Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738230 | AES99530.2 | 92.241 | 116 | 3 | 1 | 1 | 116 | 1 | 110 | 7.39e-65 | 214 |
| Msa0738230 | AES99530.2 | 94.872 | 195 | 4 | 1 | 149 | 343 | 1 | 189 | 1.41e-127 | 373 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738230 | sp|P58684|SPCS2_ARATH | 74.227 | 194 | 38 | 2 | 151 | 343 | 10 | 192 | 3.28e-98 | 291 |
| Msa0738230 | sp|P58684|SPCS2_ARATH | 68.750 | 112 | 24 | 1 | 3 | 114 | 10 | 110 | 1.13e-46 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738230 | G7KBX4 | 92.241 | 116 | 3 | 1 | 1 | 116 | 1 | 110 | 3.53e-65 | 214 |
| Msa0738230 | G7KBX4 | 94.872 | 195 | 4 | 1 | 149 | 343 | 1 | 189 | 6.73e-128 | 373 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0738230 | Msa0739080 | 0.806220 | 9.143891e-50 | -8.615850e-47 |
| Msa0738230 | Msa0819540 | 0.826878 | 2.130701e-54 | -8.615850e-47 |
| Msa0423750 | Msa0738230 | 0.808981 | 2.371253e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738230 | MtrunA17_Chr5g0436544 | 92.821 | 195 | 3 | 1 | 149 | 343 | 1 | 184 | 1.46e-127 | 362 |
| Msa0738230 | MtrunA17_Chr5g0436544 | 88.793 | 116 | 2 | 1 | 1 | 116 | 1 | 105 | 1.47e-64 | 202 |
| Msa0738230 | MtrunA17_Chr8g0384471 | 88.235 | 34 | 4 | 0 | 31 | 64 | 36 | 69 | 2.17e-12 | 62.4 |
| Msa0738230 | MtrunA17_Chr8g0384471 | 88.235 | 34 | 4 | 0 | 179 | 212 | 36 | 69 | 2.17e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738230 | AT2G39960.1 | 74.227 | 194 | 38 | 2 | 151 | 343 | 10 | 192 | 3.34e-99 | 291 |
| Msa0738230 | AT2G39960.1 | 68.750 | 112 | 24 | 1 | 3 | 114 | 10 | 110 | 1.15e-47 | 159 |
| Msa0738230 | AT4G04200.1 | 64.796 | 196 | 53 | 4 | 150 | 343 | 9 | 190 | 3.81e-81 | 245 |
| Msa0738230 | AT4G04200.1 | 56.140 | 114 | 36 | 3 | 2 | 115 | 9 | 108 | 2.74e-31 | 117 |
Find 79 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGAGTATAAACATGTATT+TGG | 0.174371 | 5_1:-55950402 | Msa0738230:three_prime_UTR |
| TTCAGTTTCTTCTTCTCATC+TGG | 0.179183 | 5_1:-55953028 | Msa0738230:intron |
| TTCAGTTTCTTCTTCTCATC+TGG | 0.179183 | 5_1:-55955914 | Msa0738230:five_prime_UTR |
| GTCAGAAAATCTGGGTAATT+TGG | 0.222649 | 5_1:+55950775 | None:intergenic |
| TGCACGTCATTGTAAGATTT+TGG | 0.226277 | 5_1:+55956059 | None:intergenic |
| TCGTTTGCAGAAACTGATTT+TGG | 0.230960 | 5_1:+55950722 | None:intergenic |
| CGTATACATGTCAGAAAATC+TGG | 0.239995 | 5_1:+55950766 | None:intergenic |
| CCATATCACTTGCTCTTCTT+TGG | 0.240424 | 5_1:+55950455 | None:intergenic |
| TTCAATTAGCAAGTTTCTTT+TGG | 0.250763 | 5_1:-55954452 | Msa0738230:intron |
| TCTTGGTTGAGGGCCTCTTC+TGG | 0.250821 | 5_1:-55950517 | Msa0738230:CDS |
| AATAACCATCAAATGGTTAT+AGG | 0.305584 | 5_1:+55950257 | None:intergenic |
| TTATAAAGAAATCCATTTGA+TGG | 0.326176 | 5_1:-55950223 | Msa0738230:three_prime_UTR |
| ATACCACTGGGTAACACTTT+TGG | 0.331383 | 5_1:+55950685 | None:intergenic |
| ATGTGAAATTGAGCAATATT+AGG | 0.331788 | 5_1:-55952748 | Msa0738230:CDS |
| ATGTGAAATTGAGCAATATT+AGG | 0.331788 | 5_1:-55955634 | Msa0738230:CDS |
| ATTCGCTTTCTTCTGTCCTT+TGG | 0.333788 | 5_1:+55952966 | None:intergenic |
| ATTCGCTTTCTTCTGTCCTT+TGG | 0.333788 | 5_1:+55955852 | None:intergenic |
| AAAGGTAAGGAAAGGATATA+AGG | 0.355380 | 5_1:+55952628 | None:intergenic |
| AAAGGTAAGGAAAGGATATA+AGG | 0.355380 | 5_1:+55955514 | None:intergenic |
| ACACACAGTGAATAAATAAA+AGG | 0.361489 | 5_1:+55952610 | None:intergenic |
| ACACACAGTGAATAAATAAA+AGG | 0.361489 | 5_1:+55955496 | None:intergenic |
| CCAAAGAAGAGCAAGTGATA+TGG | 0.362047 | 5_1:-55950455 | Msa0738230:exon |
| AGAAGAAAATCGCGATTCTC+CGG | 0.379794 | 5_1:+55952662 | None:intergenic |
| AGAAGAAAATCGCGATTCTC+CGG | 0.379794 | 5_1:+55955548 | None:intergenic |
| AGTTTCCTATAACCATTTGA+TGG | 0.380376 | 5_1:-55950262 | Msa0738230:three_prime_UTR |
| TCAGTTTCTTCTTCTCATCT+GGG | 0.384336 | 5_1:-55953027 | Msa0738230:intron |
| TCAGTTTCTTCTTCTCATCT+GGG | 0.384336 | 5_1:-55955913 | Msa0738230:five_prime_UTR |
| GCAATATTAGGTTGTTGCTT+GGG | 0.414641 | 5_1:-55952736 | Msa0738230:CDS |
| GCAATATTAGGTTGTTGCTT+GGG | 0.414641 | 5_1:-55955622 | Msa0738230:CDS |
| TAAGGATGGTGTCTTGGTTG+AGG | 0.416353 | 5_1:-55950528 | Msa0738230:CDS |
| AAGGATGGTGTCTTGGTTGA+GGG | 0.421110 | 5_1:-55950527 | Msa0738230:CDS |
| TTTGGATTGTAGGTTATAAC+GGG | 0.434899 | 5_1:-55952788 | Msa0738230:intron |
| TTTGGATTGTAGGTTATAAC+GGG | 0.434899 | 5_1:-55955674 | Msa0738230:intron |
| TTCCTTTACCAGTACCGGTT+TGG | 0.452853 | 5_1:-55950807 | Msa0738230:CDS |
| ATTATAAGATAACCATCAAA+TGG | 0.459507 | 5_1:+55950211 | None:intergenic |
| AGCAATATTAGGTTGTTGCT+TGG | 0.460593 | 5_1:-55952737 | Msa0738230:CDS |
| AGCAATATTAGGTTGTTGCT+TGG | 0.460593 | 5_1:-55955623 | Msa0738230:CDS |
| CAGGGTTCCTTTACCAGTAC+CGG | 0.482927 | 5_1:-55950812 | Msa0738230:CDS |
| TACCAAACCGGTACTGGTAA+AGG | 0.483907 | 5_1:+55950805 | None:intergenic |
| GTTCACTAAGGATGGTGTCT+TGG | 0.485813 | 5_1:-55950534 | Msa0738230:CDS |
| CGAGAATGTGCTTGATTGAA+TGG | 0.489697 | 5_1:+55952932 | None:intergenic |
