_2:59493004-59493023 | Msa0778690:intron | 35.0% |
| TCAGAAAAGAAGCAACTTCA+AGG | + | chr5_2:59493365-59493384 | Msa0778690:CDS | 35.0% | |
| CAGAAAAGAAGCAACTTCAA+GGG | + | chr5_2:59493366-59493385 | Msa0778690:CDS | 35.0% | |
| AGAAAAGAAGCAACTTCAAG+GGG | + | chr5_2:59493367-59493386 | Msa0778690:CDS | 35.0% | |
| TCTCCGATCAAAAGAAAAGT+TGG | + | chr5_2:59493400-59493419 | Msa0778690:CDS | 35.0% | |
| GGAGTTTCAATTAACAAAGG+AGG | + | chr5_2:59493439-59493458 | Msa0778690:CDS | 35.0% | |
| TTAACAAAGGAGGAGTTTGA+AGG | + | chr5_2:59493449-59493468 | Msa0778690:CDS | 35.0% | |
| GGAATTTGAATCAAAAGAGG+AGG | + | chr5_2:59493481-59493500 | Msa0778690:CDS | 35.0% | |
| !! | CAAGGGTTTTGTAAGTCAAA+TGG | + | chr5_2:59493529-59493548 | Msa0778690:CDS | 35.0% |
| ! | AATCTTGAAGCATTTGCCTT+TGG | - | chr5_2:59493723-59493742 | None:intergenic | 35.0% |
| TTCTTACACAGTGGAGTAAT+GGG | - | chr5_2:59492455-59492474 | None:intergenic | 35.0% | |
| ATTACTCCACTGTGTAAGAA+GGG | + | chr5_2:59492455-59492474 | Msa0778690:intron | 35.0% | |
| !!! | CTGCTGCTTTTGTCAATTTA+TGG | + | chr5_2:59492647-59492666 | Msa0778690:CDS | 35.0% |
| ! | TTTCGATGAAGGTGAAGTTT+TGG | + | chr5_2:59492682-59492701 | Msa0778690:CDS | 35.0% |
| AAACATAAAGGGAGAGATAC+TGG | - | chr5_2:59492818-59492837 | None:intergenic | 35.0% | |
| TCTCCCTTTATGTTTATGCT+TGG | + | chr5_2:59492823-59492842 | Msa0778690:intron | 35.0% | |
| ! | GTAGTTGTAGTTTGTAGGAA+TGG | + | chr5_2:59493004-59493023 | Msa0778690:intron | 35.0% |
| TCAGAAAAGAAGCAACTTCA+AGG | + | chr5_2:59493365-59493384 | Msa0778690:CDS | 35.0% | |
| CAGAAAAGAAGCAACTTCAA+GGG | + | chr5_2:59493366-59493385 | Msa0778690:CDS | 35.0% | |
| AGAAAAGAAGCAACTTCAAG+GGG | + | chr5_2:59493367-59493386 | Msa0778690:CDS | 35.0% | |
| TCTCCGATCAAAAGAAAAGT+TGG | + | chr5_2:59493400-59493419 | Msa0778690:CDS | 35.0% | |
| GGAGTTTCAATTAACAAAGG+AGG | + | chr5_2:59493439-59493458 | Msa0778690:CDS | 35.0% | |
| TTAACAAAGGAGGAGTTTGA+AGG | + | chr5_2:59493449-59493468 | Msa0778690:CDS | 35.0% | |
| GGAATTTGAATCAAAAGAGG+AGG | + | chr5_2:59493481-59493500 | Msa0778690:CDS | 35.0% | |
| !! | CAAGGGTTTTGTAAGTCAAA+TGG | + | chr5_2:59493529-59493548 | Msa0778690:CDS | 35.0% |
| ! | AATCTTGAAGCATTTGCCTT+TGG | - | chr5_2:59493723-59493742 | None:intergenic | 35.0% |
| TGATGGAACAAGTTTGCAGT+TGG | + | chr5_2:59492322-59492341 | Msa0778690:CDS | 40.0% | |
