Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0798810 | sp|Q9SDY5|RCE1_ARATH | 85.870 | 184 | 25 | 1 | 1 | 183 | 1 | 184 | 1.88e-119 | 338 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0798810 | G7KC51 | 100.000 | 183 | 0 | 0 | 1 | 183 | 4 | 186 | 1.02e-134 | 383 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000490 | Msa0798810 | 0.804580 | 2.017652e-49 | -8.615850e-47 |
Msa0005000 | Msa0798810 | 0.809472 | 1.860753e-50 | -8.615850e-47 |
Msa0022750 | Msa0798810 | 0.802518 | 5.400045e-49 | -8.615850e-47 |
Msa0030280 | Msa0798810 | -0.802274 | 6.063606e-49 | -8.615850e-47 |
Msa0069200 | Msa0798810 | 0.811750 | 5.987960e-51 | -8.615850e-47 |
Msa0073700 | Msa0798810 | -0.803292 | 3.737073e-49 | -8.615850e-47 |
Msa0094010 | Msa0798810 | -0.809785 | 1.593329e-50 | -8.615850e-47 |
Msa0098390 | Msa0798810 | 0.809744 | 1.626459e-50 | -8.615850e-47 |
Msa0119320 | Msa0798810 | -0.820854 | 5.505441e-53 | -8.615850e-47 |
Msa0120010 | Msa0798810 | 0.807068 | 6.055846e-50 | -8.615850e-47 |
Msa0120020 | Msa0798810 | 0.807594 | 4.683578e-50 | -8.615850e-47 |
Msa0607290 | Msa0798810 | 0.807219 | 5.625649e-50 | -8.615850e-47 |
Msa0609970 | Msa0798810 | -0.809629 | 1.721383e-50 | -8.615850e-47 |
Msa0617770 | Msa0798810 | 0.821468 | 3.973239e-53 | -8.615850e-47 |
Msa0625790 | Msa0798810 | -0.816337 | 5.824878e-52 | -8.615850e-47 |
Msa0648240 | Msa0798810 | 0.822000 | 2.993746e-53 | -8.615850e-47 |
Msa0664760 | Msa0798810 | -0.810300 | 1.234727e-50 | -8.615850e-47 |
Msa0687230 | Msa0798810 | -0.803857 | 2.853267e-49 | -8.615850e-47 |
Msa0716420 | Msa0798810 | 0.835823 | 1.340366e-56 | -8.615850e-47 |
Msa0735620 | Msa0798810 | 0.829030 | 6.465452e-55 | -8.615850e-47 |
Msa0737400 | Msa0798810 | 0.825160 | 5.454835e-54 | -8.615850e-47 |
Msa0742640 | Msa0798810 | 0.820782 | 5.718756e-53 | -8.615850e-47 |
Msa0747720 | Msa0798810 | 0.804294 | 2.314399e-49 | -8.615850e-47 |
Msa0757450 | Msa0798810 | 0.897570 | 1.237464e-76 | -8.615850e-47 |
Msa0757500 | Msa0798810 | 0.873834 | 1.081430e-67 | -8.615850e-47 |
Msa0777570 | Msa0798810 | 0.810632 | 1.046709e-50 | -8.615850e-47 |
Msa0798810 | Msa0799010 | 0.845952 | 2.945609e-59 | -8.615850e-47 |
Msa0798810 | Msa0814630 | 0.866693 | 2.366230e-65 | -8.615850e-47 |
Msa0798810 | Msa0837350 | 0.870680 | 1.215002e-66 | -8.615850e-47 |
Msa0798810 | Msa0855160 | 0.858166 | 9.925359e-63 | -8.615850e-47 |
Msa0798810 | Msa0862800 | 0.814410 | 1.562578e-51 | -8.615850e-47 |
Msa0798810 | Msa0869010 | -0.830470 | 2.884868e-55 | -8.615850e-47 |
Msa0798810 | Msa0905990 | -0.800031 | 1.743766e-48 | -8.615850e-47 |
Msa0798810 | Msa0947530 | 0.823650 | 1.235901e-53 | -8.615850e-47 |
Msa0798810 | Msa0976330 | -0.806741 | 7.100761e-50 | -8.615850e-47 |
Msa0798810 | Msa1002600 | 0.850312 | 1.841745e-60 | -8.615850e-47 |
Msa0798810 | Msa1022970 | -0.802376 | 5.777288e-49 | -8.615850e-47 |
Msa0798810 | Msa1023170 | 0.824255 | 8.910387e-54 | -8.615850e-47 |
Msa0798810 | Msa1087510 | 0.820963 | 5.194924e-53 | -8.615850e-47 |
Msa0798810 | Msa1097230 | -0.813592 | 2.368094e-51 | -8.615850e-47 |
Msa0798810 | Msa1126120 | 0.818443 | 1.955047e-52 | -8.615850e-47 |
Msa0798810 | Msa1146230 | -0.802633 | 5.115185e-49 | -8.615850e-47 |
Msa0798810 | Msa1173900 | -0.838224 | 3.265295e-57 | -8.615850e-47 |
Msa0798810 | Msa1192850 | -0.818418 | 1.981103e-52 | -8.615850e-47 |
Msa0798810 | Msa1204100 | 0.817490 | 3.210545e-52 | -8.615850e-47 |
Msa0798810 | Msa1210660 | 0.807692 | 4.463908e-50 | -8.615850e-47 |
Msa0798810 | Msa1211050 | 0.826228 | 3.044349e-54 | -8.615850e-47 |
Msa0798810 | Msa1223330 | -0.824769 | 6.744430e-54 | -8.615850e-47 |
Msa0798810 | Msa1223810 | 0.808885 | 2.485766e-50 | -8.615850e-47 |
Msa0798810 | Msa1224830 | -0.801008 | 1.102443e-48 | -8.615850e-47 |
Msa0798810 | Msa1246530 | 0.815250 | 1.017726e-51 | -8.615850e-47 |
Msa0798810 | Msa1253810 | -0.803977 | 2.693857e-49 | -8.615850e-47 |
Msa0798810 | Msa1293480 | 0.806609 | 7.569643e-50 | -8.615850e-47 |
Msa0798810 | Msa1296460 | 0.834730 | 2.530810e-56 | -8.615850e-47 |
Msa0798810 | Msa1323990 | -0.812087 | 5.058291e-51 | -8.615850e-47 |
Msa0798810 | Msa1327490 | -0.829760 | 4.299438e-55 | -8.615850e-47 |
Msa0798810 | Msa1329050 | 0.822126 | 2.799140e-53 | -8.615850e-47 |
Msa0798810 | Msa1329450 | -0.811911 | 5.525072e-51 | -8.615850e-47 |
Msa0798810 | Msa1333970 | -0.814705 | 1.344690e-51 | -8.615850e-47 |
Msa0798810 | Msa1438450 | -0.814714 | 1.338626e-51 | -8.615850e-47 |
Msa0138970 | Msa0798810 | 0.818191 | 2.229434e-52 | -8.615850e-47 |
Msa0140520 | Msa0798810 | 0.820804 | 5.650526e-53 | -8.615850e-47 |
Msa0158130 | Msa0798810 | 0.804973 | 1.670241e-49 | -8.615850e-47 |
Msa0182280 | Msa0798810 | -0.801242 | 9.874721e-49 | -8.615850e-47 |
Msa0212750 | Msa0798810 | 0.819896 | 9.126686e-53 | -8.615850e-47 |
Msa0219250 | Msa0798810 | 0.813888 | 2.038091e-51 | -8.615850e-47 |
Msa0227310 | Msa0798810 | 0.808487 | 3.023987e-50 | -8.615850e-47 |
Msa0419640 | Msa0798810 | 0.827161 | 1.822825e-54 | -8.615850e-47 |
Msa0431770 | Msa0798810 | -0.811328 | 7.395718e-51 | -8.615850e-47 |
Msa0469910 | Msa0798810 | 0.820399 | 7.002088e-53 | -8.615850e-47 |
Msa0258880 | Msa0798810 | 0.810294 | 1.237971e-50 | -8.615850e-47 |
Msa0277420 | Msa0798810 | -0.807794 | 4.246564e-50 | -8.615850e-47 |
Msa0294560 | Msa0798810 | 0.806750 | 7.067853e-50 | -8.615850e-47 |
Msa0295000 | Msa0798810 | 0.810807 | 9.593260e-51 | -8.615850e-47 |
Msa0296980 | Msa0798810 | 0.800782 | 1.226474e-48 | -8.615850e-47 |
Msa0554180 | Msa0798810 | 0.840044 | 1.102040e-57 | -8.615850e-47 |