| CGAGAATGTGCTTGATTGAA+TGG | 0.489697 | 5_1:+55955818 | None:intergenic |
| GGAAACTACCAAACCGGTAC+TGG | 0.493140 | 5_1:+55950799 | None:intergenic |
| AGACAAATAATGCTAATGTC+TGG | 0.500981 | 5_1:-55954419 | Msa0738230:intron |
| GGTTGAGGGCCTCTTCTGGA+AGG | 0.505626 | 5_1:-55950513 | Msa0738230:CDS |
| TATAAACATGTATTTGGATG+TGG | 0.510501 | 5_1:-55950396 | Msa0738230:three_prime_UTR |
| TTGTAGGTTATAACGGGTCG+TGG | 0.511975 | 5_1:-55952782 | Msa0738230:intron |
| TTGTAGGTTATAACGGGTCG+TGG | 0.511975 | 5_1:-55955668 | Msa0738230:intron |
| GATTCCAGGTTCACTAAGGA+TGG | 0.517156 | 5_1:-55950542 | Msa0738230:intron |
| TTTGGATTCCAGGTTCACTA+AGG | 0.518138 | 5_1:-55950546 | Msa0738230:intron |
| GAAGAAAATCGCGATTCTCC+GGG | 0.518343 | 5_1:+55952663 | None:intergenic |
| GAAGAAAATCGCGATTCTCC+GGG | 0.518343 | 5_1:+55955549 | None:intergenic |
| TCTCGATGAGTCTGCTTCTG+AGG | 0.518489 | 5_1:-55952914 | Msa0738230:intron |
| TCTCGATGAGTCTGCTTCTG+AGG | 0.518489 | 5_1:-55955800 | Msa0738230:intron |
| TTTGGAGGAAACTACCAAAC+CGG | 0.521957 | 5_1:+55950793 | None:intergenic |
| AATAAATAAAAGGTAAGGAA+AGG | 0.544623 | 5_1:+55952620 | None:intergenic |
| AATAAATAAAAGGTAAGGAA+AGG | 0.544623 | 5_1:+55955506 | None:intergenic |
| AGAAAATCTGGGTAATTTGG+AGG | 0.545278 | 5_1:+55950778 | None:intergenic |
| CTTCGACATCCTTCCAGAAG+AGG | 0.552248 | 5_1:+55950504 | None:intergenic |
| CAGTGAATAAATAAAAGGTA+AGG | 0.583044 | 5_1:+55952615 | None:intergenic |
| CAGTGAATAAATAAAAGGTA+AGG | 0.583044 | 5_1:+55955501 | None:intergenic |
| GCAGCTGATCATATACACTA+AGG | 0.584453 | 5_1:-55951838 | Msa0738230:CDS |
| GCAGCTGATCATATACACTA+AGG | 0.584453 | 5_1:-55954723 | Msa0738230:CDS |
| AACGGGTCGTGGGTATGTTG+AGG | 0.596614 | 5_1:-55952771 | Msa0738230:CDS |
| AACGGGTCGTGGGTATGTTG+AGG | 0.596614 | 5_1:-55955657 | Msa0738230:CDS |
| GTATACATGTCAGAAAATCT+GGG | 0.601017 | 5_1:+55950767 | None:intergenic |
| TCACAGAAACTTACAGTCAG+AGG | 0.616719 | 5_1:+55951789 | None:intergenic |
| TCACAGAAACTTACAGTCAG+AGG | 0.616719 | 5_1:+55954674 | None:intergenic |
| CAGAGGATAAGTAAACAGAA+TGG | 0.624465 | 5_1:+55951806 | None:intergenic |
| CAGAGGATAAGTAAACAGAA+TGG | 0.624465 | 5_1:+55954691 | None:intergenic |
| ATTCGAAACATGGCAACCAA+AGG | 0.628041 | 5_1:-55952982 | Msa0738230:CDS |
| ATTCGAAACATGGCAACCAA+AGG | 0.628041 | 5_1:-55955868 | Msa0738230:exon |
| TGTAGGTTATAACGGGTCGT+GGG | 0.632463 | 5_1:-55952781 | Msa0738230:intron |
| TGTAGGTTATAACGGGTCGT+GGG | 0.632463 | 5_1:-55955667 | Msa0738230:intron |
| TACGTATGTAGTCTTCAACT+TGG | 0.636467 | 5_1:-55951865 | Msa0738230:intron |
| TACGTATGTAGTCTTCAACT+TGG | 0.636467 | 5_1:-55954750 | Msa0738230:intron |
| TCAGCGAAGAATTCGAAACA+TGG | 0.664282 | 5_1:-55952992 | Msa0738230:CDS |
| TCAGCGAAGAATTCGAAACA+TGG | 0.664282 | 5_1:-55955878 | Msa0738230:exon |
| TTACCAAAAGTGTTACCCAG+TGG | 0.756276 | 5_1:-55950688 | Msa0738230:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGTAAATATCTAAATTA+AGG | - | chr5_1:55951181-55951200 | Msa0738230:intron | 10.0% |
| !!! | ATTTAACATTTTATTATGTA+TGG | - | chr5_1:55952017-55952036 | Msa0738230:intron | 10.0% |
| !!! | TTTAACATTTTATTATGTAT+GGG | - | chr5_1:55952018-55952037 | Msa0738230:intron | 10.0% |
| !! | TATGTAAAACTTATTTATAT+TGG | - | chr5_1:55952497-55952516 | Msa0738230:intron | 10.0% |
| !!! | ATCTATTAAACTTATTTTTT+TGG | + | chr5_1:55952908-55952927 | None:intergenic | 10.0% |
| !! | ATAAGTAAATATCTAAATTA+AGG | - | chr5_1:55951181-55951200 | Msa0738230:intron | 10.0% |
| !!! | ATTTAACATTTTATTATGTA+TGG | - | chr5_1:55952017-55952036 | Msa0738230:intron | 10.0% |
| !!! | TTTAACATTTTATTATGTAT+GGG | - | chr5_1:55952018-55952037 | Msa0738230:intron | 10.0% |
| !!! | TTTTATATCTTATTTTTTAC+AGG | - | chr5_1:55955387-55955406 | Msa0738230:intron | 10.0% |
| !!! | TTTATATCTTATTTTTTACA+GGG | - | chr5_1:55955388-55955407 | Msa0738230:intron | 10.0% |
| !!! | TAATATTTTATATTTAGACT+TGG | - | chr5_1:55956026-55956045 | Msa0738230:five_prime_UTR | 10.0% |
| !!! | GTTTTACATATTGTTTTTTT+AGG | + | chr5_1:55952487-55952506 | None:intergenic | 15.0% |
| !!! | ATTTTTTAAAACTTGGTATT+AGG | + | chr5_1:55952820-55952839 | None:intergenic | 15.0% |
| !! | CATTTATCTAAAAATGATTT+AGG | - | chr5_1:55955257-55955276 | Msa0738230:intron | 15.0% |
| !! | AATTAAAAATAACCATCAAA+TGG | + | chr5_1:55955971-55955990 | None:intergenic | 15.0% |
| !! | CAACAAGATCAAAAAAATTA+GGG | + | chr5_1:55950457-55950476 | None:intergenic | 20.0% |
| !! | TCAACAAGATCAAAAAAATT+AGG | + | chr5_1:55950458-55950477 | None:intergenic | 20.0% |
| !!! | TGAGTTTTTTGTTTGTTAAT+TGG | - | chr5_1:55950513-55950532 | Msa0738230:CDS | 20.0% |
| !!! | GAGTTTTTTGTTTGTTAATT+GGG | - | chr5_1:55950514-55950533 | Msa0738230:CDS | 20.0% |
| !! | AATAAATAAAAGGTAAGGAA+AGG | + | chr5_1:55950715-55950734 | None:intergenic | 20.0% |
| !! | TGTTGTGAAATAACAATTAT+AGG | - | chr5_1:55951054-55951073 | Msa0738230:intron | 20.0% |
| !! | TGTGTTGAAAATGAAATATT+TGG | - | chr5_1:55951277-55951296 | Msa0738230:intron | 20.0% |
