AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0423750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0423750 MtrunA17_Chr3g0125171 100.000 125 0 0 1 125 1 125 1.36e-85 245
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0423750 AT1G77350.1 74.590 122 30 1 1 121 1 122 3.32e-60 181
Msa0423750 AT1G77350.2 74.590 122 30 1 1 121 1 122 3.32e-60 181

Find 49 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACAATTTCATGGGTAAAT+TGG 0.199532 3_2:-73726634 Msa0423750:five_prime_UTR
TGAGAAGCCATGGCGGGGTC+TGG 0.324778 3_2:-73725789 Msa0423750:intron
CAGTTAGGAGCACAAGAAAT+AGG 0.332990 3_2:+73725646 None:intergenic
GATCATATTTAACTATTTGT+AGG 0.358164 3_2:-73726703 Msa0423750:five_prime_UTR
AGTACTTACCTACAATTTCA+TGG 0.359733 3_2:-73726643 Msa0423750:five_prime_UTR
CATCTTGTGAATCTTGAGTT+AGG 0.382414 3_2:-73726500 Msa0423750:intron
ATCTTATAAGTTATGATACT+AGG 0.383609 3_2:+73723608 None:intergenic
GAGACAGCCGGTGCAAAATC+TGG 0.384994 3_2:-73724971 Msa0423750:CDS
CAATTTACCCATGAAATTGT+AGG 0.390611 3_2:+73726635 None:intergenic
TGAATGCAGTTTCCTGTTCT+CGG 0.393893 3_2:-73723786 Msa0423750:intron
ATCATATTTAACTATTTGTA+GGG 0.414433 3_2:-73726702 Msa0423750:five_prime_UTR
GCAAAATCTGGCTGGGGTGC+TGG 0.425345 3_2:-73724959 Msa0423750:intron
TCGGAATTATTCACAATACT+TGG 0.430748 3_2:-73725687 Msa0423750:CDS
GAGAAGCCATGGCGGGGTCT+GGG 0.434467 3_2:-73725788 Msa0423750:intron
CTCGGCTGTGTTGCTCTATG+AGG 0.447834 3_2:-73723768 Msa0423750:CDS
TTGCTATGAGAAGCCATGGC+GGG 0.473545 3_2:-73725795 Msa0423750:intron
AGAGCAACACAGCCGAGAAC+AGG 0.475210 3_2:+73723774 None:intergenic
ACGTTCTAGTTTCGTTTCTA+CGG 0.475682 3_2:+73726562 None:intergenic
AGCCGGTGCAAAATCTGGCT+GGG 0.475968 3_2:-73724966 Msa0423750:CDS
CAGCCGGTGCAAAATCTGGC+TGG 0.479798 3_2:-73724967 Msa0423750:CDS
TTGTAAAACTATTGCGACTA+GGG 0.496217 3_2:+73723632 None:intergenic
GATGACAATGAATAGAAGAA+AGG 0.500365 3_2:+73725749 None:intergenic
CGAATACCCAAGGGCAATCT+CGG 0.501828 3_2:+73726585 None:intergenic
TATGAGGTTAACAAGCTCTC+TGG 0.505681 3_2:-73723752 Msa0423750:CDS
TTAAATACCGAGATTGCCCT+TGG 0.510093 3_2:-73726592 Msa0423750:five_prime_UTR
TAGAAGAAAGGAATACATCA+TGG 0.524516 3_2:+73725761 None:intergenic
GTTTCTACGGCGAATACCCA+AGG 0.531065 3_2:+73726575 None:intergenic
TCTTATAAGTTATGATACTA+GGG 0.531858 3_2:+73723609 None:intergenic
GAATTATTCACAATACTTGG+AGG 0.534232 3_2:-73725684 Msa0423750:CDS
GTACTTACCTACAATTTCAT+GGG 0.535831 3_2:-73726642 Msa0423750:five_prime_UTR
