AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0798810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0798810 MtrunA17_Chr5g0403591 100.000 183 0 0 1 183 1 183 2.40e-138 383
Msa0798810 MtrunA17_Chr4g0037011 38.971 136 80 2 33 166 5 139 1.82e-28 103
Msa0798810 MtrunA17_Chr1g0154011 36.765 136 83 2 33 166 5 139 4.06e-27 100
Msa0798810 MtrunA17_Chr5g0432831 36.765 136 83 2 33 166 5 139 2.48e-26 98.2
Msa0798810 MtrunA17_Chr3g0108261 36.765 136 83 2 33 166 5 139 2.64e-26 98.2
Msa0798810 MtrunA17_Chr7g0275361 36.029 136 84 2 33 166 5 139 5.68e-26 97.1
Msa0798810 MtrunA17_Chr8g0369311 35.766 137 83 3 33 166 61 195 2.94e-25 97.1
Msa0798810 MtrunA17_Chr2g0316201 40.000 105 62 1 54 157 30 134 1.39e-21 85.9
Msa0798810 MtrunA17_Chr2g0316211 40.000 105 62 1 54 157 30 134 2.09e-21 85.5
Msa0798810 MtrunA17_Chr4g0060351 27.778 144 103 1 33 175 8 151 5.21e-21 84.3
Msa0798810 MtrunA17_Chr8g0362321 26.389 144 105 1 33 175 8 151 2.27e-20 82.8
Msa0798810 MtrunA17_Chr4g0038891 32.090 134 87 2 33 162 36 169 4.57e-18 77.4
Msa0798810 MtrunA17_Chr5g0396451 38.824 85 52 0 69 153 73 157 6.61e-18 77.0
Msa0798810 MtrunA17_Chr3g0139901 30.075 133 89 3 29 157 3 135 1.12e-17 75.9
Msa0798810 MtrunA17_Chr1g0199951 33.962 106 70 0 51 156 65 170 2.97e-17 75.5
Msa0798810 MtrunA17_Chr4g0059291 33.043 115 74 3 56 167 27 141 6.59e-17 74.7
Msa0798810 MtrunA17_Chr4g0031181 30.833 120 70 1 63 169 40 159 1.13e-15 70.9
Msa0798810 MtrunA17_Chr8g0348701 34.615 104 64 4 67 167 39 141 9.64e-15 68.9
Msa0798810 MtrunA17_Chr8g0387131 25.850 147 98 3 23 167 4 141 1.79e-14 68.2
Msa0798810 MtrunA17_Chr3g0131871 32.743 113 74 2 56 166 30 142 2.28e-14 68.2
Msa0798810 MtrunA17_Chr2g0328001 30.000 120 71 1 63 169 40 159 4.35e-14 66.6
Msa0798810 MtrunA17_Chr4g0053191 29.915 117 79 2 53 166 33 149 1.95e-13 64.7
Msa0798810 MtrunA17_Chr8g0378601 30.709 127 82 3 23 147 16 138 3.78e-13 64.3
Msa0798810 MtrunA17_Chr7g0254701 33.684 95 63 0 72 166 54 148 1.15e-12 64.3
Msa0798810 MtrunA17_Chr5g0401831 28.571 119 82 2 52 167 32 150 1.26e-12 62.8
Msa0798810 MtrunA17_Chr2g0313441 87.500 32 4 0 5 36 23 54 2.99e-12 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0798810 AT4G36800.2 85.870 184 25 1 1 183 1 184 1.91e-120 338
Msa0798810 AT4G36800.1 85.870 184 25 1 1 183 1 184 1.91e-120 338
Msa0798810 AT2G18600.1 83.243 185 29 1 1 183 1 185 1.67e-113 320
Msa0798810 AT2G18600.2 83.243 185 29 1 1 183 1 185 1.67e-113 320
Msa0798810 AT5G56150.1 36.029 136 84 2 33 166 5 139 1.12e-26 99.4
Msa0798810 AT3G08690.2 37.500 136 82 2 33 166 5 139 3.14e-26 98.2
Msa0798810 AT3G08690.1 37.500 136 82 2 33 166 5 139 3.14e-26 98.2
Msa0798810 AT4G27960.1 36.765 136 83 2 33 166 5 139 3.35e-26 98.2
Msa0798810 AT2G16740.1 36.765 136 83 2 33 166 5 139 3.50e-26 98.2
Msa0798810 AT5G41700.4 35.294 136 86 1 33 166 5 140 3.91e-26 97.8
Msa0798810 AT1G64230.2 36.029 136 84 2 33 166 5 139 5.62e-26 97.4
Msa0798810 AT1G64230.1 36.029 136 84 2 33 166 5 139 5.62e-26 97.4
Msa0798810 AT5G53300.2 36.029 136 84 2 33 166 5 139 9.93e-26 97.1
Msa0798810 AT5G53300.4 36.029 136 84 2 33 166 5 139 9.93e-26 97.1
Msa0798810 AT5G53300.1 36.029 136 84 2 33 166 5 139 9.93e-26 97.1
Msa0798810 AT4G27960.2 36.765 136 83 2 33 166 35 169 1.83e-25 97.1
Msa0798810 AT1G64230.3 34.028 144 85 2 33 166 5 148 2.91e-25 95.9
Msa0798810 AT5G41700.5 35.294 136 85 2 33 166 5 139 6.46e-25 94.7
Msa0798810 AT5G41700.2 35.294 136 85 2 33 166 5 139 6.46e-25 94.7
Msa0798810 AT5G41700.1 35.294 136 85 2 33 166 5 139 6.46e-25 94.7
Msa0798810 AT3G08700.2 34.783 138 86 3 33 167 5 141 1.20e-24 94.0
Msa0798810 AT3G08700.1 34.783 138 86 3 33 167 5 141 1.20e-24 94.0
Msa0798810 AT1G64230.5 38.393 112 68 1 56 166 70 181 2.72e-24 94.4
Msa0798810 AT1G64230.4 38.393 112 68 1 56 166 70 181 2.72e-24 94.4
Msa0798810 AT5G56150.2 39.815 108 61 3 33 138 5 110 1.34e-21 85.1
Msa0798810 AT1G78870.2 40.000 105 62 1 54 157 30 134 2.18e-21 85.9
Msa0798810 AT1G16890.2 39.048 105 63 1 54 157 30 134 7.45e-21 84.3
Msa0798810 AT1G16890.3 39.048 105 63 1 54 157 39 143 1.20e-20 84.3
Msa0798810 AT1G16890.1 41.837 98 56 1 61 157 4 101 1.50e-20 82.8
Msa0798810 AT1G78870.4 41.837 98 56 1 61 157 4 101 1.65e-20 82.8