Msa0554380 | Msa0798810 | 0.826753 | 2.281947e-54 | -8.615850e-47 |
Msa0578090 | Msa0798810 | -0.808713 | 2.704960e-50 | -8.615850e-47 |
Msa0585650 | Msa0798810 | 0.809425 | 1.904105e-50 | -8.615850e-47 |
Msa0586850 | Msa0798810 | -0.815687 | 8.135964e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0798810 | MtrunA17_Chr5g0403591 | 100.000 | 183 | 0 | 0 | 1 | 183 | 1 | 183 | 2.40e-138 | 383 |
Msa0798810 | MtrunA17_Chr4g0037011 | 38.971 | 136 | 80 | 2 | 33 | 166 | 5 | 139 | 1.82e-28 | 103 |
Msa0798810 | MtrunA17_Chr1g0154011 | 36.765 | 136 | 83 | 2 | 33 | 166 | 5 | 139 | 4.06e-27 | 100 |
Msa0798810 | MtrunA17_Chr5g0432831 | 36.765 | 136 | 83 | 2 | 33 | 166 | 5 | 139 | 2.48e-26 | 98.2 |
Msa0798810 | MtrunA17_Chr3g0108261 | 36.765 | 136 | 83 | 2 | 33 | 166 | 5 | 139 | 2.64e-26 | 98.2 |
Msa0798810 | MtrunA17_Chr7g0275361 | 36.029 | 136 | 84 | 2 | 33 | 166 | 5 | 139 | 5.68e-26 | 97.1 |
Msa0798810 | MtrunA17_Chr8g0369311 | 35.766 | 137 | 83 | 3 | 33 | 166 | 61 | 195 | 2.94e-25 | 97.1 |
Msa0798810 | MtrunA17_Chr2g0316201 | 40.000 | 105 | 62 | 1 | 54 | 157 | 30 | 134 | 1.39e-21 | 85.9 |
Msa0798810 | MtrunA17_Chr2g0316211 | 40.000 | 105 | 62 | 1 | 54 | 157 | 30 | 134 | 2.09e-21 | 85.5 |
Msa0798810 | MtrunA17_Chr4g0060351 | 27.778 | 144 | 103 | 1 | 33 | 175 | 8 | 151 | 5.21e-21 | 84.3 |
Msa0798810 | MtrunA17_Chr8g0362321 | 26.389 | 144 | 105 | 1 | 33 | 175 | 8 | 151 | 2.27e-20 | 82.8 |
Msa0798810 | MtrunA17_Chr4g0038891 | 32.090 | 134 | 87 | 2 | 33 | 162 | 36 | 169 | 4.57e-18 | 77.4 |
Msa0798810 | MtrunA17_Chr5g0396451 | 38.824 | 85 | 52 | 0 | 69 | 153 | 73 | 157 | 6.61e-18 | 77.0 |
Msa0798810 | MtrunA17_Chr3g0139901 | 30.075 | 133 | 89 | 3 | 29 | 157 | 3 | 135 | 1.12e-17 | 75.9 |
Msa0798810 | MtrunA17_Chr1g0199951 | 33.962 | 106 | 70 | 0 | 51 | 156 | 65 | 170 | 2.97e-17 | 75.5 |
Msa0798810 | MtrunA17_Chr4g0059291 | 33.043 | 115 | 74 | 3 | 56 | 167 | 27 | 141 | 6.59e-17 | 74.7 |
Msa0798810 | MtrunA17_Chr4g0031181 | 30.833 | 120 | 70 | 1 | 63 | 169 | 40 | 159 | 1.13e-15 | 70.9 |
Msa0798810 | MtrunA17_Chr8g0348701 | 34.615 | 104 | 64 | 4 | 67 | 167 | 39 | 141 | 9.64e-15 | 68.9 |
Msa0798810 | MtrunA17_Chr8g0387131 | 25.850 | 147 | 98 | 3 | 23 | 167 | 4 | 141 | 1.79e-14 | 68.2 |
Msa0798810 | MtrunA17_Chr3g0131871 | 32.743 | 113 | 74 | 2 | 56 | 166 | 30 | 142 | 2.28e-14 | 68.2 |
Msa0798810 | MtrunA17_Chr2g0328001 | 30.000 | 120 | 71 | 1 | 63 | 169 | 40 | 159 | 4.35e-14 | 66.6 |
Msa0798810 | MtrunA17_Chr4g0053191 | 29.915 | 117 | 79 | 2 | 53 | 166 | 33 | 149 | 1.95e-13 | 64.7 |
Msa0798810 | MtrunA17_Chr8g0378601 | 30.709 | 127 | 82 | 3 | 23 | 147 | 16 | 138 | 3.78e-13 | 64.3 |
Msa0798810 | MtrunA17_Chr7g0254701 | 33.684 | 95 | 63 | 0 | 72 | 166 | 54 | 148 | 1.15e-12 | 64.3 |
Msa0798810 | MtrunA17_Chr5g0401831 | 28.571 | 119 | 82 | 2 | 52 | 167 | 32 | 150 | 1.26e-12 | 62.8 |
Msa0798810 | MtrunA17_Chr2g0313441 | 87.500 | 32 | 4 | 0 | 5 | 36 | 23 | 54 | 2.99e-12 | 58.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0798810 | AT4G36800.2 | 85.870 | 184 | 25 | 1 | 1 | 183 | 1 | 184 | 1.91e-120 | 338 |
Msa0798810 | AT4G36800.1 | 85.870 | 184 | 25 | 1 | 1 | 183 | 1 | 184 | 1.91e-120 | 338 |
Msa0798810 | AT2G18600.1 | 83.243 | 185 | 29 | 1 | 1 | 183 | 1 | 185 | 1.67e-113 | 320 |
Msa0798810 | AT2G18600.2 | 83.243 | 185 | 29 | 1 | 1 | 183 | 1 | 185 | 1.67e-113 | 320 |
Msa0798810 | AT5G56150.1 | 36.029 | 136 | 84 | 2 | 33 | 166 | 5 | 139 | 1.12e-26 | 99.4 |
Msa0798810 | AT3G08690.2 | 37.500 | 136 | 82 | 2 | 33 | 166 | 5 | 139 | 3.14e-26 | 98.2 |
Msa0798810 | AT3G08690.1 | 37.500 | 136 | 82 | 2 | 33 | 166 | 5 | 139 | 3.14e-26 | 98.2 |
Msa0798810 | AT4G27960.1 | 36.765 | 136 | 83 | 2 | 33 | 166 | 5 | 139 | 3.35e-26 | 98.2 |
Msa0798810 | AT2G16740.1 | 36.765 | 136 | 83 | 2 | 33 | 166 | 5 | 139 | 3.50e-26 | 98.2 |
Msa0798810 | AT5G41700.4 | 35.294 | 136 | 86 | 1 | 33 | 166 | 5 | 140 | 3.91e-26 | 97.8 |
Msa0798810 | AT1G64230.2 | 36.029 | 136 | 84 | 2 | 33 | 166 | 5 | 139 | 5.62e-26 | 97.4 |
Msa0798810 | AT1G64230.1 | 36.029 | 136 | 84 | 2 | 33 | 166 | 5 | 139 | 5.62e-26 | 97.4 |
Msa0798810 | AT5G53300.2 | 36.029 | 136 | 84 | 2 | 33 | 166 | 5 | 139 | 9.93e-26 | 97.1 |
Msa0798810 | AT5G53300.4 | 36.029 | 136 | 84 | 2 | 33 | 166 | 5 | 139 | 9.93e-26 | 97.1 |
Msa0798810 | AT5G53300.1 | 36.029 | 136 | 84 | 2 | 33 | 166 | 5 | 139 | 9.93e-26 | 97.1 |
Msa0798810 | AT4G27960.2 | 36.765 | 136 | 83 | 2 | 33 | 166 | 35 | 169 | 1.83e-25 | 97.1 |
Msa0798810 | AT1G64230.3 | 34.028 | 144 | 85 | 2 | 33 | 166 | 5 | 148 | 2.91e-25 | 95.9 |
Msa0798810 | AT5G41700.5 | 35.294 | 136 | 85 | 2 | 33 | 166 | 5 | 139 | 6.46e-25 | 94.7 |
Msa0798810 | AT5G41700.2 | 35.294 | 136 | 85 | 2 | 33 | 166 | 5 | 139 | 6.46e-25 | 94.7 |
Msa0798810 | AT5G41700.1 | 35.294 | 136 | 85 | 2 | 33 | 166 | 5 | 139 | 6.46e-25 | 94.7 |
Msa0798810 | AT3G08700.2 | 34.783 | 138 | 86 | 3 | 33 | 167 | 5 | 141 | 1.20e-24 | 94.0 |
Msa0798810 | AT3G08700.1 | 34.783 | 138 | 86 | 3 | 33 | 167 | 5 | 141 | 1.20e-24 | 94.0 |
Msa0798810 | AT1G64230.5 | 38.393 | 112 | 68 | 1 | 56 | 166 | 70 | 181 | 2.72e-24 | 94.4 |
Msa0798810 | AT1G64230.4 | 38.393 | 112 | 68 | 1 | 56 | 166 | 70 | 181 | 2.72e-24 | 94.4 |
Msa0798810 | AT5G56150.2 | 39.815 | 108 | 61 | 3 | 33 | 138 | 5 | 110 | 1.34e-21 | 85.1 |
Msa0798810 | AT1G78870.2 | 40.000 | 105 | 62 | 1 | 54 | 157 | 30 | 134 | 2.18e-21 | 85.9 |
Msa0798810 | AT1G16890.2 | 39.048 | 105 | 63 | 1 | 54 | 157 | 30 | 134 | 7.45e-21 | 84.3 |
Msa0798810 | AT1G16890.3 | 39.048 | 105 | 63 | 1 | 54 | 157 | 39 | 143 | 1.20e-20 | 84.3 |
Msa0798810 | AT1G16890.1 | 41.837 | 98 | 56 | 1 | 61 | 157 | 4 | 101 | 1.50e-20 | 82.8 |
