AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0737400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0737400 MtrunA17_Chr5g0435161 90.000 80 0 1 1 80 1 72 4.05e-46 147
Msa0737400 MtrunA17_Chr2g0328831 90.000 80 0 1 1 80 1 72 4.14e-46 147
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0737400 AT3G60820.2 77.500 80 10 1 1 80 1 72 7.16e-39 129
Msa0737400 AT3G60820.1 77.500 80 10 1 1 80 1 72 7.64e-39 129
Msa0737400 AT3G60820.3 77.500 80 10 1 1 80 1 72 7.64e-39 129

Find 39 sgRNAs with CRISPR-Local

Find 460 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACAAATGAATGGAGAATT+TGG 0.260362 5_1:-54648318 Msa0737400:three_prime_UTR
GATGAATACCACTGGCATTT+AGG 0.287368 5_1:+54648602 None:intergenic
TGACCAAACAACACGCTAAT+TGG 0.299095 5_1:-54652254 Msa0737400:CDS
AGATCTTGTGTTGCAATTGC+TGG 0.324649 5_1:-54652120 Msa0737400:CDS
AGCGTACAAGTGTGAGATTT+TGG 0.327605 5_1:+54652026 None:intergenic
AAATGTGTTATGGCTTCTTC+TGG 0.334407 5_1:-54651904 Msa0737400:CDS
AATGAGTATATATAATGATT+TGG 0.344849 5_1:+54652344 None:intergenic
TTGTTTGGTCATGGTGAAAT+TGG 0.350670 5_1:+54652266 None:intergenic
CTAGACCACATTCAGAATTT+CGG 0.356507 5_1:+54648490 None:intergenic
ACTTGAATAAAGATAAGAAA+TGG 0.362706 5_1:+54648350 None:intergenic
CGCGGCGATAACACAGTAAT+CGG 0.412401 5_1:+54652095 None:intergenic
TACCCTCCATTGTTGTCATA+TGG 0.414177 5_1:+54652228 None:intergenic
CGAAATTCTGAATGTGGTCT+AGG 0.435947 5_1:-54648489 Msa0737400:three_prime_UTR
AGACCAATTAGCGTGTTGTT+TGG 0.453572 5_1:+54652251 None:intergenic
TGGTATTCATCGTGAATTCA+TGG 0.458322 5_1:-54648590 Msa0737400:CDS
AAAAGCATCAGTCTTTCCTT+AGG 0.465104 5_1:+54648566 None:intergenic
GAAAGCGTTAAGAAAGAAGA+AGG 0.465593 5_1:+54652307 None:intergenic
AGAAGAAGGGTGTCGTGAAG+AGG 0.493356 5_1:+54652321 None:intergenic
ACGAGTGAGGATGTTGTAAC+CGG 0.502203 5_1:+54652056 None:intergenic
CTTGAATAAAGATAAGAAAT+GGG 0.504739 5_1:+54648351 None:intergenic
CAGGGCTGAGAAATGTGTTA+TGG 0.517173 5_1:-54651914 Msa0737400:CDS
GGGTTTCTTTCTTGTTCAAG+AGG 0.530010 5_1:+54652375 None:intergenic
ATCGTGAATTCATGGACCTA+AGG 0.538648 5_1:-54648582 Msa0737400:CDS
GGTTTCTTTCTTGTTCAAGA+GGG 0.564666 5_1:+54652376 None:intergenic
TGATGTCAAGGCTTTGCAGA+AGG 0.566876 5_1:-54651872 Msa0737400:intron
CTATTGCGTTGACAAATGAA+TGG 0.570703 5_1:-54648327 Msa0737400:three_prime_UTR
CTCCATATGACAACAATGGA+GGG 0.588306 5_1:-54652230 Msa0737400:intron
AAAGCGTTAAGAAAGAAGAA+GGG 0.594392 5_1:+54652308 None:intergenic
ATACTCCGAAATTCTGAATG+TGG 0.594411 5_1:-54648495 Msa0737400:three_prime_UTR
ATAAAGATAAGAAATGGGCT+CGG 0.601964 5_1:+54648356 None:intergenic
GAATTCACGATGAATACCAC+TGG 0.608804 5_1:+54648594 None:intergenic
ATTAGCGTGTTGTTTGGTCA+TGG 0.614741 5_1:+54652257 None:intergenic
GTGTTATCGCCGCGGATACG+AGG 0.627619 5_1:-54652086 Msa0737400:CDS
TCTCCATATGACAACAATGG+AGG 0.635572 5_1:-54652231 Msa0737400:CDS
TGGTCTCCATATGACAACAA+TGG 0.646174 5_1:-54652234 Msa0737400:CDS
GGTAGACATCCTCGTATCCG+CGG 0.665904 5_1:+54652077 None:intergenic
ATTGTCATCCTAAATGCCAG+TGG 0.678670 5_1:-54648610 Msa0737400:CDS
GCGGATACGAGGATGTCTAC+CGG 0.703907 5_1:-54652075 Msa0737400:CDS
CGATTACTGTGTTATCGCCG+CGG 0.718453 5_1:-54652094 Msa0737400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTTTATTTTTTGTTTT+TGG - chr5_1:54650426-54650445 Msa0737400:intron 10.0%
!! TGAATATATAAATTTCTTTA+TGG - chr5_1:54650517-54650536 Msa0737400:intron 10.0%
!!! AATAAAATAATAATCACTTT+TGG + chr5_1:54651606-54651625 None:intergenic 10.0%
!!! CTTTTTTTATTTTTTGTTTT+TGG - chr5_1:54650426-54650445 Msa0737400:intron 10.0%
!! TGAATATATAAATTTCTTTA+TGG - chr5_1:54650517-54650536 Msa0737400:intron 10.0%
!!! AATAAAATAATAATCACTTT+TGG + chr5_1:54651606-54651625 None:intergenic 10.0%
!!! ATAATGATTTGGTTTTATTT+GGG + chr5_1:54648346-54648365 None:intergenic 15.0%
!!! TATAATGATTTGGTTTTATT+TGG + chr5_1:54648347-54648366 None:intergenic 15.0%
!! AATGAGTATATATAATGATT+TGG + chr5_1:54648357-54648376 None:intergenic 15.0%
!!! TATGAAAATAAGTTGAAAAA+AGG - chr5_1:54649049-54649068 Msa0737400:intron 15.0%
!! AATCTAAATAGTATAACTTA+GGG + chr5_1:54649269-54649288 None:intergenic 15.0%
!! AAAACATTGAAAGAATAATA+AGG + chr5_1:54651046-54651065 None:intergenic 15.0%
!!! TTATTATTCTTTCAATGTTT+TGG - chr5_1:54651045-54651064 Msa0737400:intron 15.0%
!!! TATTATTCTTTCAATGTTTT+GGG - chr5_1:54651046-54651065 Msa0737400:intron 15.0%
!!! ATAATTTAGAGATACTTTTT+TGG - chr5_1:54651399-54651418 Msa0737400:intron 15.0%
!!! TAAATCATATTTTAATGTAG+AGG + chr5_1:54651678-54651697 None:intergenic 15.0%
!! ATTAAAATATGATTTATTGC+AGG - chr5_1:54651682-54651701 Msa0737400:intron 15.0%
!! AAAATGACATTTATGTAAAA+GGG + chr5_1:54652007-54652026 None:intergenic 15.0%
!! TAAAATGACATTTATGTAAA+AGG + chr5_1:54652008-54652027 None:intergenic 15.0%
!!! ATAATGATTTGGTTTTATTT+GGG + chr5_1:54648346-54648365 None:intergenic 15.0%
!!! TATAATGATTTGGTTTTATT+TGG + chr5_1:54648347-54648366 None:intergenic 15.0%
!! AATGAGTATATATAATGATT+TGG + chr5_1:54648357-54648376 None:intergenic 15.0%
!!! TATGAAAATAAGTTGAAAAA+AGG - chr5_1:54649049-54649068 Msa0737400:intron 15.0%
!! AATCTAAATAGTATAACTTA+GGG + chr5_1:54649269-54649288 None:intergenic 15.0%