AATTATTCACAATACTTGGA+GGG 0.538766 3_2:-73725683 Msa0423750:CDS
ACCATGTAGTGATGCATACT+CGG 0.544399 3_2:+73724654 None:intergenic
GCCGGTGCAAAATCTGGCTG+GGG 0.558097 3_2:-73724965 Msa0423750:CDS
CCGTGGGAAACTTGCATCGT+CGG 0.565118 3_2:-73725706 Msa0423750:CDS
TGCTATGAGAAGCCATGGCG+GGG 0.568516 3_2:-73725794 Msa0423750:intron
TAAATACCGAGATTGCCCTT+GGG 0.585124 3_2:-73726591 Msa0423750:five_prime_UTR
CACTTCAAGAAATGTACCGT+GGG 0.587600 3_2:-73725722 Msa0423750:CDS
ACCGAGTATGCATCACTACA+TGG 0.601750 3_2:-73724655 Msa0423750:intron
GTTGTAAAACTATTGCGACT+AGG 0.603827 3_2:+73723631 None:intergenic
TCATATTTAACTATTTGTAG+GGG 0.610603 3_2:-73726701 Msa0423750:five_prime_UTR
GGAACTCCCAGACCCCGCCA+TGG 0.620572 3_2:+73725782 None:intergenic
AACGAAACTAGAACGTGTGA+AGG 0.623245 3_2:-73726555 Msa0423750:five_prime_UTR
GGTACATTTCTTGAAGTGAG+AGG 0.637005 3_2:+73725727 None:intergenic
TTTCTACGGCGAATACCCAA+GGG 0.644078 3_2:+73726576 None:intergenic
CCGACGATGCAAGTTTCCCA+CGG 0.661665 3_2:+73725706 None:intergenic
GGAGTCACTTGTTGAAACAG+CGG 0.662603 3_2:+73723727 None:intergenic
TCACTTCAAGAAATGTACCG+TGG 0.674064 3_2:-73725723 Msa0423750:CDS
ATGTAGTGATGCATACTCGG+TGG 0.725698 3_2:+73724657 None:intergenic
TTTGCTATGAGAAGCCATGG+CGG 0.727809 3_2:-73725796 Msa0423750:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTAATTTTACAATTATAT+TGG - chr3_2:73726634-73726653 Msa0423750:five_prime_UTR 10.0%
!! ATCATATTTAACTATTTGTA+GGG - chr3_2:73723494-73723513 Msa0423750:three_prime_UTR 15.0%
!! AGAAAACAAAAAATAAACAA+CGG + chr3_2:73723983-73724002 None:intergenic 15.0%
!!! TGTTTATTTTTTGTTTTCTT+CGG - chr3_2:73723984-73724003 Msa0423750:intron 15.0%
!!! TTACTTTGTTATAACTAATA+AGG - chr3_2:73724275-73724294 Msa0423750:intron 15.0%
!!! TACTTTGTTATAACTAATAA+GGG - chr3_2:73724276-73724295 Msa0423750:intron 15.0%
!! TAAAATAGATGTTATAGAAA+TGG + chr3_2:73724742-73724761 None:intergenic 15.0%
!!! AACTATTTCTTAAAAAGAAA+AGG - chr3_2:73725642-73725661 Msa0423750:intron 15.0%
!!! ACTATTTCTTAAAAAGAAAA+GGG - chr3_2:73725643-73725662 Msa0423750:intron 15.0%
!!! TTTTCAATGTAATTTGTTAT+TGG + chr3_2:73726107-73726126 None:intergenic 15.0%
!!! ATTTTACAATTATATTGGTA+TGG - chr3_2:73726639-73726658 Msa0423750:five_prime_UTR 15.0%
!! GATCATATTTAACTATTTGT+AGG - chr3_2:73723493-73723512 Msa0423750:three_prime_UTR 20.0%
!! TCATATTTAACTATTTGTAG+GGG - chr3_2:73723495-73723514 Msa0423750:three_prime_UTR 20.0%
!! AACATTATTATTAGATCCAT+TGG - chr3_2:73723936-73723955 Msa0423750:intron 20.0%