Msa0798810 | AT1G78870.4 | 41.837 | 98 | 56 | 1 | 61 | 157 | 4 | 101 | 1.65e-20 | 82.8 |
Msa0798810 | AT2G02760.1 | 27.083 | 144 | 104 | 1 | 33 | 175 | 8 | 151 | 1.73e-20 | 83.6 |
Msa0798810 | AT2G02760.2 | 27.083 | 144 | 104 | 1 | 33 | 175 | 8 | 151 | 1.73e-20 | 83.6 |
Msa0798810 | AT2G02760.4 | 27.083 | 144 | 104 | 1 | 33 | 175 | 8 | 151 | 1.73e-20 | 83.6 |
Msa0798810 | AT2G02760.3 | 27.083 | 144 | 104 | 1 | 33 | 175 | 8 | 151 | 1.73e-20 | 83.6 |
Msa0798810 | AT1G14400.1 | 27.083 | 144 | 104 | 1 | 33 | 175 | 8 | 151 | 6.48e-20 | 82.0 |
Msa0798810 | AT1G14400.2 | 27.083 | 144 | 104 | 1 | 33 | 175 | 8 | 151 | 6.48e-20 | 82.0 |
Msa0798810 | AT5G53300.3 | 37.500 | 104 | 62 | 2 | 33 | 134 | 5 | 107 | 6.25e-19 | 78.2 |
Msa0798810 | AT1G78870.1 | 41.414 | 99 | 56 | 2 | 61 | 157 | 4 | 102 | 9.39e-19 | 78.2 |
Msa0798810 | AT5G62540.1 | 27.273 | 143 | 103 | 1 | 33 | 174 | 8 | 150 | 1.67e-18 | 78.2 |
Msa0798810 | AT3G20060.2 | 37.500 | 88 | 55 | 0 | 69 | 156 | 32 | 119 | 6.22e-18 | 76.3 |
Msa0798810 | AT3G20060.1 | 37.500 | 88 | 55 | 0 | 69 | 156 | 77 | 164 | 9.82e-18 | 77.0 |
Msa0798810 | AT3G13550.1 | 32.061 | 131 | 86 | 2 | 17 | 145 | 24 | 153 | 1.02e-17 | 77.0 |
Msa0798810 | AT3G13550.2 | 32.540 | 126 | 82 | 2 | 17 | 140 | 24 | 148 | 1.20e-17 | 76.6 |
Msa0798810 | AT5G41700.3 | 38.384 | 99 | 58 | 2 | 33 | 129 | 5 | 102 | 1.51e-17 | 75.5 |
Msa0798810 | AT5G25760.1 | 30.827 | 133 | 88 | 3 | 29 | 157 | 3 | 135 | 1.66e-17 | 75.9 |
Msa0798810 | AT5G25760.2 | 30.827 | 133 | 88 | 3 | 29 | 157 | 3 | 135 | 1.66e-17 | 75.9 |
Msa0798810 | AT1G36340.2 | 34.821 | 112 | 72 | 1 | 56 | 166 | 34 | 145 | 2.25e-17 | 75.5 |
Msa0798810 | AT1G36340.1 | 34.821 | 112 | 72 | 1 | 56 | 166 | 34 | 145 | 2.25e-17 | 75.5 |
Msa0798810 | AT5G41340.1 | 38.462 | 104 | 60 | 4 | 67 | 167 | 39 | 141 | 1.10e-16 | 74.3 |
Msa0798810 | AT1G50490.1 | 36.364 | 88 | 56 | 0 | 69 | 156 | 76 | 163 | 1.12e-16 | 74.3 |
Msa0798810 | AT1G63800.1 | 37.500 | 104 | 61 | 4 | 67 | 167 | 39 | 141 | 1.80e-16 | 73.9 |
Msa0798810 | AT1G63800.2 | 37.500 | 104 | 61 | 4 | 67 | 167 | 24 | 126 | 2.39e-16 | 73.2 |
Msa0798810 | AT5G41340.2 | 36.000 | 100 | 62 | 2 | 70 | 167 | 7 | 106 | 5.28e-16 | 71.6 |
Msa0798810 | AT1G78870.3 | 43.590 | 78 | 43 | 1 | 54 | 130 | 30 | 107 | 5.67e-16 | 70.5 |
Msa0798810 | AT3G24515.1 | 33.607 | 122 | 73 | 2 | 53 | 166 | 36 | 157 | 1.00e-15 | 74.3 |
Msa0798810 | AT5G50870.1 | 35.417 | 96 | 61 | 1 | 72 | 166 | 47 | 142 | 1.13e-15 | 72.0 |
Msa0798810 | AT2G46030.5 | 34.783 | 115 | 72 | 3 | 56 | 167 | 27 | 141 | 3.24e-15 | 70.5 |
Msa0798810 | AT2G46030.1 | 34.783 | 115 | 72 | 3 | 56 | 167 | 27 | 141 | 3.24e-15 | 70.5 |
Msa0798810 | AT3G24515.3 | 35.577 | 104 | 63 | 1 | 67 | 166 | 79 | 182 | 4.84e-15 | 72.4 |
Msa0798810 | AT2G46030.4 | 34.783 | 115 | 72 | 3 | 56 | 167 | 30 | 144 | 6.02e-15 | 69.7 |
Msa0798810 | AT2G46030.2 | 34.783 | 115 | 72 | 3 | 56 | 167 | 30 | 144 | 6.02e-15 | 69.7 |
Msa0798810 | AT2G46030.3 | 35.088 | 114 | 71 | 3 | 56 | 166 | 99 | 212 | 7.35e-15 | 70.9 |
Msa0798810 | AT5G50870.2 | 38.667 | 75 | 45 | 1 | 72 | 145 | 47 | 121 | 5.05e-14 | 67.8 |
Msa0798810 | AT3G57870.1 | 30.769 | 117 | 78 | 2 | 53 | 166 | 34 | 150 | 8.80e-14 | 66.2 |
Msa0798810 | AT5G59300.1 | 29.167 | 120 | 72 | 1 | 63 | 169 | 40 | 159 | 4.92e-13 | 64.3 |
Msa0798810 | AT3G55380.1 | 29.412 | 119 | 71 | 1 | 64 | 169 | 42 | 160 | 5.07e-13 | 64.3 |
Msa0798810 | AT3G46460.1 | 28.333 | 120 | 73 | 1 | 63 | 169 | 40 | 159 | 5.87e-13 | 63.9 |
Msa0798810 | AT5G05080.2 | 33.684 | 95 | 63 | 0 | 72 | 166 | 54 | 148 | 8.94e-13 | 65.1 |
Msa0798810 | AT5G05080.3 | 33.684 | 95 | 63 | 0 | 72 | 166 | 54 | 148 | 8.94e-13 | 65.1 |
Msa0798810 | AT5G05080.1 | 33.684 | 95 | 63 | 0 | 72 | 166 | 54 | 148 | 8.94e-13 | 65.1 |
Msa0798810 | AT5G05080.4 | 33.684 | 95 | 63 | 0 | 72 | 166 | 54 | 148 | 8.94e-13 | 65.1 |
Msa0798810 | AT3G46460.3 | 27.523 | 109 | 66 | 1 | 74 | 169 | 9 | 117 | 8.33e-11 | 57.4 |
Msa0798810 | AT3G46460.2 | 27.523 | 109 | 66 | 1 | 74 | 169 | 9 | 117 | 8.33e-11 | 57.4 |
Find 65 sgRNAs with CRISPR-Local
Find 253 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCCTTCCAAGTCAATATT+TGG | 0.142980 | 5_3:-11761731 | None:intergenic |
TATTCTAAACAATCAGAAAA+TGG | 0.229500 | 5_3:+11762287 | Msa0798810:three_prime_UTR |
TTCAGGGGATCCTCGTAATT+TGG | 0.241596 | 5_3:-11761935 | None:intergenic |
CAGCAGCGGCATCATGATTC+AGG | 0.258270 | 5_3:-11761952 | None:intergenic |
ACATTAGATTCAAACATCTT+TGG | 0.268686 | 5_3:-11761989 | None:intergenic |
GATGTAACTTATGTGCTTTA+TGG | 0.270626 | 5_3:+11762251 | Msa0798810:three_prime_UTR |
CCAGCACTTTGCTTCTTAAC+AGG | 0.282485 | 5_3:-11759473 | None:intergenic |
AGATGACAGTGTTTATATTA+AGG | 0.283684 | 5_3:-11761793 | None:intergenic |
CTTAACAGGTACTCCATTAC+TGG | 0.300967 | 5_3:-11759459 | None:intergenic |
TAGATGCGTTTGGTGGTCTA+AGG | 0.327340 | 5_3:-11762206 | None:intergenic |
ACATCAACATTCCAATTGTT+TGG | 0.337427 | 5_3:-11762233 | None:intergenic |
AATATAAACACTGTCATCTA+TGG | 0.349971 | 5_3:+11761797 | Msa0798810:CDS |
TTCAATCTTCTCAATCAATC+AGG | 0.362380 | 5_3:+11758514 | Msa0798810:five_prime_UTR |
TTTGTCTTGCACTTCACCTT+GGG | 0.370105 | 5_3:-11761583 | None:intergenic |
CATTGATAATATATTTCAAA+AGG | 0.384723 | 5_3:-11762094 | None:intergenic |
TTTCTTGGTGGAGGAGCATC+AGG | 0.389923 | 5_3:+11762177 | Msa0798810:three_prime_UTR |
GGGTGCTTCATGTGGATAGA+TGG | 0.399776 | 5_3:-11761563 | None:intergenic |
GGCAATGTCTGGTGGGTATG+TGG | 0.402485 | 5_3:+11762018 | Msa0798810:CDS |
CTTTGTCTTGCACTTCACCT+TGG | 0.407733 | 5_3:-11761584 | None:intergenic |