Msa0798810 AT2G02760.1 27.083 144 104 1 33 175 8 151 1.73e-20 83.6
Msa0798810 AT2G02760.2 27.083 144 104 1 33 175 8 151 1.73e-20 83.6
Msa0798810 AT2G02760.4 27.083 144 104 1 33 175 8 151 1.73e-20 83.6
Msa0798810 AT2G02760.3 27.083 144 104 1 33 175 8 151 1.73e-20 83.6
Msa0798810 AT1G14400.1 27.083 144 104 1 33 175 8 151 6.48e-20 82.0
Msa0798810 AT1G14400.2 27.083 144 104 1 33 175 8 151 6.48e-20 82.0
Msa0798810 AT5G53300.3 37.500 104 62 2 33 134 5 107 6.25e-19 78.2
Msa0798810 AT1G78870.1 41.414 99 56 2 61 157 4 102 9.39e-19 78.2
Msa0798810 AT5G62540.1 27.273 143 103 1 33 174 8 150 1.67e-18 78.2
Msa0798810 AT3G20060.2 37.500 88 55 0 69 156 32 119 6.22e-18 76.3
Msa0798810 AT3G20060.1 37.500 88 55 0 69 156 77 164 9.82e-18 77.0
Msa0798810 AT3G13550.1 32.061 131 86 2 17 145 24 153 1.02e-17 77.0
Msa0798810 AT3G13550.2 32.540 126 82 2 17 140 24 148 1.20e-17 76.6
Msa0798810 AT5G41700.3 38.384 99 58 2 33 129 5 102 1.51e-17 75.5
Msa0798810 AT5G25760.1 30.827 133 88 3 29 157 3 135 1.66e-17 75.9
Msa0798810 AT5G25760.2 30.827 133 88 3 29 157 3 135 1.66e-17 75.9
Msa0798810 AT1G36340.2 34.821 112 72 1 56 166 34 145 2.25e-17 75.5
Msa0798810 AT1G36340.1 34.821 112 72 1 56 166 34 145 2.25e-17 75.5
Msa0798810 AT5G41340.1 38.462 104 60 4 67 167 39 141 1.10e-16 74.3
Msa0798810 AT1G50490.1 36.364 88 56 0 69 156 76 163 1.12e-16 74.3
Msa0798810 AT1G63800.1 37.500 104 61 4 67 167 39 141 1.80e-16 73.9
Msa0798810 AT1G63800.2 37.500 104 61 4 67 167 24 126 2.39e-16 73.2
Msa0798810 AT5G41340.2 36.000 100 62 2 70 167 7 106 5.28e-16 71.6
Msa0798810 AT1G78870.3 43.590 78 43 1 54 130 30 107 5.67e-16 70.5
Msa0798810 AT3G24515.1 33.607 122 73 2 53 166 36 157 1.00e-15 74.3
Msa0798810 AT5G50870.1 35.417 96 61 1 72 166 47 142 1.13e-15 72.0
Msa0798810 AT2G46030.5 34.783 115 72 3 56 167 27 141 3.24e-15 70.5
Msa0798810 AT2G46030.1 34.783 115 72 3 56 167 27 141 3.24e-15 70.5
Msa0798810 AT3G24515.3 35.577 104 63 1 67 166 79 182 4.84e-15 72.4
Msa0798810 AT2G46030.4 34.783 115 72 3 56 167 30 144 6.02e-15 69.7
Msa0798810 AT2G46030.2 34.783 115 72 3 56 167 30 144 6.02e-15 69.7
Msa0798810 AT2G46030.3 35.088 114 71 3 56 166 99 212 7.35e-15 70.9
Msa0798810 AT5G50870.2 38.667 75 45 1 72 145 47 121 5.05e-14 67.8
Msa0798810 AT3G57870.1 30.769 117 78 2 53 166 34 150 8.80e-14 66.2
Msa0798810 AT5G59300.1 29.167 120 72 1 63 169 40 159 4.92e-13 64.3
Msa0798810 AT3G55380.1 29.412 119 71 1 64 169 42 160 5.07e-13 64.3
Msa0798810 AT3G46460.1 28.333 120 73 1 63 169 40 159 5.87e-13 63.9
Msa0798810 AT5G05080.2 33.684 95 63 0 72 166 54 148 8.94e-13 65.1
Msa0798810 AT5G05080.3 33.684 95 63 0 72 166 54 148 8.94e-13 65.1
Msa0798810 AT5G05080.1 33.684 95 63 0 72 166 54 148 8.94e-13 65.1
Msa0798810 AT5G05080.4 33.684 95 63 0 72 166 54 148 8.94e-13 65.1
Msa0798810 AT3G46460.3 27.523 109 66 1 74 169 9 117 8.33e-11 57.4
Msa0798810 AT3G46460.2 27.523 109 66 1 74 169 9 117 8.33e-11 57.4

Find 65 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCTTCCAAGTCAATATT+TGG 0.142980 5_3:-11761731 None:intergenic
TATTCTAAACAATCAGAAAA+TGG 0.229500 5_3:+11762287 Msa0798810:three_prime_UTR
TTCAGGGGATCCTCGTAATT+TGG 0.241596 5_3:-11761935 None:intergenic
CAGCAGCGGCATCATGATTC+AGG 0.258270 5_3:-11761952 None:intergenic
ACATTAGATTCAAACATCTT+TGG 0.268686 5_3:-11761989 None:intergenic
GATGTAACTTATGTGCTTTA+TGG 0.270626 5_3:+11762251 Msa0798810:three_prime_UTR
CCAGCACTTTGCTTCTTAAC+AGG 0.282485 5_3:-11759473 None:intergenic
AGATGACAGTGTTTATATTA+AGG 0.283684 5_3:-11761793 None:intergenic
CTTAACAGGTACTCCATTAC+TGG 0.300967 5_3:-11759459 None:intergenic
TAGATGCGTTTGGTGGTCTA+AGG 0.327340 5_3:-11762206 None:intergenic
ACATCAACATTCCAATTGTT+TGG 0.337427 5_3:-11762233 None:intergenic
AATATAAACACTGTCATCTA+TGG 0.349971 5_3:+11761797 Msa0798810:CDS
TTCAATCTTCTCAATCAATC+AGG 0.362380 5_3:+11758514 Msa0798810:five_prime_UTR
TTTGTCTTGCACTTCACCTT+GGG 0.370105 5_3:-11761583 None:intergenic
CATTGATAATATATTTCAAA+AGG 0.384723 5_3:-11762094 None:intergenic
TTTCTTGGTGGAGGAGCATC+AGG 0.389923 5_3:+11762177 Msa0798810:three_prime_UTR
GGGTGCTTCATGTGGATAGA+TGG 0.399776 5_3:-11761563 None:intergenic
GGCAATGTCTGGTGGGTATG+TGG 0.402485 5_3:+11762018 Msa0798810:CDS
CTTTGTCTTGCACTTCACCT+TGG 0.407733 5_3:-11761584 None:intergenic
