Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819650 | XP_003616881.1 | 75.686 | 255 | 7 | 2 | 1 | 255 | 1 | 200 | 1.13e-131 | 382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819650 | sp|Q9ZVN4|DSP1_ARATH | 53.629 | 248 | 58 | 4 | 9 | 255 | 4 | 195 | 1.81e-81 | 247 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819650 | G7KH96 | 75.686 | 255 | 7 | 2 | 1 | 255 | 1 | 200 | 5.42e-132 | 382 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0739230 | Msa0819650 | 0.831386 | 1.718790e-55 | -8.615850e-47 |
| Msa0781920 | Msa0819650 | 0.813901 | 2.024151e-51 | -8.615850e-47 |
| Msa0819650 | Msa0859870 | 0.831248 | 1.859033e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819650 | MtrunA17_Chr5g0438971 | 75.686 | 255 | 7 | 2 | 1 | 255 | 1 | 200 | 1.04e-135 | 382 |
| Msa0819650 | MtrunA17_Chr4g0075511 | 52.155 | 232 | 53 | 3 | 27 | 255 | 1 | 177 | 7.33e-78 | 234 |
| Msa0819650 | MtrunA17_Chr7g0249271 | 45.327 | 214 | 62 | 3 | 46 | 259 | 5 | 163 | 8.43e-60 | 189 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819650 | AT1G05000.1 | 53.629 | 248 | 58 | 4 | 9 | 255 | 4 | 195 | 1.84e-82 | 247 |
| Msa0819650 | AT1G05000.2 | 52.308 | 260 | 75 | 5 | 9 | 255 | 4 | 227 | 2.26e-82 | 248 |
| Msa0819650 | AT2G32960.1 | 48.846 | 260 | 84 | 5 | 12 | 255 | 11 | 237 | 3.89e-77 | 235 |
| Msa0819650 | AT4G03960.1 | 56.931 | 202 | 32 | 2 | 54 | 255 | 25 | 171 | 1.57e-75 | 229 |
| Msa0819650 | AT3G02800.1 | 49.000 | 200 | 47 | 2 | 56 | 255 | 13 | 157 | 3.65e-61 | 192 |
| Msa0819650 | AT5G16480.1 | 48.077 | 208 | 52 | 3 | 48 | 255 | 5 | 156 | 3.46e-58 | 185 |
| Msa0819650 | AT1G05000.3 | 57.627 | 118 | 48 | 2 | 9 | 125 | 4 | 120 | 1.88e-39 | 136 |
| Msa0819650 | AT5G16480.2 | 68.421 | 76 | 23 | 1 | 48 | 123 | 5 | 79 | 3.38e-28 | 104 |
Find 68 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTACACATCTGTGTTTCT+TGG | 0.204782 | 5_3:-56360829 | None:intergenic |
| GCTTCCCGGATGGTGTCTTC+TGG | 0.213799 | 5_3:-56363073 | None:intergenic |
| TCCAAGTTAGCTTCTGGATA+TGG | 0.250782 | 5_3:-56361254 | None:intergenic |
| ATTGTTAGTTGATTGATATT+TGG | 0.296635 | 5_3:-56360533 | None:intergenic |
| AAAGAGAAGTTGGAAGGTTC+AGG | 0.317727 | 5_3:-56361004 | None:intergenic |
| CGCTTACAGTGAATTATAAC+TGG | 0.335487 | 5_3:-56363223 | None:intergenic |
| TTGTTGCTGCAATGCCTTGA+AGG | 0.342205 | 5_3:-56363817 | None:intergenic |
| GAAAATAGAGAAAGGGAAAG+GGG | 0.355365 | 5_3:-56360596 | None:intergenic |
