Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739230 | XP_003616881.1 | 87.654 | 243 | 7 | 1 | 1 | 243 | 1 | 220 | 2.02e-153 | 435 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739230 | sp|Q9ZVN4|DSP1_ARATH | 60.776 | 232 | 66 | 3 | 9 | 239 | 4 | 211 | 7.34e-96 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739230 | G7KH96 | 87.654 | 243 | 7 | 1 | 1 | 243 | 1 | 220 | 9.63e-154 | 435 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0739230 | Msa0781920 | 0.880450 | 5.435191e-70 | -8.615850e-47 |
| Msa0739230 | Msa0819650 | 0.831386 | 1.718790e-55 | -8.615850e-47 |
| Msa0739230 | Msa0859870 | 0.940982 | 9.169606e-101 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739230 | MtrunA17_Chr5g0438971 | 87.654 | 243 | 7 | 1 | 1 | 243 | 1 | 220 | 1.85e-157 | 435 |
| Msa0739230 | MtrunA17_Chr4g0075511 | 61.574 | 216 | 57 | 2 | 27 | 239 | 1 | 193 | 1.83e-93 | 273 |
| Msa0739230 | MtrunA17_Chr7g0249271 | 53.723 | 188 | 64 | 1 | 46 | 233 | 5 | 169 | 6.66e-70 | 213 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739230 | AT1G05000.1 | 60.776 | 232 | 66 | 3 | 9 | 239 | 4 | 211 | 7.46e-97 | 282 |
| Msa0739230 | AT1G05000.2 | 59.016 | 244 | 83 | 4 | 9 | 239 | 4 | 243 | 9.50e-97 | 283 |
| Msa0739230 | AT4G03960.1 | 67.368 | 190 | 39 | 1 | 54 | 243 | 25 | 191 | 8.74e-92 | 269 |
| Msa0739230 | AT2G32960.1 | 54.959 | 242 | 96 | 3 | 14 | 243 | 17 | 257 | 1.52e-90 | 268 |
| Msa0739230 | AT3G02800.1 | 56.216 | 185 | 58 | 1 | 56 | 240 | 13 | 174 | 3.86e-72 | 219 |
| Msa0739230 | AT5G16480.1 | 55.914 | 186 | 58 | 2 | 48 | 233 | 5 | 166 | 9.96e-68 | 208 |
| Msa0739230 | AT1G05000.3 | 56.780 | 118 | 49 | 2 | 9 | 125 | 4 | 120 | 2.85e-39 | 134 |
| Msa0739230 | AT5G16480.2 | 67.105 | 76 | 24 | 1 | 48 | 123 | 5 | 79 | 5.28e-28 | 103 |
Find 73 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTATTCTGACTTGATAAA+TGG | 0.204669 | 5_1:+57397885 | Msa0739230:three_prime_UTR |
| TCCTACACATCTGTGTTTCT+TGG | 0.204782 | 5_1:-57394556 | None:intergenic |
| GCTTCCCGGATGGTGTCTTC+TGG | 0.230489 | 5_1:-57396855 | None:intergenic |
| TCCAAGTTAGCTTCTGGATA+TGG | 0.250782 | 5_1:-57395077 | None:intergenic |
| CGCTTACAGTGAATTATAAC+TGG | 0.264371 | 5_1:-57397000 | None:intergenic |
| ATTGTTAGTTGATTGATATT+TGG | 0.296635 | 5_1:-57394272 | None:intergenic |
| AAAGAGAAGTTGGAAGGTTC+AGG | 0.317727 | 5_1:-57394831 | None:intergenic |
| ACACTCATTGCTCATGAATA+AGG | 0.322193 | 5_1:-57397746 | None:intergenic |
| TTGTTGCTGCAATGCTTTGA+AGG | 0.336187 | 5_1:-57397589 | None:intergenic |
| GAAGCACTAAAAGTTCTTCT+TGG | 0.348753 | 5_1:+57396873 | Msa0739230:CDS |
| GAAAATAGAGAAAGGGAAAG+GGG | 0.355365 | 5_1:-57394334 | None:intergenic |
| AGAAACTCCAAGTTAGCTTC+TGG | 0.360302 | 5_1:-57395083 | None:intergenic |
| TTCAAATATGAAAATGGTAT+AGG | 0.362929 | 5_1:-57397448 | None:intergenic |
| TTAGCTTCTGGATATGGTTC+AGG | 0.367111 | 5_1:-57395071 | None:intergenic |
| TTCTCTTTCCTTCAAACCCT+TGG | 0.368110 | 5_1:+57394846 | Msa0739230:CDS |
| TTGGAGTTTCTCAAGTCAAA+TGG | 0.388214 | 5_1:+57395095 | Msa0739230:CDS |
| GGTTTGAAGGAAAGAGAAGT+TGG | 0.397482 | 5_1:-57394841 | None:intergenic |
| AGAAAATAGAGAAAGGGAAA+GGG | 0.403951 | 5_1:-57394335 | None:intergenic |
| CTTTGGAATTGAGGGTCATA+AGG | 0.410508 | 5_1:+57395133 | Msa0739230:CDS |
| CAACGGTTGTAGTTTGTTTG+AGG | 0.414210 | 5_1:-57394610 | None:intergenic |
| ACCATATCCAGAAGCTAACT+TGG | 0.415247 | 5_1:+57395076 | Msa0739230:CDS |
| CTTCCCGGATGGTGTCTTCT+GGG | 0.417463 | 5_1:-57396854 | None:intergenic |