CATCAGGTCATCTTTGCCAT+TGG | 0.416464 | 5_3:-11761219 | None:intergenic |
ATCAGGTCATCTTTGCCATT+GGG | 0.429309 | 5_3:-11761218 | None:intergenic |
GCATCTAAAAGCCAAACAAT+TGG | 0.433067 | 5_3:+11762222 | Msa0798810:three_prime_UTR |
TCAAAACTTCGAAGTTCATC+AGG | 0.454455 | 5_3:-11761235 | None:intergenic |
AATTGCATGGTGCAAGACTT+TGG | 0.456157 | 5_3:-11761194 | None:intergenic |
ATTCTAAACAATCAGAAAAT+GGG | 0.468228 | 5_3:+11762288 | Msa0798810:three_prime_UTR |
ATTGATAATATATTTCAAAA+GGG | 0.474553 | 5_3:-11762093 | None:intergenic |
TACAAGTAATATCCATCATC+GGG | 0.483744 | 5_3:-11761263 | None:intergenic |
GAGCATGGTTTACATACAGC+GGG | 0.483927 | 5_3:-11762056 | None:intergenic |
GATTAAACTATTTAAAGTAA+AGG | 0.497569 | 5_3:+11759409 | Msa0798810:CDS |
TTCACCTTGGGTGCTTCATG+TGG | 0.501905 | 5_3:-11761571 | None:intergenic |
CATCCAAATATTGACTTGGA+AGG | 0.507990 | 5_3:+11761728 | Msa0798810:CDS |
GCAATGTCTGGTGGGTATGT+GGG | 0.513890 | 5_3:+11762019 | Msa0798810:CDS |
ACAGTGTTTATATTAAGGAC+AGG | 0.514717 | 5_3:-11761788 | None:intergenic |
TCAACATCTTAAGAGAAGAC+TGG | 0.523814 | 5_3:+11761762 | Msa0798810:CDS |
GGCATGGAAGTTGTTGAGCA+TGG | 0.530108 | 5_3:-11762071 | None:intergenic |
TTACAAGTAATATCCATCAT+CGG | 0.536160 | 5_3:-11761264 | None:intergenic |
TGGCTTGTATCATCTCTTCA+CGG | 0.539377 | 5_3:+11761817 | Msa0798810:CDS |
AGCAGCGGCATCATGATTCA+GGG | 0.539634 | 5_3:-11761951 | None:intergenic |
CTACCATCCAAATATTGACT+TGG | 0.541780 | 5_3:+11761724 | Msa0798810:CDS |
AATATATTTCAAAAGGGGCA+TGG | 0.542808 | 5_3:-11762087 | None:intergenic |
ATAGATGGGAGACACATTGA+AGG | 0.544925 | 5_3:-11761548 | None:intergenic |
AAATATATTATCAATGCCCA+TGG | 0.546894 | 5_3:+11762101 | Msa0798810:three_prime_UTR |
CTTCCAAGTCAATATTTGGA+TGG | 0.548559 | 5_3:-11761727 | None:intergenic |
CAAGCTGAAAATGCCAGTAA+TGG | 0.548896 | 5_3:+11759446 | Msa0798810:CDS |
TTGATAATATATTTCAAAAG+GGG | 0.567269 | 5_3:-11762092 | None:intergenic |
TTTGCCATTGGGAAATTGCA+TGG | 0.574210 | 5_3:-11761207 | None:intergenic |
CCTGTTAAGAAGCAAAGTGC+TGG | 0.575364 | 5_3:+11759473 | Msa0798810:CDS |
AATGTGAGGAGGGCAATGTC+TGG | 0.586922 | 5_3:+11762007 | Msa0798810:CDS |
GGTGCTTCATGTGGATAGAT+GGG | 0.590678 | 5_3:-11761562 | None:intergenic |
GTGAGGAGGGCAATGTCTGG+TGG | 0.597624 | 5_3:+11762010 | Msa0798810:CDS |
GTTTGAATCTAATGTGAGGA+GGG | 0.602029 | 5_3:+11761997 | Msa0798810:CDS |
TGCACCATGCAATTTCCCAA+TGG | 0.605830 | 5_3:+11761203 | Msa0798810:CDS |
CTATCCACATGAAGCACCCA+AGG | 0.621344 | 5_3:+11761567 | Msa0798810:CDS |
CAATCAGAAAATGGGTTCAG+CGG | 0.622698 | 5_3:+11762296 | Msa0798810:three_prime_UTR |
GGCGAGTTGCGTCTTCACAA+AGG | 0.628980 | 5_3:+11759494 | Msa0798810:CDS |
TGAGGAGGGCAATGTCTGGT+GGG | 0.629398 | 5_3:+11762011 | Msa0798810:CDS |
CAAGGTGAAGTGCAAGACAA+AGG | 0.630470 | 5_3:+11761585 | Msa0798810:CDS |
TGTTTGAATCTAATGTGAGG+AGG | 0.637414 | 5_3:+11761996 | Msa0798810:CDS |
GCAGCGGCATCATGATTCAG+GGG | 0.671229 | 5_3:-11761950 | None:intergenic |
TGAGCATGGTTTACATACAG+CGG | 0.671953 | 5_3:-11762057 | None:intergenic |
GCATGGTTTACATACAGCGG+GGG | 0.678401 | 5_3:-11762054 | None:intergenic |
AGATGTTTGAATCTAATGTG+AGG | 0.682109 | 5_3:+11761993 | Msa0798810:CDS |
TGTGCAGGAGCCAAATTACG+AGG | 0.709133 | 5_3:+11761925 | Msa0798810:intron |
ATTATCTCTCAAGACAGCAG+CGG | 0.713092 | 5_3:-11761966 | None:intergenic |
AGCATGGTTTACATACAGCG+GGG | 0.717629 | 5_3:-11762055 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CTACTTTTTTTTTTTTTTAA+GGG | + | chr5_3:11759071-11759090 | Msa0798810:intron | 10.0% |
!! | AAGAAAGAAATATATAAATA+GGG | - | chr5_3:11760103-11760122 | None:intergenic | 10.0% |
!! | AAAGAAAGAAATATATAAAT+AGG | - | chr5_3:11760104-11760123 | None:intergenic | 10.0% |
!!! | ATGTTGTTTTATTATTTTTT+CGG | + | chr5_3:11760430-11760449 | Msa0798810:intron | 10.0% |
!!! | ATTGATAATATATTTCAAAA+GGG | - | chr5_3:11762096-11762115 | None:intergenic | 10.0% |
!! | TAAAGGTAAATTATGAATTA+GGG | - | chr5_3:11758651-11758670 | None:intergenic | 15.0% |
!! | ATAAAGGTAAATTATGAATT+AGG | - | chr5_3:11758652-11758671 | None:intergenic | 15.0% |
!! | TTTGATATCATTATTCATTA+TGG | + | chr5_3:11758891-11758910 | Msa0798810:intron | 15.0% |
!! | TTGATATCATTATTCATTAT+GGG | + | chr5_3:11758892-11758911 | Msa0798810:intron | 15.0% |
!!! | GCTACTTTTTTTTTTTTTTA+AGG | + | chr5_3:11759070-11759089 | Msa0798810:intron | 15.0% |
!!! | GATTAAACTATTTAAAGTAA+AGG | + | chr5_3:11759409-11759428 | Msa0798810:CDS | 15.0% |
!! | AAGTAAACAATTTAATAAGA+AGG | - | chr5_3:11759523-11759542 | None:intergenic | 15.0% |
!! | ATATTTGTGTAATTTATTTC+TGG | - | chr5_3:11759737-11759756 | None:intergenic | 15.0% |
!! | AATAAATTACACAAATATCT+TGG | + | chr5_3:11759739-11759758 | Msa0798810:intron | 15.0% |
!! | AATCACTAATAAAATTACTA+AGG | - | chr5_3:11760904-11760923 | None:intergenic | 15.0% |
!! | AAAATAACAAAAAGATAAAG+TGG | - | chr5_3:11761298-11761317 | None:intergenic | 15.0% |
!!! | AAAATTGATTCTTGTTTTTA+AGG | + | chr5_3:11761337-11761356 | Msa0798810:intron | 15.0% |
!!! | TTTATATCATGTTATTTGTT+TGG | + | chr5_3:11761381-11761400 | Msa0798810:intron | 15.0% |
!!! | TTGATAATATATTTCAAAAG+GGG | - | chr5_3:11762095-11762114 | None:intergenic | 15.0% |
!!! | CATTGATAATATATTTCAAA+AGG | - | chr5_3:11762097-11762116 | None:intergenic | 15.0% |
!!! | AAATAAATTTTACAAACCAT+GGG | - | chr5_3:11762120-11762139 | None:intergenic | 15.0% |
!! | GAATAATGATATCAAAGAAT+CGG | - | chr5_3:11758887-11758906 | None:intergenic | 20.0% |
!!! | ATATTTGTTGCTTTTGAAAA+AGG | + | chr5_3:11758977-11758996 | Msa0798810:intron | 20.0% |
!!! | CTAAACATACAATTTTTTGT+TGG | + | chr5_3:11759237-11759256 | Msa0798810:intron | 20.0% |