| AGAAACTCCAAGTTAGCTTC+TGG | 0.360302 | 5_3:-56361260 | None:intergenic |
| TTAGCTTCTGGATATGGTTC+AGG | 0.367111 | 5_3:-56361248 | None:intergenic |
| TTCTCTTTCCTTCAAACCCT+TGG | 0.368110 | 5_3:+56361019 | Msa0819650:CDS |
| GAAGAACTTTCAGCGCTTCC+CGG | 0.383873 | 5_3:-56363087 | None:intergenic |
| GGAATCAAGCTTTATCACTT+TGG | 0.385478 | 5_3:+56361293 | Msa0819650:CDS |
| CTTCCCGGATGGTGTCTTCT+GGG | 0.396806 | 5_3:-56363072 | None:intergenic |
| GGTTTGAAGGAAAGAGAAGT+TGG | 0.397482 | 5_3:-56361014 | None:intergenic |
| GAAGCGCTGAAAGTTCTTCT+TGG | 0.399425 | 5_3:+56363091 | Msa0819650:CDS |
| AGAAAATAGAGAAAGGGAAA+GGG | 0.403951 | 5_3:-56360597 | None:intergenic |
| CTTTATCACTTTGGAATTGA+GGG | 0.406445 | 5_3:+56361302 | Msa0819650:CDS |
| CTTTGGAATTGAGGGTCATA+AGG | 0.410508 | 5_3:+56361310 | Msa0819650:CDS |
| ACCATATCCAGAAGCTAACT+TGG | 0.415247 | 5_3:+56361253 | Msa0819650:CDS |
| AGAGAAAGAGAGAGTTTGAA+TGG | 0.415388 | 5_3:-56360494 | None:intergenic |
| GCTTTATCACTTTGGAATTG+AGG | 0.419386 | 5_3:+56361301 | Msa0819650:CDS |
| TGATATTTGGAGGGAGAGAG+TGG | 0.426980 | 5_3:-56360520 | None:intergenic |
| TTGGAGTTTCTCAAGTCAAA+TGG | 0.427803 | 5_3:+56361272 | Msa0819650:CDS |
| AAGAGAAAGAAAATAGAGAA+AGG | 0.430981 | 5_3:-56360604 | None:intergenic |
| TTGAATAATAAAATAGGAAA+AGG | 0.434491 | 5_3:+56363785 | Msa0819650:CDS |
| AGAGAAAGAAAATAGAGAAA+GGG | 0.450418 | 5_3:-56360603 | None:intergenic |
| TGTTGTTTACAGCACCGAAC+AGG | 0.463983 | 5_3:+56363506 | Msa0819650:intron |
| AAGAAAATAGAGAAAGGGAA+AGG | 0.474648 | 5_3:-56360598 | None:intergenic |
| ATCCGACTAAACAGCCTGTT+CGG | 0.476274 | 5_3:-56363520 | None:intergenic |
| GTTAGTTGATTGATATTTGG+AGG | 0.483903 | 5_3:-56360530 | None:intergenic |
| AAAATAGAGAAAGGGAAAGG+GGG | 0.490562 | 5_3:-56360595 | None:intergenic |
| ACATCCCAGAAGACACCATC+CGG | 0.490587 | 5_3:+56363068 | Msa0819650:CDS |
| AGCGAAGACCAAGGGTTTGA+AGG | 0.493469 | 5_3:-56361027 | None:intergenic |
| AAAGGTGATGAACTCCTTCA+AGG | 0.504073 | 5_3:+56363803 | Msa0819650:CDS |
| AAATAGAGAAAGGGAAAGGG+GGG | 0.505444 | 5_3:-56360594 | None:intergenic |
| ACACTCTTTCCTCTCTTCAA+AGG | 0.523615 | 5_3:+56360430 | Msa0819650:five_prime_UTR |
| TCTTCTGGGATGTTTACAAA+AGG | 0.529846 | 5_3:-56363058 | None:intergenic |
| TGAAGGAAAGAGAAGTTGGA+AGG | 0.530380 | 5_3:-56361010 | None:intergenic |
| CTTTGATATGCAACAACACG+TGG | 0.530657 | 5_3:+56360769 | Msa0819650:exon |
| AGTGTGTGTATGAATGTGTA+TGG | 0.531491 | 5_3:-56360681 | None:intergenic |