!! ACATTATTATTAGATCCATT+GGG - chr3_2:73723937-73723956 Msa0423750:intron 20.0%
!!! GTTTATTTTTTGTTTTCTTC+GGG - chr3_2:73723985-73724004 Msa0423750:intron 20.0%
!!! TTTATTTTTTGTTTTCTTCG+GGG - chr3_2:73723986-73724005 Msa0423750:intron 20.0%
!!! AATTAAGATACAATTTTCGT+TGG - chr3_2:73724033-73724052 Msa0423750:intron 20.0%
!!! ATGATTCTTTTTATGTTTCT+CGG - chr3_2:73724640-73724659 Msa0423750:intron 20.0%
!! TAATAAGATCATATAGTAGA+AGG - chr3_2:73724664-73724683 Msa0423750:CDS 20.0%
!! TTAATACTATTGTTAGTGTT+TGG - chr3_2:73724759-73724778 Msa0423750:intron 20.0%
!! TAATACTATTGTTAGTGTTT+GGG - chr3_2:73724760-73724779 Msa0423750:intron 20.0%
!! ATTTATTTGTACTTGTATGA+AGG - chr3_2:73724814-73724833 Msa0423750:intron 20.0%
!! GATAAAAGTAGTAACTTTAT+TGG + chr3_2:73724927-73724946 None:intergenic 20.0%
!!! ATATTTAAAGCAGACTATTT+GGG + chr3_2:73725092-73725111 None:intergenic 20.0%
!! AAAACAGAATGAGTATTAAT+TGG - chr3_2:73725332-73725351 Msa0423750:intron 20.0%
!!! TTCATTTCTTTTATTCTTTC+TGG - chr3_2:73725416-73725435 Msa0423750:intron 20.0%
!!! TTTAAAATATATGCGTGAAT+TGG + chr3_2:73725447-73725466 None:intergenic 20.0%
!! TTCCTATTTGTTCATTAATA+CGG + chr3_2:73725595-73725614 None:intergenic 20.0%
!! CAATGATACAATTAATTAAG+CGG - chr3_2:73725728-73725747 Msa0423750:CDS 20.0%
!! AATGATACAATTAATTAAGC+GGG - chr3_2:73725729-73725748 Msa0423750:CDS 20.0%
!! ATAGTTAGTAATACATGTAA+TGG - chr3_2:73725963-73725982 Msa0423750:intron 20.0%
!! TAGTTAGTAATACATGTAAT+GGG - chr3_2:73725964-73725983 Msa0423750:intron 20.0%
!! TTACATTGAAAAAGAAAATC+TGG - chr3_2:73726115-73726134 Msa0423750:intron 20.0%
!!! ATATAACATGCTTTTACTTT+AGG - chr3_2:73726162-73726181 Msa0423750:intron 20.0%
!! TCTTATAAGTTATGATACTA+GGG + chr3_2:73726590-73726609 None:intergenic 20.0%
!! ATCTTATAAGTTATGATACT+AGG + chr3_2:73726591-73726610 None:intergenic 20.0%
!! GTAATATAAAAATGACTGAT+TGG + chr3_2:73726697-73726716 None:intergenic 20.0%
!!! ATCAGTCATTTTTATATTAC+AGG - chr3_2:73726697-73726716 Msa0423750:five_prime_UTR 20.0%
! TTGCAACATTGAAAAAGATA+CGG - chr3_2:73723524-73723543 Msa0423750:three_prime_UTR 25.0%
! GAAATAAAATGAAGATCCAT+TGG + chr3_2:73723786-73723805 None:intergenic 25.0%
!! TGATCTCGTAATTTGAAATT+AGG - chr3_2:73723859-73723878 Msa0423750:intron 25.0%
! TCAATATAAGTCAAACCAAA+CGG - chr3_2:73724115-73724134 Msa0423750:intron 25.0%
! AATTATTCACAATACTTGGA+GGG - chr3_2:73724513-73724532 Msa0423750:intron 25.0%
! AAGCTTCAAAGATAAGAAAA+TGG + chr3_2:73724604-73724623 None:intergenic 25.0%