| GATGGATCTGATGATTCTAG+CGG | - | chr5_2:59492404-59492423 | None:intergenic | 40.0% | |
| TCTTACACAGTGGAGTAATG+GGG | - | chr5_2:59492454-59492473 | None:intergenic | 40.0% | |
| CTTCTTACACAGTGGAGTAA+TGG | - | chr5_2:59492456-59492475 | None:intergenic | 40.0% | |
| CATTACTCCACTGTGTAAGA+AGG | + | chr5_2:59492454-59492473 | Msa0778690:intron | 40.0% | |
| GTTCTTCTAGCAGATAGATG+TGG | - | chr5_2:59492508-59492527 | None:intergenic | 40.0% | |
| GAAAATTCTTCGCCAGTTCT+TGG | + | chr5_2:59492620-59492639 | Msa0778690:CDS | 40.0% | |
| TTGCAGACTTCTTTCGATGA+AGG | + | chr5_2:59492671-59492690 | Msa0778690:CDS | 40.0% | |
| !! | AAAAGAAGCATTTCGACAGC+CGG | + | chr5_2:59493243-59493262 | Msa0778690:CDS | 40.0% |
| ! | CCATCAAACTGCTTCTCTTT+TGG | - | chr5_2:59493650-59493669 | None:intergenic | 40.0% |
| CCAAAAGAGAAGCAGTTTGA+TGG | + | chr5_2:59493647-59493666 | Msa0778690:CDS | 40.0% | |
| AAAGAGAAGCAGTTTGATGG+AGG | + | chr5_2:59493650-59493669 | Msa0778690:CDS | 40.0% | |
| ! | GACCAATTTGTTCTCACTGT+GGG | + | chr5_2:59493684-59493703 | Msa0778690:CDS | 40.0% |
| ! | ACCAATTTGTTCTCACTGTG+GGG | + | chr5_2:59493685-59493704 | Msa0778690:CDS | 40.0% |
| TGATGGAACAAGTTTGCAGT+TGG | + | chr5_2:59492322-59492341 | Msa0778690:CDS | 40.0% | |
| GATGGATCTGATGATTCTAG+CGG | - | chr5_2:59492404-59492423 | None:intergenic | 40.0% | |
| TCTTACACAGTGGAGTAATG+GGG | - | chr5_2:59492454-59492473 | None:intergenic | 40.0% | |
| CTTCTTACACAGTGGAGTAA+TGG | - | chr5_2:59492456-59492475 | None:intergenic | 40.0% | |
| CATTACTCCACTGTGTAAGA+AGG | + | chr5_2:59492454-59492473 | Msa0778690:intron | 40.0% | |
| GTTCTTCTAGCAGATAGATG+TGG | - | chr5_2:59492508-59492527 | None:intergenic | 40.0% | |
| GAAAATTCTTCGCCAGTTCT+TGG | + | chr5_2:59492620-59492639 | Msa0778690:CDS | 40.0% | |
| TTGCAGACTTCTTTCGATGA+AGG | + | chr5_2:59492671-59492690 | Msa0778690:CDS | 40.0% | |
| !! | AAAAGAAGCATTTCGACAGC+CGG | + | chr5_2:59493243-59493262 | Msa0778690:CDS | 40.0% |
| ! | CCATCAAACTGCTTCTCTTT+TGG | - | chr5_2:59493650-59493669 | None:intergenic | 40.0% |
| CCAAAAGAGAAGCAGTTTGA+TGG | + | chr5_2:59493647-59493666 | Msa0778690:CDS | 40.0% | |
| AAAGAGAAGCAGTTTGATGG+AGG | + | chr5_2:59493650-59493669 | Msa0778690:CDS | 40.0% | |
| ! | GACCAATTTGTTCTCACTGT+GGG | + | chr5_2:59493684-59493703 | Msa0778690:CDS | 40.0% |