| AGCTTGTGAAAGTGAATCCA+AGG | 0.534237 | 5_3:+56363753 | Msa0819650:intron |
| GATATTTGGAGGGAGAGAGT+GGG | 0.538600 | 5_3:-56360519 | None:intergenic |
| AACTTTCAGCGCTTCCCGGA+TGG | 0.541040 | 5_3:-56363083 | None:intergenic |
| TACAGTGAATTATAACTGGA+TGG | 0.544806 | 5_3:-56363219 | None:intergenic |
| TTATTCAAAAGGTAGAACCT+TGG | 0.557698 | 5_3:-56363770 | None:intergenic |
| TTAGTTGATTGATATTTGGA+GGG | 0.558371 | 5_3:-56360529 | None:intergenic |
| CACCGAACAGGCTGTTTAGT+CGG | 0.558896 | 5_3:+56363518 | Msa0819650:CDS |
| TCAAGGCATTGCAGCAACAA+AGG | 0.568583 | 5_3:+56363820 | Msa0819650:CDS |
| ATTATTATTTAGATCGCCAA+AGG | 0.576179 | 5_3:-56363182 | None:intergenic |
| TATTTGTTTCCTTTGAAGAG+AGG | 0.576979 | 5_3:-56360439 | None:intergenic |
| GATGTTTGTGACAAAATAGA+CGG | 0.592212 | 5_3:+56360914 | Msa0819650:CDS |
| TCAACTAACAATCTCTGCAA+AGG | 0.595625 | 5_3:+56360544 | Msa0819650:five_prime_UTR |
| AAGCTCGAGTTTCAGATCAG+AGG | 0.597414 | 5_3:+56363612 | Msa0819650:CDS |
| CATGATGGAGCGAAGACCAA+GGG | 0.606131 | 5_3:-56361035 | None:intergenic |
| ACCATAGCAAAATTGAGAGG+TGG | 0.613290 | 5_3:-56360953 | None:intergenic |
| ACCAAGAAACACAGATGTGT+AGG | 0.615442 | 5_3:+56360828 | Msa0819650:CDS |
| AATTCACTGTAAGCGCGGAA+AGG | 0.621850 | 5_3:+56363231 | Msa0819650:CDS |
| ACAAACATCAACTTCATCAA+CGG | 0.625540 | 5_3:-56360900 | None:intergenic |
| TGTAACTTCTGTTAAAATCG+CGG | 0.632489 | 5_3:-56361726 | None:intergenic |
| CATCCCAGAAGACACCATCC+GGG | 0.632592 | 5_3:+56363069 | Msa0819650:CDS |
| GTTATAATTCACTGTAAGCG+CGG | 0.656341 | 5_3:+56363226 | Msa0819650:CDS |
| ACATGATGGAGCGAAGACCA+AGG | 0.657297 | 5_3:-56361036 | None:intergenic |
| TTTGAAGAGAGGAAAGAGTG+TGG | 0.668535 | 5_3:-56360428 | None:intergenic |
| TCAACCATAGCAAAATTGAG+AGG | 0.670609 | 5_3:-56360956 | None:intergenic |
| AAGGTTCAGGAAAACCAGAA+CGG | 0.690090 | 5_3:-56360991 | None:intergenic |
| TTGTGACAAAATAGACGGCG+AGG | 0.699028 | 5_3:+56360919 | Msa0819650:CDS |
| TTTGATATGCAACAACACGT+GGG | 0.736277 | 5_3:+56360770 | Msa0819650:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAACATAGATTAAAAA+AGG | - | chr5_3:56361359-56361378 | None:intergenic | 10.0% |
| !! | AATAAATAAAAAACATTGTT+CGG | + | chr5_3:56361875-56361894 | Msa0819650:intron | 10.0% |
| !!! | TAGTTATATTTTTGAAATTT+TGG | + | chr5_3:56362768-56362787 | Msa0819650:intron | 10.0% |
| !!! | AGTTTAAATTTTTACTCTTT+AGG | - | chr5_3:56360751-56360770 | None:intergenic | 15.0% |
| !! | TTACTAATAAATCATCAATT+GGG | - | chr5_3:56361163-56361182 | None:intergenic | 15.0% |