| CTTTATCACTTTGGAATTGA+GGG | 0.425995 | 5_1:+57395125 | Msa0739230:CDS |
| GGGATGAAGCTTTATCACTT+TGG | 0.426295 | 5_1:+57395116 | Msa0739230:CDS |
| TGATATTTGGAGGGAGAGAG+TGG | 0.426980 | 5_1:-57394259 | None:intergenic |
| CAAAGAGAAAATAAAATAGT+TGG | 0.429666 | 5_1:-57397700 | None:intergenic |
| TTGAATAATAAAATAGGAAA+AGG | 0.434491 | 5_1:+57397557 | Msa0739230:three_prime_UTR |
| GCTTTATCACTTTGGAATTG+AGG | 0.438901 | 5_1:+57395124 | Msa0739230:CDS |
| AAGAGAAAGAAAATAGAGAA+AGG | 0.448432 | 5_1:-57394342 | None:intergenic |
| AGAAAGAGAGAGAGTTTGAA+TGG | 0.449916 | 5_1:-57394229 | None:intergenic |
| AGAGAAAGAAAATAGAGAAA+GGG | 0.450418 | 5_1:-57394341 | None:intergenic |
| TGTTGTTTACAGCACCGAAC+AGG | 0.463983 | 5_1:+57397280 | Msa0739230:intron |
| CACTTTCACAAGCTAAAGAA+AGG | 0.465157 | 5_1:-57397516 | None:intergenic |
| GTGAGAGGTGAAAGTTTGAA+AGG | 0.465555 | 5_1:-57394195 | None:intergenic |
| GAAGTGTGTGTATGAATGTA+TGG | 0.473238 | 5_1:-57394414 | None:intergenic |
| AAGAAAATAGAGAAAGGGAA+AGG | 0.474648 | 5_1:-57394336 | None:intergenic |
| ATCCGACTAAACAGCCTGTT+CGG | 0.476274 | 5_1:-57397294 | None:intergenic |
| TGGAGTTTCTCAAGTCAAAT+GGG | 0.481778 | 5_1:+57395096 | Msa0739230:CDS |
| GTTAGTTGATTGATATTTGG+AGG | 0.483903 | 5_1:-57394269 | None:intergenic |
| AAAATAGAGAAAGGGAAAGG+GGG | 0.490562 | 5_1:-57394333 | None:intergenic |
| ACATCCCAGAAGACACCATC+CGG | 0.490587 | 5_1:+57396850 | Msa0739230:CDS |
| AGCGAAGACCAAGGGTTTGA+AGG | 0.493469 | 5_1:-57394854 | None:intergenic |
| AAATAGAGAAAGGGAAAGGG+GGG | 0.505444 | 5_1:-57394332 | None:intergenic |
| ACACTCTTTCCTCTCTTCAA+AGG | 0.523615 | 5_1:+57394150 | None:intergenic |
| AGTTATAATTCACTGTAAGC+GGG | 0.526447 | 5_1:+57397002 | Msa0739230:CDS |
| TCTTCTGGGATGTTTACAAA+AGG | 0.529846 | 5_1:-57396840 | None:intergenic |
| TGAAGGAAAGAGAAGTTGGA+AGG | 0.530380 | 5_1:-57394837 | None:intergenic |
| AGCTTGTGAAAGTGAATCCA+AGG | 0.534237 | 5_1:+57397525 | Msa0739230:three_prime_UTR |
| CTTTGATATGCAACAACACG+TGG | 0.538040 | 5_1:+57394496 | Msa0739230:exon |
| GATATTTGGAGGGAGAGAGT+GGG | 0.538600 | 5_1:-57394258 | None:intergenic |
| TTATTCAAAAGGTAGAACCT+TGG | 0.557698 | 5_1:-57397542 | None:intergenic |
| TTAGTTGATTGATATTTGGA+GGG | 0.558371 | 5_1:-57394268 | None:intergenic |
| CACCGAACAGGCTGTTTAGT+CGG | 0.558896 | 5_1:+57397292 | Msa0739230:CDS |
| TCAAAGCATTGCAGCAACAA+AGG | 0.559466 | 5_1:+57397592 | Msa0739230:three_prime_UTR |
| TGTTTGTTTCCTTTGAAGAG+AGG | 0.577243 | 5_1:-57394159 | None:intergenic |
| AATTCACTGTAAGCGGGGAA+AGG | 0.585086 | 5_1:+57397008 | Msa0739230:CDS |
| CAGTTATAATTCACTGTAAG+CGG | 0.590977 | 5_1:+57397001 | Msa0739230:CDS |
| GATGTTTGTGACAAAATAGA+CGG | 0.592212 | 5_1:+57394641 | Msa0739230:CDS |
| AAGCTCGAGTTTCTGATCAG+AGG | 0.594931 | 5_1:+57397386 | Msa0739230:CDS |
| CATGATGGAGCGAAGACCAA+GGG | 0.606131 | 5_1:-57394862 | None:intergenic |
| ACCATAGCAAAATTGAGAGG+TGG | 0.613290 | 5_1:-57394780 | None:intergenic |
| TCAACTAACAATCTCTACAA+AGG | 0.614256 | 5_1:+57394283 | Msa0739230:five_prime_UTR |
| ACCAAGAAACACAGATGTGT+AGG | 0.615442 | 5_1:+57394555 | Msa0739230:CDS |
| ACAAACATCAACTTCATCAA+CGG | 0.625540 | 5_1:-57394627 | None:intergenic |
| TGTAACTTCTGTTAAAATCG+CGG | 0.632489 | 5_1:-57395549 | None:intergenic |
| CATCCCAGAAGACACCATCC+GGG | 0.632592 | 5_1:+57396851 | Msa0739230:CDS |
| ACATGATGGAGCGAAGACCA+AGG | 0.657297 | 5_1:-57394863 | None:intergenic |
| GCTTACAGTGAATTATAACT+GGG | 0.657845 | 5_1:-57396999 | None:intergenic |
| TACAGTGAATTATAACTGGG+TGG | 0.658923 | 5_1:-57396996 | None:intergenic |