CATCAGGTCATCTTTGCCAT+TGG 0.416464 5_3:-11761219 None:intergenic
ATCAGGTCATCTTTGCCATT+GGG 0.429309 5_3:-11761218 None:intergenic
GCATCTAAAAGCCAAACAAT+TGG 0.433067 5_3:+11762222 Msa0798810:three_prime_UTR
TCAAAACTTCGAAGTTCATC+AGG 0.454455 5_3:-11761235 None:intergenic
AATTGCATGGTGCAAGACTT+TGG 0.456157 5_3:-11761194 None:intergenic
ATTCTAAACAATCAGAAAAT+GGG 0.468228 5_3:+11762288 Msa0798810:three_prime_UTR
ATTGATAATATATTTCAAAA+GGG 0.474553 5_3:-11762093 None:intergenic
TACAAGTAATATCCATCATC+GGG 0.483744 5_3:-11761263 None:intergenic
GAGCATGGTTTACATACAGC+GGG 0.483927 5_3:-11762056 None:intergenic
GATTAAACTATTTAAAGTAA+AGG 0.497569 5_3:+11759409 Msa0798810:CDS
TTCACCTTGGGTGCTTCATG+TGG 0.501905 5_3:-11761571 None:intergenic
CATCCAAATATTGACTTGGA+AGG 0.507990 5_3:+11761728 Msa0798810:CDS
GCAATGTCTGGTGGGTATGT+GGG 0.513890 5_3:+11762019 Msa0798810:CDS
ACAGTGTTTATATTAAGGAC+AGG 0.514717 5_3:-11761788 None:intergenic
TCAACATCTTAAGAGAAGAC+TGG 0.523814 5_3:+11761762 Msa0798810:CDS
GGCATGGAAGTTGTTGAGCA+TGG 0.530108 5_3:-11762071 None:intergenic
TTACAAGTAATATCCATCAT+CGG 0.536160 5_3:-11761264 None:intergenic
TGGCTTGTATCATCTCTTCA+CGG 0.539377 5_3:+11761817 Msa0798810:CDS
AGCAGCGGCATCATGATTCA+GGG 0.539634 5_3:-11761951 None:intergenic
CTACCATCCAAATATTGACT+TGG 0.541780 5_3:+11761724 Msa0798810:CDS
AATATATTTCAAAAGGGGCA+TGG 0.542808 5_3:-11762087 None:intergenic
ATAGATGGGAGACACATTGA+AGG 0.544925 5_3:-11761548 None:intergenic
AAATATATTATCAATGCCCA+TGG 0.546894 5_3:+11762101 Msa0798810:three_prime_UTR
CTTCCAAGTCAATATTTGGA+TGG 0.548559 5_3:-11761727 None:intergenic
CAAGCTGAAAATGCCAGTAA+TGG 0.548896 5_3:+11759446 Msa0798810:CDS
TTGATAATATATTTCAAAAG+GGG 0.567269 5_3:-11762092 None:intergenic
TTTGCCATTGGGAAATTGCA+TGG 0.574210 5_3:-11761207 None:intergenic
CCTGTTAAGAAGCAAAGTGC+TGG 0.575364 5_3:+11759473 Msa0798810:CDS
AATGTGAGGAGGGCAATGTC+TGG 0.586922 5_3:+11762007 Msa0798810:CDS
GGTGCTTCATGTGGATAGAT+GGG 0.590678 5_3:-11761562 None:intergenic
GTGAGGAGGGCAATGTCTGG+TGG 0.597624 5_3:+11762010 Msa0798810:CDS
GTTTGAATCTAATGTGAGGA+GGG 0.602029 5_3:+11761997 Msa0798810:CDS
TGCACCATGCAATTTCCCAA+TGG 0.605830 5_3:+11761203 Msa0798810:CDS
CTATCCACATGAAGCACCCA+AGG 0.621344 5_3:+11761567 Msa0798810:CDS
CAATCAGAAAATGGGTTCAG+CGG 0.622698 5_3:+11762296 Msa0798810:three_prime_UTR
GGCGAGTTGCGTCTTCACAA+AGG 0.628980 5_3:+11759494 Msa0798810:CDS
TGAGGAGGGCAATGTCTGGT+GGG 0.629398 5_3:+11762011 Msa0798810:CDS
CAAGGTGAAGTGCAAGACAA+AGG 0.630470 5_3:+11761585 Msa0798810:CDS
TGTTTGAATCTAATGTGAGG+AGG 0.637414 5_3:+11761996 Msa0798810:CDS
GCAGCGGCATCATGATTCAG+GGG 0.671229 5_3:-11761950 None:intergenic
TGAGCATGGTTTACATACAG+CGG 0.671953 5_3:-11762057 None:intergenic
GCATGGTTTACATACAGCGG+GGG 0.678401 5_3:-11762054 None:intergenic
AGATGTTTGAATCTAATGTG+AGG 0.682109 5_3:+11761993 Msa0798810:CDS
TGTGCAGGAGCCAAATTACG+AGG 0.709133 5_3:+11761925 Msa0798810:intron
ATTATCTCTCAAGACAGCAG+CGG 0.713092 5_3:-11761966 None:intergenic
AGCATGGTTTACATACAGCG+GGG 0.717629 5_3:-11762055 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTACTTTTTTTTTTTTTTAA+GGG + chr5_3:11759071-11759090 Msa0798810:intron 10.0%
!! AAGAAAGAAATATATAAATA+GGG - chr5_3:11760103-11760122 None:intergenic 10.0%
!! AAAGAAAGAAATATATAAAT+AGG - chr5_3:11760104-11760123 None:intergenic 10.0%
!!! ATGTTGTTTTATTATTTTTT+CGG + chr5_3:11760430-11760449 Msa0798810:intron 10.0%
!!! ATTGATAATATATTTCAAAA+GGG - chr5_3:11762096-11762115 None:intergenic 10.0%
!! TAAAGGTAAATTATGAATTA+GGG - chr5_3:11758651-11758670 None:intergenic 15.0%
!! ATAAAGGTAAATTATGAATT+AGG - chr5_3:11758652-11758671 None:intergenic 15.0%
!! TTTGATATCATTATTCATTA+TGG + chr5_3:11758891-11758910 Msa0798810:intron 15.0%
!! TTGATATCATTATTCATTAT+GGG + chr5_3:11758892-11758911 Msa0798810:intron 15.0%
!!! GCTACTTTTTTTTTTTTTTA+AGG + chr5_3:11759070-11759089 Msa0798810:intron 15.0%
!!! GATTAAACTATTTAAAGTAA+AGG + chr5_3:11759409-11759428 Msa0798810:CDS 15.0%
!! AAGTAAACAATTTAATAAGA+AGG - chr5_3:11759523-11759542 None:intergenic 15.0%
!! ATATTTGTGTAATTTATTTC+TGG - chr5_3:11759737-11759756 None:intergenic 15.0%
!! AATAAATTACACAAATATCT+TGG + chr5_3:11759739-11759758 Msa0798810:intron 15.0%