| !! | TTTACTAATAAATCATCAAT+TGG | - | chr5_3:56361164-56361183 | None:intergenic | 15.0% |
| !!! | ATATTGATTATTTGTTTGAT+GGG | + | chr5_3:56361203-56361222 | Msa0819650:intron | 15.0% |
| !! | ATTATAAAGTTATTACACTT+TGG | - | chr5_3:56362074-56362093 | None:intergenic | 15.0% |
| !! | AGTGTAATAACTTTATAATA+TGG | + | chr5_3:56362075-56362094 | Msa0819650:intron | 15.0% |
| !! | AATTATAATCACAATCAATT+TGG | + | chr5_3:56362155-56362174 | Msa0819650:intron | 15.0% |
| !! | ATATTTGACAAATTCATAAT+GGG | - | chr5_3:56362243-56362262 | None:intergenic | 15.0% |
| !!! | TATTTTTGGATATTGAATTA+TGG | + | chr5_3:56362664-56362683 | Msa0819650:intron | 15.0% |
| !! | ATCAACTAAATTAAACTTAT+TGG | - | chr5_3:56362933-56362952 | None:intergenic | 15.0% |
| !! | AAAAAAAAGTTATGCTAAAT+TGG | + | chr5_3:56363716-56363735 | Msa0819650:intron | 15.0% |
| !! | AAAAAAAGTTATGCTAAATT+GGG | + | chr5_3:56363717-56363736 | Msa0819650:intron | 15.0% |
| !!! | TACCTTTTGAATAATAAAAT+AGG | + | chr5_3:56363779-56363798 | Msa0819650:CDS | 15.0% |
| !!! | TTCCTATTTTATTATTCAAA+AGG | - | chr5_3:56363784-56363803 | None:intergenic | 15.0% |
| !! | TTGAATAATAAAATAGGAAA+AGG | + | chr5_3:56363785-56363804 | Msa0819650:CDS | 15.0% |
| !! | ATTGTTAGTTGATTGATATT+TGG | - | chr5_3:56360536-56360555 | None:intergenic | 20.0% |
| !!! | GATATTGATTATTTGTTTGA+TGG | + | chr5_3:56361202-56361221 | Msa0819650:intron | 20.0% |
| !! | AAACACTACAATTCATATAA+TGG | - | chr5_3:56361589-56361608 | None:intergenic | 20.0% |
| !!! | TATGTTATCATGTCATTTTT+TGG | + | chr5_3:56361949-56361968 | Msa0819650:intron | 20.0% |
| !!! | GGTTTTTTGTGAATATTTAA+TGG | + | chr5_3:56362176-56362195 | Msa0819650:intron | 20.0% |
| !! | GATATTTGACAAATTCATAA+TGG | - | chr5_3:56362244-56362263 | None:intergenic | 20.0% |
| !! | TATAGCTTAAAAGATGAATT+TGG | + | chr5_3:56362383-56362402 | Msa0819650:intron | 20.0% |
| !! | TTTGCAAAATTATTAGATTC+TGG | + | chr5_3:56362619-56362638 | Msa0819650:intron | 20.0% |
| !! | AATTTCGATATCATAATCAA+GGG | - | chr5_3:56362749-56362768 | None:intergenic | 20.0% |
| !! | TAATTTCGATATCATAATCA+AGG | - | chr5_3:56362750-56362769 | None:intergenic | 20.0% |
| !! | GTTAAACAAAAATCATAGAT+GGG | - | chr5_3:56362815-56362834 | None:intergenic | 20.0% |
| !! | AGTTAAACAAAAATCATAGA+TGG | - | chr5_3:56362816-56362835 | None:intergenic | 20.0% |
| !! | TAACACAATTTGAAGATTAA+TGG | - | chr5_3:56362889-56362908 | None:intergenic | 20.0% |