!!! | TAGAAGTTTTTACTTGATAT+AGG | + | chr5_3:11759814-11759833 | Msa0798810:intron | 20.0% |
!! | ATAATCTACATAATGTAGTT+AGG | + | chr5_3:11759852-11759871 | Msa0798810:intron | 20.0% |
!! | ATATATAAATAGGGATGAAA+AGG | - | chr5_3:11760094-11760113 | None:intergenic | 20.0% |
!!! | ATTTTATGCAATGTTATTAG+AGG | - | chr5_3:11760384-11760403 | None:intergenic | 20.0% |
!! | TTGCATAAAATGAGTAAAAT+TGG | + | chr5_3:11760393-11760412 | Msa0798810:intron | 20.0% |
!! | TTAAATATTGTGTATTCTCA+CGG | + | chr5_3:11760634-11760653 | Msa0798810:intron | 20.0% |
!! | AACAGAAGAAAATCAAATAT+AGG | - | chr5_3:11760701-11760720 | None:intergenic | 20.0% |
!!! | TATTAGTGATTTTTCATGAA+AGG | + | chr5_3:11760913-11760932 | Msa0798810:intron | 20.0% |
!! | ACTTGTATAACAAAATAAAG+TGG | - | chr5_3:11761128-11761147 | None:intergenic | 20.0% |
!!! | CAAGAATCAATTTTAAAGTT+AGG | - | chr5_3:11761331-11761350 | None:intergenic | 20.0% |
!! | GCTAAATTAAATGTATAATC+TGG | + | chr5_3:11761423-11761442 | Msa0798810:intron | 20.0% |
!! | TAAAACAGAATATGAAAACA+AGG | - | chr5_3:11761663-11761682 | None:intergenic | 20.0% |
!!! | GAAATAAATTTTACAAACCA+TGG | - | chr5_3:11762121-11762140 | None:intergenic | 20.0% |
!! | TATTCTAAACAATCAGAAAA+TGG | + | chr5_3:11762287-11762306 | Msa0798810:three_prime_UTR | 20.0% |
!! | ATTCTAAACAATCAGAAAAT+GGG | + | chr5_3:11762288-11762307 | Msa0798810:three_prime_UTR | 20.0% |
! | TTTCAATTAGAGAGAGATAA+AGG | - | chr5_3:11758668-11758687 | None:intergenic | 25.0% |
! | CTCAATAAAAAAAACTAGCT+AGG | - | chr5_3:11758950-11758969 | None:intergenic | 25.0% |
!!! | CTAGCTAGTTTTTTTTATTG+AGG | + | chr5_3:11758948-11758967 | Msa0798810:intron | 25.0% |
! | TTGGATTAATGAACTAGATA+GGG | + | chr5_3:11759256-11759275 | Msa0798810:intron | 25.0% |
!!! | TTTTTGTTGTTCTTGTTGAA+AGG | + | chr5_3:11759296-11759315 | Msa0798810:intron | 25.0% |
! | TTCATTGTGTTAAATTTGTG+TGG | + | chr5_3:11759552-11759571 | Msa0798810:intron | 25.0% |
! | CAAACCAAAACATATATCTT+CGG | - | chr5_3:11759781-11759800 | None:intergenic | 25.0% |
! | AACTCTGGATATTTAATGAT+TGG | + | chr5_3:11760009-11760028 | Msa0798810:intron | 25.0% |
! | TAAGACTCGATGAAAAATAA+AGG | - | chr5_3:11760049-11760068 | None:intergenic | 25.0% |
! | TCTTGAATCAATTAACAATG+AGG | - | chr5_3:11760137-11760156 | None:intergenic | 25.0% |
! | AAATGAGTAAAATTGGACAA+AGG | + | chr5_3:11760400-11760419 | Msa0798810:intron | 25.0% |
! | TCATTCAACAATAAACTATC+TGG | - | chr5_3:11760606-11760625 | None:intergenic | 25.0% |
!!! | TATTTGATTTTCTTCTGTTC+TGG | + | chr5_3:11760702-11760721 | Msa0798810:intron | 25.0% |
! | AAAGAAAAAGAACAATCACA+TGG | - | chr5_3:11760802-11760821 | None:intergenic | 25.0% |
!! | TGATTGTTCTTTTTCTTTCT+TGG | + | chr5_3:11760804-11760823 | Msa0798810:intron | 25.0% |
!! | GATTGTTCTTTTTCTTTCTT+GGG | + | chr5_3:11760805-11760824 | Msa0798810:intron | 25.0% |
! | AAGCCTTCATTAAATATACT+GGG | - | chr5_3:11760845-11760864 | None:intergenic | 25.0% |
! | AAAGCCTTCATTAAATATAC+TGG | - | chr5_3:11760846-11760865 | None:intergenic | 25.0% |
! | TGTATAACAAAATAAAGTGG+CGG | - | chr5_3:11761125-11761144 | None:intergenic | 25.0% |
! | TTACAAGTAATATCCATCAT+CGG | - | chr5_3:11761267-11761286 | None:intergenic | 25.0% |
! | AGATGACAGTGTTTATATTA+AGG | - | chr5_3:11761796-11761815 | None:intergenic | 25.0% |
! | AATATAAACACTGTCATCTA+TGG | + | chr5_3:11761797-11761816 | Msa0798810:CDS | 25.0% |
!!! | CTCTGTTTTTTAACATATCA+GGG | + | chr5_3:11761845-11761864 | Msa0798810:intron | 25.0% |
! | ACATTAGATTCAAACATCTT+TGG | - | chr5_3:11761992-11762011 | None:intergenic | 25.0% |
! | AAATATATTATCAATGCCCA+TGG | + | chr5_3:11762101-11762120 | Msa0798810:three_prime_UTR | 25.0% |
TTCAATCTTCTCAATCAATC+AGG | + | chr5_3:11758514-11758533 | Msa0798810:five_prime_UTR | 30.0% | |
GTAAATTATGAATTAGGGTG+AGG | - | chr5_3:11758646-11758665 | None:intergenic | 30.0% | |
! | TGATTTTGCAAAAGCTATGT+AGG | + | chr5_3:11759158-11759177 | Msa0798810:intron | 30.0% |
! | GATTTTGCAAAAGCTATGTA+GGG | + | chr5_3:11759159-11759178 | Msa0798810:intron | 30.0% |
TTGTATGTTTAGTATCACTG+CGG | - | chr5_3:11759229-11759248 | None:intergenic | 30.0% | |
GTTGGATTAATGAACTAGAT+AGG | + | chr5_3:11759255-11759274 | Msa0798810:intron | 30.0% | |
ATTAATGAACTAGATAGGGA+TGG | + | chr5_3:11759260-11759279 | Msa0798810:intron | 30.0% | |
TTAATGAACTAGATAGGGAT+GGG | + | chr5_3:11759261-11759280 | Msa0798810:intron | 30.0% | |
!!! | TTGTAGATGTTGTTTTTGCT+TGG | + | chr5_3:11759322-11759341 | Msa0798810:intron | 30.0% |
! | ACTACCGAAGATATATGTTT+TGG | + | chr5_3:11759774-11759793 | Msa0798810:intron | 30.0% |
AAATAAAGGAGGAAGAGAAT+GGG | - | chr5_3:11760035-11760054 | None:intergenic | 30.0% | |
AAAATAAAGGAGGAAGAGAA+TGG | - | chr5_3:11760036-11760055 | None:intergenic | 30.0% | |
TAAAATCCACCATAAGAGTA+TGG | - | chr5_3:11760336-11760355 | None:intergenic | 30.0% | |
!!! | ATACTCTTATGGTGGATTTT+AGG | + | chr5_3:11760335-11760354 | Msa0798810:intron | 30.0% |
TTTCCGTGAAAATTTACTGT+AGG | + | chr5_3:11760554-11760573 | Msa0798810:intron | 30.0% | |
GGTTATCACTTAACAAGTAT+AGG | - | chr5_3:11760764-11760783 | None:intergenic | 30.0% | |
! | TACTTGTTAAGTGATAACCT+TGG | + | chr5_3:11760765-11760784 | Msa0798810:intron | 30.0% |
! | ACTTGTTAAGTGATAACCTT+GGG | + | chr5_3:11760766-11760785 | Msa0798810:intron | 30.0% |
TCTCCCAGTATATTTAATGA+AGG | + | chr5_3:11760839-11760858 | Msa0798810:intron | 30.0% | |
! | AGGCTTTTTATCTTGAGAAT+TGG | + | chr5_3:11760859-11760878 | Msa0798810:intron | 30.0% |
ATGAAAGGAAACTTCTTTAG+TGG | + | chr5_3:11760928-11760947 | Msa0798810:intron | 30.0% | |