!! TGATTCTTTTTATGTTTCTC+GGG - chr3_2:73724641-73724660 Msa0423750:intron 25.0%
!! CATTTGATGCATTTTATTAG+AGG + chr3_2:73724844-73724863 None:intergenic 25.0%
! TTCAATTTACAAAATGGAAC+TGG + chr3_2:73724884-73724903 None:intergenic 25.0%
! TCTGACTTCAATTTACAAAA+TGG + chr3_2:73724890-73724909 None:intergenic 25.0%
! TTTATCACTTCATAGTTCAT+AGG - chr3_2:73724941-73724960 Msa0423750:intron 25.0%
!! GATATTTAAAGCAGACTATT+TGG + chr3_2:73725093-73725112 None:intergenic 25.0%
!! CTCACATTTACATTACATTT+TGG - chr3_2:73725178-73725197 Msa0423750:intron 25.0%
! TCCTATTTGTTCATTAATAC+GGG + chr3_2:73725594-73725613 None:intergenic 25.0%
! CGCTTAATTAATTGTATCAT+TGG + chr3_2:73725730-73725749 None:intergenic 25.0%
! ATGATACAATTAATTAAGCG+GGG - chr3_2:73725730-73725749 Msa0423750:CDS 25.0%
!!! ACTATAAGTTGATTAGTTGA+AGG + chr3_2:73725799-73725818 None:intergenic 25.0%
! TCAACACATTATATCTGTTT+AGG + chr3_2:73725894-73725913 None:intergenic 25.0%
! TTTATAAGAACATGTTCCAA+AGG + chr3_2:73725998-73726017 None:intergenic 25.0%
! TTGAATTCTAGATATTCTGT+TGG - chr3_2:73726072-73726091 Msa0423750:intron 25.0%
! TGAATTCTAGATATTCTGTT+GGG - chr3_2:73726073-73726092 Msa0423750:intron 25.0%
!!! GCTATTTTACAAAAAGCTTT+AGG + chr3_2:73726207-73726226 None:intergenic 25.0%
! TAAATAACAGACTATGACAA+TGG + chr3_2:73726258-73726277 None:intergenic 25.0%
! CATTAGAATAACATCAACAA+TGG + chr3_2:73726381-73726400 None:intergenic 25.0%
TGCAACATTGAAAAAGATAC+GGG - chr3_2:73723525-73723544 Msa0423750:three_prime_UTR 30.0%
AGTACTTACCTACAATTTCA+TGG - chr3_2:73723553-73723572 Msa0423750:three_prime_UTR 30.0%
GTACTTACCTACAATTTCAT+GGG - chr3_2:73723554-73723573 Msa0423750:three_prime_UTR 30.0%
CAATTTACCCATGAAATTGT+AGG + chr3_2:73723564-73723583 None:intergenic 30.0%
CTACAATTTCATGGGTAAAT+TGG - chr3_2:73723562-73723581 Msa0423750:three_prime_UTR 30.0%
CAATATAAGTCAAACCAAAC+GGG - chr3_2:73724116-73724135 Msa0423750:intron 30.0%
! TCATTCTTGAGTGATACTTT+TGG - chr3_2:73724336-73724355 Msa0423750:intron 30.0%
!!! TGAGTGATACTTTTGGTTTT+CGG - chr3_2:73724343-73724362 Msa0423750:intron 30.0%
TAGAAGAAAGGAATACATCA+TGG + chr3_2:73724438-73724457 None:intergenic 30.0%
GATGACAATGAATAGAAGAA+AGG + chr3_2:73724450-73724469 None:intergenic 30.0%
TCGGAATTATTCACAATACT+TGG - chr3_2:73724509-73724528 Msa0423750:intron 30.0%
GAATTATTCACAATACTTGG+AGG - chr3_2:73724512-73724531 Msa0423750:intron 30.0%
AAGAATCATTAGCAAACTAC+AGG + chr3_2:73724629-73724648 None:intergenic 30.0%