!! AAAACATTGAAAGAATAATA+AGG + chr5_1:54651046-54651065 None:intergenic 15.0%
!!! TTATTATTCTTTCAATGTTT+TGG - chr5_1:54651045-54651064 Msa0737400:intron 15.0%
!!! TATTATTCTTTCAATGTTTT+GGG - chr5_1:54651046-54651065 Msa0737400:intron 15.0%
!!! ATAATTTAGAGATACTTTTT+TGG - chr5_1:54651399-54651418 Msa0737400:intron 15.0%
!!! TAAATCATATTTTAATGTAG+AGG + chr5_1:54651678-54651697 None:intergenic 15.0%
!! ATTAAAATATGATTTATTGC+AGG - chr5_1:54651682-54651701 Msa0737400:intron 15.0%
!! AAAATGACATTTATGTAAAA+GGG + chr5_1:54652007-54652026 None:intergenic 15.0%
!! TAAAATGACATTTATGTAAA+AGG + chr5_1:54652008-54652027 None:intergenic 15.0%
!!! TTTTATGTTGTTGTTGTTTA+AGG - chr5_1:54648738-54648757 Msa0737400:intron 20.0%
!!! CTATAAGTTGTTTTTGTATA+AGG - chr5_1:54649012-54649031 Msa0737400:intron 20.0%
!!! TGTTTTTGTATAAGGTATAT+TGG - chr5_1:54649020-54649039 Msa0737400:intron 20.0%
!!! TAAATTTTGTGATACTGTTT+GGG + chr5_1:54649111-54649130 None:intergenic 20.0%
!!! ATAAATTTTGTGATACTGTT+TGG + chr5_1:54649112-54649131 None:intergenic 20.0%
!! AATCTAAATAGTACTACTTA+GGG + chr5_1:54649172-54649191 None:intergenic 20.0%
!! CAATCTAAATAGTATAACTT+AGG + chr5_1:54649270-54649289 None:intergenic 20.0%
!! AATGTATAGTGATTTATGTT+TGG - chr5_1:54649394-54649413 Msa0737400:intron 20.0%
!!! CTTTAAGTTAGAATCAATTT+TGG - chr5_1:54649497-54649516 Msa0737400:intron 20.0%
!! TATAGTCAAACTTACTTATA+GGG + chr5_1:54650107-54650126 None:intergenic 20.0%
!! GTAACTTCTATATAGAAAAA+TGG + chr5_1:54650268-54650287 None:intergenic 20.0%
!! GATATACAATTATATGTTGA+GGG + chr5_1:54650290-54650309 None:intergenic 20.0%
!!! TTAGGTTTTCTTTACAATTT+TGG + chr5_1:54650312-54650331 None:intergenic 20.0%
!! AAACAAAAACTATTTCAAAC+AGG - chr5_1:54650387-54650406 Msa0737400:intron 20.0%
!! ATCTAACAACATAATTAATC+AGG + chr5_1:54650618-54650637 None:intergenic 20.0%
!! ATGAAATATTTGATGCTTTA+AGG - chr5_1:54651334-54651353 Msa0737400:intron 20.0%
!! TGAAATATTTGATGCTTTAA+GGG - chr5_1:54651335-54651354 Msa0737400:intron 20.0%
!!! TACTTTTTTGGAGATTTTTA+AGG - chr5_1:54651411-54651430 Msa0737400:intron 20.0%
!!! AGTTTGTTTACATACATAAA+TGG - chr5_1:54651794-54651813 Msa0737400:intron 20.0%
!!! CATAAATGTCATTTTACATT+AGG - chr5_1:54652012-54652031 Msa0737400:CDS 20.0%
!! TTTGGATCTATATTATTACA+GGG - chr5_1:54652052-54652071 Msa0737400:CDS 20.0%
!! CTTGAATAAAGATAAGAAAT+GGG + chr5_1:54652350-54652369 None:intergenic 20.0%
!! ACTTGAATAAAGATAAGAAA+TGG + chr5_1:54652351-54652370 None:intergenic 20.0%
!!! TTTTATGTTGTTGTTGTTTA+AGG - chr5_1:54648738-54648757 Msa0737400:intron 20.0%
!!! CTATAAGTTGTTTTTGTATA+AGG - chr5_1:54649012-54649031 Msa0737400:intron 20.0%
!!! TGTTTTTGTATAAGGTATAT+TGG - chr5_1:54649020-54649039 Msa0737400:intron 20.0%
!!! TAAATTTTGTGATACTGTTT+GGG + chr5_1:54649111-54649130 None:intergenic 20.0%
!!! ATAAATTTTGTGATACTGTT+TGG + chr5_1:54649112-54649131 None:intergenic 20.0%
!! AATCTAAATAGTACTACTTA+GGG + chr5_1:54649172-54649191 None:intergenic 20.0%
!! CAATCTAAATAGTATAACTT+AGG + chr5_1:54649270-54649289 None:intergenic 20.0%
!! AATGTATAGTGATTTATGTT+TGG - chr5_1:54649394-54649413 Msa0737400:intron 20.0%
!!! CTTTAAGTTAGAATCAATTT+TGG - chr5_1:54649497-54649516 Msa0737400:intron 20.0%
!! TATAGTCAAACTTACTTATA+GGG + chr5_1:54650107-54650126 None:intergenic 20.0%
!! GTAACTTCTATATAGAAAAA+TGG + chr5_1:54650268-54650287 None:intergenic 20.0%
!! GATATACAATTATATGTTGA+GGG + chr5_1:54650290-54650309 None:intergenic 20.0%
!!! TTAGGTTTTCTTTACAATTT+TGG + chr5_1:54650312-54650331 None:intergenic 20.0%
!! AAACAAAAACTATTTCAAAC+AGG - chr5_1:54650387-54650406 Msa0737400:intron 20.0%
!! ATCTAACAACATAATTAATC+AGG + chr5_1:54650618-54650637 None:intergenic 20.0%
!! ATGAAATATTTGATGCTTTA+AGG - chr5_1:54651334-54651353 Msa0737400:intron 20.0%
!! TGAAATATTTGATGCTTTAA+GGG - chr5_1:54651335-54651354 Msa0737400:intron 20.0%
!!! TACTTTTTTGGAGATTTTTA+AGG - chr5_1:54651411-54651430 Msa0737400:intron 20.0%
!!! AGTTTGTTTACATACATAAA+TGG - chr5_1:54651794-54651813 Msa0737400:intron 20.0%
!!! CATAAATGTCATTTTACATT+AGG - chr5_1:54652012-54652031 Msa0737400:CDS 20.0%
!! TTTGGATCTATATTATTACA+GGG - chr5_1:54652052-54652071 Msa0737400:CDS 20.0%
!! CTTGAATAAAGATAAGAAAT+GGG + chr5_1:54652350-54652369 None:intergenic 20.0%
!! ACTTGAATAAAGATAAGAAA+TGG + chr5_1:54652351-54652370 None:intergenic 20.0%
!!! TTTTTTGTTTGTTTTGTGAC+AGG - chr5_1:54648765-54648784 Msa0737400:intron 25.0%
!!! TTTTTGTTTGTTTTGTGACA+GGG - chr5_1:54648766-54648785 Msa0737400:intron 25.0%
! CAATCTAAATAGTACTACTT+AGG + chr5_1:54649173-54649192 None:intergenic 25.0%
!! TTTAGATTGCACATATTTTC+AGG - chr5_1:54649281-54649300 Msa0737400:intron 25.0%
! TGATTATGTGAAACTATTTC+TGG - chr5_1:54649357-54649376 Msa0737400:intron 25.0%
! TAGTGATTTATGTTTGGAAA+CGG - chr5_1:54649400-54649419 Msa0737400:intron 25.0%
!!! AGAATGAATTTTGGAATTTG+CGG + chr5_1:54649549-54649568 None:intergenic 25.0%
!! TAGATGTGTAGAATGAATTT+TGG + chr5_1:54649558-54649577 None:intergenic 25.0%
! TTAACCAAAAAAGATATCCA+AGG + chr5_1:54649815-54649834 None:intergenic 25.0%
! AATAAAATAGTACTCCTCTA+GGG - chr5_1:54649935-54649954 Msa0737400:intron 25.0%