| !!! | TAGTTGTTTTAATTGAAAGT+TGG | - | chr5_1:55951333-55951352 | Msa0738230:intron | 20.0% |
| !!! | ATTTGATGATTTATGTGAAA+AGG | - | chr5_1:55951374-55951393 | Msa0738230:intron | 20.0% |
| !!! | TTTGATGATTTATGTGAAAA+GGG | - | chr5_1:55951375-55951394 | Msa0738230:intron | 20.0% |
| !!! | TAAATGTTATTTCTATGTGT+TGG | + | chr5_1:55951656-55951675 | None:intergenic | 20.0% |
| !!! | TTTTCAATAGTGATTTAAAG+AGG | - | chr5_1:55952230-55952249 | Msa0738230:intron | 20.0% |
| !! | TTTCAATAGTGATTTAAAGA+GGG | - | chr5_1:55952231-55952250 | Msa0738230:intron | 20.0% |
| !! | TTATATTGGAGTAGTAATAT+TGG | - | chr5_1:55952511-55952530 | Msa0738230:intron | 20.0% |
| !!! | TATTTTATGAGAGAAAAAGA+AGG | + | chr5_1:55952568-55952587 | None:intergenic | 20.0% |
| !! | AGTCATAATATAACTCTATA+TGG | + | chr5_1:55952738-55952757 | None:intergenic | 20.0% |
| !!! | ATCTTTTCGAATTAATTTGT+TGG | - | chr5_1:55952793-55952812 | Msa0738230:intron | 20.0% |
| !! | CAAAAATAATAAAACGTGAT+TGG | - | chr5_1:55953019-55953038 | Msa0738230:CDS | 20.0% |
| !! | CAACAAGATCAAAAAAATTA+GGG | + | chr5_1:55950457-55950476 | None:intergenic | 20.0% |
| !! | TCAACAAGATCAAAAAAATT+AGG | + | chr5_1:55950458-55950477 | None:intergenic | 20.0% |
| !!! | TGAGTTTTTTGTTTGTTAAT+TGG | - | chr5_1:55950513-55950532 | Msa0738230:CDS | 20.0% |
| !!! | GAGTTTTTTGTTTGTTAATT+GGG | - | chr5_1:55950514-55950533 | Msa0738230:CDS | 20.0% |
| !! | AATAAATAAAAGGTAAGGAA+AGG | + | chr5_1:55950715-55950734 | None:intergenic | 20.0% |
| !! | TGTTGTGAAATAACAATTAT+AGG | - | chr5_1:55951054-55951073 | Msa0738230:intron | 20.0% |
| !! | TGTGTTGAAAATGAAATATT+TGG | - | chr5_1:55951277-55951296 | Msa0738230:intron | 20.0% |
| !!! | TAGTTGTTTTAATTGAAAGT+TGG | - | chr5_1:55951333-55951352 | Msa0738230:intron | 20.0% |
| !!! | ATTTGATGATTTATGTGAAA+AGG | - | chr5_1:55951374-55951393 | Msa0738230:intron | 20.0% |
| !!! | TTTGATGATTTATGTGAAAA+GGG | - | chr5_1:55951375-55951394 | Msa0738230:intron | 20.0% |
| !!! | TAAATGTTATTTCTATGTGT+TGG | + | chr5_1:55951656-55951675 | None:intergenic | 20.0% |
| !!! | TTTTCAATAGTGATTTAAAG+AGG | - | chr5_1:55952230-55952249 | Msa0738230:intron | 20.0% |
| !! | TTTCAATAGTGATTTAAAGA+GGG | - | chr5_1:55952231-55952250 | Msa0738230:intron | 20.0% |
| !!! | TGCTTTTGATTTTATTCTTT+CGG | - | chr5_1:55955313-55955332 | Msa0738230:intron | 20.0% |
| !!! | TATGTGAACGATTTTATAAA+GGG | + | chr5_1:55955577-55955596 | None:intergenic | 20.0% |
| !! | TATGAGTATAAACATGTATT+TGG | - | chr5_1:55955816-55955835 | Msa0738230:CDS | 20.0% |
| !!! | AATTAATTCCCATTTTTCAT+CGG | - | chr5_1:55955917-55955936 | Msa0738230:five_prime_UTR | 20.0% |
| !! | AAAATAAACCGATGAAAAAT+GGG | + | chr5_1:55955928-55955947 | None:intergenic | 20.0% |
| !! | TAAAATAAACCGATGAAAAA+TGG | + | chr5_1:55955929-55955948 | None:intergenic | 20.0% |
| !! | TTATAAAGAAATCCATTTGA+TGG | - | chr5_1:55955995-55956014 | Msa0738230:five_prime_UTR | 20.0% |
| !! | ATTATAAGATAACCATCAAA+TGG | + | chr5_1:55956010-55956029 | None:intergenic | 20.0% |
| !! | TGGTAGAAAAATAAATAGTT+TGG | - | chr5_1:55956046-55956065 | Msa0738230:five_prime_UTR | 20.0% |
| ! | AAAAAATTAGGGTTTAACGA+AGG | + | chr5_1:55950446-55950465 | None:intergenic | 25.0% |
| !! | TGTTAATTGGGATTGAATTT+TGG | - | chr5_1:55950526-55950545 | Msa0738230:CDS | 25.0% |
| !! | TTTTGGATTGTAGGTTATAA+CGG | - | chr5_1:55950543-55950562 | Msa0738230:intron | 25.0% |
| ! | ATGTGAAATTGAGCAATATT+AGG | - | chr5_1:55950584-55950603 | Msa0738230:intron | 25.0% |
| ! | CAGTGAATAAATAAAAGGTA+AGG | + | chr5_1:55950720-55950739 | None:intergenic | 25.0% |
| ! | ACACACAGTGAATAAATAAA+AGG | + | chr5_1:55950725-55950744 | None:intergenic | 25.0% |
| !!! | TTTTTTGTGTTGTCAAATAG+CGG | - | chr5_1:55950811-55950830 | Msa0738230:CDS | 25.0% |
| !!! | AAGTTTGTTAAAATTCCACT+AGG | + | chr5_1:55951098-55951117 | None:intergenic | 25.0% |
| !!! | TGCTAATACTGTTTTTGTTA+TGG | - | chr5_1:55951139-55951158 | Msa0738230:intron | 25.0% |
| !!! | ATACTGTTTTTGTTATGGTT+TGG | - | chr5_1:55951144-55951163 | Msa0738230:intron | 25.0% |
| !!! | TTGTTTTAATTGAAAGTTGG+AGG | - | chr5_1:55951336-55951355 | Msa0738230:intron | 25.0% |
| ! | ATTTATGTGAAAAGGGATAT+GGG | - | chr5_1:55951382-55951401 | Msa0738230:intron | 25.0% |
| !! | TTCAATTAGCAAGTTTCTTT+TGG | - | chr5_1:55951766-55951785 | Msa0738230:intron | 25.0% |
| !!! | AATGTCTGGTTAGTTTATTT+AGG | - | chr5_1:55951813-55951832 | Msa0738230:CDS | 25.0% |
| ! | TTCAATACTCACTTTCTTAT+TGG | - | chr5_1:55952070-55952089 | Msa0738230:intron | 25.0% |
| ! | AACATCCAAATTAAGATTCA+AGG | + | chr5_1:55952203-55952222 | None:intergenic | 25.0% |
| !! | CGATTTTGTGATAACTTTTA+TGG | - | chr5_1:55952539-55952558 | Msa0738230:intron | 25.0% |
| ! | ATTGCCACAATAATGAATTA+GGG | + | chr5_1:55952634-55952653 | None:intergenic | 25.0% |
| ! | AATTGCCACAATAATGAATT+AGG | + | chr5_1:55952635-55952654 | None:intergenic | 25.0% |
| ! | TTATATTATGACTTTACACG+AGG | - | chr5_1:55952745-55952764 | Msa0738230:CDS | 25.0% |