TGTTATAGAAATGGAGTAAG+TGG + chr3_2:73724733-73724752 None:intergenic 30.0%
TCCTACTTTAACAAATACAG+AGG - chr3_2:73724991-73725010 Msa0423750:CDS 30.0%
! TCCTCTGTATTTGTTAAAGT+AGG + chr3_2:73724995-73725014 None:intergenic 30.0%
TATTACTTGAATAGAGATCC+TGG + chr3_2:73725136-73725155 None:intergenic 30.0%
TCCCGTATTAATGAACAAAT+AGG - chr3_2:73725590-73725609 Msa0423750:intron 30.0%
! CTTATTAAAAGCACAACAAC+AGG - chr3_2:73726288-73726307 Msa0423750:intron 30.0%
TTGTAAAACTATTGCGACTA+GGG + chr3_2:73726567-73726586 None:intergenic 30.0%
!! ACGTTCTAGTTTCGTTTCTA+CGG + chr3_2:73723637-73723656 None:intergenic 35.0%
CATCTTGTGAATCTTGAGTT+AGG - chr3_2:73723696-73723715 Msa0423750:exon 35.0%
!!! CATTGGTTTTGTAATTCCCT+TGG + chr3_2:73723769-73723788 None:intergenic 35.0%
CAAGGGAATTACAAAACCAA+TGG - chr3_2:73723767-73723786 Msa0423750:CDS 35.0%
!! TTTACAGTCAAGTTGAGAAC+TGG + chr3_2:73724160-73724179 None:intergenic 35.0%
ACTAGAGATTCCAAGCTATT+GGG - chr3_2:73724239-73724258 Msa0423750:intron 35.0%
TTCTATAGAACCCAATAGCT+TGG + chr3_2:73724252-73724271 None:intergenic 35.0%
TCACTTCATAGTTCATAGGT+TGG - chr3_2:73724945-73724964 Msa0423750:intron 35.0%
CTGTCACATATATATCTTCC+AGG - chr3_2:73725115-73725134 Msa0423750:intron 35.0%
!!! ACATTTTGGTTGCAGTTCAT+TGG - chr3_2:73725192-73725211 Msa0423750:intron 35.0%
! GCAGTTCATTGGAAATTTTC+AGG - chr3_2:73725203-73725222 Msa0423750:intron 35.0%
AGTCTGTCATCAACATTCAT+CGG + chr3_2:73725276-73725295 None:intergenic 35.0%
CTTGAGAATCACATGAAACA+CGG - chr3_2:73725384-73725403 Msa0423750:intron 35.0%
TTGAGAATCACATGAAACAC+GGG - chr3_2:73725385-73725404 Msa0423750:intron 35.0%
ATGACTGCAAAAAGAAGACA+CGG + chr3_2:73725480-73725499 None:intergenic 35.0%
CAAATAGGAAGTAATTCACG+AGG - chr3_2:73725605-73725624 Msa0423750:intron 35.0%
ATTGGATCATTTAGACCAGA+GGG + chr3_2:73725712-73725731 None:intergenic 35.0%
! AAGGTGATTTAAAATCAGCC+AGG + chr3_2:73725780-73725799 None:intergenic 35.0%
! CCATTTCTTTTACAAGCCAA+CGG + chr3_2:73725925-73725944 None:intergenic 35.0%
!! TTGGCTTGTAAAAGAAATGG+TGG - chr3_2:73725925-73725944 Msa0423750:intron 35.0%
CATGAGCTTATGAAGGTAAA+GGG + chr3_2:73726042-73726061 None:intergenic 35.0%
ACATGAGCTTATGAAGGTAA+AGG + chr3_2:73726043-73726062 None:intergenic 35.0%
TACCTTCATAAGCTCATGTA+TGG - chr3_2:73726044-73726063 Msa0423750:intron 35.0%
TACCATACATGAGCTTATGA+AGG + chr3_2:73726049-73726068 None:intergenic 35.0%
! ACTCTACTAGTTGCTTTACT+TGG + chr3_2:73726229-73726248 None:intergenic 35.0%