| GTTATAATTCACTGTAAGCG+GGG | 0.660929 | 5_1:+57397003 | Msa0739230:CDS |
| TCAACCATAGCAAAATTGAG+AGG | 0.670609 | 5_1:-57394783 | None:intergenic |
| AAGGTTCAGGAAAACCAGAA+CGG | 0.690090 | 5_1:-57394818 | None:intergenic |
| TTTGATATGCAACAACACGT+GGG | 0.736277 | 5_1:+57394497 | Msa0739230:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAACATAGATTAAAAA+AGG | - | chr5_1:57395182-57395201 | None:intergenic | 10.0% |
| !! | AATAAATAAAAAACATTGTT+CGG | + | chr5_1:57395698-57395717 | Msa0739230:intron | 10.0% |
| !! | TTACTAATAAATCATCAATT+GGG | - | chr5_1:57394986-57395005 | None:intergenic | 15.0% |
| !! | TTTACTAATAAATCATCAAT+TGG | - | chr5_1:57394987-57395006 | None:intergenic | 15.0% |
| !!! | ATATTGATTATTTGTTTGAT+GGG | + | chr5_1:57395026-57395045 | Msa0739230:intron | 15.0% |
| !! | AATTATAATCACAATCAATT+TGG | + | chr5_1:57395978-57395997 | Msa0739230:intron | 15.0% |
| !!! | TATTTTTGGATATTGAATTA+TGG | + | chr5_1:57396482-57396501 | Msa0739230:intron | 15.0% |
| !!! | TAGTTATATTTCCTAAATTT+TGG | + | chr5_1:57396586-57396605 | Msa0739230:intron | 15.0% |
| !!! | TCTAATCAATTATTTGTTAT+TGG | + | chr5_1:57397056-57397075 | Msa0739230:intron | 15.0% |
| !! | AAAAAAAAGTTATGCTAAAT+TGG | + | chr5_1:57397488-57397507 | Msa0739230:three_prime_UTR | 15.0% |
| !! | AAAAAAAGTTATGCTAAATT+GGG | + | chr5_1:57397489-57397508 | Msa0739230:three_prime_UTR | 15.0% |
| !!! | TACCTTTTGAATAATAAAAT+AGG | + | chr5_1:57397551-57397570 | Msa0739230:three_prime_UTR | 15.0% |
| !!! | TTCCTATTTTATTATTCAAA+AGG | - | chr5_1:57397556-57397575 | None:intergenic | 15.0% |
| !! | TTGAATAATAAAATAGGAAA+AGG | + | chr5_1:57397557-57397576 | Msa0739230:three_prime_UTR | 15.0% |
| !!! | CTTATCTTATTCTAAAAAAT+GGG | - | chr5_1:57397635-57397654 | None:intergenic | 15.0% |
| !!! | TCTTATCTTATTCTAAAAAA+TGG | - | chr5_1:57397636-57397655 | None:intergenic | 15.0% |
| !!! | ATTTTATTTTCTCTTTGTTT+TGG | + | chr5_1:57397706-57397725 | Msa0739230:three_prime_UTR | 15.0% |
| !! | ATTGTTAGTTGATTGATATT+TGG | - | chr5_1:57394275-57394294 | None:intergenic | 20.0% |
| !!! | GTTTTAAAATGTTACTCTTT+AGG | - | chr5_1:57394477-57394496 | None:intergenic | 20.0% |
| !! | ATATGTGTATATATACATGA+TGG | - | chr5_1:57394880-57394899 | None:intergenic | 20.0% |
| !!! | GATATTGATTATTTGTTTGA+TGG | + | chr5_1:57395025-57395044 | Msa0739230:intron | 20.0% |
| !! | AAACACTACAATTCATATAA+TGG | - | chr5_1:57395412-57395431 | None:intergenic | 20.0% |
| !!! | TATGTTATCATGTCATTTTT+TGG | + | chr5_1:57395772-57395791 | Msa0739230:intron | 20.0% |
| !! | ATTATAAAGTTATCACACTT+TGG | - | chr5_1:57395897-57395916 | None:intergenic | 20.0% |
| !! | AGTGTGATAACTTTATAATA+TGG | + | chr5_1:57395898-57395917 | Msa0739230:intron | 20.0% |
| !!! | GGTTTTTTGTGAATATTTAT+TGG | + | chr5_1:57395999-57396018 | Msa0739230:intron | 20.0% |
| !!! | GTTTTTGACAAATTCATAAT+GGG | - | chr5_1:57396066-57396085 | None:intergenic | 20.0% |
| !! | TTATGCTTATTGAACAAAAT+TGG | - | chr5_1:57396088-57396107 | None:intergenic | 20.0% |
| !!! | TCAACATTTTATATTGAAAC+CGG | + | chr5_1:57396246-57396265 | Msa0739230:intron | 20.0% |
| !! | TTTAGGAAATATAACTAAGT+TGG | - | chr5_1:57396583-57396602 | None:intergenic | 20.0% |
| !!! | TTATATTTCCTAAATTTTGG+AGG | + | chr5_1:57396589-57396608 | Msa0739230:intron | 20.0% |
| !!! | TATATTTCCTAAATTTTGGA+GGG | + | chr5_1:57396590-57396609 | Msa0739230:intron | 20.0% |
| !! | TTTACAAGAAAATACTCTTT+CGG | - | chr5_1:57397238-57397257 | None:intergenic | 20.0% |
| !! | TTCAAATATGAAAATGGTAT+AGG | - | chr5_1:57397451-57397470 | None:intergenic | 20.0% |