| !!! | TGTAATAGACTTTTTTTCGA+AGG | - | chr5_1:55952854-55952873 | Msa0738230:intron | 25.0% |
| ! | GATCAATACTAATATGTGAT+TGG | + | chr5_1:55952994-55953013 | None:intergenic | 25.0% |
| !!! | ACGTTTTATTATTTTTGCGT+TGG | + | chr5_1:55953016-55953035 | None:intergenic | 25.0% |
| ! | AAAAAATTAGGGTTTAACGA+AGG | + | chr5_1:55950446-55950465 | None:intergenic | 25.0% |
| !! | TGTTAATTGGGATTGAATTT+TGG | - | chr5_1:55950526-55950545 | Msa0738230:CDS | 25.0% |
| !! | TTTTGGATTGTAGGTTATAA+CGG | - | chr5_1:55950543-55950562 | Msa0738230:intron | 25.0% |
| ! | ATGTGAAATTGAGCAATATT+AGG | - | chr5_1:55950584-55950603 | Msa0738230:intron | 25.0% |
| ! | CAGTGAATAAATAAAAGGTA+AGG | + | chr5_1:55950720-55950739 | None:intergenic | 25.0% |
| ! | ACACACAGTGAATAAATAAA+AGG | + | chr5_1:55950725-55950744 | None:intergenic | 25.0% |
| !!! | TTTTTTGTGTTGTCAAATAG+CGG | - | chr5_1:55950811-55950830 | Msa0738230:CDS | 25.0% |
| !!! | AAGTTTGTTAAAATTCCACT+AGG | + | chr5_1:55951098-55951117 | None:intergenic | 25.0% |
| !!! | TGCTAATACTGTTTTTGTTA+TGG | - | chr5_1:55951139-55951158 | Msa0738230:intron | 25.0% |
| !!! | ATACTGTTTTTGTTATGGTT+TGG | - | chr5_1:55951144-55951163 | Msa0738230:intron | 25.0% |
| !!! | TTGTTTTAATTGAAAGTTGG+AGG | - | chr5_1:55951336-55951355 | Msa0738230:intron | 25.0% |
| ! | ATTTATGTGAAAAGGGATAT+GGG | - | chr5_1:55951382-55951401 | Msa0738230:intron | 25.0% |
| !! | TTCAATTAGCAAGTTTCTTT+TGG | - | chr5_1:55951766-55951785 | Msa0738230:intron | 25.0% |
| !!! | AATGTCTGGTTAGTTTATTT+AGG | - | chr5_1:55951813-55951832 | Msa0738230:CDS | 25.0% |
| ! | TTCAATACTCACTTTCTTAT+TGG | - | chr5_1:55952070-55952089 | Msa0738230:intron | 25.0% |
| ! | AACATCCAAATTAAGATTCA+AGG | + | chr5_1:55952203-55952222 | None:intergenic | 25.0% |
| ! | ATAAGATATAAAAGCCAAGT+TGG | + | chr5_1:55955380-55955399 | None:intergenic | 25.0% |
| !! | CTATGTGAACGATTTTATAA+AGG | + | chr5_1:55955578-55955597 | None:intergenic | 25.0% |
| !!! | TTAATACTGATTCATATGTC+CGG | + | chr5_1:55955604-55955623 | None:intergenic | 25.0% |
| ! | TATAAACATGTATTTGGATG+TGG | - | chr5_1:55955822-55955841 | Msa0738230:CDS | 25.0% |
| !!! | TTTTCATCGGTTTATTTTAC+AGG | - | chr5_1:55955930-55955949 | Msa0738230:five_prime_UTR | 25.0% |
| ! | AATAACCATCAAATGGTTAT+AGG | + | chr5_1:55955964-55955983 | None:intergenic | 25.0% |
| TAATACGCACATAAAAACGA+AGG | - | chr5_1:55950243-55950262 | Msa0738230:three_prime_UTR | 30.0% | |
| TTTGGATTGTAGGTTATAAC+GGG | - | chr5_1:55950544-55950563 | Msa0738230:intron | 30.0% | |
| AAAGGTAAGGAAAGGATATA+AGG | + | chr5_1:55950707-55950726 | None:intergenic | 30.0% | |
| ! | ATTCCAAATTTTCTCTCACT+AGG | + | chr5_1:55950780-55950799 | None:intergenic | 30.0% |
| ! | CCATTTTCTTAAATTAGTGC+TGG | + | chr5_1:55950907-55950926 | None:intergenic | 30.0% |
| CCAGCACTAATTTAAGAAAA+TGG | - | chr5_1:55950904-55950923 | Msa0738230:intron | 30.0% | |
| ! | CTTCTATTTTCTGTGATTTG+TGG | - | chr5_1:55951115-55951134 | Msa0738230:intron | 30.0% |
| !! | TGTTTTTGTTATGGTTTGGA+TGG | - | chr5_1:55951148-55951167 | Msa0738230:intron | 30.0% |
| !! | GTTTTTGTTATGGTTTGGAT+GGG | - | chr5_1:55951149-55951168 | Msa0738230:intron | 30.0% |
| !! | TTTTTGTTATGGTTTGGATG+GGG | - | chr5_1:55951150-55951169 | Msa0738230:intron | 30.0% |
| ! | AATTGAAAGTTGGAGGTTTT+TGG | - | chr5_1:55951343-55951362 | Msa0738230:intron | 30.0% |
| GATTTATGTGAAAAGGGATA+TGG | - | chr5_1:55951381-55951400 | Msa0738230:intron | 30.0% | |
| CTAAAGCATGTTCCTTTAAA+TGG | - | chr5_1:55951573-55951592 | Msa0738230:intron | 30.0% | |
| !! | TTATTTCTATGTGTTGGAAG+TGG | + | chr5_1:55951650-55951669 | None:intergenic | 30.0% |
| AGACAAATAATGCTAATGTC+TGG | - | chr5_1:55951799-55951818 | Msa0738230:intron | 30.0% | |
| GGCAAATAAATGAATGCTAT+GGG | - | chr5_1:55952039-55952058 | Msa0738230:intron | 30.0% | |
| ATACTCACTTTCTTATTGGA+TGG | - | chr5_1:55952074-55952093 | Msa0738230:intron | 30.0% | |
| AGTTGCCTTGAATCTTAATT+TGG | - | chr5_1:55952195-55952214 | Msa0738230:intron | 30.0% | |
| GAAAGAAAAATAACGAAGGA+TGG | + | chr5_1:55952612-55952631 | None:intergenic | 30.0% | |
| TAGGGAAAGAAAAATAACGA+AGG | + | chr5_1:55952616-55952635 | None:intergenic | 30.0% | |
| CTTTCCCTAATTCATTATTG+TGG | - | chr5_1:55952627-55952646 | Msa0738230:CDS | 30.0% | |
| ATGTGATTGGATAGATTATG+TGG | + | chr5_1:55952981-55953000 | None:intergenic | 30.0% | |
| TAATACGCACATAAAAACGA+AGG | - | chr5_1:55950243-55950262 | Msa0738230:three_prime_UTR | 30.0% | |
| TTTGGATTGTAGGTTATAAC+GGG | - | chr5_1:55950544-55950563 | Msa0738230:intron | 30.0% | |
| AAAGGTAAGGAAAGGATATA+AGG | + | chr5_1:55950707-55950726 | None:intergenic | 30.0% | |
| ! | ATTCCAAATTTTCTCTCACT+AGG | + | chr5_1:55950780-55950799 | None:intergenic | 30.0% |
| ! | CCATTTTCTTAAATTAGTGC+TGG | + | chr5_1:55950907-55950926 | None:intergenic | 30.0% |
| CCAGCACTAATTTAAGAAAA+TGG | - | chr5_1:55950904-55950923 | Msa0738230:intron | 30.0% | |