| ! | ACCAATTTGTTCTCACTGTG+GGG | + | chr5_2:59493685-59493704 | Msa0778690:CDS | 40.0% |
| TTGTCTCCCTTCTTACACAG+TGG | - | chr5_2:59492464-59492483 | None:intergenic | 45.0% | |
| AGCAGCAGAAAACCAAGAAC+TGG | - | chr5_2:59492635-59492654 | None:intergenic | 45.0% | |
| ! | TATGGAGCTGTTTGAGACCT+TGG | + | chr5_2:59492739-59492758 | Msa0778690:CDS | 45.0% |
| ! | ATGGAGCTGTTTGAGACCTT+GGG | + | chr5_2:59492740-59492759 | Msa0778690:CDS | 45.0% |
| !! | TAGCCTACTCTAAGATAGGG+TGG | + | chr5_2:59492954-59492973 | Msa0778690:intron | 45.0% |
| TTGCCACCCTATCTTAGAGT+AGG | - | chr5_2:59492960-59492979 | None:intergenic | 45.0% | |
| AAGATATTGCGGAGAACGAG+CGG | + | chr5_2:59493079-59493098 | Msa0778690:intron | 45.0% | |
| TCCAAGGAGAAGCTCTTTGA+AGG | + | chr5_2:59493113-59493132 | Msa0778690:intron | 45.0% | |
| ACCTTCAAAGAGCTTCTCCT+TGG | - | chr5_2:59493117-59493136 | None:intergenic | 45.0% | |
| ! | GCTCTTTGAAGGTCGTGTAA+AGG | + | chr5_2:59493124-59493143 | Msa0778690:intron | 45.0% |
| TCAGCTCAAAGGCAAAGTGA+AGG | + | chr5_2:59493166-59493185 | Msa0778690:intron | 45.0% | |
| !! | AAAGAAGCATTTCGACAGCC+GGG | + | chr5_2:59493244-59493263 | Msa0778690:CDS | 45.0% |
| AGGAGCTGGATTCAAAAGAG+AGG | + | chr5_2:59493270-59493289 | Msa0778690:CDS | 45.0% | |
| GCAATTCAAAGGCCAAGTGA+AGG | + | chr5_2:59493334-59493353 | Msa0778690:CDS | 45.0% | |
| ! | CTGATTTGAGCTCCTTCACT+TGG | - | chr5_2:59493349-59493368 | None:intergenic | 45.0% |
| GTTGGTTGAAGTCCAAGTGA+AGG | + | chr5_2:59493418-59493437 | Msa0778690:CDS | 45.0% | |
| ! | CGACCAATTTGTTCTCACTG+TGG | + | chr5_2:59493683-59493702 | Msa0778690:CDS | 45.0% |
| ACCCCACAGTGAGAACAAAT+TGG | - | chr5_2:59493689-59493708 | None:intergenic | 45.0% | |
| TGTTCTCACTGTGGGGTTAT+TGG | + | chr5_2:59493692-59493711 | Msa0778690:CDS | 45.0% | |
| GGGGTTATTGGTCATTCCAA+AGG | + | chr5_2:59493704-59493723 | Msa0778690:CDS | 45.0% | |
| TTGTCTCCCTTCTTACACAG+TGG | - | chr5_2:59492464-59492483 | None:intergenic | 45.0% | |
| AGCAGCAGAAAACCAAGAAC+TGG | - | chr5_2:59492635-59492654 | None:intergenic | 45.0% | |
| ! | TATGGAGCTGTTTGAGACCT+TGG | + | chr5_2:59492739-59492758 | Msa0778690:CDS | 45.0% |
| ! | ATGGAGCTGTTTGAGACCTT+GGG | + | chr5_2:59492740-59492759 | Msa0778690:CDS | 45.0% |
| !! | TAGCCTACTCTAAGATAGGG+TGG | + | chr5_2:59492954-59492973 | Msa0778690:intron | 45.0% |