!! AATCACTAATAAAATTACTA+AGG - chr5_3:11760904-11760923 None:intergenic 15.0%
!! AAAATAACAAAAAGATAAAG+TGG - chr5_3:11761298-11761317 None:intergenic 15.0%
!!! AAAATTGATTCTTGTTTTTA+AGG + chr5_3:11761337-11761356 Msa0798810:intron 15.0%
!!! TTTATATCATGTTATTTGTT+TGG + chr5_3:11761381-11761400 Msa0798810:intron 15.0%
!!! TTGATAATATATTTCAAAAG+GGG - chr5_3:11762095-11762114 None:intergenic 15.0%
!!! CATTGATAATATATTTCAAA+AGG - chr5_3:11762097-11762116 None:intergenic 15.0%
!!! AAATAAATTTTACAAACCAT+GGG - chr5_3:11762120-11762139 None:intergenic 15.0%
!! GAATAATGATATCAAAGAAT+CGG - chr5_3:11758887-11758906 None:intergenic 20.0%
!!! ATATTTGTTGCTTTTGAAAA+AGG + chr5_3:11758977-11758996 Msa0798810:intron 20.0%
!!! CTAAACATACAATTTTTTGT+TGG + chr5_3:11759237-11759256 Msa0798810:intron 20.0%
!!! TAGAAGTTTTTACTTGATAT+AGG + chr5_3:11759814-11759833 Msa0798810:intron 20.0%
!! ATAATCTACATAATGTAGTT+AGG + chr5_3:11759852-11759871 Msa0798810:intron 20.0%
!! ATATATAAATAGGGATGAAA+AGG - chr5_3:11760094-11760113 None:intergenic 20.0%
!!! ATTTTATGCAATGTTATTAG+AGG - chr5_3:11760384-11760403 None:intergenic 20.0%
!! TTGCATAAAATGAGTAAAAT+TGG + chr5_3:11760393-11760412 Msa0798810:intron 20.0%
!! TTAAATATTGTGTATTCTCA+CGG + chr5_3:11760634-11760653 Msa0798810:intron 20.0%
!! AACAGAAGAAAATCAAATAT+AGG - chr5_3:11760701-11760720 None:intergenic 20.0%
!!! TATTAGTGATTTTTCATGAA+AGG + chr5_3:11760913-11760932 Msa0798810:intron 20.0%
!! ACTTGTATAACAAAATAAAG+TGG - chr5_3:11761128-11761147 None:intergenic 20.0%
!!! CAAGAATCAATTTTAAAGTT+AGG - chr5_3:11761331-11761350 None:intergenic 20.0%
!! GCTAAATTAAATGTATAATC+TGG + chr5_3:11761423-11761442 Msa0798810:intron 20.0%
!! TAAAACAGAATATGAAAACA+AGG - chr5_3:11761663-11761682 None:intergenic 20.0%
!!! GAAATAAATTTTACAAACCA+TGG - chr5_3:11762121-11762140 None:intergenic 20.0%
!! TATTCTAAACAATCAGAAAA+TGG + chr5_3:11762287-11762306 Msa0798810:three_prime_UTR 20.0%
!! ATTCTAAACAATCAGAAAAT+GGG + chr5_3:11762288-11762307 Msa0798810:three_prime_UTR 20.0%
! TTTCAATTAGAGAGAGATAA+AGG - chr5_3:11758668-11758687 None:intergenic 25.0%
! CTCAATAAAAAAAACTAGCT+AGG - chr5_3:11758950-11758969 None:intergenic 25.0%
!!! CTAGCTAGTTTTTTTTATTG+AGG + chr5_3:11758948-11758967 Msa0798810:intron 25.0%
! TTGGATTAATGAACTAGATA+GGG + chr5_3:11759256-11759275 Msa0798810:intron 25.0%
!!! TTTTTGTTGTTCTTGTTGAA+AGG + chr5_3:11759296-11759315 Msa0798810:intron 25.0%
! TTCATTGTGTTAAATTTGTG+TGG + chr5_3:11759552-11759571 Msa0798810:intron 25.0%
! CAAACCAAAACATATATCTT+CGG - chr5_3:11759781-11759800 None:intergenic 25.0%
! AACTCTGGATATTTAATGAT+TGG + chr5_3:11760009-11760028 Msa0798810:intron 25.0%
! TAAGACTCGATGAAAAATAA+AGG - chr5_3:11760049-11760068 None:intergenic 25.0%
! TCTTGAATCAATTAACAATG+AGG - chr5_3:11760137-11760156 None:intergenic 25.0%
! AAATGAGTAAAATTGGACAA+AGG + chr5_3:11760400-11760419 Msa0798810:intron 25.0%
! TCATTCAACAATAAACTATC+TGG - chr5_3:11760606-11760625 None:intergenic 25.0%
!!! TATTTGATTTTCTTCTGTTC+TGG + chr5_3:11760702-11760721 Msa0798810:intron 25.0%
! AAAGAAAAAGAACAATCACA+TGG - chr5_3:11760802-11760821 None:intergenic 25.0%
!! TGATTGTTCTTTTTCTTTCT+TGG + chr5_3:11760804-11760823 Msa0798810:intron 25.0%
!! GATTGTTCTTTTTCTTTCTT+GGG + chr5_3:11760805-11760824 Msa0798810:intron 25.0%
! AAGCCTTCATTAAATATACT+GGG - chr5_3:11760845-11760864 None:intergenic 25.0%
! AAAGCCTTCATTAAATATAC+TGG - chr5_3:11760846-11760865 None:intergenic 25.0%
! TGTATAACAAAATAAAGTGG+CGG - chr5_3:11761125-11761144 None:intergenic 25.0%
! TTACAAGTAATATCCATCAT+CGG - chr5_3:11761267-11761286 None:intergenic 25.0%
! AGATGACAGTGTTTATATTA+AGG - chr5_3:11761796-11761815 None:intergenic 25.0%
! AATATAAACACTGTCATCTA+TGG + chr5_3:11761797-11761816 Msa0798810:CDS 25.0%
!!! CTCTGTTTTTTAACATATCA+GGG + chr5_3:11761845-11761864 Msa0798810:intron 25.0%
! ACATTAGATTCAAACATCTT+TGG - chr5_3:11761992-11762011 None:intergenic 25.0%
! AAATATATTATCAATGCCCA+TGG + chr5_3:11762101-11762120 Msa0798810:three_prime_UTR 25.0%
TTCAATCTTCTCAATCAATC+AGG + chr5_3:11758514-11758533 Msa0798810:five_prime_UTR 30.0%
GTAAATTATGAATTAGGGTG+AGG - chr5_3:11758646-11758665 None:intergenic 30.0%
! TGATTTTGCAAAAGCTATGT+AGG + chr5_3:11759158-11759177 Msa0798810:intron 30.0%