!! ATATCTGAAACTCAAAACAA+AGG + chr5_1:54649970-54649989 None:intergenic 25.0%
! TATTCTTAACTATACAAAGC+AGG - chr5_1:54650014-54650033 Msa0737400:intron 25.0%
! GTATAGTCAAACTTACTTAT+AGG + chr5_1:54650108-54650127 None:intergenic 25.0%
! CTGGTATAGTTAAACTTATA+GGG + chr5_1:54650170-54650189 None:intergenic 25.0%
! TCTGGTATAGTTAAACTTAT+AGG + chr5_1:54650171-54650190 None:intergenic 25.0%
! GGATATACAATTATATGTTG+AGG + chr5_1:54650291-54650310 None:intergenic 25.0%
! TTGTAAAGAAAACCTAAAAC+AGG - chr5_1:54650315-54650334 Msa0737400:intron 25.0%
! AAAAAAGTCATACAGACTAA+GGG + chr5_1:54650413-54650432 None:intergenic 25.0%
! AAAAAAAGTCATACAGACTA+AGG + chr5_1:54650414-54650433 None:intergenic 25.0%
! AACTAATTCAGAAACATGTT+AGG + chr5_1:54650468-54650487 None:intergenic 25.0%
! AATTTCTTTATGGAATGTTG+TGG - chr5_1:54650527-54650546 Msa0737400:intron 25.0%
! GGAACATTACAATAATAGAA+AGG + chr5_1:54651103-54651122 None:intergenic 25.0%
! TGAATCAGCAAATACAAAAA+TGG + chr5_1:54651124-54651143 None:intergenic 25.0%
! CTCGTTTAATAAAGATTGAA+CGG + chr5_1:54651860-54651879 None:intergenic 25.0%
!!! ATTAGGACAAACTTTTAACT+TGG - chr5_1:54652029-54652048 Msa0737400:CDS 25.0%
! GTTTGGATCTATATTATTAC+AGG - chr5_1:54652051-54652070 Msa0737400:CDS 25.0%
! TTGGATCTATATTATTACAG+GGG - chr5_1:54652053-54652072 Msa0737400:CDS 25.0%
!! CTTTTACTTTATGTTTGCAT+TGG - chr5_1:54652312-54652331 Msa0737400:five_prime_UTR 25.0%
!!! TTTTTTGTTTGTTTTGTGAC+AGG - chr5_1:54648765-54648784 Msa0737400:intron 25.0%
!!! TTTTTGTTTGTTTTGTGACA+GGG - chr5_1:54648766-54648785 Msa0737400:intron 25.0%
! CAATCTAAATAGTACTACTT+AGG + chr5_1:54649173-54649192 None:intergenic 25.0%
!! TTTAGATTGCACATATTTTC+AGG - chr5_1:54649281-54649300 Msa0737400:intron 25.0%
! TGATTATGTGAAACTATTTC+TGG - chr5_1:54649357-54649376 Msa0737400:intron 25.0%
! TAGTGATTTATGTTTGGAAA+CGG - chr5_1:54649400-54649419 Msa0737400:intron 25.0%
!!! AGAATGAATTTTGGAATTTG+CGG + chr5_1:54649549-54649568 None:intergenic 25.0%
!! TAGATGTGTAGAATGAATTT+TGG + chr5_1:54649558-54649577 None:intergenic 25.0%
! TTAACCAAAAAAGATATCCA+AGG + chr5_1:54649815-54649834 None:intergenic 25.0%
! AATAAAATAGTACTCCTCTA+GGG - chr5_1:54649935-54649954 Msa0737400:intron 25.0%
!! ATATCTGAAACTCAAAACAA+AGG + chr5_1:54649970-54649989 None:intergenic 25.0%
! TATTCTTAACTATACAAAGC+AGG - chr5_1:54650014-54650033 Msa0737400:intron 25.0%
! GTATAGTCAAACTTACTTAT+AGG + chr5_1:54650108-54650127 None:intergenic 25.0%
! CTGGTATAGTTAAACTTATA+GGG + chr5_1:54650170-54650189 None:intergenic 25.0%
! TCTGGTATAGTTAAACTTAT+AGG + chr5_1:54650171-54650190 None:intergenic 25.0%
! GGATATACAATTATATGTTG+AGG + chr5_1:54650291-54650310 None:intergenic 25.0%
! TTGTAAAGAAAACCTAAAAC+AGG - chr5_1:54650315-54650334 Msa0737400:intron 25.0%
! AAAAAAGTCATACAGACTAA+GGG + chr5_1:54650413-54650432 None:intergenic 25.0%
! AAAAAAAGTCATACAGACTA+AGG + chr5_1:54650414-54650433 None:intergenic 25.0%
! AACTAATTCAGAAACATGTT+AGG + chr5_1:54650468-54650487 None:intergenic 25.0%
! AATTTCTTTATGGAATGTTG+TGG - chr5_1:54650527-54650546 Msa0737400:intron 25.0%
! GGAACATTACAATAATAGAA+AGG + chr5_1:54651103-54651122 None:intergenic 25.0%
! TGAATCAGCAAATACAAAAA+TGG + chr5_1:54651124-54651143 None:intergenic 25.0%
! CTCGTTTAATAAAGATTGAA+CGG + chr5_1:54651860-54651879 None:intergenic 25.0%
!!! ATTAGGACAAACTTTTAACT+TGG - chr5_1:54652029-54652048 Msa0737400:CDS 25.0%
! GTTTGGATCTATATTATTAC+AGG - chr5_1:54652051-54652070 Msa0737400:CDS 25.0%
! TTGGATCTATATTATTACAG+GGG - chr5_1:54652053-54652072 Msa0737400:CDS 25.0%
!! CTTTTACTTTATGTTTGCAT+TGG - chr5_1:54652312-54652331 Msa0737400:five_prime_UTR 25.0%
! AAAGCGTTAAGAAAGAAGAA+GGG + chr5_1:54648393-54648412 None:intergenic 30.0%
AAAAAAAACAGTGTCCAACA+TGG + chr5_1:54648720-54648739 None:intergenic 30.0%
GCTTATTTGAGCTTAATTAC+TGG + chr5_1:54649136-54649155 None:intergenic 30.0%
TCAAATAAGCGATTTCAAAC+TGG - chr5_1:54649146-54649165 Msa0737400:intron 30.0%
! TGAGTTGAATAGTACATTCA+AGG - chr5_1:54649434-54649453 Msa0737400:intron 30.0%
!!! TTTGACAACATTGGTTCTTT+TGG + chr5_1:54649599-54649618 None:intergenic 30.0%
AGAACCAATGTTGTCAAATA+TGG - chr5_1:54649601-54649620 Msa0737400:intron 30.0%
!!! CATTCCTTGGATATCTTTTT+TGG - chr5_1:54649808-54649827 Msa0737400:intron 30.0%
CATCAGTAATGTTACAAACA+GGG + chr5_1:54649893-54649912 None:intergenic 30.0%
ACATCAGTAATGTTACAAAC+AGG + chr5_1:54649894-54649913 None:intergenic 30.0%
GAATAAAATAGTACTCCTCT+AGG - chr5_1:54649934-54649953 Msa0737400:intron 30.0%
! TTGCATTGGTGGTTTATTTA+TGG - chr5_1:54650047-54650066 Msa0737400:intron 30.0%
CTTATAGGGCTATTACATTA+AGG + chr5_1:54650093-54650112 None:intergenic 30.0%
! GGCTATCATATTAAGGATTT+TGG + chr5_1:54650149-54650168 None:intergenic 30.0%
CTTATAGGGCTATCATATTA+AGG + chr5_1:54650156-54650175 None:intergenic 30.0%
CCAAAATAATCGAATAACTC+TGG + chr5_1:54650189-54650208 None:intergenic 30.0%
! CCAGAGTTATTCGATTATTT+TGG - chr5_1:54650186-54650205 Msa0737400:intron 30.0%
GAAAACCTAAAACAGGTAAA+AGG - chr5_1:54650322-54650341 Msa0737400:intron 30.0%
! GTTATCCTTTTACCTGTTTT+AGG + chr5_1:54650330-54650349 None:intergenic 30.0%