| ! | CTTCTATTTTCTGTGATTTG+TGG | - | chr5_1:55951115-55951134 | Msa0738230:intron | 30.0% |
| !! | TGTTTTTGTTATGGTTTGGA+TGG | - | chr5_1:55951148-55951167 | Msa0738230:intron | 30.0% |
| !! | GTTTTTGTTATGGTTTGGAT+GGG | - | chr5_1:55951149-55951168 | Msa0738230:intron | 30.0% |
| !! | TTTTTGTTATGGTTTGGATG+GGG | - | chr5_1:55951150-55951169 | Msa0738230:intron | 30.0% |
| ! | AATTGAAAGTTGGAGGTTTT+TGG | - | chr5_1:55951343-55951362 | Msa0738230:intron | 30.0% |
| GATTTATGTGAAAAGGGATA+TGG | - | chr5_1:55951381-55951400 | Msa0738230:intron | 30.0% | |
| CTAAAGCATGTTCCTTTAAA+TGG | - | chr5_1:55951573-55951592 | Msa0738230:intron | 30.0% | |
| !! | TTATTTCTATGTGTTGGAAG+TGG | + | chr5_1:55951650-55951669 | None:intergenic | 30.0% |
| AGACAAATAATGCTAATGTC+TGG | - | chr5_1:55951799-55951818 | Msa0738230:intron | 30.0% | |
| GGCAAATAAATGAATGCTAT+GGG | - | chr5_1:55952039-55952058 | Msa0738230:intron | 30.0% | |
| ATACTCACTTTCTTATTGGA+TGG | - | chr5_1:55952074-55952093 | Msa0738230:intron | 30.0% | |
| AGTTGCCTTGAATCTTAATT+TGG | - | chr5_1:55952195-55952214 | Msa0738230:intron | 30.0% | |
| GTATACATGTCAGAAAATCT+GGG | + | chr5_1:55955454-55955473 | None:intergenic | 30.0% | |
| ! | CGATTTTATAAAGGGATGAA+GGG | + | chr5_1:55955569-55955588 | None:intergenic | 30.0% |
| ! | ACGATTTTATAAAGGGATGA+AGG | + | chr5_1:55955570-55955589 | None:intergenic | 30.0% |
| !!! | GCATCAATCTGTTTTTTGTT+TGG | - | chr5_1:55955654-55955673 | Msa0738230:CDS | 30.0% |
| AGTTTCCTATAACCATTTGA+TGG | - | chr5_1:55955956-55955975 | Msa0738230:five_prime_UTR | 30.0% | |
| ! | TGCACGTCATTGTAAGATTT+TGG | + | chr5_1:55950162-55950181 | None:intergenic | 35.0% |
| TTCAGTTTCTTCTTCTCATC+TGG | - | chr5_1:55950304-55950323 | Msa0738230:three_prime_UTR | 35.0% | |
| TCAGTTTCTTCTTCTCATCT+GGG | - | chr5_1:55950305-55950324 | Msa0738230:three_prime_UTR | 35.0% | |
| ! | GGGATTGAATTTTGGATTGT+AGG | - | chr5_1:55950534-55950553 | Msa0738230:CDS | 35.0% |
| ! | AGCAATATTAGGTTGTTGCT+TGG | - | chr5_1:55950595-55950614 | Msa0738230:intron | 35.0% |
| ! | GCAATATTAGGTTGTTGCTT+GGG | - | chr5_1:55950596-55950615 | Msa0738230:intron | 35.0% |
| ! | GTTTTACAAGAAGAAGTTCC+CGG | - | chr5_1:55950651-55950670 | Msa0738230:intron | 35.0% |
| ATGCCTAGTGAGAGAAAATT+TGG | - | chr5_1:55950774-55950793 | Msa0738230:CDS | 35.0% | |
| !! | ACGGTTTTGATCAGATTTGT+CGG | - | chr5_1:55950974-55950993 | Msa0738230:intron | 35.0% |
| ! | GAGAACTCTTGTTTGTATGT+AGG | - | chr5_1:55951216-55951235 | Msa0738230:intron | 35.0% |
| GAGTGTGTGTTCAAATTGAA+AGG | - | chr5_1:55951238-55951257 | Msa0738230:intron | 35.0% | |
| TACGTATGTAGTCTTCAACT+TGG | - | chr5_1:55951468-55951487 | Msa0738230:intron | 35.0% | |
| CAGAGGATAAGTAAACAGAA+TGG | + | chr5_1:55951530-55951549 | None:intergenic | 35.0% | |
| TTGAATCAGTGCACAAAACA+GGG | + | chr5_1:55951601-55951620 | None:intergenic | 35.0% | |
| ATTGAATCAGTGCACAAAAC+AGG | + | chr5_1:55951602-55951621 | None:intergenic | 35.0% | |
| !! | GTGTTGGAAGTGGATTAAAA+CGG | + | chr5_1:55951640-55951659 | None:intergenic | 35.0% |
| ! | ATTTTGTGTCTGTTAGAGAG+AGG | - | chr5_1:55951710-55951729 | Msa0738230:intron | 35.0% |
| ! | TTTTGTGTCTGTTAGAGAGA+GGG | - | chr5_1:55951711-55951730 | Msa0738230:intron | 35.0% |
| ! | TTTAGGACTGTGCTATAGTA+AGG | - | chr5_1:55951830-55951849 | Msa0738230:CDS | 35.0% |
| CAAATAGCTGAAACTAATCG+TGG | - | chr5_1:55951956-55951975 | Msa0738230:intron | 35.0% | |
| GGGCAAATAAATGAATGCTA+TGG | - | chr5_1:55952038-55952057 | Msa0738230:intron | 35.0% | |
| CTTATTGGATGGAATCAATG+TGG | - | chr5_1:55952085-55952104 | Msa0738230:intron | 35.0% | |
| CTAACATCCACTCTCTTATT+GGG | + | chr5_1:55952167-55952186 | None:intergenic | 35.0% | |
| TCTAACATCCACTCTCTTAT+TGG | + | chr5_1:55952168-55952187 | None:intergenic | 35.0% | |
| ATGTAATGATGCAAACTGTG+TGG | - | chr5_1:55952284-55952303 | Msa0738230:intron | 35.0% | |
| TTTACACGAGGTCATAAAAG+TGG | - | chr5_1:55952757-55952776 | Msa0738230:CDS | 35.0% | |
| AGAATTAGACTTCCATCCAA+TGG | - | chr5_1:55952948-55952967 | Msa0738230:CDS | 35.0% | |
| ATTATGTGGCGAAATACCAT+TGG | + | chr5_1:55952967-55952986 | None:intergenic | 35.0% | |
| ! | TGCACGTCATTGTAAGATTT+TGG | + | chr5_1:55950162-55950181 | None:intergenic | 35.0% |
| TTCAGTTTCTTCTTCTCATC+TGG | - | chr5_1:55950304-55950323 | Msa0738230:three_prime_UTR | 35.0% | |
| TCAGTTTCTTCTTCTCATCT+GGG | - | chr5_1:55950305-55950324 | Msa0738230:three_prime_UTR | 35.0% | |
| ! | GGGATTGAATTTTGGATTGT+AGG | - | chr5_1:55950534-55950553 | Msa0738230:CDS | 35.0% |
| ! | AGCAATATTAGGTTGTTGCT+TGG | - | chr5_1:55950595-55950614 | Msa0738230:intron | 35.0% |
| ! | GCAATATTAGGTTGTTGCTT+GGG | - | chr5_1:55950596-55950615 | Msa0738230:intron | 35.0% |
| ! | GTTTTACAAGAAGAAGTTCC+CGG | - | chr5_1:55950651-55950670 | Msa0738230:intron | 35.0% |
| ATGCCTAGTGAGAGAAAATT+TGG | - | chr5_1:55950774-55950793 | Msa0738230:CDS | 35.0% | |
| !! | ACGGTTTTGATCAGATTTGT+CGG | - | chr5_1:55950974-55950993 | Msa0738230:intron | 35.0% |