| TTGCCACCCTATCTTAGAGT+AGG | - | chr5_2:59492960-59492979 | None:intergenic | 45.0% | |
| AAGATATTGCGGAGAACGAG+CGG | + | chr5_2:59493079-59493098 | Msa0778690:intron | 45.0% | |
| TCCAAGGAGAAGCTCTTTGA+AGG | + | chr5_2:59493113-59493132 | Msa0778690:intron | 45.0% | |
| ACCTTCAAAGAGCTTCTCCT+TGG | - | chr5_2:59493117-59493136 | None:intergenic | 45.0% | |
| ! | GCTCTTTGAAGGTCGTGTAA+AGG | + | chr5_2:59493124-59493143 | Msa0778690:intron | 45.0% |
| TCAGCTCAAAGGCAAAGTGA+AGG | + | chr5_2:59493166-59493185 | Msa0778690:intron | 45.0% | |
| !! | AAAGAAGCATTTCGACAGCC+GGG | + | chr5_2:59493244-59493263 | Msa0778690:CDS | 45.0% |
| AGGAGCTGGATTCAAAAGAG+AGG | + | chr5_2:59493270-59493289 | Msa0778690:CDS | 45.0% | |
| GCAATTCAAAGGCCAAGTGA+AGG | + | chr5_2:59493334-59493353 | Msa0778690:CDS | 45.0% | |
| ! | CTGATTTGAGCTCCTTCACT+TGG | - | chr5_2:59493349-59493368 | None:intergenic | 45.0% |
| GTTGGTTGAAGTCCAAGTGA+AGG | + | chr5_2:59493418-59493437 | Msa0778690:CDS | 45.0% | |
| ! | CGACCAATTTGTTCTCACTG+TGG | + | chr5_2:59493683-59493702 | Msa0778690:CDS | 45.0% |
| ACCCCACAGTGAGAACAAAT+TGG | - | chr5_2:59493689-59493708 | None:intergenic | 45.0% | |
| TGTTCTCACTGTGGGGTTAT+TGG | + | chr5_2:59493692-59493711 | Msa0778690:CDS | 45.0% | |
| GGGGTTATTGGTCATTCCAA+AGG | + | chr5_2:59493704-59493723 | Msa0778690:CDS | 45.0% | |
| TGCTCAGCACAAGACAGCTA+TGG | + | chr5_2:59492721-59492740 | Msa0778690:CDS | 50.0% | |
| TTGAATCCAGCTCCTTCACC+CGG | - | chr5_2:59493265-59493284 | None:intergenic | 50.0% | |
| GCAACTTCAAGGGGAACTGA+AGG | + | chr5_2:59493376-59493395 | Msa0778690:CDS | 50.0% | |
| GGAGTTTGAAGGCCGAGAAA+AGG | + | chr5_2:59493460-59493479 | Msa0778690:CDS | 50.0% | |
| TGCTCGAATGCAGAAGCTCA+AGG | + | chr5_2:59493511-59493530 | Msa0778690:CDS | 50.0% | |
| GCTCGAATGCAGAAGCTCAA+GGG | + | chr5_2:59493512-59493531 | Msa0778690:CDS | 50.0% | |
| TGAAGAATGGGGGAAAGAGC+TGG | + | chr5_2:59493580-59493599 | Msa0778690:CDS | 50.0% | |
| TGCTCAGCACAAGACAGCTA+TGG | + | chr5_2:59492721-59492740 | Msa0778690:CDS | 50.0% | |
| TTGAATCCAGCTCCTTCACC+CGG | - | chr5_2:59493265-59493284 | None:intergenic | 50.0% | |
| GCAACTTCAAGGGGAACTGA+AGG | + | chr5_2:59493376-59493395 | Msa0778690:CDS | 50.0% | |
| GGAGTTTGAAGGCCGAGAAA+AGG | + | chr5_2:59493460-59493479 | Msa0778690:CDS | 50.0% | |