! GATTTTGCAAAAGCTATGTA+GGG + chr5_3:11759159-11759178 Msa0798810:intron 30.0%
TTGTATGTTTAGTATCACTG+CGG - chr5_3:11759229-11759248 None:intergenic 30.0%
GTTGGATTAATGAACTAGAT+AGG + chr5_3:11759255-11759274 Msa0798810:intron 30.0%
ATTAATGAACTAGATAGGGA+TGG + chr5_3:11759260-11759279 Msa0798810:intron 30.0%
TTAATGAACTAGATAGGGAT+GGG + chr5_3:11759261-11759280 Msa0798810:intron 30.0%
!!! TTGTAGATGTTGTTTTTGCT+TGG + chr5_3:11759322-11759341 Msa0798810:intron 30.0%
! ACTACCGAAGATATATGTTT+TGG + chr5_3:11759774-11759793 Msa0798810:intron 30.0%
AAATAAAGGAGGAAGAGAAT+GGG - chr5_3:11760035-11760054 None:intergenic 30.0%
AAAATAAAGGAGGAAGAGAA+TGG - chr5_3:11760036-11760055 None:intergenic 30.0%
TAAAATCCACCATAAGAGTA+TGG - chr5_3:11760336-11760355 None:intergenic 30.0%
!!! ATACTCTTATGGTGGATTTT+AGG + chr5_3:11760335-11760354 Msa0798810:intron 30.0%
TTTCCGTGAAAATTTACTGT+AGG + chr5_3:11760554-11760573 Msa0798810:intron 30.0%
GGTTATCACTTAACAAGTAT+AGG - chr5_3:11760764-11760783 None:intergenic 30.0%
! TACTTGTTAAGTGATAACCT+TGG + chr5_3:11760765-11760784 Msa0798810:intron 30.0%
! ACTTGTTAAGTGATAACCTT+GGG + chr5_3:11760766-11760785 Msa0798810:intron 30.0%
TCTCCCAGTATATTTAATGA+AGG + chr5_3:11760839-11760858 Msa0798810:intron 30.0%
! AGGCTTTTTATCTTGAGAAT+TGG + chr5_3:11760859-11760878 Msa0798810:intron 30.0%
ATGAAAGGAAACTTCTTTAG+TGG + chr5_3:11760928-11760947 Msa0798810:intron 30.0%
TACATGTTTAAGCTGACTAA+TGG - chr5_3:11760975-11760994 None:intergenic 30.0%
TACAAGTAATATCCATCATC+GGG - chr5_3:11761266-11761285 None:intergenic 30.0%
!! GATGATGGATATTACTTGTA+AGG + chr5_3:11761266-11761285 Msa0798810:intron 30.0%
!!! CAATTTTAAAGTTAGGCTAC+AGG - chr5_3:11761324-11761343 None:intergenic 30.0%
CATGATATAAAGACAGCATA+GGG - chr5_3:11761372-11761391 None:intergenic 30.0%
ACATGATATAAAGACAGCAT+AGG - chr5_3:11761373-11761392 None:intergenic 30.0%
!!! CTGTTTTTTCGTCATTTTGA+GGG - chr5_3:11761468-11761487 None:intergenic 30.0%
!!! TCTGTTTTTTCGTCATTTTG+AGG - chr5_3:11761469-11761488 None:intergenic 30.0%
TGTAACAAAAAACAGCATAG+AGG - chr5_3:11761507-11761526 None:intergenic 30.0%
!!! TATGCTGTTTTTTGTTACAG+AGG + chr5_3:11761508-11761527 Msa0798810:intron 30.0%
TTAACTACAATTCATGCTTC+TGG + chr5_3:11761630-11761649 Msa0798810:intron 30.0%
TAACTACAATTCATGCTTCT+GGG + chr5_3:11761631-11761650 Msa0798810:intron 30.0%
GTATCATTATGTGTATATGC+AGG + chr5_3:11761700-11761719 Msa0798810:intron 30.0%
TTTCCTTCCAAGTCAATATT+TGG - chr5_3:11761734-11761753 None:intergenic 30.0%
ACAGTGTTTATATTAAGGAC+AGG - chr5_3:11761791-11761810 None:intergenic 30.0%
!!! GCTCTGTTTTTTAACATATC+AGG + chr5_3:11761844-11761863 Msa0798810:intron 30.0%
!! TCAGGGTTTTGATATTTGAA+CGG + chr5_3:11761862-11761881 Msa0798810:intron 30.0%
AGATGTTTGAATCTAATGTG+AGG + chr5_3:11761993-11762012 Msa0798810:CDS 30.0%
AATATATTTCAAAAGGGGCA+TGG - chr5_3:11762090-11762109 None:intergenic 30.0%
!!! CGTCAGTATGTTATTTTTCT+TGG + chr5_3:11762162-11762181 Msa0798810:three_prime_UTR 30.0%
!!! CAGTATGTTATTTTTCTTGG+TGG + chr5_3:11762165-11762184 Msa0798810:three_prime_UTR 30.0%
!!! TATGTTATTTTTCTTGGTGG+AGG + chr5_3:11762168-11762187 Msa0798810:three_prime_UTR 30.0%
ACATCAACATTCCAATTGTT+TGG - chr5_3:11762236-11762255 None:intergenic 30.0%
GATGTAACTTATGTGCTTTA+TGG + chr5_3:11762251-11762270 Msa0798810:three_prime_UTR 30.0%
AAAAACAGAAACCCTAGAAG+AGG - chr5_3:11758612-11758631 None:intergenic 35.0%
ACAAGAATAAGATCGCGTTT+AGG - chr5_3:11758836-11758855 None:intergenic 35.0%
ATGATATCAAAGAATCGGCA+TGG - chr5_3:11758882-11758901 None:intergenic 35.0%
CATTATGGGACAAAATTAGC+TGG + chr5_3:11758906-11758925 Msa0798810:intron 35.0%
!! CTGAGTTTGAGTTCGATTTT+TGG - chr5_3:11759127-11759146 None:intergenic 35.0%
CAAAAATCGAACTCAAACTC+AGG + chr5_3:11759125-11759144 Msa0798810:intron 35.0%
TGTATGTTTAGTATCACTGC+GGG - chr5_3:11759228-11759247 None:intergenic 35.0%
! GATATGAAGTGTTCTAATGC+TGG + chr5_3:11759362-11759381 Msa0798810:intron 35.0%
!!! CTGGTTGATGTTGTTTTTGT+AGG + chr5_3:11759381-11759400 Msa0798810:intron 35.0%
!!! TTGCCATAGCAGGAATTTTT+TGG + chr5_3:11759653-11759672 Msa0798810:intron 35.0%
!!! TGCCATAGCAGGAATTTTTT+GGG + chr5_3:11759654-11759673 Msa0798810:intron 35.0%
GACTCGATGAAAAATAAAGG+AGG - chr5_3:11760046-11760065 None:intergenic 35.0%