! TTAAAAGCACAACAACAGGA+TGG - chr3_2:73726292-73726311 Msa0423750:intron 35.0%
GTTGTAAAACTATTGCGACT+AGG + chr3_2:73726568-73726587 None:intergenic 35.0%
TTAAATACCGAGATTGCCCT+TGG - chr3_2:73723604-73723623 Msa0423750:three_prime_UTR 40.0%
TAAATACCGAGATTGCCCTT+GGG - chr3_2:73723605-73723624 Msa0423750:three_prime_UTR 40.0%
AACGAAACTAGAACGTGTGA+AGG - chr3_2:73723641-73723660 Msa0423750:three_prime_UTR 40.0%
TGAGAAAATGCGAGATTCCA+AGG - chr3_2:73723749-73723768 Msa0423750:CDS 40.0%
GAGAAAATGCGAGATTCCAA+GGG - chr3_2:73723750-73723769 Msa0423750:CDS 40.0%
TTGAGAACTTCAGATCGATG+TGG - chr3_2:73723907-73723926 Msa0423750:intron 40.0%
GCTTGCAAAATGAAACCCAA+TGG + chr3_2:73723955-73723974 None:intergenic 40.0%
CACTAGAGATTCCAAGCTAT+TGG - chr3_2:73724238-73724257 Msa0423750:intron 40.0%
TGGCTTCTCATAGCAAAGAA+TGG + chr3_2:73724397-73724416 None:intergenic 40.0%
! TTCTTTGCTATGAGAAGCCA+TGG - chr3_2:73724397-73724416 Msa0423750:intron 40.0%
GGTACATTTCTTGAAGTGAG+AGG + chr3_2:73724472-73724491 None:intergenic 40.0%
TCACTTCAAGAAATGTACCG+TGG - chr3_2:73724473-73724492 Msa0423750:intron 40.0%
CACTTCAAGAAATGTACCGT+GGG - chr3_2:73724474-73724493 Msa0423750:intron 40.0%
! CAGTTAGGAGCACAAGAAAT+AGG + chr3_2:73724553-73724572 None:intergenic 40.0%
GATTGTGAGAACTCACAGTT+AGG + chr3_2:73724568-73724587 None:intergenic 40.0%
ACCATGTAGTGATGCATACT+CGG + chr3_2:73725545-73725564 None:intergenic 40.0%
TCATTAATACGGGAGAGAGA+GGG + chr3_2:73725584-73725603 None:intergenic 40.0%
TTCATTAATACGGGAGAGAG+AGG + chr3_2:73725585-73725604 None:intergenic 40.0%
! AGAAAAGGGAGAAAGTGTGA+CGG - chr3_2:73725657-73725676 Msa0423750:CDS 40.0%
TTGGATCATTTAGACCAGAG+GGG + chr3_2:73725711-73725730 None:intergenic 40.0%
CATTGGATCATTTAGACCAG+AGG + chr3_2:73725713-73725732 None:intergenic 40.0%
AAATCAGCCAGGTTTAGAGA+AGG + chr3_2:73725769-73725788 None:intergenic 40.0%
!! TGTGTTGATTACATGACCGT+TGG - chr3_2:73725906-73725925 Msa0423750:intron 40.0%
!! CCGTTGGCTTGTAAAAGAAA+TGG - chr3_2:73725922-73725941 Msa0423750:intron 40.0%
TGAATGCAGTTTCCTGTTCT+CGG - chr3_2:73726410-73726429 Msa0423750:intron 40.0%
TATGAGGTTAACAAGCTCTC+TGG - chr3_2:73726444-73726463 Msa0423750:intron 40.0%
TCCAGAACCAAAAAGCAAAG+TGG - chr3_2:73726489-73726508 Msa0423750:intron 40.0%
CCAGAACCAAAAAGCAAAGT+GGG - chr3_2:73726490-73726509 Msa0423750:intron 40.0%
TTTCTACGGCGAATACCCAA+GGG + chr3_2:73723623-73723642 None:intergenic 45.0%
! AACTGGCTAGTTGACGACAT+GGG + chr3_2:73724143-73724162 None:intergenic 45.0%