TACATGTTTAAGCTGACTAA+TGG | - | chr5_3:11760975-11760994 | None:intergenic | 30.0% | |
TACAAGTAATATCCATCATC+GGG | - | chr5_3:11761266-11761285 | None:intergenic | 30.0% | |
!! | GATGATGGATATTACTTGTA+AGG | + | chr5_3:11761266-11761285 | Msa0798810:intron | 30.0% |
!!! | CAATTTTAAAGTTAGGCTAC+AGG | - | chr5_3:11761324-11761343 | None:intergenic | 30.0% |
CATGATATAAAGACAGCATA+GGG | - | chr5_3:11761372-11761391 | None:intergenic | 30.0% | |
ACATGATATAAAGACAGCAT+AGG | - | chr5_3:11761373-11761392 | None:intergenic | 30.0% | |
!!! | CTGTTTTTTCGTCATTTTGA+GGG | - | chr5_3:11761468-11761487 | None:intergenic | 30.0% |
!!! | TCTGTTTTTTCGTCATTTTG+AGG | - | chr5_3:11761469-11761488 | None:intergenic | 30.0% |
TGTAACAAAAAACAGCATAG+AGG | - | chr5_3:11761507-11761526 | None:intergenic | 30.0% | |
!!! | TATGCTGTTTTTTGTTACAG+AGG | + | chr5_3:11761508-11761527 | Msa0798810:intron | 30.0% |
TTAACTACAATTCATGCTTC+TGG | + | chr5_3:11761630-11761649 | Msa0798810:intron | 30.0% | |
TAACTACAATTCATGCTTCT+GGG | + | chr5_3:11761631-11761650 | Msa0798810:intron | 30.0% | |
GTATCATTATGTGTATATGC+AGG | + | chr5_3:11761700-11761719 | Msa0798810:intron | 30.0% | |
TTTCCTTCCAAGTCAATATT+TGG | - | chr5_3:11761734-11761753 | None:intergenic | 30.0% | |
ACAGTGTTTATATTAAGGAC+AGG | - | chr5_3:11761791-11761810 | None:intergenic | 30.0% | |
!!! | GCTCTGTTTTTTAACATATC+AGG | + | chr5_3:11761844-11761863 | Msa0798810:intron | 30.0% |
!! | TCAGGGTTTTGATATTTGAA+CGG | + | chr5_3:11761862-11761881 | Msa0798810:intron | 30.0% |
AGATGTTTGAATCTAATGTG+AGG | + | chr5_3:11761993-11762012 | Msa0798810:CDS | 30.0% | |
AATATATTTCAAAAGGGGCA+TGG | - | chr5_3:11762090-11762109 | None:intergenic | 30.0% | |
!!! | CGTCAGTATGTTATTTTTCT+TGG | + | chr5_3:11762162-11762181 | Msa0798810:three_prime_UTR | 30.0% |
!!! | CAGTATGTTATTTTTCTTGG+TGG | + | chr5_3:11762165-11762184 | Msa0798810:three_prime_UTR | 30.0% |
!!! | TATGTTATTTTTCTTGGTGG+AGG | + | chr5_3:11762168-11762187 | Msa0798810:three_prime_UTR | 30.0% |
ACATCAACATTCCAATTGTT+TGG | - | chr5_3:11762236-11762255 | None:intergenic | 30.0% | |
GATGTAACTTATGTGCTTTA+TGG | + | chr5_3:11762251-11762270 | Msa0798810:three_prime_UTR | 30.0% | |
AAAAACAGAAACCCTAGAAG+AGG | - | chr5_3:11758612-11758631 | None:intergenic | 35.0% | |
ACAAGAATAAGATCGCGTTT+AGG | - | chr5_3:11758836-11758855 | None:intergenic | 35.0% | |
ATGATATCAAAGAATCGGCA+TGG | - | chr5_3:11758882-11758901 | None:intergenic | 35.0% | |
CATTATGGGACAAAATTAGC+TGG | + | chr5_3:11758906-11758925 | Msa0798810:intron | 35.0% | |
!! | CTGAGTTTGAGTTCGATTTT+TGG | - | chr5_3:11759127-11759146 | None:intergenic | 35.0% |
CAAAAATCGAACTCAAACTC+AGG | + | chr5_3:11759125-11759144 | Msa0798810:intron | 35.0% | |
TGTATGTTTAGTATCACTGC+GGG | - | chr5_3:11759228-11759247 | None:intergenic | 35.0% | |
! | GATATGAAGTGTTCTAATGC+TGG | + | chr5_3:11759362-11759381 | Msa0798810:intron | 35.0% |
!!! | CTGGTTGATGTTGTTTTTGT+AGG | + | chr5_3:11759381-11759400 | Msa0798810:intron | 35.0% |
!!! | TTGCCATAGCAGGAATTTTT+TGG | + | chr5_3:11759653-11759672 | Msa0798810:intron | 35.0% |
!!! | TGCCATAGCAGGAATTTTTT+GGG | + | chr5_3:11759654-11759673 | Msa0798810:intron | 35.0% |
GACTCGATGAAAAATAAAGG+AGG | - | chr5_3:11760046-11760065 | None:intergenic | 35.0% | |
! | GCTGCTAACAATGATACTTT+TGG | + | chr5_3:11760157-11760176 | Msa0798810:intron | 35.0% |
! | ATGTTATTAGAGGATGATGG+TGG | - | chr5_3:11760374-11760393 | None:intergenic | 35.0% |
GCAATGTTATTAGAGGATGA+TGG | - | chr5_3:11760377-11760396 | None:intergenic | 35.0% | |
ACAAGGTAGAGATAAGTGAA+TGG | + | chr5_3:11760470-11760489 | Msa0798810:intron | 35.0% | |
AATGGAAAACCTTGAGATTG+TGG | + | chr5_3:11760488-11760507 | Msa0798810:intron | 35.0% | |
TTCTTACTACCACAATCTCA+AGG | - | chr5_3:11760500-11760519 | None:intergenic | 35.0% | |
TGTGGTAGTAAGAATGATCT+AGG | + | chr5_3:11760506-11760525 | Msa0798810:intron | 35.0% | |
ATCTAGGAGTTGAATTAGCA+AGG | + | chr5_3:11760522-11760541 | Msa0798810:intron | 35.0% | |
! | GAGCCTACAGTAAATTTTCA+CGG | - | chr5_3:11760560-11760579 | None:intergenic | 35.0% |
!! | ATAAGAGCATTCACACTTCA+CGG | - | chr5_3:11760731-11760750 | None:intergenic | 35.0% |
CTTGTTAAGTGATAACCTTG+GGG | + | chr5_3:11760767-11760786 | Msa0798810:intron | 35.0% | |
TTGTTAAGTGATAACCTTGG+GGG | + | chr5_3:11760768-11760787 | Msa0798810:intron | 35.0% | |
! | TGTTCTTTTTCTTTCTTGGG+CGG | + | chr5_3:11760808-11760827 | Msa0798810:intron | 35.0% |
TCAAAACTTCGAAGTTCATC+AGG | - | chr5_3:11761238-11761257 | None:intergenic | 35.0% | |
AACAAAAAACAGCATAGAGG+TGG | - | chr5_3:11761504-11761523 | None:intergenic | 35.0% | |
! | CTACCATCCAAATATTGACT+TGG | + | chr5_3:11761724-11761743 | Msa0798810:CDS | 35.0% |
CTTCCAAGTCAATATTTGGA+TGG | - | chr5_3:11761730-11761749 | None:intergenic | 35.0% | |
!! | CATCCAAATATTGACTTGGA+AGG | + | chr5_3:11761728-11761747 | Msa0798810:CDS | 35.0% |
TCAACATCTTAAGAGAAGAC+TGG | + | chr5_3:11761762-11761781 | Msa0798810:CDS | 35.0% | |
!! | CAGGGTTTTGATATTTGAAC+GGG | + | chr5_3:11761863-11761882 | Msa0798810:intron | 35.0% |
!! | AGGGTTTTGATATTTGAACG+GGG | + | chr5_3:11761864-11761883 | Msa0798810:intron | 35.0% |
ACGGGGATACTTGAAATTTA+TGG | + | chr5_3:11761881-11761900 | Msa0798810:intron | 35.0% | |
! | ATCTGTTACTTATTGTGTGC+AGG | + | chr5_3:11761910-11761929 | Msa0798810:intron | 35.0% |
TGTTTGAATCTAATGTGAGG+AGG | + | chr5_3:11761996-11762015 | Msa0798810:CDS | 35.0% | |
GTTTGAATCTAATGTGAGGA+GGG | + | chr5_3:11761997-11762016 | Msa0798810:CDS | 35.0% | |
GCATCTAAAAGCCAAACAAT+TGG | + | chr5_3:11762222-11762241 | Msa0798810:three_prime_UTR | 35.0% | |
GAGATCGATAATTGAGAGAG+AGG | - | chr5_3:11758579-11758598 | None:intergenic | 40.0% | |