| TGCTCGAATGCAGAAGCTCA+AGG | + | chr5_2:59493511-59493530 | Msa0778690:CDS | 50.0% | |
| GCTCGAATGCAGAAGCTCAA+GGG | + | chr5_2:59493512-59493531 | Msa0778690:CDS | 50.0% | |
| TGAAGAATGGGGGAAAGAGC+TGG | + | chr5_2:59493580-59493599 | Msa0778690:CDS | 50.0% | |
| ATATTGCGGAGAACGAGCGG+TGG | + | chr5_2:59493082-59493101 | Msa0778690:intron | 55.0% | |
| ! | GCAGTTTGATGGAGGCGTGA+AGG | + | chr5_2:59493658-59493677 | Msa0778690:CDS | 55.0% |
| ATATTGCGGAGAACGAGCGG+TGG | + | chr5_2:59493082-59493101 | Msa0778690:intron | 55.0% | |
| ! | GCAGTTTGATGGAGGCGTGA+AGG | + | chr5_2:59493658-59493677 | Msa0778690:CDS | 55.0% |
| AGCGGTGGAGCTTGAGTCCA+AGG | + | chr5_2:59493097-59493116 | Msa0778690:intron | 60.0% | |
| GCATTTCGACAGCCGGGTGA+AGG | + | chr5_2:59493250-59493269 | Msa0778690:CDS | 60.0% | |
| AGCGGTGGAGCTTGAGTCCA+AGG | + | chr5_2:59493097-59493116 | Msa0778690:intron | 60.0% | |
| GCATTTCGACAGCCGGGTGA+AGG | + | chr5_2:59493250-59493269 | Msa0778690:CDS | 60.0% | |
| CGACAGCCGGGTGAAGGAGC+TGG | + | chr5_2:59493256-59493275 | Msa0778690:CDS | 70.0% | |
| CGACAGCCGGGTGAAGGAGC+TGG | + | chr5_2:59493256-59493275 | Msa0778690:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 59492296 | 59493778 | 59492296 | ID=Msa0778690;Name=Msa0778690 |
| chr5_2 | mRNA | 59492296 | 59493778 | 59492296 | ID=Msa0778690-mRNA-1;Parent=Msa0778690;Name=Msa0778690-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|0|0|0.75|1|1|4|0|318 |
| chr5_2 | exon | 59492296 | 59492465 | 59492296 | ID=Msa0778690-mRNA-1:exon:17482;Parent=Msa0778690-mRNA-1 |
| chr5_2 | exon | 59492565 | 59492782 | 59492565 | ID=Msa0778690-mRNA-1:exon:17483;Parent=Msa0778690-mRNA-1 |
| chr5_2 | exon | 59492878 | 59492897 | 59492878 | ID=Msa0778690-mRNA-1:exon:17484;Parent=Msa0778690-mRNA-1 |
| chr5_2 | exon | 59493230 | 59493778 | 59493230 | ID=Msa0778690-mRNA-1:exon:17485;Parent=Msa0778690-mRNA-1 |
| chr5_2 | CDS | 59492296 | 59492465 | 59492296 | ID=Msa0778690-mRNA-1:cds;Parent=Msa0778690-mRNA-1 |
| chr5_2 | CDS | 59492565 | 59492782 | 59492565 | ID=Msa0778690-mRNA-1:cds;Parent=Msa0778690-mRNA-1 |
| chr5_2 | CDS | 59492878 | 59492897 | 59492878 | ID=Msa0778690-mRNA-1:cds;Parent=Msa0778690-mRNA-1 |
| chr5_2 | CDS | 59493230 | 59493778 | 59493230 | ID=Msa0778690-mRNA-1:cds;Parent=Msa0778690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