! TTTGCTATGAGAAGCCATGG+CGG - chr3_2:73724400-73724419 Msa0423750:intron 45.0%
TGTTCGTGTATGCAGGGATA+CGG - chr3_2:73724968-73724987 Msa0423750:CDS 45.0%
!! GGAAATTTTCAGGAGACAGC+CGG - chr3_2:73725213-73725232 Msa0423750:intron 45.0%
ATCACATGAAACACGGGATG+AGG - chr3_2:73725391-73725410 Msa0423750:intron 45.0%
ATGTAGTGATGCATACTCGG+TGG + chr3_2:73725542-73725561 None:intergenic 45.0%
ACCGAGTATGCATCACTACA+TGG - chr3_2:73725541-73725560 Msa0423750:intron 45.0%
ATTTAGACCAGAGGGGTGAT+TGG + chr3_2:73725704-73725723 None:intergenic 45.0%
AGGTTTAGAGAAGGCTTGAC+TGG + chr3_2:73725760-73725779 None:intergenic 45.0%
AGTCAAGCCTTCTCTAAACC+TGG - chr3_2:73725759-73725778 Msa0423750:CDS 45.0%
!! GTAATGGGTTGTGCATCCTT+TGG - chr3_2:73725979-73725998 Msa0423750:intron 45.0%
! GGAGTCACTTGTTGAAACAG+CGG + chr3_2:73726472-73726491 None:intergenic 45.0%
!!! CCCACTTTGCTTTTTGGTTC+TGG + chr3_2:73726493-73726512 None:intergenic 45.0%
!! AGCTCTCCCACTTTGCTTTT+TGG + chr3_2:73726499-73726518 None:intergenic 45.0%
CGAATACCCAAGGGCAATCT+CGG + chr3_2:73723614-73723633 None:intergenic 50.0%
GTTTCTACGGCGAATACCCA+AGG + chr3_2:73723624-73723643 None:intergenic 50.0%
! ACTGGCTAGTTGACGACATG+GGG + chr3_2:73724142-73724161 None:intergenic 50.0%
! GAACTGGCTAGTTGACGACA+TGG + chr3_2:73724144-73724163 None:intergenic 50.0%
TTGCTATGAGAAGCCATGGC+GGG - chr3_2:73724401-73724420 Msa0423750:intron 50.0%
!! AGGTTGGTGTTCGTGTATGC+AGG - chr3_2:73724961-73724980 Msa0423750:CDS 50.0%
! GGTTGGTGTTCGTGTATGCA+GGG - chr3_2:73724962-73724981 Msa0423750:CDS 50.0%
TCAAATGCCAATCACCCCTC+TGG - chr3_2:73725694-73725713 Msa0423750:CDS 50.0%
TGCTATGAGAAGCCATGGCG+GGG - chr3_2:73724402-73724421 Msa0423750:intron 55.0%
CCGACGATGCAAGTTTCCCA+CGG + chr3_2:73724493-73724512 None:intergenic 55.0%
CCGTGGGAAACTTGCATCGT+CGG - chr3_2:73724490-73724509 Msa0423750:intron 55.0%
GAGACAGCCGGTGCAAAATC+TGG - chr3_2:73725225-73725244 Msa0423750:intron 55.0%
AGCCGGTGCAAAATCTGGCT+GGG - chr3_2:73725230-73725249 Msa0423750:intron 55.0%
! ACCCCAGCCAGATTTTGCAC+CGG + chr3_2:73725235-73725254 None:intergenic 55.0%
GGAGAGAGAGGGTAAGTGCA+GGG + chr3_2:73725573-73725592 None:intergenic 55.0%
AGAGCAACACAGCCGAGAAC+AGG + chr3_2:73726425-73726444 None:intergenic 55.0%
! CTCGGCTGTGTTGCTCTATG+AGG - chr3_2:73726428-73726447 Msa0423750:intron 55.0%
TTGACGACATGGGGCCCGTT+TGG + chr3_2:73724133-73724152 None:intergenic 60.0%
CAGCCGGTGCAAAATCTGGC+TGG - chr3_2:73725229-73725248 Msa0423750:intron 60.0%