| ! | GAGAACTCTTGTTTGTATGT+AGG | - | chr5_1:55951216-55951235 | Msa0738230:intron | 35.0% |
| GAGTGTGTGTTCAAATTGAA+AGG | - | chr5_1:55951238-55951257 | Msa0738230:intron | 35.0% | |
| TACGTATGTAGTCTTCAACT+TGG | - | chr5_1:55951468-55951487 | Msa0738230:intron | 35.0% | |
| CAGAGGATAAGTAAACAGAA+TGG | + | chr5_1:55951530-55951549 | None:intergenic | 35.0% | |
| TTGAATCAGTGCACAAAACA+GGG | + | chr5_1:55951601-55951620 | None:intergenic | 35.0% | |
| ATTGAATCAGTGCACAAAAC+AGG | + | chr5_1:55951602-55951621 | None:intergenic | 35.0% | |
| !! | GTGTTGGAAGTGGATTAAAA+CGG | + | chr5_1:55951640-55951659 | None:intergenic | 35.0% |
| ! | ATTTTGTGTCTGTTAGAGAG+AGG | - | chr5_1:55951710-55951729 | Msa0738230:intron | 35.0% |
| ! | TTTTGTGTCTGTTAGAGAGA+GGG | - | chr5_1:55951711-55951730 | Msa0738230:intron | 35.0% |
| ! | TTTAGGACTGTGCTATAGTA+AGG | - | chr5_1:55951830-55951849 | Msa0738230:CDS | 35.0% |
| CAAATAGCTGAAACTAATCG+TGG | - | chr5_1:55951956-55951975 | Msa0738230:intron | 35.0% | |
| GGGCAAATAAATGAATGCTA+TGG | - | chr5_1:55952038-55952057 | Msa0738230:intron | 35.0% | |
| CTTATTGGATGGAATCAATG+TGG | - | chr5_1:55952085-55952104 | Msa0738230:intron | 35.0% | |
| CTAACATCCACTCTCTTATT+GGG | + | chr5_1:55952167-55952186 | None:intergenic | 35.0% | |
| TCTAACATCCACTCTCTTAT+TGG | + | chr5_1:55952168-55952187 | None:intergenic | 35.0% | |
| ATGTAATGATGCAAACTGTG+TGG | - | chr5_1:55952284-55952303 | Msa0738230:intron | 35.0% | |
| ! | CTCATGTTTTGTCTTTGTAG+TGG | - | chr5_1:55955208-55955227 | Msa0738230:intron | 35.0% |
| AGAAAATCTGGGTAATTTGG+AGG | + | chr5_1:55955443-55955462 | None:intergenic | 35.0% | |
| GTCAGAAAATCTGGGTAATT+TGG | + | chr5_1:55955446-55955465 | None:intergenic | 35.0% | |
| CGTATACATGTCAGAAAATC+TGG | + | chr5_1:55955455-55955474 | None:intergenic | 35.0% | |
| !! | TCGTTTGCAGAAACTGATTT+TGG | + | chr5_1:55955499-55955518 | None:intergenic | 35.0% |
| ! | ACACTTTTGGTAAGATGTAC+TGG | + | chr5_1:55955523-55955542 | None:intergenic | 35.0% |
| GGAAAAAGAGAAATACCACT+GGG | + | chr5_1:55955548-55955567 | None:intergenic | 35.0% | |
| AAAATCGTTCACATAGACAC+CGG | - | chr5_1:55955582-55955601 | Msa0738230:CDS | 35.0% | |
| !!! | TAATGCGTGCACTGATTTTT+TGG | - | chr5_1:55955621-55955640 | Msa0738230:CDS | 35.0% |
| !!! | CTGTTTTTTGTTTGGATTCC+AGG | - | chr5_1:55955662-55955681 | Msa0738230:CDS | 35.0% |
| TCAGCGAAGAATTCGAAACA+TGG | - | chr5_1:55950340-55950359 | Msa0738230:three_prime_UTR | 40.0% | |
| ATTCGAAACATGGCAACCAA+AGG | - | chr5_1:55950350-55950369 | Msa0738230:three_prime_UTR | 40.0% | |
| ATTCGCTTTCTTCTGTCCTT+TGG | + | chr5_1:55950369-55950388 | None:intergenic | 40.0% | |
| CGAGAATGTGCTTGATTGAA+TGG | + | chr5_1:55950403-55950422 | None:intergenic | 40.0% | |
| AGAAGAAAATCGCGATTCTC+CGG | + | chr5_1:55950673-55950692 | None:intergenic | 40.0% | |
| !! | TGTGTTGTCAAATAGCGGAT+AGG | - | chr5_1:55950816-55950835 | Msa0738230:intron | 40.0% |
| !! | GTGTTGTCAAATAGCGGATA+GGG | - | chr5_1:55950817-55950836 | Msa0738230:intron | 40.0% |
| ACAAACCACTTACACAGACA+CGG | - | chr5_1:55950853-55950872 | Msa0738230:intron | 40.0% | |
| ATCAAAACCGTAACTGACAC+TGG | + | chr5_1:55950965-55950984 | None:intergenic | 40.0% | |
| CGCGTATTGTGAAACAATAG+TGG | + | chr5_1:55951013-55951032 | None:intergenic | 40.0% | |
| ACTATATCACTGTAGCCTAG+TGG | - | chr5_1:55951080-55951099 | Msa0738230:intron | 40.0% | |
| CATCGCACTCTACTTCAAAA+AGG | + | chr5_1:55951310-55951329 | None:intergenic | 40.0% | |
| !!! | TTTTGAAGTAGAGTGCGATG+TGG | - | chr5_1:55951310-55951329 | Msa0738230:intron | 40.0% |
| GCAGCTGATCATATACACTA+AGG | - | chr5_1:55951495-55951514 | Msa0738230:intron | 40.0% | |
| TCACAGAAACTTACAGTCAG+AGG | + | chr5_1:55951547-55951566 | None:intergenic | 40.0% | |
| TGAATCAGTGCACAAAACAG+GGG | + | chr5_1:55951600-55951619 | None:intergenic | 40.0% | |
| !! | GCAAGTTTCTTTTGGTCTTC+TGG | - | chr5_1:55951774-55951793 | Msa0738230:intron | 40.0% |
| TGGGTGCTTCATGTTTATCA+TGG | + | chr5_1:55951910-55951929 | None:intergenic | 40.0% | |
| ! | ATGAAGCACCCATGTTAAAC+AGG | - | chr5_1:55951918-55951937 | Msa0738230:intron | 40.0% |
| ! | TGAAGCACCCATGTTAAACA+GGG | - | chr5_1:55951919-55951938 | Msa0738230:intron | 40.0% |
| TGGGTTTCACATAAAGTGGT+AGG | + | chr5_1:55952113-55952132 | None:intergenic | 40.0% | |
| ! | GGAATGGGTTTCACATAAAG+TGG | + | chr5_1:55952117-55952136 | None:intergenic | 40.0% |
| CAATGTGAGTCCTACACTTT+GGG | + | chr5_1:55952138-55952157 | None:intergenic | 40.0% | |
| TCAATGTGAGTCCTACACTT+TGG | + | chr5_1:55952139-55952158 | None:intergenic | 40.0% | |
| GATTACACCCAATAAGAGAG+TGG | - | chr5_1:55952157-55952176 | Msa0738230:intron | 40.0% | |
| TTCTCTAGTGTCAATTTCCG+TGG | - | chr5_1:55952705-55952724 | Msa0738230:CDS | 40.0% | |
| TCTCTAGTGTCAATTTCCGT+GGG | - | chr5_1:55952706-55952725 | Msa0738230:CDS | 40.0% | |
| TCAGCGAAGAATTCGAAACA+TGG | - | chr5_1:55950340-55950359 | Msa0738230:three_prime_UTR | 40.0% | |