| !!! | TACCATTTTCATATTTGAAA+AGG | + | chr5_1:57397452-57397471 | Msa0739230:CDS | 20.0% |
| !!! | TACCTTTTCAAATATGAAAA+TGG | - | chr5_1:57397457-57397476 | None:intergenic | 20.0% |
| !! | CAAAGAGAAAATAAAATAGT+TGG | - | chr5_1:57397703-57397722 | None:intergenic | 20.0% |
| ! | TTAGTTGATTGATATTTGGA+GGG | - | chr5_1:57394271-57394290 | None:intergenic | 25.0% |
| ! | AGAGAAAGAAAATAGAGAAA+GGG | - | chr5_1:57394344-57394363 | None:intergenic | 25.0% |
| ! | AAGAGAAAGAAAATAGAGAA+AGG | - | chr5_1:57394345-57394364 | None:intergenic | 25.0% |
| !!! | AATTTTGCTATGGTTGATAA+TGG | + | chr5_1:57394789-57394808 | Msa0739230:CDS | 25.0% |
| ! | ATGAATGCAAAAAGTGATTA+AGG | + | chr5_1:57395238-57395257 | Msa0739230:intron | 25.0% |
| ! | TATAATTGAACAAAGATCAC+TGG | + | chr5_1:57395272-57395291 | Msa0739230:intron | 25.0% |
| !! | TGCAATTATTTTCTTCAAGT+TGG | + | chr5_1:57395340-57395359 | Msa0739230:intron | 25.0% |
| !! | TAATTTGTGACCTATTGAAA+TGG | + | chr5_1:57395384-57395403 | Msa0739230:intron | 25.0% |
| ! | AATTTGTGACCTATTGAAAT+GGG | + | chr5_1:57395385-57395404 | Msa0739230:intron | 25.0% |
| !!! | GATTTTAGCAAAATCAATCA+CGG | - | chr5_1:57395605-57395624 | None:intergenic | 25.0% |
| ! | TACATAACAAAGTACATGTT+TGG | - | chr5_1:57395637-57395656 | None:intergenic | 25.0% |
| !! | ATTATAATTTGAGATAACCC+TGG | - | chr5_1:57395967-57395986 | None:intergenic | 25.0% |
| !! | TTTGTGAATATTTATTGGCT+AGG | + | chr5_1:57396004-57396023 | Msa0739230:intron | 25.0% |
| !! | GGTTTTTGACAAATTCATAA+TGG | - | chr5_1:57396067-57396086 | None:intergenic | 25.0% |
| !! | GACTATTGTACTAGTTTATT+TGG | + | chr5_1:57396342-57396361 | Msa0739230:intron | 25.0% |
| !! | TGTACTAGTTTATTTGGAAA+TGG | + | chr5_1:57396348-57396367 | Msa0739230:intron | 25.0% |
| ! | AAGTTGGATATCATAATCAA+GGG | - | chr5_1:57396567-57396586 | None:intergenic | 25.0% |
| !! | TAAGTTGGATATCATAATCA+AGG | - | chr5_1:57396568-57396587 | None:intergenic | 25.0% |
| ! | TATGCAATTTATCAACTGTT+CGG | - | chr5_1:57396683-57396702 | None:intergenic | 25.0% |
| !! | TCTGATCTTATTTGAAATTG+TGG | + | chr5_1:57396808-57396827 | Msa0739230:intron | 25.0% |
| !! | TTATTTGAAATTGTGGATTC+AGG | + | chr5_1:57396815-57396834 | Msa0739230:intron | 25.0% |
| ! | ATTATTATTTAGATCGCCAA+AGG | - | chr5_1:57396962-57396981 | None:intergenic | 25.0% |
| !!! | TAGTCTTGATTTTTTTCTTG+AGG | + | chr5_1:57397773-57397792 | Msa0739230:three_prime_UTR | 25.0% |
| !! | CATTATTCTGACTTGATAAA+TGG | + | chr5_1:57397885-57397904 | Msa0739230:three_prime_UTR | 25.0% |
| GTTTGAAAGGAGAAGAAAAA+AGG | - | chr5_1:57394185-57394204 | None:intergenic | 30.0% | |
| GTTAGTTGATTGATATTTGG+AGG | - | chr5_1:57394272-57394291 | None:intergenic | 30.0% | |
| TCAACTAACAATCTCTACAA+AGG | + | chr5_1:57394283-57394302 | Msa0739230:five_prime_UTR | 30.0% | |
| AGAAAATAGAGAAAGGGAAA+GGG | - | chr5_1:57394338-57394357 | None:intergenic | 30.0% | |
| AAGAAAATAGAGAAAGGGAA+AGG | - | chr5_1:57394339-57394358 | None:intergenic | 30.0% | |
| ! | TGGTTCTTTTTCTTATGTTG+AGG | - | chr5_1:57394539-57394558 | None:intergenic | 30.0% |
| ACAAACATCAACTTCATCAA+CGG | - | chr5_1:57394630-57394649 | None:intergenic | 30.0% | |
| GATGTTTGTGACAAAATAGA+CGG | + | chr5_1:57394641-57394660 | Msa0739230:CDS | 30.0% | |
| !!! | GTGTTTTTGAGTTTTGTGAT+TGG | + | chr5_1:57394951-57394970 | Msa0739230:intron | 30.0% |
| !! | CTTTATCACTTTGGAATTGA+GGG | + | chr5_1:57395125-57395144 | Msa0739230:CDS | 30.0% |
| !!! | ATTTTCTTCAAGTTGGTGTA+TGG | + | chr5_1:57395347-57395366 | Msa0739230:intron | 30.0% |