! GCTGCTAACAATGATACTTT+TGG + chr5_3:11760157-11760176 Msa0798810:intron 35.0%
! ATGTTATTAGAGGATGATGG+TGG - chr5_3:11760374-11760393 None:intergenic 35.0%
GCAATGTTATTAGAGGATGA+TGG - chr5_3:11760377-11760396 None:intergenic 35.0%
ACAAGGTAGAGATAAGTGAA+TGG + chr5_3:11760470-11760489 Msa0798810:intron 35.0%
AATGGAAAACCTTGAGATTG+TGG + chr5_3:11760488-11760507 Msa0798810:intron 35.0%
TTCTTACTACCACAATCTCA+AGG - chr5_3:11760500-11760519 None:intergenic 35.0%
TGTGGTAGTAAGAATGATCT+AGG + chr5_3:11760506-11760525 Msa0798810:intron 35.0%
ATCTAGGAGTTGAATTAGCA+AGG + chr5_3:11760522-11760541 Msa0798810:intron 35.0%
! GAGCCTACAGTAAATTTTCA+CGG - chr5_3:11760560-11760579 None:intergenic 35.0%
!! ATAAGAGCATTCACACTTCA+CGG - chr5_3:11760731-11760750 None:intergenic 35.0%
CTTGTTAAGTGATAACCTTG+GGG + chr5_3:11760767-11760786 Msa0798810:intron 35.0%
TTGTTAAGTGATAACCTTGG+GGG + chr5_3:11760768-11760787 Msa0798810:intron 35.0%
! TGTTCTTTTTCTTTCTTGGG+CGG + chr5_3:11760808-11760827 Msa0798810:intron 35.0%
TCAAAACTTCGAAGTTCATC+AGG - chr5_3:11761238-11761257 None:intergenic 35.0%
AACAAAAAACAGCATAGAGG+TGG - chr5_3:11761504-11761523 None:intergenic 35.0%
! CTACCATCCAAATATTGACT+TGG + chr5_3:11761724-11761743 Msa0798810:CDS 35.0%
CTTCCAAGTCAATATTTGGA+TGG - chr5_3:11761730-11761749 None:intergenic 35.0%
!! CATCCAAATATTGACTTGGA+AGG + chr5_3:11761728-11761747 Msa0798810:CDS 35.0%
TCAACATCTTAAGAGAAGAC+TGG + chr5_3:11761762-11761781 Msa0798810:CDS 35.0%
!! CAGGGTTTTGATATTTGAAC+GGG + chr5_3:11761863-11761882 Msa0798810:intron 35.0%
!! AGGGTTTTGATATTTGAACG+GGG + chr5_3:11761864-11761883 Msa0798810:intron 35.0%
ACGGGGATACTTGAAATTTA+TGG + chr5_3:11761881-11761900 Msa0798810:intron 35.0%
! ATCTGTTACTTATTGTGTGC+AGG + chr5_3:11761910-11761929 Msa0798810:intron 35.0%
TGTTTGAATCTAATGTGAGG+AGG + chr5_3:11761996-11762015 Msa0798810:CDS 35.0%
GTTTGAATCTAATGTGAGGA+GGG + chr5_3:11761997-11762016 Msa0798810:CDS 35.0%
GCATCTAAAAGCCAAACAAT+TGG + chr5_3:11762222-11762241 Msa0798810:three_prime_UTR 35.0%
GAGATCGATAATTGAGAGAG+AGG - chr5_3:11758579-11758598 None:intergenic 40.0%
AGAAACCCTAGAAGAGGAAA+GGG - chr5_3:11758606-11758625 None:intergenic 40.0%
GAAGTTCTACGATTAGATCG+CGG + chr5_3:11758769-11758788 Msa0798810:intron 40.0%
! TAGATAGGGATGGGCTTAAT+TGG + chr5_3:11759270-11759289 Msa0798810:intron 40.0%
CAAGCTGAAAATGCCAGTAA+TGG + chr5_3:11759446-11759465 Msa0798810:CDS 40.0%
CTTAACAGGTACTCCATTAC+TGG - chr5_3:11759462-11759481 None:intergenic 40.0%
GATTCAAGTATTCTGGCCAT+GGG - chr5_3:11759590-11759609 None:intergenic 40.0%
CCAGAATACTTGAATCGAGA+GGG + chr5_3:11759594-11759613 Msa0798810:intron 40.0%
ATACTTGAATCGAGAGGGAA+AGG + chr5_3:11759599-11759618 Msa0798810:intron 40.0%
GAGGGAAAGGTGAACAATAA+AGG + chr5_3:11759612-11759631 Msa0798810:intron 40.0%
TAATGTGTAGTTGCCATAGC+AGG + chr5_3:11759643-11759662 Msa0798810:intron 40.0%
!!! GCCATAGCAGGAATTTTTTG+GGG + chr5_3:11759655-11759674 Msa0798810:intron 40.0%
!!! CCATAGCAGGAATTTTTTGG+GGG + chr5_3:11759656-11759675 Msa0798810:intron 40.0%
TTTCTGGATTTCATTCTCGC+TGG - chr5_3:11759721-11759740 None:intergenic 40.0%
CAATTGCAGGAGATGATTGT+GGG - chr5_3:11759954-11759973 None:intergenic 40.0%
ACAATTGCAGGAGATGATTG+TGG - chr5_3:11759955-11759974 None:intergenic 40.0%
ACAATCATCTCCTGCAATTG+TGG + chr5_3:11759954-11759973 Msa0798810:intron 40.0%
ATCCAGAGTTTACTGAAGAC+TGG - chr5_3:11759999-11760018 None:intergenic 40.0%
!! AGAAGCATGGAGGTTTTCAT+AGG - chr5_3:11760290-11760309 None:intergenic 40.0%
! AGCTTATAGTAGAAGCATGG+AGG - chr5_3:11760300-11760319 None:intergenic 40.0%
TGCAGCTTATAGTAGAAGCA+TGG - chr5_3:11760303-11760322 None:intergenic 40.0%
TGTCATCTGCCATACTCTTA+TGG + chr5_3:11760324-11760343 Msa0798810:intron 40.0%
ATGAGACGCAGAAAGAAACA+AGG + chr5_3:11760453-11760472 Msa0798810:intron 40.0%
AGTGTGAATGCTCTTATGCT+TGG + chr5_3:11760734-11760753 Msa0798810:intron 40.0%
TGAAGAGTTACAAGCTCACT+AGG + chr5_3:11761008-11761027 Msa0798810:intron 40.0%
AATTGCATGGTGCAAGACTT+TGG - chr5_3:11761197-11761216 None:intergenic 40.0%
TTTGCCATTGGGAAATTGCA+TGG - chr5_3:11761210-11761229 None:intergenic 40.0%
ATCAGGTCATCTTTGCCATT+GGG - chr5_3:11761221-11761240 None:intergenic 40.0%