!! GTTGATTGATTTGATGATAC+TGG - chr5_1:54650549-54650568 Msa0737400:intron 30.0%
!! ATTGATTTGATGATACTGGT+CGG - chr5_1:54650553-54650572 Msa0737400:intron 30.0%
TTAGAAATTTAGTGAGCTTG+TGG - chr5_1:54650643-54650662 Msa0737400:intron 30.0%
TTGTCAACGTAAAAGAACAA+GGG + chr5_1:54650706-54650725 None:intergenic 30.0%
ACATTAGTGTTGTCAAATAG+CGG - chr5_1:54650750-54650769 Msa0737400:intron 30.0%
!! TATTCTTTCAATGTTTTGGG+CGG - chr5_1:54651049-54651068 Msa0737400:intron 30.0%
TTCAGTTGGTTATCAAGAAA+AGG + chr5_1:54651260-54651279 None:intergenic 30.0%
AATGAGAAGTTGTTCTTAGT+AGG + chr5_1:54651518-54651537 None:intergenic 30.0%
AGAAAAAAGATGTAGCAAAC+AGG - chr5_1:54651629-54651648 Msa0737400:intron 30.0%
TGTTAGTTAAGCACAGTTTA+GGG + chr5_1:54651655-54651674 None:intergenic 30.0%
TTAATAAAGATTGAACGGTC+TGG + chr5_1:54651855-54651874 None:intergenic 30.0%
CGTTCAATCTTTATTAAACG+AGG - chr5_1:54651858-54651877 Msa0737400:intron 30.0%
! TTATTAAACGAGGCACATTT+TGG - chr5_1:54651868-54651887 Msa0737400:intron 30.0%
ATTTAAACCGCCTTATAAGA+GGG + chr5_1:54651936-54651955 None:intergenic 30.0%
!!! TGTTGAATTATTTTGACTGC+CGG - chr5_1:54651972-54651991 Msa0737400:intron 30.0%
!!! GACAAACTTTTAACTTGGTT+TGG - chr5_1:54652034-54652053 Msa0737400:CDS 30.0%
TGGATCTATATTATTACAGG+GGG - chr5_1:54652054-54652073 Msa0737400:CDS 30.0%
! AGTTCACAATTTTGCTTAGT+GGG + chr5_1:54652241-54652260 None:intergenic 30.0%
! ATAAAGATAAGAAATGGGCT+CGG + chr5_1:54652345-54652364 None:intergenic 30.0%
TGACAAATGAATGGAGAATT+TGG - chr5_1:54652380-54652399 Msa0737400:five_prime_UTR 30.0%
! AAAGCGTTAAGAAAGAAGAA+GGG + chr5_1:54648393-54648412 None:intergenic 30.0%
AAAAAAAACAGTGTCCAACA+TGG + chr5_1:54648720-54648739 None:intergenic 30.0%
GCTTATTTGAGCTTAATTAC+TGG + chr5_1:54649136-54649155 None:intergenic 30.0%
TCAAATAAGCGATTTCAAAC+TGG - chr5_1:54649146-54649165 Msa0737400:intron 30.0%
! TGAGTTGAATAGTACATTCA+AGG - chr5_1:54649434-54649453 Msa0737400:intron 30.0%
!!! TTTGACAACATTGGTTCTTT+TGG + chr5_1:54649599-54649618 None:intergenic 30.0%
AGAACCAATGTTGTCAAATA+TGG - chr5_1:54649601-54649620 Msa0737400:intron 30.0%
!!! CATTCCTTGGATATCTTTTT+TGG - chr5_1:54649808-54649827 Msa0737400:intron 30.0%
CATCAGTAATGTTACAAACA+GGG + chr5_1:54649893-54649912 None:intergenic 30.0%
ACATCAGTAATGTTACAAAC+AGG + chr5_1:54649894-54649913 None:intergenic 30.0%
GAATAAAATAGTACTCCTCT+AGG - chr5_1:54649934-54649953 Msa0737400:intron 30.0%
! TTGCATTGGTGGTTTATTTA+TGG - chr5_1:54650047-54650066 Msa0737400:intron 30.0%
CTTATAGGGCTATTACATTA+AGG + chr5_1:54650093-54650112 None:intergenic 30.0%
! GGCTATCATATTAAGGATTT+TGG + chr5_1:54650149-54650168 None:intergenic 30.0%
CTTATAGGGCTATCATATTA+AGG + chr5_1:54650156-54650175 None:intergenic 30.0%
CCAAAATAATCGAATAACTC+TGG + chr5_1:54650189-54650208 None:intergenic 30.0%
! CCAGAGTTATTCGATTATTT+TGG - chr5_1:54650186-54650205 Msa0737400:intron 30.0%
GAAAACCTAAAACAGGTAAA+AGG - chr5_1:54650322-54650341 Msa0737400:intron 30.0%
! GTTATCCTTTTACCTGTTTT+AGG + chr5_1:54650330-54650349 None:intergenic 30.0%
!! GTTGATTGATTTGATGATAC+TGG - chr5_1:54650549-54650568 Msa0737400:intron 30.0%
!! ATTGATTTGATGATACTGGT+CGG - chr5_1:54650553-54650572 Msa0737400:intron 30.0%
TTAGAAATTTAGTGAGCTTG+TGG - chr5_1:54650643-54650662 Msa0737400:intron 30.0%
TTGTCAACGTAAAAGAACAA+GGG + chr5_1:54650706-54650725 None:intergenic 30.0%
ACATTAGTGTTGTCAAATAG+CGG - chr5_1:54650750-54650769 Msa0737400:intron 30.0%
!! TATTCTTTCAATGTTTTGGG+CGG - chr5_1:54651049-54651068 Msa0737400:intron 30.0%
TTCAGTTGGTTATCAAGAAA+AGG + chr5_1:54651260-54651279 None:intergenic 30.0%
AATGAGAAGTTGTTCTTAGT+AGG + chr5_1:54651518-54651537 None:intergenic 30.0%
AGAAAAAAGATGTAGCAAAC+AGG - chr5_1:54651629-54651648 Msa0737400:intron 30.0%
TGTTAGTTAAGCACAGTTTA+GGG + chr5_1:54651655-54651674 None:intergenic 30.0%
TTAATAAAGATTGAACGGTC+TGG + chr5_1:54651855-54651874 None:intergenic 30.0%
CGTTCAATCTTTATTAAACG+AGG - chr5_1:54651858-54651877 Msa0737400:intron 30.0%
! TTATTAAACGAGGCACATTT+TGG - chr5_1:54651868-54651887 Msa0737400:intron 30.0%
ATTTAAACCGCCTTATAAGA+GGG + chr5_1:54651936-54651955 None:intergenic 30.0%
!!! TGTTGAATTATTTTGACTGC+CGG - chr5_1:54651972-54651991 Msa0737400:intron 30.0%
!!! GACAAACTTTTAACTTGGTT+TGG - chr5_1:54652034-54652053 Msa0737400:CDS 30.0%
TGGATCTATATTATTACAGG+GGG - chr5_1:54652054-54652073 Msa0737400:CDS 30.0%
! AGTTCACAATTTTGCTTAGT+GGG + chr5_1:54652241-54652260 None:intergenic 30.0%
! ATAAAGATAAGAAATGGGCT+CGG + chr5_1:54652345-54652364 None:intergenic 30.0%
TGACAAATGAATGGAGAATT+TGG - chr5_1:54652380-54652399 Msa0737400:five_prime_UTR 30.0%
GGTTTCTTTCTTGTTCAAGA+GGG + chr5_1:54648325-54648344 None:intergenic 35.0%
!! GAAAGCGTTAAGAAAGAAGA+AGG + chr5_1:54648394-54648413 None:intergenic 35.0%
TTGTTTGGTCATGGTGAAAT+TGG + chr5_1:54648435-54648454 None:intergenic 35.0%
AAATGTGTTATGGCTTCTTC+TGG - chr5_1:54648794-54648813 Msa0737400:intron 35.0%
GTCACAAAACATAAGCAAGT+AGG - chr5_1:54649215-54649234 Msa0737400:intron 35.0%
TCAAATAAGCGATTCCAAAC+AGG - chr5_1:54649243-54649262 Msa0737400:intron 35.0%
!! CACATATTTTCAGGATGACT+TGG - chr5_1:54649290-54649309 Msa0737400:intron 35.0%