AGAAACCCTAGAAGAGGAAA+GGG | - | chr5_3:11758606-11758625 | None:intergenic | 40.0% | |
GAAGTTCTACGATTAGATCG+CGG | + | chr5_3:11758769-11758788 | Msa0798810:intron | 40.0% | |
! | TAGATAGGGATGGGCTTAAT+TGG | + | chr5_3:11759270-11759289 | Msa0798810:intron | 40.0% |
CAAGCTGAAAATGCCAGTAA+TGG | + | chr5_3:11759446-11759465 | Msa0798810:CDS | 40.0% | |
CTTAACAGGTACTCCATTAC+TGG | - | chr5_3:11759462-11759481 | None:intergenic | 40.0% | |
GATTCAAGTATTCTGGCCAT+GGG | - | chr5_3:11759590-11759609 | None:intergenic | 40.0% | |
CCAGAATACTTGAATCGAGA+GGG | + | chr5_3:11759594-11759613 | Msa0798810:intron | 40.0% | |
ATACTTGAATCGAGAGGGAA+AGG | + | chr5_3:11759599-11759618 | Msa0798810:intron | 40.0% | |
GAGGGAAAGGTGAACAATAA+AGG | + | chr5_3:11759612-11759631 | Msa0798810:intron | 40.0% | |
TAATGTGTAGTTGCCATAGC+AGG | + | chr5_3:11759643-11759662 | Msa0798810:intron | 40.0% | |
!!! | GCCATAGCAGGAATTTTTTG+GGG | + | chr5_3:11759655-11759674 | Msa0798810:intron | 40.0% |
!!! | CCATAGCAGGAATTTTTTGG+GGG | + | chr5_3:11759656-11759675 | Msa0798810:intron | 40.0% |
TTTCTGGATTTCATTCTCGC+TGG | - | chr5_3:11759721-11759740 | None:intergenic | 40.0% | |
CAATTGCAGGAGATGATTGT+GGG | - | chr5_3:11759954-11759973 | None:intergenic | 40.0% | |
ACAATTGCAGGAGATGATTG+TGG | - | chr5_3:11759955-11759974 | None:intergenic | 40.0% | |
ACAATCATCTCCTGCAATTG+TGG | + | chr5_3:11759954-11759973 | Msa0798810:intron | 40.0% | |
ATCCAGAGTTTACTGAAGAC+TGG | - | chr5_3:11759999-11760018 | None:intergenic | 40.0% | |
!! | AGAAGCATGGAGGTTTTCAT+AGG | - | chr5_3:11760290-11760309 | None:intergenic | 40.0% |
! | AGCTTATAGTAGAAGCATGG+AGG | - | chr5_3:11760300-11760319 | None:intergenic | 40.0% |
TGCAGCTTATAGTAGAAGCA+TGG | - | chr5_3:11760303-11760322 | None:intergenic | 40.0% | |
TGTCATCTGCCATACTCTTA+TGG | + | chr5_3:11760324-11760343 | Msa0798810:intron | 40.0% | |
ATGAGACGCAGAAAGAAACA+AGG | + | chr5_3:11760453-11760472 | Msa0798810:intron | 40.0% | |
AGTGTGAATGCTCTTATGCT+TGG | + | chr5_3:11760734-11760753 | Msa0798810:intron | 40.0% | |
TGAAGAGTTACAAGCTCACT+AGG | + | chr5_3:11761008-11761027 | Msa0798810:intron | 40.0% | |
AATTGCATGGTGCAAGACTT+TGG | - | chr5_3:11761197-11761216 | None:intergenic | 40.0% | |
TTTGCCATTGGGAAATTGCA+TGG | - | chr5_3:11761210-11761229 | None:intergenic | 40.0% | |
ATCAGGTCATCTTTGCCATT+GGG | - | chr5_3:11761221-11761240 | None:intergenic | 40.0% | |
!!! | GCTGTTTTTTGTTACAGAGG+AGG | + | chr5_3:11761511-11761530 | Msa0798810:intron | 40.0% |
ATAGATGGGAGACACATTGA+AGG | - | chr5_3:11761551-11761570 | None:intergenic | 40.0% | |
TTTGTCTTGCACTTCACCTT+GGG | - | chr5_3:11761586-11761605 | None:intergenic | 40.0% | |
! | TGGCTTGTATCATCTCTTCA+CGG | + | chr5_3:11761817-11761836 | Msa0798810:CDS | 40.0% |
TGTATCATCTCTTCACGGTA+TGG | + | chr5_3:11761822-11761841 | Msa0798810:intron | 40.0% | |
ATTATCTCTCAAGACAGCAG+CGG | - | chr5_3:11761969-11761988 | None:intergenic | 40.0% | |
TGAGCATGGTTTACATACAG+CGG | - | chr5_3:11762060-11762079 | None:intergenic | 40.0% | |
!!! | GTTTGGCTTTTAGATGCGTT+TGG | - | chr5_3:11762219-11762238 | None:intergenic | 40.0% |
! | CAATCAGAAAATGGGTTCAG+CGG | + | chr5_3:11762296-11762315 | Msa0798810:three_prime_UTR | 40.0% |
GAATAGCGTGAGAGAAACGA+AGG | - | chr5_3:11758546-11758565 | None:intergenic | 45.0% | |
TCTTTCCCCTTTCCTCTTCT+AGG | + | chr5_3:11758597-11758616 | Msa0798810:intron | 45.0% | |
CTTTCCCCTTTCCTCTTCTA+GGG | + | chr5_3:11758598-11758617 | Msa0798810:intron | 45.0% | |
GAAACCCTAGAAGAGGAAAG+GGG | - | chr5_3:11758605-11758624 | None:intergenic | 45.0% | |
CAGAAACCCTAGAAGAGGAA+AGG | - | chr5_3:11758607-11758626 | None:intergenic | 45.0% | |
CAACGCGTACGGAAAAACAA+AGG | - | chr5_3:11758750-11758769 | None:intergenic | 45.0% | |
TCGTAGAACTTCAACGCGTA+CGG | - | chr5_3:11758761-11758780 | None:intergenic | 45.0% | |
!! | CGCGGTGCTTTTTGTTGAAT+CGG | + | chr5_3:11758787-11758806 | Msa0798810:intron | 45.0% |
GCAAAAGCTACGAAGCTGTT+TGG | + | chr5_3:11759012-11759031 | Msa0798810:intron | 45.0% | |
GAAGCTGTTTGGTATCACGT+TGG | + | chr5_3:11759023-11759042 | Msa0798810:intron | 45.0% | |
!!! | GGGTTGCTTTTGCAAAATCG+CGG | + | chr5_3:11759179-11759198 | Msa0798810:intron | 45.0% |
! | GCGGTGACTTACGATGATTT+TGG | + | chr5_3:11759198-11759217 | Msa0798810:intron | 45.0% |
CCAGCACTTTGCTTCTTAAC+AGG | - | chr5_3:11759476-11759495 | None:intergenic | 45.0% | |
CCTGTTAAGAAGCAAAGTGC+TGG | + | chr5_3:11759473-11759492 | Msa0798810:CDS | 45.0% | |
CGATTCAAGTATTCTGGCCA+TGG | - | chr5_3:11759591-11759610 | None:intergenic | 45.0% | |
GCCAGAATACTTGAATCGAG+AGG | + | chr5_3:11759593-11759612 | Msa0798810:intron | 45.0% | |
CCCTCTCGATTCAAGTATTC+TGG | - | chr5_3:11759597-11759616 | None:intergenic | 45.0% | |
CCCCCAAAAAATTCCTGCTA+TGG | - | chr5_3:11759659-11759678 | None:intergenic | 45.0% | |
!! | TTTTTGGGGGCTTCGTTGTT+TGG | + | chr5_3:11759669-11759688 | Msa0798810:intron | 45.0% |
!! | TTTTGGGGGCTTCGTTGTTT+GGG | + | chr5_3:11759670-11759689 | Msa0798810:intron | 45.0% |
AGAGAAGAGACCACAATTGC+AGG | - | chr5_3:11759967-11759986 | None:intergenic | 45.0% | |
GACCAGTCTTCAGTAAACTC+TGG | + | chr5_3:11759994-11760013 | Msa0798810:intron | 45.0% | |
CATCTGCCATACTCTTATGG+TGG | + | chr5_3:11760327-11760346 | Msa0798810:intron | 45.0% | |
!! | TAGAGGATGATGGTGGTACA+TGG | - | chr5_3:11760367-11760386 | None:intergenic | 45.0% |
GTGAGCTTGTAACTCTTCAC+AGG | - | chr5_3:11761007-11761026 | None:intergenic | 45.0% | |
TGCACCATGCAATTTCCCAA+TGG | + | chr5_3:11761203-11761222 | Msa0798810:CDS | 45.0% | |
CATCAGGTCATCTTTGCCAT+TGG | - | chr5_3:11761222-11761241 | None:intergenic | 45.0% | |