!!! GCTGTTTTTTGTTACAGAGG+AGG + chr5_3:11761511-11761530 Msa0798810:intron 40.0%
ATAGATGGGAGACACATTGA+AGG - chr5_3:11761551-11761570 None:intergenic 40.0%
TTTGTCTTGCACTTCACCTT+GGG - chr5_3:11761586-11761605 None:intergenic 40.0%
! TGGCTTGTATCATCTCTTCA+CGG + chr5_3:11761817-11761836 Msa0798810:CDS 40.0%
TGTATCATCTCTTCACGGTA+TGG + chr5_3:11761822-11761841 Msa0798810:intron 40.0%
ATTATCTCTCAAGACAGCAG+CGG - chr5_3:11761969-11761988 None:intergenic 40.0%
TGAGCATGGTTTACATACAG+CGG - chr5_3:11762060-11762079 None:intergenic 40.0%
!!! GTTTGGCTTTTAGATGCGTT+TGG - chr5_3:11762219-11762238 None:intergenic 40.0%
! CAATCAGAAAATGGGTTCAG+CGG + chr5_3:11762296-11762315 Msa0798810:three_prime_UTR 40.0%
GAATAGCGTGAGAGAAACGA+AGG - chr5_3:11758546-11758565 None:intergenic 45.0%
TCTTTCCCCTTTCCTCTTCT+AGG + chr5_3:11758597-11758616 Msa0798810:intron 45.0%
CTTTCCCCTTTCCTCTTCTA+GGG + chr5_3:11758598-11758617 Msa0798810:intron 45.0%
GAAACCCTAGAAGAGGAAAG+GGG - chr5_3:11758605-11758624 None:intergenic 45.0%
CAGAAACCCTAGAAGAGGAA+AGG - chr5_3:11758607-11758626 None:intergenic 45.0%
CAACGCGTACGGAAAAACAA+AGG - chr5_3:11758750-11758769 None:intergenic 45.0%
TCGTAGAACTTCAACGCGTA+CGG - chr5_3:11758761-11758780 None:intergenic 45.0%
!! CGCGGTGCTTTTTGTTGAAT+CGG + chr5_3:11758787-11758806 Msa0798810:intron 45.0%
GCAAAAGCTACGAAGCTGTT+TGG + chr5_3:11759012-11759031 Msa0798810:intron 45.0%
GAAGCTGTTTGGTATCACGT+TGG + chr5_3:11759023-11759042 Msa0798810:intron 45.0%
!!! GGGTTGCTTTTGCAAAATCG+CGG + chr5_3:11759179-11759198 Msa0798810:intron 45.0%
! GCGGTGACTTACGATGATTT+TGG + chr5_3:11759198-11759217 Msa0798810:intron 45.0%
CCAGCACTTTGCTTCTTAAC+AGG - chr5_3:11759476-11759495 None:intergenic 45.0%
CCTGTTAAGAAGCAAAGTGC+TGG + chr5_3:11759473-11759492 Msa0798810:CDS 45.0%
CGATTCAAGTATTCTGGCCA+TGG - chr5_3:11759591-11759610 None:intergenic 45.0%
GCCAGAATACTTGAATCGAG+AGG + chr5_3:11759593-11759612 Msa0798810:intron 45.0%
CCCTCTCGATTCAAGTATTC+TGG - chr5_3:11759597-11759616 None:intergenic 45.0%
CCCCCAAAAAATTCCTGCTA+TGG - chr5_3:11759659-11759678 None:intergenic 45.0%
!! TTTTTGGGGGCTTCGTTGTT+TGG + chr5_3:11759669-11759688 Msa0798810:intron 45.0%
!! TTTTGGGGGCTTCGTTGTTT+GGG + chr5_3:11759670-11759689 Msa0798810:intron 45.0%
AGAGAAGAGACCACAATTGC+AGG - chr5_3:11759967-11759986 None:intergenic 45.0%
GACCAGTCTTCAGTAAACTC+TGG + chr5_3:11759994-11760013 Msa0798810:intron 45.0%
CATCTGCCATACTCTTATGG+TGG + chr5_3:11760327-11760346 Msa0798810:intron 45.0%
!! TAGAGGATGATGGTGGTACA+TGG - chr5_3:11760367-11760386 None:intergenic 45.0%
GTGAGCTTGTAACTCTTCAC+AGG - chr5_3:11761007-11761026 None:intergenic 45.0%
TGCACCATGCAATTTCCCAA+TGG + chr5_3:11761203-11761222 Msa0798810:CDS 45.0%
CATCAGGTCATCTTTGCCAT+TGG - chr5_3:11761222-11761241 None:intergenic 45.0%
!!! GTTTTGATTCGACCCGATGA+TGG + chr5_3:11761251-11761270 Msa0798810:CDS 45.0%
AAGACAGCATAGGGACATCA+AGG - chr5_3:11761363-11761382 None:intergenic 45.0%
!! TCATTTTGAGGGTGACGTGT+AGG - chr5_3:11761457-11761476 None:intergenic 45.0%
GGTGCTTCATGTGGATAGAT+GGG - chr5_3:11761565-11761584 None:intergenic 45.0%
CTTTGTCTTGCACTTCACCT+TGG - chr5_3:11761587-11761606 None:intergenic 45.0%
CAAGGTGAAGTGCAAGACAA+AGG + chr5_3:11761585-11761604 Msa0798810:CDS 45.0%
GTGAAGTGCAAGACAAAGGT+AGG + chr5_3:11761589-11761608 Msa0798810:intron 45.0%
TTCAGGGGATCCTCGTAATT+TGG - chr5_3:11761938-11761957 None:intergenic 45.0%
AGCATGGTTTACATACAGCG+GGG - chr5_3:11762058-11762077 None:intergenic 45.0%
GAGCATGGTTTACATACAGC+GGG - chr5_3:11762059-11762078 None:intergenic 45.0%
! TAGATGCGTTTGGTGGTCTA+AGG - chr5_3:11762209-11762228 None:intergenic 45.0%
! TGGCTTTTAGATGCGTTTGG+TGG - chr5_3:11762216-11762235 None:intergenic 45.0%
CAAGTATTCTGGCCATGGGT+AGG - chr5_3:11759586-11759605 None:intergenic 50.0%
! ACATGGTTTTCTCACCCCCA+AGG - chr5_3:11760785-11760804 None:intergenic 50.0%
GGGTGCTTCATGTGGATAGA+TGG - chr5_3:11761566-11761585 None:intergenic 50.0%
! CTATCCACATGAAGCACCCA+AGG + chr5_3:11761567-11761586 Msa0798810:CDS 50.0%
TTCACCTTGGGTGCTTCATG+TGG - chr5_3:11761574-11761593 None:intergenic 50.0%
TGTGCAGGAGCCAAATTACG+AGG + chr5_3:11761925-11761944 Msa0798810:intron 50.0%
AGCAGCGGCATCATGATTCA+GGG - chr5_3:11761954-11761973 None:intergenic 50.0%