ATGGCCATATTTGACAACAT+TGG + chr5_1:54649608-54649627 None:intergenic 35.0%
AATGTTGTCAAATATGGCCA+TGG - chr5_1:54649607-54649626 Msa0737400:intron 35.0%
! ATGACCAATTTTGTGAAGGA+TGG - chr5_1:54649663-54649682 Msa0737400:intron 35.0%
! CAGCCAGTATTTCAGATTTT+TGG - chr5_1:54649708-54649727 Msa0737400:intron 35.0%
! GAGCCAAAAATCTGAAATAC+TGG + chr5_1:54649714-54649733 None:intergenic 35.0%
GGTCATCAACATTGTATGTT+TGG + chr5_1:54649768-54649787 None:intergenic 35.0%
TTTGGTTAAGTTCGTGAGTT+AGG - chr5_1:54649826-54649845 Msa0737400:intron 35.0%
AAAGGAACATTTAACCCTAG+AGG + chr5_1:54649952-54649971 None:intergenic 35.0%
!! CAGGTGTTGAATATTTGCAT+TGG - chr5_1:54650033-54650052 Msa0737400:intron 35.0%
GTGTTGAATATTTGCATTGG+TGG - chr5_1:54650036-54650055 Msa0737400:intron 35.0%
GGTTTATTTATGGACTCTCA+TGG - chr5_1:54650057-54650076 Msa0737400:intron 35.0%
TAGAAAAATGGCGAAGAGTT+TGG + chr5_1:54650256-54650275 None:intergenic 35.0%
AGGATAACTATTGTGAGAAG+AGG - chr5_1:54650342-54650361 Msa0737400:intron 35.0%
AAATTATTCTAGCCCTTCTG+TGG - chr5_1:54650678-54650697 Msa0737400:intron 35.0%
GTTGTCAACGTAAAAGAACA+AGG + chr5_1:54650707-54650726 None:intergenic 35.0%
TTGACAACAAATTGAAGCAC+TGG - chr5_1:54650719-54650738 Msa0737400:intron 35.0%
GTCACTATTTGACAGCAATT+TGG + chr5_1:54650829-54650848 None:intergenic 35.0%
!! TTTCCTAATTCAGGTTGAAG+TGG + chr5_1:54651152-54651171 None:intergenic 35.0%
ACTTCAACCTGAATTAGGAA+AGG - chr5_1:54651151-54651170 Msa0737400:intron 35.0%
CTTCAACCTGAATTAGGAAA+GGG - chr5_1:54651152-54651171 Msa0737400:intron 35.0%
TTCAACCTGAATTAGGAAAG+GGG - chr5_1:54651153-54651172 Msa0737400:intron 35.0%
! AAGAAAAGGCATAATGAGTG+TGG + chr5_1:54651246-54651265 None:intergenic 35.0%
GTGTTAGTTAAGCACAGTTT+AGG + chr5_1:54651656-54651675 None:intergenic 35.0%
TGAAACAGAAGCAGTTGATT+TGG - chr5_1:54651724-54651743 Msa0737400:intron 35.0%
GTACTTCGACTTTGCAAAAT+AGG + chr5_1:54651909-54651928 None:intergenic 35.0%
GATTTAAACCGCCTTATAAG+AGG + chr5_1:54651937-54651956 None:intergenic 35.0%
! TGTAAAAGGGCACAAATTTC+CGG + chr5_1:54651994-54652013 None:intergenic 35.0%
TGGTATTCATCGTGAATTCA+TGG - chr5_1:54652108-54652127 Msa0737400:CDS 35.0%
!! AAAAGCATCAGTCTTTCCTT+AGG + chr5_1:54652135-54652154 None:intergenic 35.0%
ATACTCCGAAATTCTGAATG+TGG - chr5_1:54652203-54652222 Msa0737400:intron 35.0%
CTAGACCACATTCAGAATTT+CGG + chr5_1:54652211-54652230 None:intergenic 35.0%
! CAGTTCACAATTTTGCTTAG+TGG + chr5_1:54652242-54652261 None:intergenic 35.0%
! CTATTGCGTTGACAAATGAA+TGG - chr5_1:54652371-54652390 Msa0737400:five_prime_UTR 35.0%
GGTTTCTTTCTTGTTCAAGA+GGG + chr5_1:54648325-54648344 None:intergenic 35.0%
!! GAAAGCGTTAAGAAAGAAGA+AGG + chr5_1:54648394-54648413 None:intergenic 35.0%
TTGTTTGGTCATGGTGAAAT+TGG + chr5_1:54648435-54648454 None:intergenic 35.0%
AAATGTGTTATGGCTTCTTC+TGG - chr5_1:54648794-54648813 Msa0737400:intron 35.0%
GTCACAAAACATAAGCAAGT+AGG - chr5_1:54649215-54649234 Msa0737400:intron 35.0%
TCAAATAAGCGATTCCAAAC+AGG - chr5_1:54649243-54649262 Msa0737400:intron 35.0%
!! CACATATTTTCAGGATGACT+TGG - chr5_1:54649290-54649309 Msa0737400:intron 35.0%
ATGGCCATATTTGACAACAT+TGG + chr5_1:54649608-54649627 None:intergenic 35.0%
AATGTTGTCAAATATGGCCA+TGG - chr5_1:54649607-54649626 Msa0737400:intron 35.0%
! ATGACCAATTTTGTGAAGGA+TGG - chr5_1:54649663-54649682 Msa0737400:intron 35.0%
! CAGCCAGTATTTCAGATTTT+TGG - chr5_1:54649708-54649727 Msa0737400:intron 35.0%
! GAGCCAAAAATCTGAAATAC+TGG + chr5_1:54649714-54649733 None:intergenic 35.0%
GGTCATCAACATTGTATGTT+TGG + chr5_1:54649768-54649787 None:intergenic 35.0%
TTTGGTTAAGTTCGTGAGTT+AGG - chr5_1:54649826-54649845 Msa0737400:intron 35.0%
AAAGGAACATTTAACCCTAG+AGG + chr5_1:54649952-54649971 None:intergenic 35.0%
!! CAGGTGTTGAATATTTGCAT+TGG - chr5_1:54650033-54650052 Msa0737400:intron 35.0%
GTGTTGAATATTTGCATTGG+TGG - chr5_1:54650036-54650055 Msa0737400:intron 35.0%
GGTTTATTTATGGACTCTCA+TGG - chr5_1:54650057-54650076 Msa0737400:intron 35.0%
TAGAAAAATGGCGAAGAGTT+TGG + chr5_1:54650256-54650275 None:intergenic 35.0%
AGGATAACTATTGTGAGAAG+AGG - chr5_1:54650342-54650361 Msa0737400:intron 35.0%
AAATTATTCTAGCCCTTCTG+TGG - chr5_1:54650678-54650697 Msa0737400:intron 35.0%
GTTGTCAACGTAAAAGAACA+AGG + chr5_1:54650707-54650726 None:intergenic 35.0%
TTGACAACAAATTGAAGCAC+TGG - chr5_1:54650719-54650738 Msa0737400:intron 35.0%
GTCACTATTTGACAGCAATT+TGG + chr5_1:54650829-54650848 None:intergenic 35.0%
!! TTTCCTAATTCAGGTTGAAG+TGG + chr5_1:54651152-54651171 None:intergenic 35.0%
ACTTCAACCTGAATTAGGAA+AGG - chr5_1:54651151-54651170 Msa0737400:intron 35.0%
CTTCAACCTGAATTAGGAAA+GGG - chr5_1:54651152-54651171 Msa0737400:intron 35.0%
TTCAACCTGAATTAGGAAAG+GGG - chr5_1:54651153-54651172 Msa0737400:intron 35.0%
! AAGAAAAGGCATAATGAGTG+TGG + chr5_1:54651246-54651265 None:intergenic 35.0%
GTGTTAGTTAAGCACAGTTT+AGG + chr5_1:54651656-54651675 None:intergenic 35.0%
TGAAACAGAAGCAGTTGATT+TGG - chr5_1:54651724-54651743 Msa0737400:intron 35.0%
GTACTTCGACTTTGCAAAAT+AGG + chr5_1:54651909-54651928 None:intergenic 35.0%
GATTTAAACCGCCTTATAAG+AGG + chr5_1:54651937-54651956 None:intergenic 35.0%