| ATTCGAAACATGGCAACCAA+AGG | - | chr5_1:55950350-55950369 | Msa0738230:three_prime_UTR | 40.0% | |
| ATTCGCTTTCTTCTGTCCTT+TGG | + | chr5_1:55950369-55950388 | None:intergenic | 40.0% | |
| CGAGAATGTGCTTGATTGAA+TGG | + | chr5_1:55950403-55950422 | None:intergenic | 40.0% | |
| AGAAGAAAATCGCGATTCTC+CGG | + | chr5_1:55950673-55950692 | None:intergenic | 40.0% | |
| !! | TGTGTTGTCAAATAGCGGAT+AGG | - | chr5_1:55950816-55950835 | Msa0738230:intron | 40.0% |
| !! | GTGTTGTCAAATAGCGGATA+GGG | - | chr5_1:55950817-55950836 | Msa0738230:intron | 40.0% |
| ACAAACCACTTACACAGACA+CGG | - | chr5_1:55950853-55950872 | Msa0738230:intron | 40.0% | |
| ATCAAAACCGTAACTGACAC+TGG | + | chr5_1:55950965-55950984 | None:intergenic | 40.0% | |
| CGCGTATTGTGAAACAATAG+TGG | + | chr5_1:55951013-55951032 | None:intergenic | 40.0% | |
| ACTATATCACTGTAGCCTAG+TGG | - | chr5_1:55951080-55951099 | Msa0738230:intron | 40.0% | |
| CATCGCACTCTACTTCAAAA+AGG | + | chr5_1:55951310-55951329 | None:intergenic | 40.0% | |
| !!! | TTTTGAAGTAGAGTGCGATG+TGG | - | chr5_1:55951310-55951329 | Msa0738230:intron | 40.0% |
| GCAGCTGATCATATACACTA+AGG | - | chr5_1:55951495-55951514 | Msa0738230:intron | 40.0% | |
| TCACAGAAACTTACAGTCAG+AGG | + | chr5_1:55951547-55951566 | None:intergenic | 40.0% | |
| TGAATCAGTGCACAAAACAG+GGG | + | chr5_1:55951600-55951619 | None:intergenic | 40.0% | |
| !! | GCAAGTTTCTTTTGGTCTTC+TGG | - | chr5_1:55951774-55951793 | Msa0738230:intron | 40.0% |
| TGGGTGCTTCATGTTTATCA+TGG | + | chr5_1:55951910-55951929 | None:intergenic | 40.0% | |
| ! | ATGAAGCACCCATGTTAAAC+AGG | - | chr5_1:55951918-55951937 | Msa0738230:intron | 40.0% |
| ! | TGAAGCACCCATGTTAAACA+GGG | - | chr5_1:55951919-55951938 | Msa0738230:intron | 40.0% |
| TGGGTTTCACATAAAGTGGT+AGG | + | chr5_1:55952113-55952132 | None:intergenic | 40.0% | |
| ! | GGAATGGGTTTCACATAAAG+TGG | + | chr5_1:55952117-55952136 | None:intergenic | 40.0% |
| CAATGTGAGTCCTACACTTT+GGG | + | chr5_1:55952138-55952157 | None:intergenic | 40.0% | |
| TCAATGTGAGTCCTACACTT+TGG | + | chr5_1:55952139-55952158 | None:intergenic | 40.0% | |
| GATTACACCCAATAAGAGAG+TGG | - | chr5_1:55952157-55952176 | Msa0738230:intron | 40.0% | |
| ! | GAGTATTGTGTGTTCCAACT+TGG | - | chr5_1:55955363-55955382 | Msa0738230:intron | 40.0% |
| TTTGGAGGAAACTACCAAAC+CGG | + | chr5_1:55955428-55955447 | None:intergenic | 40.0% | |
| ! | TTTTGGATCTGCGCTTTCTA+TGG | + | chr5_1:55955482-55955501 | None:intergenic | 40.0% |
| !! | TTACCAAAAGTGTTACCCAG+TGG | - | chr5_1:55955530-55955549 | Msa0738230:CDS | 40.0% |
| ! | ATACCACTGGGTAACACTTT+TGG | + | chr5_1:55955536-55955555 | None:intergenic | 40.0% |
| GGGAAAAAGAGAAATACCAC+TGG | + | chr5_1:55955549-55955568 | None:intergenic | 40.0% | |
| TTTGGATTCCAGGTTCACTA+AGG | - | chr5_1:55955672-55955691 | Msa0738230:intron | 40.0% | |
| CCATATCACTTGCTCTTCTT+TGG | + | chr5_1:55955766-55955785 | None:intergenic | 40.0% | |
| CCAAAGAAGAGCAAGTGATA+TGG | - | chr5_1:55955763-55955782 | Msa0738230:intron | 40.0% | |
| !! | TTGTAGGTTATAACGGGTCG+TGG | - | chr5_1:55950550-55950569 | Msa0738230:intron | 45.0% |
| !! | TGTAGGTTATAACGGGTCGT+GGG | - | chr5_1:55950551-55950570 | Msa0738230:intron | 45.0% |
| GAAGAAAATCGCGATTCTCC+GGG | + | chr5_1:55950672-55950691 | None:intergenic | 45.0% | |
| TTGACATGTAGTGTCGTCTC+TGG | + | chr5_1:55950882-55950901 | None:intergenic | 45.0% | |
| TGTTGTGCCAGTGTCAGTTA+CGG | - | chr5_1:55950955-55950974 | Msa0738230:intron | 45.0% | |
| CTACATACGTACGAGAGTCA+AGG | + | chr5_1:55951459-55951478 | None:intergenic | 45.0% | |
| CAAAACAGGGGGCCATTTAA+AGG | + | chr5_1:55951588-55951607 | None:intergenic | 45.0% | |
| GAATCAGTGCACAAAACAGG+GGG | + | chr5_1:55951599-55951618 | None:intergenic | 45.0% | |
| CGTGTAGCCCTGTTTAACAT+GGG | + | chr5_1:55951929-55951948 | None:intergenic | 45.0% | |
| TCGTGTAGCCCTGTTTAACA+TGG | + | chr5_1:55951930-55951949 | None:intergenic | 45.0% | |
| GAAACCCATTCCCAAAGTGT+AGG | - | chr5_1:55952125-55952144 | Msa0738230:intron | 45.0% | |
| ! | GAGTCCTACACTTTGGGAAT+GGG | + | chr5_1:55952132-55952151 | None:intergenic | 45.0% |
| ! | TGAGTCCTACACTTTGGGAA+TGG | + | chr5_1:55952133-55952152 | None:intergenic | 45.0% |
| CTCTATATGGACTCAACCCA+CGG | + | chr5_1:55952725-55952744 | None:intergenic | 45.0% | |
| GAGGTCATAAAAGTGGACGA+TGG | - | chr5_1:55952764-55952783 | Msa0738230:CDS | 45.0% | |
| TGTGGCGAAATACCATTGGA+TGG | + | chr5_1:55952963-55952982 | None:intergenic | 45.0% | |
| !! | TTGTAGGTTATAACGGGTCG+TGG | - | chr5_1:55950550-55950569 | Msa0738230:intron | 45.0% |
| !! | TGTAGGTTATAACGGGTCGT+GGG | - | chr5_1:55950551-55950570 | Msa0738230:intron | 45.0% |
| GAAGAAAATCGCGATTCTCC+GGG | + | chr5_1:55950672-55950691 | None:intergenic | 45.0% | |
| TTGACATGTAGTGTCGTCTC+TGG | + | chr5_1:55950882-55950901 | None:intergenic | 45.0% | |
| TGTTGTGCCAGTGTCAGTTA+CGG | - | chr5_1:55950955-55950974 | Msa0738230:intron | 45.0% | |
| CTACATACGTACGAGAGTCA+AGG | + | chr5_1:55951459-55951478 | None:intergenic | 45.0% | |