AATGTGAGGAGGGCAATGTC+TGG + chr5_3:11762007-11762026 Msa0798810:CDS 50.0%
! GCAATGTCTGGTGGGTATGT+GGG + chr5_3:11762019-11762038 Msa0798810:CDS 50.0%
TTACATACAGCGGGGGAAGA+AGG - chr5_3:11762050-11762069 None:intergenic 50.0%
GCATGGTTTACATACAGCGG+GGG - chr5_3:11762057-11762076 None:intergenic 50.0%
GGCATGGAAGTTGTTGAGCA+TGG - chr5_3:11762074-11762093 None:intergenic 50.0%
!! TTTCTTGGTGGAGGAGCATC+AGG + chr5_3:11762177-11762196 Msa0798810:three_prime_UTR 50.0%
GGCGAGTTGCGTCTTCACAA+AGG + chr5_3:11759494-11759513 Msa0798810:CDS 55.0%
GTATTCTGGCCATGGGTAGG+AGG - chr5_3:11759583-11759602 None:intergenic 55.0%
TTTGGGCCTTGGAGTGTGAC+TGG + chr5_3:11759687-11759706 Msa0798810:intron 55.0%
TCCTCTCCAGTCACACTCCA+AGG - chr5_3:11759696-11759715 None:intergenic 55.0%
CTGTAGGCTCTCCTGCTTTG+AGG + chr5_3:11760570-11760589 Msa0798810:intron 55.0%
!! TAGGCTCTCCTGCTTTGAGG+AGG + chr5_3:11760573-11760592 Msa0798810:intron 55.0%
!! TCTCCTGCTTTGAGGAGGAC+AGG + chr5_3:11760578-11760597 Msa0798810:intron 55.0%
!! CTCCTGCTTTGAGGAGGACA+GGG + chr5_3:11760579-11760598 Msa0798810:intron 55.0%
GCAGCGGCATCATGATTCAG+GGG - chr5_3:11761953-11761972 None:intergenic 55.0%
CAGCAGCGGCATCATGATTC+AGG - chr5_3:11761955-11761974 None:intergenic 55.0%
TGAGGAGGGCAATGTCTGGT+GGG + chr5_3:11762011-11762030 Msa0798810:CDS 55.0%
! GGCAATGTCTGGTGGGTATG+TGG + chr5_3:11762018-11762037 Msa0798810:CDS 55.0%
GTGGCACTTCCTCCTACCCA+TGG + chr5_3:11759571-11759590 Msa0798810:intron 60.0%
GGGCTTCGTTGTTTGGGCCT+TGG + chr5_3:11759676-11759695 Msa0798810:intron 60.0%
GCCTTGGAGTGTGACTGGAG+AGG + chr5_3:11759692-11759711 Msa0798810:intron 60.0%
GTCCCTGTCCTCCTCAAAGC+AGG - chr5_3:11760584-11760603 None:intergenic 60.0%
GTGAGGAGGGCAATGTCTGG+TGG + chr5_3:11762010-11762029 Msa0798810:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 11758415 11762324 11758415 ID=Msa0798810;Name=Msa0798810
chr5_3 mRNA 11758415 11762324 11758415 ID=Msa0798810-mRNA-1;Parent=Msa0798810;Name=Msa0798810-mRNA-1;_AED=0.17;_eAED=0.17;_QI=125|1|1|1|0.8|0.83|6|255|183
chr5_3 exon 11758415 11758535 11758415 ID=Msa0798810-mRNA-1:exon:4833;Parent=Msa0798810-mRNA-1
chr5_3 exon 11759403 11759515 11759403 ID=Msa0798810-mRNA-1:exon:4834;Parent=Msa0798810-mRNA-1
chr5_3 exon 11761174 11761282 11761174 ID=Msa0798810-mRNA-1:exon:4835;Parent=Msa0798810-mRNA-1
chr5_3 exon 11761528 11761606 11761528 ID=Msa0798810-mRNA-1:exon:4836;Parent=Msa0798810-mRNA-1
chr5_3 exon 11761722 11761838 11761722 ID=Msa0798810-mRNA-1:exon:4837;Parent=Msa0798810-mRNA-1
chr5_3 exon 11761932 11762324 11761932 ID=Msa0798810-mRNA-1:exon:4838;Parent=Msa0798810-mRNA-1
chr5_3 five_prime_UTR 11758415 11758535 11758415 ID=Msa0798810-mRNA-1:five_prime_utr;Parent=Msa0798810-mRNA-1
chr5_3 five_prime_UTR 11759403 11759406 11759403 ID=Msa0798810-mRNA-1:five_prime_utr;Parent=Msa0798810-mRNA-1
chr5_3 CDS 11759407 11759515 11759407 ID=Msa0798810-mRNA-1:cds;Parent=Msa0798810-mRNA-1
chr5_3 CDS 11761174 11761282 11761174 ID=Msa0798810-mRNA-1:cds;Parent=Msa0798810-mRNA-1
chr5_3 CDS 11761528 11761606 11761528 ID=Msa0798810-mRNA-1:cds;Parent=Msa0798810-mRNA-1
chr5_3 CDS 11761722 11761838 11761722 ID=Msa0798810-mRNA-1:cds;Parent=Msa0798810-mRNA-1
chr5_3 CDS 11761932 11762069 11761932 ID=Msa0798810-mRNA-1:cds;Parent=Msa0798810-mRNA-1
chr5_3 three_prime_UTR 11762070 11762324 11762070 ID=Msa0798810-mRNA-1:three_prime_utr;Parent=Msa0798810-mRNA-1
Gene Sequence

>Msa0798810

ATGATTAAACTATTTAAAGTAAAGGAAAAGCAGAGAGAACAAGCTGAAAATGCCAGTAATGGAGTACCTGTTAAGAAGCAAAGTGCTGGCGAGTTGCGTCTTCACAAAGATATAAGTGAGCTGAATCTACCAAAGTCTTGCACCATGCAATTTCCCAATGGCAAAGATGACCTGATGAACTTCGAAGTTTTGATTCGACCCGATGATGGATATTACTTAGGAGGTGCATTTTTGTTTTCCTTCAATGTGTCTCCCATCTATCCACATGAAGCACCCAAGGTGAAGTGCAAGACAAAGGTCTACCATCCAAATATTGACTTGGAAGGAAATGTGTGTCTCAACATCTTAAGAGAAGACTGGAAACCTGTCCTTAATATAAACACTGTCATCTATGGCTTGTATCATCTCTTCACGGAGCCAAATTACGAGGATCCCCTGAATCATGATGCCGCTGCTGTCTTGAGAGATAATCCAAAGATGTTTGAATCTAATGTGAGGAGGGCAATGTCTGGTGGGTATGTGGGACAAACCTTCTTCCCCCGCTGTATGTAA

Protein sequence

>Msa0798810

MIKLFKVKEKQREQAENASNGVPVKKQSAGELRLHKDISELNLPKSCTMQFPNGKDDLMNFEVLIRPDDGYYLGGAFLFSFNVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFTEPNYEDPLNHDAAAVLRDNPKMFESNVRRAMSGGYVGQTFFPRCM*