! TGTAAAAGGGCACAAATTTC+CGG + chr5_1:54651994-54652013 None:intergenic 35.0%
TGGTATTCATCGTGAATTCA+TGG - chr5_1:54652108-54652127 Msa0737400:CDS 35.0%
!! AAAAGCATCAGTCTTTCCTT+AGG + chr5_1:54652135-54652154 None:intergenic 35.0%
ATACTCCGAAATTCTGAATG+TGG - chr5_1:54652203-54652222 Msa0737400:intron 35.0%
CTAGACCACATTCAGAATTT+CGG + chr5_1:54652211-54652230 None:intergenic 35.0%
! CAGTTCACAATTTTGCTTAG+TGG + chr5_1:54652242-54652261 None:intergenic 35.0%
! CTATTGCGTTGACAAATGAA+TGG - chr5_1:54652371-54652390 Msa0737400:five_prime_UTR 35.0%
GGGTTTCTTTCTTGTTCAAG+AGG + chr5_1:54648326-54648345 None:intergenic 40.0%
!! ATTAGCGTGTTGTTTGGTCA+TGG + chr5_1:54648444-54648463 None:intergenic 40.0%
TGACCAAACAACACGCTAAT+TGG - chr5_1:54648444-54648463 Msa0737400:three_prime_UTR 40.0%
! AGACCAATTAGCGTGTTGTT+TGG + chr5_1:54648450-54648469 None:intergenic 40.0%
TGGTCTCCATATGACAACAA+TGG - chr5_1:54648464-54648483 Msa0737400:three_prime_UTR 40.0%
TCTCCATATGACAACAATGG+AGG - chr5_1:54648467-54648486 Msa0737400:three_prime_UTR 40.0%
CTCCATATGACAACAATGGA+GGG - chr5_1:54648468-54648487 Msa0737400:three_prime_UTR 40.0%
TACCCTCCATTGTTGTCATA+TGG + chr5_1:54648473-54648492 None:intergenic 40.0%
ATATGACAACAATGGAGGGT+AGG - chr5_1:54648472-54648491 Msa0737400:three_prime_UTR 40.0%
AGATCTTGTGTTGCAATTGC+TGG - chr5_1:54648578-54648597 Msa0737400:CDS 40.0%
!!! TTTTGGAGTAATCACGAGTG+AGG + chr5_1:54648658-54648677 None:intergenic 40.0%
! AGCGTACAAGTGTGAGATTT+TGG + chr5_1:54648675-54648694 None:intergenic 40.0%
!! TGGTTTTCAAGCTGATGTCA+AGG - chr5_1:54648814-54648833 Msa0737400:intron 40.0%
AGTATAACTTAGGGCCTGTT+TGG + chr5_1:54649260-54649279 None:intergenic 40.0%
AATATGGCCATGGAGGATAT+AGG - chr5_1:54649617-54649636 Msa0737400:intron 40.0%
! TGCGATGACCAATTTTGTGA+AGG - chr5_1:54649659-54649678 Msa0737400:intron 40.0%
! GTTTGGTTCAATGTCGTCAA+TGG + chr5_1:54649751-54649770 None:intergenic 40.0%
AAGGAGTCATCAACATTCCT+TGG - chr5_1:54649795-54649814 Msa0737400:intron 40.0%
GTTAAGTTCGTGAGTTAGGA+AGG - chr5_1:54649830-54649849 Msa0737400:intron 40.0%
GTTAGGAAGGAAACTTTGCT+AGG - chr5_1:54649843-54649862 Msa0737400:intron 40.0%
GCTATAACACTGTAGCATAG+CGG - chr5_1:54650858-54650877 Msa0737400:intron 40.0%
TCGCAGATTGCAGAAAATAG+CGG + chr5_1:54650896-54650915 None:intergenic 40.0%
AAAGTAACTGAGCCATTGCA+GGG + chr5_1:54650994-54651013 None:intergenic 40.0%
CTTCCACTTCAACCTGAATT+AGG - chr5_1:54651146-54651165 Msa0737400:intron 40.0%
TAGTGTGAATGCATGATGAC+AGG + chr5_1:54651824-54651843 None:intergenic 40.0%
AAGTACGAGTCCCTCTTATA+AGG - chr5_1:54651923-54651942 Msa0737400:intron 40.0%
ATTGTCATCCTAAATGCCAG+TGG - chr5_1:54652088-54652107 Msa0737400:CDS 40.0%
GATGAATACCACTGGCATTT+AGG + chr5_1:54652099-54652118 None:intergenic 40.0%
GAATTCACGATGAATACCAC+TGG + chr5_1:54652107-54652126 None:intergenic 40.0%
ATCGTGAATTCATGGACCTA+AGG - chr5_1:54652116-54652135 Msa0737400:CDS 40.0%
CGAAATTCTGAATGTGGTCT+AGG - chr5_1:54652209-54652228 Msa0737400:intron 40.0%
GGGTTTCTTTCTTGTTCAAG+AGG + chr5_1:54648326-54648345 None:intergenic 40.0%
!! ATTAGCGTGTTGTTTGGTCA+TGG + chr5_1:54648444-54648463 None:intergenic 40.0%
TGACCAAACAACACGCTAAT+TGG - chr5_1:54648444-54648463 Msa0737400:three_prime_UTR 40.0%
! AGACCAATTAGCGTGTTGTT+TGG + chr5_1:54648450-54648469 None:intergenic 40.0%
TGGTCTCCATATGACAACAA+TGG - chr5_1:54648464-54648483 Msa0737400:three_prime_UTR 40.0%
TCTCCATATGACAACAATGG+AGG - chr5_1:54648467-54648486 Msa0737400:three_prime_UTR 40.0%
CTCCATATGACAACAATGGA+GGG - chr5_1:54648468-54648487 Msa0737400:three_prime_UTR 40.0%
TACCCTCCATTGTTGTCATA+TGG + chr5_1:54648473-54648492 None:intergenic 40.0%
ATATGACAACAATGGAGGGT+AGG - chr5_1:54648472-54648491 Msa0737400:three_prime_UTR 40.0%
AGATCTTGTGTTGCAATTGC+TGG - chr5_1:54648578-54648597 Msa0737400:CDS 40.0%
!!! TTTTGGAGTAATCACGAGTG+AGG + chr5_1:54648658-54648677 None:intergenic 40.0%
! AGCGTACAAGTGTGAGATTT+TGG + chr5_1:54648675-54648694 None:intergenic 40.0%
!! TGGTTTTCAAGCTGATGTCA+AGG - chr5_1:54648814-54648833 Msa0737400:intron 40.0%
AGTATAACTTAGGGCCTGTT+TGG + chr5_1:54649260-54649279 None:intergenic 40.0%
AATATGGCCATGGAGGATAT+AGG - chr5_1:54649617-54649636 Msa0737400:intron 40.0%
! TGCGATGACCAATTTTGTGA+AGG - chr5_1:54649659-54649678 Msa0737400:intron 40.0%
! GTTTGGTTCAATGTCGTCAA+TGG + chr5_1:54649751-54649770 None:intergenic 40.0%
AAGGAGTCATCAACATTCCT+TGG - chr5_1:54649795-54649814 Msa0737400:intron 40.0%
GTTAAGTTCGTGAGTTAGGA+AGG - chr5_1:54649830-54649849 Msa0737400:intron 40.0%
GTTAGGAAGGAAACTTTGCT+AGG - chr5_1:54649843-54649862 Msa0737400:intron 40.0%
GCTATAACACTGTAGCATAG+CGG - chr5_1:54650858-54650877 Msa0737400:intron 40.0%
TCGCAGATTGCAGAAAATAG+CGG + chr5_1:54650896-54650915 None:intergenic 40.0%
AAAGTAACTGAGCCATTGCA+GGG + chr5_1:54650994-54651013 None:intergenic 40.0%
CTTCCACTTCAACCTGAATT+AGG - chr5_1:54651146-54651165 Msa0737400:intron 40.0%
TAGTGTGAATGCATGATGAC+AGG + chr5_1:54651824-54651843 None:intergenic 40.0%
AAGTACGAGTCCCTCTTATA+AGG - chr5_1:54651923-54651942 Msa0737400:intron 40.0%
ATTGTCATCCTAAATGCCAG+TGG - chr5_1:54652088-54652107 Msa0737400:CDS 40.0%