| TATAATGGTCCCATTTCAAT+AGG | - | chr5_1:57395397-57395416 | None:intergenic | 30.0% | |
| TTTAAGCCAATGAATTGCTA+TGG | + | chr5_1:57395429-57395448 | Msa0739230:intron | 30.0% | |
| TGTAACTTCTGTTAAAATCG+CGG | - | chr5_1:57395552-57395571 | None:intergenic | 30.0% | |
| AAAGAAAACAGTATCCAATC+AGG | - | chr5_1:57395810-57395829 | None:intergenic | 30.0% | |
| AATATGGAATCACTGTTTGA+TGG | + | chr5_1:57395914-57395933 | Msa0739230:intron | 30.0% | |
| ! | TATTCTTGCTGTCTGTATAA+TGG | + | chr5_1:57396039-57396058 | Msa0739230:intron | 30.0% |
| ! | ATTCTTGCTGTCTGTATAAT+GGG | + | chr5_1:57396040-57396059 | Msa0739230:intron | 30.0% |
| ! | TTTTCCATCATGACAAAGAA+AGG | + | chr5_1:57396109-57396128 | Msa0739230:intron | 30.0% |
| TTTCCATCATGACAAAGAAA+GGG | + | chr5_1:57396110-57396129 | Msa0739230:intron | 30.0% | |
| GCAAACTATTAAGGAAAAAC+CGG | + | chr5_1:57396200-57396219 | Msa0739230:intron | 30.0% | |
| ! | AGTCTCTAACTTTTAACGAT+CGG | - | chr5_1:57396326-57396345 | None:intergenic | 30.0% |
| !! | CTATTCGATGAGCTTATTTT+TGG | + | chr5_1:57396468-57396487 | Msa0739230:intron | 30.0% |
| !! | TTGATTTTTCTTGTGTTGCT+TGG | - | chr5_1:57396528-57396547 | None:intergenic | 30.0% |
| GTTAAACAGAAATCAGAGAT+GGG | - | chr5_1:57396632-57396651 | None:intergenic | 30.0% | |
| AGTTAAACAGAAATCAGAGA+TGG | - | chr5_1:57396633-57396652 | None:intergenic | 30.0% | |
| ATTATGCACGTAATAACCTT+TGG | + | chr5_1:57396943-57396962 | Msa0739230:intron | 30.0% | |
| GCTTACAGTGAATTATAACT+GGG | - | chr5_1:57397002-57397021 | None:intergenic | 30.0% | |
| CAGTTATAATTCACTGTAAG+CGG | + | chr5_1:57397001-57397020 | Msa0739230:CDS | 30.0% | |
| AGTTATAATTCACTGTAAGC+GGG | + | chr5_1:57397002-57397021 | Msa0739230:CDS | 30.0% | |
| ATAGTAAAAACCATCTTGTC+CGG | + | chr5_1:57397084-57397103 | Msa0739230:intron | 30.0% | |
| AGACATTGTCGACAAAAATA+TGG | - | chr5_1:57397116-57397135 | None:intergenic | 30.0% | |
| CTAATAGGGTTCTATTAGAT+AGG | + | chr5_1:57397148-57397167 | Msa0739230:intron | 30.0% | |
| GCTATAGAAAACTGCAAAAA+TGG | + | chr5_1:57397317-57397336 | Msa0739230:CDS | 30.0% | |
| TTATTCAAAAGGTAGAACCT+TGG | - | chr5_1:57397545-57397564 | None:intergenic | 30.0% | |
| ! | TGTTTGTTTCCTTTGAAGAG+AGG | - | chr5_1:57394162-57394181 | None:intergenic | 35.0% |
| !!! | ATGGTCTTTTGTTTTGTGAG+AGG | - | chr5_1:57394213-57394232 | None:intergenic | 35.0% |
| AGAAAGAGAGAGAGTTTGAA+TGG | - | chr5_1:57394232-57394251 | None:intergenic | 35.0% | |
| AAAATAGAGAAAGGGAAAGG+GGG | - | chr5_1:57394336-57394355 | None:intergenic | 35.0% | |
| GAAAATAGAGAAAGGGAAAG+GGG | - | chr5_1:57394337-57394356 | None:intergenic | 35.0% | |
| GAAGTGTGTGTATGAATGTA+TGG | - | chr5_1:57394417-57394436 | None:intergenic | 35.0% | |
| TTTGATATGCAACAACACGT+GGG | + | chr5_1:57394497-57394516 | Msa0739230:exon | 35.0% | |
| TCAACCATAGCAAAATTGAG+AGG | - | chr5_1:57394786-57394805 | None:intergenic | 35.0% | |
| TTGGAGTTTCTCAAGTCAAA+TGG | + | chr5_1:57395095-57395114 | Msa0739230:CDS | 35.0% | |
| TGGAGTTTCTCAAGTCAAAT+GGG | + | chr5_1:57395096-57395115 | Msa0739230:CDS | 35.0% | |
| !! | GCTTTATCACTTTGGAATTG+AGG | + | chr5_1:57395124-57395143 | Msa0739230:CDS | 35.0% |
| GATAAGAGAGACATGTCAAT+TGG | - | chr5_1:57395307-57395326 | None:intergenic | 35.0% | |
| ! | GTCTCTCTTATCATCTTTTG+TGG | + | chr5_1:57395315-57395334 | Msa0739230:intron | 35.0% |
| AACCTACCATAGCAATTCAT+TGG | - | chr5_1:57395438-57395457 | None:intergenic | 35.0% | |
| TTGCTATGGTAGGTTATATG+AGG | + | chr5_1:57395443-57395462 | Msa0739230:intron | 35.0% | |