GCCGGTGCAAAATCTGGCTG+GGG - chr3_2:73725231-73725250 Msa0423750:intron 60.0%
GCAAAATCTGGCTGGGGTGC+TGG - chr3_2:73725237-73725256 Msa0423750:intron 60.0%
GGGAGAGAGAGGGTAAGTGC+AGG + chr3_2:73725574-73725593 None:intergenic 60.0%
! TGAGAAGCCATGGCGGGGTC+TGG - chr3_2:73724407-73724426 Msa0423750:intron 65.0%
! GAGAAGCCATGGCGGGGTCT+GGG - chr3_2:73724408-73724427 Msa0423750:intron 65.0%
GGAACTCCCAGACCCCGCCA+TGG + chr3_2:73724417-73724436 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 73723487 73726731 73723487 ID=Msa0423750;Name=Msa0423750
chr3_2 mRNA 73723487 73726731 73723487 ID=Msa0423750-mRNA-1;Parent=Msa0423750;Name=Msa0423750-mRNA-1;_AED=0.00;_eAED=0.00;_QI=234|1|1|1|0.75|0.6|5|210|125
chr3_2 exon 73723487 73723799 73723487 ID=Msa0423750-mRNA-1:exon:18499;Parent=Msa0423750-mRNA-1
chr3_2 exon 73724656 73724722 73724656 ID=Msa0423750-mRNA-1:exon:18498;Parent=Msa0423750-mRNA-1
chr3_2 exon 73724960 73725011 73724960 ID=Msa0423750-mRNA-1:exon:18497;Parent=Msa0423750-mRNA-1
chr3_2 exon 73725647 73725805 73725647 ID=Msa0423750-mRNA-1:exon:18496;Parent=Msa0423750-mRNA-1
chr3_2 exon 73726501 73726731 73726501 ID=Msa0423750-mRNA-1:exon:18495;Parent=Msa0423750-mRNA-1
chr3_2 five_prime_UTR 73726501 73726731 73726501 ID=Msa0423750-mRNA-1:five_prime_utr;Parent=Msa0423750-mRNA-1
chr3_2 five_prime_UTR 73725803 73725805 73725803 ID=Msa0423750-mRNA-1:five_prime_utr;Parent=Msa0423750-mRNA-1
chr3_2 CDS 73725647 73725802 73725647 ID=Msa0423750-mRNA-1:cds;Parent=Msa0423750-mRNA-1
chr3_2 CDS 73724960 73725011 73724960 ID=Msa0423750-mRNA-1:cds;Parent=Msa0423750-mRNA-1
chr3_2 CDS 73724656 73724722 73724656 ID=Msa0423750-mRNA-1:cds;Parent=Msa0423750-mRNA-1
chr3_2 CDS 73723697 73723799 73723697 ID=Msa0423750-mRNA-1:cds;Parent=Msa0423750-mRNA-1
chr3_2 three_prime_UTR 73723487 73723696 73723487 ID=Msa0423750-mRNA-1:three_prime_utr;Parent=Msa0423750-mRNA-1
Gene Sequence

>Msa0423750

ATGGCGGGGTCTGGGAGTTCCATGATGTATTCCTTTCTTCTATTCATTGTCATCCTCTCACTTCAAGAAATGTACCGTGGGAAACTTGCATCGTCGGAATTATTCACAATACTTGGAGGGTTCACTAGCTCTCTCCTATTTCTTGTGCTCCTAACTTTCATTGGAAATTTTCAGGAGACAGCCGGTGCAAAATCTGGCTGGGGTGCTGTCATAATAGCAGAAGTAGTTGCATTGATTGCTGCAAGCACTGTCCACCGAGTATGCATCACTACATGTTTCCTGTTCTCGGCTGTGTTGCTCTATGAGGTTAACAAGCTCTCTGGATCCGCTGTTTCAACAAGTGACTCCAGAACCAAAAAGCAAAGTGGGAGAGCTTAG

Protein sequence

>Msa0423750

MAGSGSSMMYSFLLFIVILSLQEMYRGKLASSELFTILGGFTSSLLFLVLLTFIGNFQETAGAKSGWGAVIIAEVVALIAASTVHRVCITTCFLFSAVLLYEVNKLSGSAVSTSDSRTKKQSGRA*