GATGAATACCACTGGCATTT+AGG + chr5_1:54652099-54652118 None:intergenic 40.0%
GAATTCACGATGAATACCAC+TGG + chr5_1:54652107-54652126 None:intergenic 40.0%
ATCGTGAATTCATGGACCTA+AGG - chr5_1:54652116-54652135 Msa0737400:CDS 40.0%
CGAAATTCTGAATGTGGTCT+AGG - chr5_1:54652209-54652228 Msa0737400:intron 40.0%
ACGAGTGAGGATGTTGTAAC+CGG + chr5_1:54648645-54648664 None:intergenic 45.0%
AGTGTCCAACATGGCTTACT+CGG + chr5_1:54648711-54648730 None:intergenic 45.0%
CAGGGCTGAGAAATGTGTTA+TGG - chr5_1:54648784-54648803 Msa0737400:intron 45.0%
TGATGTCAAGGCTTTGCAGA+AGG - chr5_1:54648826-54648845 Msa0737400:intron 45.0%
!! TGCAGAAGGTTTTGTCTGCT+AGG - chr5_1:54648840-54648859 Msa0737400:intron 45.0%
!! GGTTTTGTCTGCTAGGCATT+TGG - chr5_1:54648847-54648866 Msa0737400:intron 45.0%
!! AGGATGACTTGGTGTGAGTT+TGG - chr5_1:54649301-54649320 Msa0737400:intron 45.0%
GTTGTCAAATATGGCCATGG+AGG - chr5_1:54649610-54649629 Msa0737400:intron 45.0%
TGGTTCAATGTCGTCAATGG+CGG + chr5_1:54649748-54649767 None:intergenic 45.0%
!! ATACAATGTTGATGACCGCG+TGG - chr5_1:54649771-54649790 Msa0737400:intron 45.0%
GAAAGTAACTGAGCCATTGC+AGG + chr5_1:54650995-54651014 None:intergenic 45.0%
ACACACCCCTTTCCTAATTC+AGG + chr5_1:54651161-54651180 None:intergenic 45.0%
GTCTTCACTTATGACGCTGT+TGG - chr5_1:54651179-54651198 Msa0737400:intron 45.0%
!! ACGCTGTTGGTTCCTATGAA+AGG - chr5_1:54651192-54651211 Msa0737400:intron 45.0%
!! CGCTGTTGGTTCCTATGAAA+GGG - chr5_1:54651193-54651212 Msa0737400:intron 45.0%
!! TGTTGGTTCCTATGAAAGGG+TGG - chr5_1:54651196-54651215 Msa0737400:intron 45.0%
! GTTGGTTCCTATGAAAGGGT+GGG - chr5_1:54651197-54651216 Msa0737400:intron 45.0%
GCTATATCCCACCCTTTCAT+AGG + chr5_1:54651207-54651226 None:intergenic 45.0%
GGATATAGCTCTCAAGGTTC+TGG - chr5_1:54651218-54651237 Msa0737400:intron 45.0%
ACTGCTTCTGTTTCAGACAG+TGG + chr5_1:54651719-54651738 None:intergenic 45.0%
TACGAGTCCCTCTTATAAGG+CGG - chr5_1:54651926-54651945 Msa0737400:intron 45.0%
ACGAGTGAGGATGTTGTAAC+CGG + chr5_1:54648645-54648664 None:intergenic 45.0%
AGTGTCCAACATGGCTTACT+CGG + chr5_1:54648711-54648730 None:intergenic 45.0%
CAGGGCTGAGAAATGTGTTA+TGG - chr5_1:54648784-54648803 Msa0737400:intron 45.0%
TGATGTCAAGGCTTTGCAGA+AGG - chr5_1:54648826-54648845 Msa0737400:intron 45.0%
!! TGCAGAAGGTTTTGTCTGCT+AGG - chr5_1:54648840-54648859 Msa0737400:intron 45.0%
!! GGTTTTGTCTGCTAGGCATT+TGG - chr5_1:54648847-54648866 Msa0737400:intron 45.0%
!! AGGATGACTTGGTGTGAGTT+TGG - chr5_1:54649301-54649320 Msa0737400:intron 45.0%
GTTGTCAAATATGGCCATGG+AGG - chr5_1:54649610-54649629 Msa0737400:intron 45.0%
TGGTTCAATGTCGTCAATGG+CGG + chr5_1:54649748-54649767 None:intergenic 45.0%
!! ATACAATGTTGATGACCGCG+TGG - chr5_1:54649771-54649790 Msa0737400:intron 45.0%
GAAAGTAACTGAGCCATTGC+AGG + chr5_1:54650995-54651014 None:intergenic 45.0%
ACACACCCCTTTCCTAATTC+AGG + chr5_1:54651161-54651180 None:intergenic 45.0%
GTCTTCACTTATGACGCTGT+TGG - chr5_1:54651179-54651198 Msa0737400:intron 45.0%
!! ACGCTGTTGGTTCCTATGAA+AGG - chr5_1:54651192-54651211 Msa0737400:intron 45.0%
!! CGCTGTTGGTTCCTATGAAA+GGG - chr5_1:54651193-54651212 Msa0737400:intron 45.0%
!! TGTTGGTTCCTATGAAAGGG+TGG - chr5_1:54651196-54651215 Msa0737400:intron 45.0%
! GTTGGTTCCTATGAAAGGGT+GGG - chr5_1:54651197-54651216 Msa0737400:intron 45.0%
GCTATATCCCACCCTTTCAT+AGG + chr5_1:54651207-54651226 None:intergenic 45.0%
GGATATAGCTCTCAAGGTTC+TGG - chr5_1:54651218-54651237 Msa0737400:intron 45.0%
ACTGCTTCTGTTTCAGACAG+TGG + chr5_1:54651719-54651738 None:intergenic 45.0%
TACGAGTCCCTCTTATAAGG+CGG - chr5_1:54651926-54651945 Msa0737400:intron 45.0%
!! AGAAGAAGGGTGTCGTGAAG+AGG + chr5_1:54648380-54648399 None:intergenic 50.0%
CGCGGCGATAACACAGTAAT+CGG + chr5_1:54648606-54648625 None:intergenic 50.0%
CGATTACTGTGTTATCGCCG+CGG - chr5_1:54648604-54648623 Msa0737400:CDS 50.0%
CTCATCCGAGTAAGCCATGT+TGG - chr5_1:54648703-54648722 Msa0737400:intron 50.0%
ATGGCCATGGAGGATATAGG+TGG - chr5_1:54649620-54649639 Msa0737400:intron 50.0%
CGCGCCATCCTTCACAAAAT+TGG + chr5_1:54649670-54649689 None:intergenic 50.0%
TGGCTGACATATCACGTCGT+GGG + chr5_1:54649694-54649713 None:intergenic 50.0%
AGAACAAGGGAGCCACAGAA+GGG + chr5_1:54650693-54650712 None:intergenic 50.0%
AAGAACAAGGGAGCCACAGA+AGG + chr5_1:54650694-54650713 None:intergenic 50.0%
ATAGTGCACCTTCACTGTCG+AGG + chr5_1:54651075-54651094 None:intergenic 50.0%
AGGGTGGGATATAGCTCTCA+AGG - chr5_1:54651212-54651231 Msa0737400:intron 50.0%
ACTTCACCTGTGCAGGTAAG+AGG + chr5_1:54651298-54651317 None:intergenic 50.0%
TTCACGAACTTCACCTGTGC+AGG + chr5_1:54651305-54651324 None:intergenic 50.0%
!! AGAAGAAGGGTGTCGTGAAG+AGG + chr5_1:54648380-54648399 None:intergenic 50.0%
CGCGGCGATAACACAGTAAT+CGG + chr5_1:54648606-54648625 None:intergenic 50.0%
CGATTACTGTGTTATCGCCG+CGG - chr5_1:54648604-54648623 Msa0737400:CDS 50.0%
CTCATCCGAGTAAGCCATGT+TGG - chr5_1:54648703-54648722 Msa0737400:intron 50.0%
ATGGCCATGGAGGATATAGG+TGG - chr5_1:54649620-54649639 Msa0737400:intron 50.0%
CGCGCCATCCTTCACAAAAT+TGG + chr5_1:54649670-54649689 None:intergenic 50.0%
TGGCTGACATATCACGTCGT+GGG + chr5_1:54649694-54649713 None:intergenic 50.0%