| TGCTATGGTAGGTTATATGA+GGG | + | chr5_1:57395444-57395463 | Msa0739230:intron | 35.0% | |
| GTAGGTTATATGAGGGAAAA+GGG | + | chr5_1:57395451-57395470 | Msa0739230:intron | 35.0% | |
| TAGGTTATATGAGGGAAAAG+GGG | + | chr5_1:57395452-57395471 | Msa0739230:intron | 35.0% | |
| GGTCTATTATTGATCCTGAT+TGG | + | chr5_1:57395793-57395812 | Msa0739230:intron | 35.0% | |
| TTCCATCATGACAAAGAAAG+GGG | + | chr5_1:57396111-57396130 | Msa0739230:intron | 35.0% | |
| TCTAAATCATGATCAACCCT+AGG | + | chr5_1:57396165-57396184 | Msa0739230:intron | 35.0% | |
| ACCAAGAAGGCAAACTATTA+AGG | + | chr5_1:57396191-57396210 | Msa0739230:intron | 35.0% | |
| ! | TCCTTAATAGTTTGCCTTCT+TGG | - | chr5_1:57396195-57396214 | None:intergenic | 35.0% |
| ACGCTTCAAATCTAGTAAAC+CGG | - | chr5_1:57396268-57396287 | None:intergenic | 35.0% | |
| ! | AAATGGAACCCATGTGTTTT+TGG | + | chr5_1:57396365-57396384 | Msa0739230:intron | 35.0% |
| CTAATCCACCAAAAACACAT+GGG | - | chr5_1:57396376-57396395 | None:intergenic | 35.0% | |
| !!! | CATGTGTTTTTGGTGGATTA+GGG | + | chr5_1:57396375-57396394 | Msa0739230:intron | 35.0% |
| CTGAAAACCCTCCAAAATTT+AGG | - | chr5_1:57396600-57396619 | None:intergenic | 35.0% | |
| !! | TCTTCTGGGATGTTTACAAA+AGG | - | chr5_1:57396843-57396862 | None:intergenic | 35.0% |
| ! | GAAGCACTAAAAGTTCTTCT+TGG | + | chr5_1:57396873-57396892 | Msa0739230:CDS | 35.0% |
| TACAGTGAATTATAACTGGG+TGG | - | chr5_1:57396999-57397018 | None:intergenic | 35.0% | |
| CGCTTACAGTGAATTATAAC+TGG | - | chr5_1:57397003-57397022 | None:intergenic | 35.0% | |
| GTTATAATTCACTGTAAGCG+GGG | + | chr5_1:57397003-57397022 | Msa0739230:CDS | 35.0% | |
| TAGTAAAAACCATCTTGTCC+GGG | + | chr5_1:57397085-57397104 | Msa0739230:intron | 35.0% | |
| ! | GACAAAAATATGGCTTTTCC+CGG | - | chr5_1:57397106-57397125 | None:intergenic | 35.0% |
| ! | TCTCTGTGATTTGTGCTAAT+AGG | + | chr5_1:57397133-57397152 | Msa0739230:intron | 35.0% |
| ! | CTCTGTGATTTGTGCTAATA+GGG | + | chr5_1:57397134-57397153 | Msa0739230:intron | 35.0% |
| CACTTTCACAAGCTAAAGAA+AGG | - | chr5_1:57397519-57397538 | None:intergenic | 35.0% | |
| ACACTCATTGCTCATGAATA+AGG | - | chr5_1:57397749-57397768 | None:intergenic | 35.0% | |
| GTGAGAGGTGAAAGTTTGAA+AGG | - | chr5_1:57394198-57394217 | None:intergenic | 40.0% | |
| AAATAGAGAAAGGGAAAGGG+GGG | - | chr5_1:57394335-57394354 | None:intergenic | 40.0% | |
| CTTTGATATGCAACAACACG+TGG | + | chr5_1:57394496-57394515 | Msa0739230:exon | 40.0% | |
| ACCAAGAAACACAGATGTGT+AGG | + | chr5_1:57394555-57394574 | Msa0739230:CDS | 40.0% | |
| TCCTACACATCTGTGTTTCT+TGG | - | chr5_1:57394559-57394578 | None:intergenic | 40.0% | |
| !! | CAACGGTTGTAGTTTGTTTG+AGG | - | chr5_1:57394613-57394632 | None:intergenic | 40.0% |
| ! | TCCACCTCTCAATTTTGCTA+TGG | + | chr5_1:57394779-57394798 | Msa0739230:CDS | 40.0% |
| ACCATAGCAAAATTGAGAGG+TGG | - | chr5_1:57394783-57394802 | None:intergenic | 40.0% | |
| !! | GATAATGGCATTTTCCGTTC+TGG | + | chr5_1:57394804-57394823 | Msa0739230:CDS | 40.0% |
| AAGGTTCAGGAAAACCAGAA+CGG | - | chr5_1:57394821-57394840 | None:intergenic | 40.0% | |
| AAAGAGAAGTTGGAAGGTTC+AGG | - | chr5_1:57394834-57394853 | None:intergenic | 40.0% | |
| TGAAGGAAAGAGAAGTTGGA+AGG | - | chr5_1:57394840-57394859 | None:intergenic | 40.0% | |
| GGTTTGAAGGAAAGAGAAGT+TGG | - | chr5_1:57394844-57394863 | None:intergenic | 40.0% | |
| TTCTCTTTCCTTCAAACCCT+TGG | + | chr5_1:57394846-57394865 | Msa0739230:CDS | 40.0% | |
| TTAGCTTCTGGATATGGTTC+AGG | - | chr5_1:57395074-57395093 | None:intergenic | 40.0% | |