!!! | GTTTTGATTCGACCCGATGA+TGG | + | chr5_3:11761251-11761270 | Msa0798810:CDS | 45.0% |
AAGACAGCATAGGGACATCA+AGG | - | chr5_3:11761363-11761382 | None:intergenic | 45.0% | |
!! | TCATTTTGAGGGTGACGTGT+AGG | - | chr5_3:11761457-11761476 | None:intergenic | 45.0% |
GGTGCTTCATGTGGATAGAT+GGG | - | chr5_3:11761565-11761584 | None:intergenic | 45.0% | |
CTTTGTCTTGCACTTCACCT+TGG | - | chr5_3:11761587-11761606 | None:intergenic | 45.0% | |
CAAGGTGAAGTGCAAGACAA+AGG | + | chr5_3:11761585-11761604 | Msa0798810:CDS | 45.0% | |
GTGAAGTGCAAGACAAAGGT+AGG | + | chr5_3:11761589-11761608 | Msa0798810:intron | 45.0% | |
TTCAGGGGATCCTCGTAATT+TGG | - | chr5_3:11761938-11761957 | None:intergenic | 45.0% | |
AGCATGGTTTACATACAGCG+GGG | - | chr5_3:11762058-11762077 | None:intergenic | 45.0% | |
GAGCATGGTTTACATACAGC+GGG | - | chr5_3:11762059-11762078 | None:intergenic | 45.0% | |
! | TAGATGCGTTTGGTGGTCTA+AGG | - | chr5_3:11762209-11762228 | None:intergenic | 45.0% |
! | TGGCTTTTAGATGCGTTTGG+TGG | - | chr5_3:11762216-11762235 | None:intergenic | 45.0% |
CAAGTATTCTGGCCATGGGT+AGG | - | chr5_3:11759586-11759605 | None:intergenic | 50.0% | |
! | ACATGGTTTTCTCACCCCCA+AGG | - | chr5_3:11760785-11760804 | None:intergenic | 50.0% |
GGGTGCTTCATGTGGATAGA+TGG | - | chr5_3:11761566-11761585 | None:intergenic | 50.0% | |
! | CTATCCACATGAAGCACCCA+AGG | + | chr5_3:11761567-11761586 | Msa0798810:CDS | 50.0% |
TTCACCTTGGGTGCTTCATG+TGG | - | chr5_3:11761574-11761593 | None:intergenic | 50.0% | |
TGTGCAGGAGCCAAATTACG+AGG | + | chr5_3:11761925-11761944 | Msa0798810:intron | 50.0% | |
AGCAGCGGCATCATGATTCA+GGG | - | chr5_3:11761954-11761973 | None:intergenic | 50.0% | |
AATGTGAGGAGGGCAATGTC+TGG | + | chr5_3:11762007-11762026 | Msa0798810:CDS | 50.0% | |
! | GCAATGTCTGGTGGGTATGT+GGG | + | chr5_3:11762019-11762038 | Msa0798810:CDS | 50.0% |
TTACATACAGCGGGGGAAGA+AGG | - | chr5_3:11762050-11762069 | None:intergenic | 50.0% | |
GCATGGTTTACATACAGCGG+GGG | - | chr5_3:11762057-11762076 | None:intergenic | 50.0% | |
GGCATGGAAGTTGTTGAGCA+TGG | - | chr5_3:11762074-11762093 | None:intergenic | 50.0% | |
!! | TTTCTTGGTGGAGGAGCATC+AGG | + | chr5_3:11762177-11762196 | Msa0798810:three_prime_UTR | 50.0% |
GGCGAGTTGCGTCTTCACAA+AGG | + | chr5_3:11759494-11759513 | Msa0798810:CDS | 55.0% | |
GTATTCTGGCCATGGGTAGG+AGG | - | chr5_3:11759583-11759602 | None:intergenic | 55.0% | |
TTTGGGCCTTGGAGTGTGAC+TGG | + | chr5_3:11759687-11759706 | Msa0798810:intron | 55.0% | |
TCCTCTCCAGTCACACTCCA+AGG | - | chr5_3:11759696-11759715 | None:intergenic | 55.0% | |
CTGTAGGCTCTCCTGCTTTG+AGG | + | chr5_3:11760570-11760589 | Msa0798810:intron | 55.0% | |
!! | TAGGCTCTCCTGCTTTGAGG+AGG | + | chr5_3:11760573-11760592 | Msa0798810:intron | 55.0% |
!! | TCTCCTGCTTTGAGGAGGAC+AGG | + | chr5_3:11760578-11760597 | Msa0798810:intron | 55.0% |
!! | CTCCTGCTTTGAGGAGGACA+GGG | + | chr5_3:11760579-11760598 | Msa0798810:intron | 55.0% |
GCAGCGGCATCATGATTCAG+GGG | - | chr5_3:11761953-11761972 | None:intergenic | 55.0% | |
CAGCAGCGGCATCATGATTC+AGG | - | chr5_3:11761955-11761974 | None:intergenic | 55.0% | |
TGAGGAGGGCAATGTCTGGT+GGG | + | chr5_3:11762011-11762030 | Msa0798810:CDS | 55.0% | |
! | GGCAATGTCTGGTGGGTATG+TGG | + | chr5_3:11762018-11762037 | Msa0798810:CDS | 55.0% |
GTGGCACTTCCTCCTACCCA+TGG | + | chr5_3:11759571-11759590 | Msa0798810:intron | 60.0% | |
GGGCTTCGTTGTTTGGGCCT+TGG | + | chr5_3:11759676-11759695 | Msa0798810:intron | 60.0% | |
GCCTTGGAGTGTGACTGGAG+AGG | + | chr5_3:11759692-11759711 | Msa0798810:intron | 60.0% | |
GTCCCTGTCCTCCTCAAAGC+AGG | - | chr5_3:11760584-11760603 | None:intergenic | 60.0% | |
GTGAGGAGGGCAATGTCTGG+TGG | + | chr5_3:11762010-11762029 | Msa0798810:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_3 | gene | 11758415 | 11762324 | 11758415 | ID=Msa0798810;Name=Msa0798810 |
chr5_3 | mRNA | 11758415 | 11762324 | 11758415 | ID=Msa0798810-mRNA-1;Parent=Msa0798810;Name=Msa0798810-mRNA-1;_AED=0.17;_eAED=0.17;_QI=125|1|1|1|0.8|0.83|6|255|183 |
chr5_3 | exon | 11758415 | 11758535 | 11758415 | ID=Msa0798810-mRNA-1:exon:4833;Parent=Msa0798810-mRNA-1 |
chr5_3 | exon | 11759403 | 11759515 | 11759403 | ID=Msa0798810-mRNA-1:exon:4834;Parent=Msa0798810-mRNA-1 |
chr5_3 | exon | 11761174 | 11761282 | 11761174 | ID=Msa0798810-mRNA-1:exon:4835;Parent=Msa0798810-mRNA-1 |
chr5_3 | exon | 11761528 | 11761606 | 11761528 | ID=Msa0798810-mRNA-1:exon:4836;Parent=Msa0798810-mRNA-1 |
chr5_3 | exon | 11761722 | 11761838 | 11761722 | ID=Msa0798810-mRNA-1:exon:4837;Parent=Msa0798810-mRNA-1 |
chr5_3 | exon | 11761932 | 11762324 | 11761932 | ID=Msa0798810-mRNA-1:exon:4838;Parent=Msa0798810-mRNA-1 |
chr5_3 | five_prime_UTR | 11758415 | 11758535 | 11758415 | ID=Msa0798810-mRNA-1:five_prime_utr;Parent=Msa0798810-mRNA-1 |
chr5_3 | five_prime_UTR | 11759403 | 11759406 | 11759403 | ID=Msa0798810-mRNA-1:five_prime_utr;Parent=Msa0798810-mRNA-1 |
chr5_3 | CDS | 11759407 | 11759515 | 11759407 | ID=Msa0798810-mRNA-1:cds;Parent=Msa0798810-mRNA-1 |
chr5_3 | CDS | 11761174 | 11761282 | 11761174 | ID=Msa0798810-mRNA-1:cds;Parent=Msa0798810-mRNA-1 |
chr5_3 | CDS | 11761528 | 11761606 | 11761528 | ID=Msa0798810-mRNA-1:cds;Parent=Msa0798810-mRNA-1 |
chr5_3 | CDS | 11761722 | 11761838 | 11761722 | ID=Msa0798810-mRNA-1:cds;Parent=Msa0798810-mRNA-1 |
chr5_3 | CDS | 11761932 | 11762069 | 11761932 | ID=Msa0798810-mRNA-1:cds;Parent=Msa0798810-mRNA-1 |
chr5_3 | three_prime_UTR | 11762070 | 11762324 | 11762070 | ID=Msa0798810-mRNA-1:three_prime_utr;Parent=Msa0798810-mRNA-1 |
Gene Sequence |
Protein sequence |