AGAACAAGGGAGCCACAGAA+GGG + chr5_1:54650693-54650712 None:intergenic 50.0%
AAGAACAAGGGAGCCACAGA+AGG + chr5_1:54650694-54650713 None:intergenic 50.0%
ATAGTGCACCTTCACTGTCG+AGG + chr5_1:54651075-54651094 None:intergenic 50.0%
AGGGTGGGATATAGCTCTCA+AGG - chr5_1:54651212-54651231 Msa0737400:intron 50.0%
ACTTCACCTGTGCAGGTAAG+AGG + chr5_1:54651298-54651317 None:intergenic 50.0%
TTCACGAACTTCACCTGTGC+AGG + chr5_1:54651305-54651324 None:intergenic 50.0%
GGTAGACATCCTCGTATCCG+CGG + chr5_1:54648624-54648643 None:intergenic 55.0%
GCGGATACGAGGATGTCTAC+CGG - chr5_1:54648623-54648642 Msa0737400:CDS 55.0%
GCCATGGAGGATATAGGTGG+CGG - chr5_1:54649623-54649642 Msa0737400:intron 55.0%
CCATGGAGGATATAGGTGGC+GGG - chr5_1:54649624-54649643 Msa0737400:intron 55.0%
CTGGCTGACATATCACGTCG+TGG + chr5_1:54649695-54649714 None:intergenic 55.0%
!! ATGTCGTCAATGGCGGACAG+TGG + chr5_1:54649741-54649760 None:intergenic 55.0%
!! ATGTTGATGACCGCGTGGCA+AGG - chr5_1:54649776-54649795 Msa0737400:intron 55.0%
!! GTTGATGACTCCTTGCCACG+CGG + chr5_1:54649789-54649808 None:intergenic 55.0%
GCAAATGAGCTGCCCTGCAA+TGG - chr5_1:54650979-54650998 Msa0737400:intron 55.0%
CCTGTGCAGGTAAGAGGAGT+GGG + chr5_1:54651292-54651311 None:intergenic 55.0%
ACCTGTGCAGGTAAGAGGAG+TGG + chr5_1:54651293-54651312 None:intergenic 55.0%
GGTAGACATCCTCGTATCCG+CGG + chr5_1:54648624-54648643 None:intergenic 55.0%
GCGGATACGAGGATGTCTAC+CGG - chr5_1:54648623-54648642 Msa0737400:CDS 55.0%
GCCATGGAGGATATAGGTGG+CGG - chr5_1:54649623-54649642 Msa0737400:intron 55.0%
CCATGGAGGATATAGGTGGC+GGG - chr5_1:54649624-54649643 Msa0737400:intron 55.0%
CTGGCTGACATATCACGTCG+TGG + chr5_1:54649695-54649714 None:intergenic 55.0%
!! ATGTCGTCAATGGCGGACAG+TGG + chr5_1:54649741-54649760 None:intergenic 55.0%
!! ATGTTGATGACCGCGTGGCA+AGG - chr5_1:54649776-54649795 Msa0737400:intron 55.0%
!! GTTGATGACTCCTTGCCACG+CGG + chr5_1:54649789-54649808 None:intergenic 55.0%
GCAAATGAGCTGCCCTGCAA+TGG - chr5_1:54650979-54650998 Msa0737400:intron 55.0%
CCTGTGCAGGTAAGAGGAGT+GGG + chr5_1:54651292-54651311 None:intergenic 55.0%
ACCTGTGCAGGTAAGAGGAG+TGG + chr5_1:54651293-54651312 None:intergenic 55.0%
GTGTTATCGCCGCGGATACG+AGG - chr5_1:54648612-54648631 Msa0737400:CDS 60.0%
CCCGCCACCTATATCCTCCA+TGG + chr5_1:54649627-54649646 None:intergenic 60.0%
!! TCGTCAATGGCGGACAGTGG+CGG + chr5_1:54649738-54649757 None:intergenic 60.0%
!! GTGGGCTGGGAGACTTCAGT+TGG + chr5_1:54651274-54651293 None:intergenic 60.0%
! GCAGGTAAGAGGAGTGGGCT+GGG + chr5_1:54651287-54651306 None:intergenic 60.0%
TGCAGGTAAGAGGAGTGGGC+TGG + chr5_1:54651288-54651307 None:intergenic 60.0%
CCCACTCCTCTTACCTGCAC+AGG - chr5_1:54651289-54651308 Msa0737400:intron 60.0%
GTGTTATCGCCGCGGATACG+AGG - chr5_1:54648612-54648631 Msa0737400:CDS 60.0%
CCCGCCACCTATATCCTCCA+TGG + chr5_1:54649627-54649646 None:intergenic 60.0%
!! TCGTCAATGGCGGACAGTGG+CGG + chr5_1:54649738-54649757 None:intergenic 60.0%
!! GTGGGCTGGGAGACTTCAGT+TGG + chr5_1:54651274-54651293 None:intergenic 60.0%
! GCAGGTAAGAGGAGTGGGCT+GGG + chr5_1:54651287-54651306 None:intergenic 60.0%
TGCAGGTAAGAGGAGTGGGC+TGG + chr5_1:54651288-54651307 None:intergenic 60.0%
CCCACTCCTCTTACCTGCAC+AGG - chr5_1:54651289-54651308 Msa0737400:intron 60.0%
TTGGGCGGCCTCGACAGTGA+AGG - chr5_1:54651064-54651083 Msa0737400:intron 65.0%
TTGGGCGGCCTCGACAGTGA+AGG - chr5_1:54651064-54651083 Msa0737400:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 54648307 54652413 54648307 ID=Msa0737400;Name=Msa0737400
chr5_1 mRNA 54648307 54652413 54648307 ID=Msa0737400-mRNA-1;Parent=Msa0737400;Name=Msa0737400-mRNA-1;_AED=0.22;_eAED=0.22;_QI=136|0.66|0.75|1|1|1|4|266|104
chr5_1 exon 54648307 54648647 54648307 ID=Msa0737400-mRNA-1:exon:15339;Parent=Msa0737400-mRNA-1
chr5_1 exon 54651873 54651933 54651873 ID=Msa0737400-mRNA-1:exon:15338;Parent=Msa0737400-mRNA-1
chr5_1 exon 54652009 54652140 54652009 ID=Msa0737400-mRNA-1:exon:15337;Parent=Msa0737400-mRNA-1
chr5_1 exon 54652231 54652413 54652231 ID=Msa0737400-mRNA-1:exon:15336;Parent=Msa0737400-mRNA-1
chr5_1 five_prime_UTR 54652278 54652413 54652278 ID=Msa0737400-mRNA-1:five_prime_utr;Parent=Msa0737400-mRNA-1
chr5_1 CDS 54652231 54652277 54652231 ID=Msa0737400-mRNA-1:cds;Parent=Msa0737400-mRNA-1
chr5_1 CDS 54652009 54652140 54652009 ID=Msa0737400-mRNA-1:cds;Parent=Msa0737400-mRNA-1
chr5_1 CDS 54651873 54651933 54651873 ID=Msa0737400-mRNA-1:cds;Parent=Msa0737400-mRNA-1
chr5_1 CDS 54648573 54648647 54648573 ID=Msa0737400-mRNA-1:cds;Parent=Msa0737400-mRNA-1
chr5_1 three_prime_UTR 54648307 54648572 54648307 ID=Msa0737400-mRNA-1:three_prime_utr;Parent=Msa0737400-mRNA-1
Gene Sequence

>Msa0737400

ATGACCAAACAACACGCTAATTGGTCTCCATATGACAACAATGGAGGATCTTGTGTTGCAATTGCTGGATCCGATTACTGTGTTATCGCCGCGGATACGAGGATGTCTACCGGTTACAACATCCTCACTCGTGATTACTCCAAAATCTCACACTTGTACGCTATTTATTTCTCATCCGAGGCTGAGAAATGTGTTATGGCTTCTTCTGGTTTTCAAGCTGATGTCAAGGCTTTGCAGAAGGGGGATAAAGTTGAAATTGTCATCCTAAATGCCAGTGGTATTCATCGTGAATTCATGGACCTAAGGAAAGACTGA
Protein sequence

>Msa0737400

MTKQHANWSPYDNNGGSCVAIAGSDYCVIAADTRMSTGYNILTRDYSKISHLYAIYFSSEAEKCVMASSGFQADVKALQKGDKVEIVILNASGIHREFMDLRKD*