| ACCATATCCAGAAGCTAACT+TGG | + | chr5_1:57395076-57395095 | Msa0739230:CDS | 40.0% | |
| ! | TCCAAGTTAGCTTCTGGATA+TGG | - | chr5_1:57395080-57395099 | None:intergenic | 40.0% |
| ! | AGAAACTCCAAGTTAGCTTC+TGG | - | chr5_1:57395086-57395105 | None:intergenic | 40.0% |
| ! | GGGATGAAGCTTTATCACTT+TGG | + | chr5_1:57395116-57395135 | Msa0739230:CDS | 40.0% |
| !! | CTTTGGAATTGAGGGTCATA+AGG | + | chr5_1:57395133-57395152 | Msa0739230:CDS | 40.0% |
| !! | CTTCAAGTTGGTGTATGGTA+TGG | + | chr5_1:57395352-57395371 | Msa0739230:intron | 40.0% |
| AGCCAATGAATTGCTATGGT+AGG | + | chr5_1:57395433-57395452 | Msa0739230:intron | 40.0% | |
| GGTAGGTTATATGAGGGAAA+AGG | + | chr5_1:57395450-57395469 | Msa0739230:intron | 40.0% | |
| CATACAGCTGAAGATCATAG+AGG | - | chr5_1:57395865-57395884 | None:intergenic | 40.0% | |
| CTGTTTGATGGAATCTAAGC+TGG | + | chr5_1:57395926-57395945 | Msa0739230:intron | 40.0% | |
| TTCCCCTTTCTTTGTCATGA+TGG | - | chr5_1:57396116-57396135 | None:intergenic | 40.0% | |
| CATGACAAAGAAAGGGGAAA+AGG | + | chr5_1:57396117-57396136 | Msa0739230:intron | 40.0% | |
| CCTAATCCACCAAAAACACA+TGG | - | chr5_1:57396377-57396396 | None:intergenic | 40.0% | |
| !!! | CCATGTGTTTTTGGTGGATT+AGG | + | chr5_1:57396374-57396393 | Msa0739230:intron | 40.0% |
| ! | TGGAGGGTTTTCAGTACTTT+TGG | + | chr5_1:57396606-57396625 | Msa0739230:intron | 40.0% |
| ! | GAAGAACTTTTAGTGCTTCC+CGG | - | chr5_1:57396872-57396891 | None:intergenic | 40.0% |
| ! | GGTGCTGTAAACAACAAGAA+TGG | - | chr5_1:57397276-57397295 | None:intergenic | 40.0% |
| AGCTTGTGAAAGTGAATCCA+AGG | + | chr5_1:57397525-57397544 | Msa0739230:three_prime_UTR | 40.0% | |
| TTGTTGCTGCAATGCTTTGA+AGG | - | chr5_1:57397592-57397611 | None:intergenic | 40.0% | |
| !! | TCAAAGCATTGCAGCAACAA+AGG | + | chr5_1:57397592-57397611 | Msa0739230:three_prime_UTR | 40.0% |
| GATATTTGGAGGGAGAGAGT+GGG | - | chr5_1:57394261-57394280 | None:intergenic | 45.0% | |
| TGATATTTGGAGGGAGAGAG+TGG | - | chr5_1:57394262-57394281 | None:intergenic | 45.0% | |
| !!! | GGGAAGGTTTTGGGATCAAA+GGG | - | chr5_1:57394315-57394334 | None:intergenic | 45.0% |
| TTGTGACAAAATAGACGGCG+AGG | + | chr5_1:57394646-57394665 | Msa0739230:CDS | 45.0% | |
| !! | CAAGTTGGTGTATGGTATGG+TGG | + | chr5_1:57395355-57395374 | Msa0739230:intron | 45.0% |
| !! | TGGTGTATGGTATGGTGGAT+TGG | + | chr5_1:57395360-57395379 | Msa0739230:intron | 45.0% |
| ! | TGGCATGTGAAGTCTTTTCC+AGG | + | chr5_1:57395946-57395965 | Msa0739230:intron | 45.0% |
| ! | GGCATGTGAAGTCTTTTCCA+GGG | + | chr5_1:57395947-57395966 | Msa0739230:intron | 45.0% |
| !! | TTGCCTTCTTGGTGTTCCTA+GGG | - | chr5_1:57396184-57396203 | None:intergenic | 45.0% |
| !! | TTTGCCTTCTTGGTGTTCCT+AGG | - | chr5_1:57396185-57396204 | None:intergenic | 45.0% |
| ATGTTGAATGCACGATCGAG+AGG | - | chr5_1:57396233-57396252 | None:intergenic | 45.0% | |
| !! | CTGAGTGTGTTGATTGACTG+TGG | + | chr5_1:57396295-57396314 | Msa0739230:intron | 45.0% |
| !!! | TGGAACCCATGTGTTTTTGG+TGG | + | chr5_1:57396368-57396387 | Msa0739230:intron | 45.0% |
| ! | AACTTTTAGTGCTTCCCGGA+TGG | - | chr5_1:57396868-57396887 | None:intergenic | 45.0% |
| AATTCACTGTAAGCGGGGAA+AGG | + | chr5_1:57397008-57397027 | Msa0739230:CDS | 45.0% | |
| ! | TGTTGTTTACAGCACCGAAC+AGG | + | chr5_1:57397280-57397299 | Msa0739230:intron | 45.0% |
| ATCCGACTAAACAGCCTGTT+CGG | - | chr5_1:57397297-57397316 | None:intergenic | 45.0% | |
| AAGCTCGAGTTTCTGATCAG+AGG | + | chr5_1:57397386-57397405 | Msa0739230:CDS | 45.0% | |
| !! | AATATATATTGAATTATTAT+AGG | + | chr5_1:57396403-57396422 | Msa0739230:intron | 5.0% |