| CAAAACAGGGGGCCATTTAA+AGG | + | chr5_1:55951588-55951607 | None:intergenic | 45.0% | |
| GAATCAGTGCACAAAACAGG+GGG | + | chr5_1:55951599-55951618 | None:intergenic | 45.0% | |
| CGTGTAGCCCTGTTTAACAT+GGG | + | chr5_1:55951929-55951948 | None:intergenic | 45.0% | |
| TCGTGTAGCCCTGTTTAACA+TGG | + | chr5_1:55951930-55951949 | None:intergenic | 45.0% | |
| GAAACCCATTCCCAAAGTGT+AGG | - | chr5_1:55952125-55952144 | Msa0738230:intron | 45.0% | |
| ! | GAGTCCTACACTTTGGGAAT+GGG | + | chr5_1:55952132-55952151 | None:intergenic | 45.0% |
| ! | TGAGTCCTACACTTTGGGAA+TGG | + | chr5_1:55952133-55952152 | None:intergenic | 45.0% |
| TTTGTCTTTGTAGTGGCTGC+TGG | - | chr5_1:55955215-55955234 | Msa0738230:intron | 45.0% | |
| !! | TTCCTTTACCAGTACCGGTT+TGG | - | chr5_1:55955411-55955430 | Msa0738230:intron | 45.0% |
| !! | TACCAAACCGGTACTGGTAA+AGG | + | chr5_1:55955416-55955435 | None:intergenic | 45.0% |
| GATTCCAGGTTCACTAAGGA+TGG | - | chr5_1:55955676-55955695 | Msa0738230:intron | 45.0% | |
| GTTCACTAAGGATGGTGTCT+TGG | - | chr5_1:55955684-55955703 | Msa0738230:intron | 45.0% | |
| TAAGGATGGTGTCTTGGTTG+AGG | - | chr5_1:55955690-55955709 | Msa0738230:intron | 45.0% | |
| AAGGATGGTGTCTTGGTTGA+GGG | - | chr5_1:55955691-55955710 | Msa0738230:intron | 45.0% | |
| !!! | TTTATTAATTTTTTAAAACT+TGG | + | chr5_1:55952827-55952846 | None:intergenic | 5.0% |
| TCTCGATGAGTCTGCTTCTG+AGG | - | chr5_1:55950418-55950437 | Msa0738230:three_prime_UTR | 50.0% | |
| TCTCGATGAGTCTGCTTCTG+AGG | - | chr5_1:55950418-55950437 | Msa0738230:three_prime_UTR | 50.0% | |
| CAGGGTTCCTTTACCAGTAC+CGG | - | chr5_1:55955406-55955425 | Msa0738230:intron | 50.0% | |
| GGAAACTACCAAACCGGTAC+TGG | + | chr5_1:55955422-55955441 | None:intergenic | 50.0% | |
| GACACCATCCTTAGTGAACC+TGG | + | chr5_1:55955683-55955702 | None:intergenic | 50.0% | |
| CTTCGACATCCTTCCAGAAG+AGG | + | chr5_1:55955717-55955736 | None:intergenic | 50.0% | |
| AACGGGTCGTGGGTATGTTG+AGG | - | chr5_1:55950561-55950580 | Msa0738230:intron | 55.0% | |
| GGTGTCCGTGTCTGTGTAAG+TGG | + | chr5_1:55950861-55950880 | None:intergenic | 55.0% | |
| AACGGGTCGTGGGTATGTTG+AGG | - | chr5_1:55950561-55950580 | Msa0738230:intron | 55.0% | |
| GGTGTCCGTGTCTGTGTAAG+TGG | + | chr5_1:55950861-55950880 | None:intergenic | 55.0% | |
| TCTTGGTTGAGGGCCTCTTC+TGG | - | chr5_1:55955701-55955720 | Msa0738230:intron | 55.0% | |
| GGTTGAGGGCCTCTTCTGGA+AGG | - | chr5_1:55955705-55955724 | Msa0738230:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 55950159 | 55956081 | 55950159 | ID=Msa0738230;Name=Msa0738230 |
| chr5_1 | mRNA | 55950159 | 55956081 | 55950159 | ID=Msa0738230-mRNA-1;Parent=Msa0738230;Name=Msa0738230-mRNA-1;_AED=0.23;_eAED=0.23;_QI=200|0.5|0.33|0.88|1|1|9|301|343 |
| chr5_1 | exon | 55950159 | 55950556 | 55950159 | ID=Msa0738230-mRNA-1:exon:15854;Parent=Msa0738230-mRNA-1 |
| chr5_1 | exon | 55950689 | 55950831 | 55950689 | ID=Msa0738230-mRNA-1:exon:15853;Parent=Msa0738230-mRNA-1 |
| chr5_1 | exon | 55951803 | 55951876 | 55951803 | ID=Msa0738230-mRNA-1:exon:15852;Parent=Msa0738230-mRNA-1 |
| chr5_1 | exon | 55952606 | 55952798 | 55952606 | ID=Msa0738230-mRNA-1:exon:15851;Parent=Msa0738230-mRNA-1 |
| chr5_1 | exon | 55952915 | 55953045 | 55952915 | ID=Msa0738230-mRNA-1:exon:15850;Parent=Msa0738230-mRNA-1 |
| chr5_1 | exon | 55954420 | 55954465 | 55954420 | ID=Msa0738230-mRNA-1:exon:15849;Parent=Msa0738230-mRNA-1 |
| chr5_1 | exon | 55954688 | 55954761 | 55954688 | ID=Msa0738230-mRNA-1:exon:15848;Parent=Msa0738230-mRNA-1 |
| chr5_1 | exon | 55955492 | 55955684 | 55955492 | ID=Msa0738230-mRNA-1:exon:15847;Parent=Msa0738230-mRNA-1 |
| chr5_1 | exon | 55955801 | 55956081 | 55955801 | ID=Msa0738230-mRNA-1:exon:15846;Parent=Msa0738230-mRNA-1 |
| chr5_1 | five_prime_UTR | 55955882 | 55956081 | 55955882 | ID=Msa0738230-mRNA-1:five_prime_utr;Parent=Msa0738230-mRNA-1 |
| chr5_1 | CDS | 55955801 | 55955881 | 55955801 | ID=Msa0738230-mRNA-1:cds;Parent=Msa0738230-mRNA-1 |
| chr5_1 | CDS | 55955492 | 55955684 | 55955492 | ID=Msa0738230-mRNA-1:cds;Parent=Msa0738230-mRNA-1 |
| chr5_1 | CDS | 55954688 | 55954761 | 55954688 | ID=Msa0738230-mRNA-1:cds;Parent=Msa0738230-mRNA-1 |
| chr5_1 | CDS | 55954420 | 55954465 | 55954420 | ID=Msa0738230-mRNA-1:cds;Parent=Msa0738230-mRNA-1 |
| chr5_1 | CDS | 55952915 | 55953045 | 55952915 | ID=Msa0738230-mRNA-1:cds;Parent=Msa0738230-mRNA-1 |
| chr5_1 | CDS | 55952606 | 55952798 | 55952606 | ID=Msa0738230-mRNA-1:cds;Parent=Msa0738230-mRNA-1 |
| chr5_1 | CDS | 55951803 | 55951876 | 55951803 | ID=Msa0738230-mRNA-1:cds;Parent=Msa0738230-mRNA-1 |
| chr5_1 | CDS | 55950689 | 55950831 | 55950689 | ID=Msa0738230-mRNA-1:cds;Parent=Msa0738230-mRNA-1 |
| chr5_1 | CDS | 55950460 | 55950556 | 55950460 | ID=Msa0738230-mRNA-1:cds;Parent=Msa0738230-mRNA-1 |
| chr5_1 | three_prime_UTR | 55950159 | 55950459 | 55950159 | ID=Msa0738230-mRNA-1:three_prime_utr;Parent=Msa0738230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