| !!! | GGGGAAGGTTTTGGGATCAA+AGG | - | chr5_1:57394316-57394335 | None:intergenic | 50.0% |
| AGCGAAGACCAAGGGTTTGA+AGG | - | chr5_1:57394857-57394876 | None:intergenic | 50.0% | |
| ! | CATGATGGAGCGAAGACCAA+GGG | - | chr5_1:57394865-57394884 | None:intergenic | 50.0% |
| ! | ACATGATGGAGCGAAGACCA+AGG | - | chr5_1:57394866-57394885 | None:intergenic | 50.0% |
| GGGAAAAGGGGTCATAAAGC+TGG | + | chr5_1:57395464-57395483 | Msa0739230:intron | 50.0% | |
| CAACCCTAGGAACACCAAGA+AGG | + | chr5_1:57396178-57396197 | Msa0739230:intron | 50.0% | |
| ACGATCGAGAGGCAAGTAAC+CGG | - | chr5_1:57396222-57396241 | None:intergenic | 50.0% | |
| ACATCCCAGAAGACACCATC+CGG | + | chr5_1:57396850-57396869 | Msa0739230:CDS | 50.0% | |
| ! | ATGGCTTTTCCCGGACAAGA+TGG | - | chr5_1:57397097-57397116 | None:intergenic | 50.0% |
| CACCGAACAGGCTGTTTAGT+CGG | + | chr5_1:57397292-57397311 | Msa0739230:CDS | 50.0% | |
| ! | GGGAAAGGGGGGAAGGTTTT+GGG | - | chr5_1:57394324-57394343 | None:intergenic | 55.0% |
| ! | AGGGAAAGGGGGGAAGGTTT+TGG | - | chr5_1:57394325-57394344 | None:intergenic | 55.0% |
| AGAGAAAGGGAAAGGGGGGA+AGG | - | chr5_1:57394331-57394350 | None:intergenic | 55.0% | |
| CATCCCAGAAGACACCATCC+GGG | + | chr5_1:57396851-57396870 | Msa0739230:CDS | 55.0% | |
| CTTCCCGGATGGTGTCTTCT+GGG | - | chr5_1:57396857-57396876 | None:intergenic | 55.0% | |
| GCTTCCCGGATGGTGTCTTC+TGG | - | chr5_1:57396858-57396877 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 57394155 | 57397908 | 57394155 | ID=Msa0739230;Name=Msa0739230 |
| chr5_1 | mRNA | 57394155 | 57397908 | 57394155 | ID=Msa0739230-mRNA-1;Parent=Msa0739230;Name=Msa0739230-mRNA-1;_AED=0.09;_eAED=0.09;_QI=348|0.66|0.85|0.85|0.83|0.71|7|431|243 |
| chr5_1 | exon | 57394155 | 57394669 | 57394155 | ID=Msa0739230-mRNA-1:exon:16286;Parent=Msa0739230-mRNA-1 |
| chr5_1 | exon | 57394770 | 57394883 | 57394770 | ID=Msa0739230-mRNA-1:exon:16287;Parent=Msa0739230-mRNA-1 |
| chr5_1 | exon | 57395061 | 57395154 | 57395061 | ID=Msa0739230-mRNA-1:exon:16288;Parent=Msa0739230-mRNA-1 |
| chr5_1 | exon | 57395535 | 57395603 | 57395535 | ID=Msa0739230-mRNA-1:exon:16289;Parent=Msa0739230-mRNA-1 |
| chr5_1 | exon | 57396837 | 57396894 | 57396837 | ID=Msa0739230-mRNA-1:exon:16290;Parent=Msa0739230-mRNA-1 |
| chr5_1 | exon | 57396986 | 57397029 | 57396986 | ID=Msa0739230-mRNA-1:exon:16291;Parent=Msa0739230-mRNA-1 |
| chr5_1 | exon | 57397292 | 57397908 | 57397292 | ID=Msa0739230-mRNA-1:exon:16292;Parent=Msa0739230-mRNA-1 |
| chr5_1 | five_prime_UTR | 57394155 | 57394502 | 57394155 | ID=Msa0739230-mRNA-1:five_prime_utr;Parent=Msa0739230-mRNA-1 |
| chr5_1 | CDS | 57394503 | 57394669 | 57394503 | ID=Msa0739230-mRNA-1:cds;Parent=Msa0739230-mRNA-1 |
| chr5_1 | CDS | 57394770 | 57394883 | 57394770 | ID=Msa0739230-mRNA-1:cds;Parent=Msa0739230-mRNA-1 |
| chr5_1 | CDS | 57395061 | 57395154 | 57395061 | ID=Msa0739230-mRNA-1:cds;Parent=Msa0739230-mRNA-1 |
| chr5_1 | CDS | 57395535 | 57395603 | 57395535 | ID=Msa0739230-mRNA-1:cds;Parent=Msa0739230-mRNA-1 |
| chr5_1 | CDS | 57396837 | 57396894 | 57396837 | ID=Msa0739230-mRNA-1:cds;Parent=Msa0739230-mRNA-1 |
| chr5_1 | CDS | 57396986 | 57397029 | 57396986 | ID=Msa0739230-mRNA-1:cds;Parent=Msa0739230-mRNA-1 |
| chr5_1 | CDS | 57397292 | 57397477 | 57397292 | ID=Msa0739230-mRNA-1:cds;Parent=Msa0739230-mRNA-1 |
| chr5_1 | three_prime_UTR | 57397478 | 57397908 | 57397478 | ID=Msa0739230-mRNA-1:three_prime_utr;Parent=Msa0739230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