| !! | AAATTAAACTTATTGGCAAA+TGG | - | chr5_3:56362926-56362945 | None:intergenic | 20.0% |
| !! | CTATTCCTATATTTAATGAT+TGG | - | chr5_3:56363285-56363304 | None:intergenic | 20.0% |
| !! | TTCAAATATGAAAATGGTAT+AGG | - | chr5_3:56363677-56363696 | None:intergenic | 20.0% |
| !!! | TACCATTTTCATATTTGAAA+AGG | + | chr5_3:56363678-56363697 | Msa0819650:intron | 20.0% |
| !!! | TACCTTTTCAAATATGAAAA+TGG | - | chr5_3:56363683-56363702 | None:intergenic | 20.0% |
| ! | TTAGTTGATTGATATTTGGA+GGG | - | chr5_3:56360532-56360551 | None:intergenic | 25.0% |
| ! | AGAGAAAGAAAATAGAGAAA+GGG | - | chr5_3:56360606-56360625 | None:intergenic | 25.0% |
| ! | AAGAGAAAGAAAATAGAGAA+AGG | - | chr5_3:56360607-56360626 | None:intergenic | 25.0% |
| !!! | AATTTTGCTATGGTTGATAA+TGG | + | chr5_3:56360962-56360981 | Msa0819650:CDS | 25.0% |
| ! | GTGTATGTATATATACATGA+TGG | - | chr5_3:56361053-56361072 | None:intergenic | 25.0% |
| ! | TATAATTGAACAAAGATCAC+TGG | + | chr5_3:56361449-56361468 | Msa0819650:intron | 25.0% |
| !! | TGCAATTATTTTCTTCAAGT+TGG | + | chr5_3:56361517-56361536 | Msa0819650:intron | 25.0% |
| !! | TAATTTGTGACCTATTGAAA+TGG | + | chr5_3:56361561-56361580 | Msa0819650:intron | 25.0% |
| ! | AATTTGTGACCTATTGAAAT+GGG | + | chr5_3:56361562-56361581 | Msa0819650:intron | 25.0% |
| !!! | GATTTTAGCAAAATCAATCA+CGG | - | chr5_3:56361782-56361801 | None:intergenic | 25.0% |
| ! | TACATAACAAAGTACATGTT+TGG | - | chr5_3:56361814-56361833 | None:intergenic | 25.0% |
| !! | ATTATAATTTGAGATAACCC+TGG | - | chr5_3:56362144-56362163 | None:intergenic | 25.0% |
| ! | TTTGTGAATATTTAATGGCT+AGG | + | chr5_3:56362181-56362200 | Msa0819650:intron | 25.0% |
| ! | TTTCAACATAAAACGTTGAA+CGG | - | chr5_3:56362427-56362446 | None:intergenic | 25.0% |
| !!! | TATTCCATGAGCTTTATTTT+TGG | + | chr5_3:56362650-56362669 | Msa0819650:intron | 25.0% |
| ! | ATATCCAAAAATAAAGCTCA+TGG | - | chr5_3:56362657-56362676 | None:intergenic | 25.0% |
| !! | TCTAATCTCATTTGAAATTG+TGG | + | chr5_3:56363026-56363045 | Msa0819650:intron | 25.0% |
| !! | ATTTTGCAAGTAATAACCTT+TGG | + | chr5_3:56363166-56363185 | Msa0819650:CDS | 25.0% |
| ! | ATTATTATTTAGATCGCCAA+AGG | - | chr5_3:56363185-56363204 | None:intergenic | 25.0% |
| ! | ACTCACCAATCATTAAATAT+AGG | + | chr5_3:56363277-56363296 | Msa0819650:intron | 25.0% |
| ! | TAATAGGGTTCTATTAGATA+GGG | + | chr5_3:56363375-56363394 | Msa0819650:intron | 25.0% |
| ! | TGTACAAGAAAATACTCTTT+CGG | - | chr5_3:56363464-56363483 | None:intergenic | 25.0% |
| ! | TATTTGTTTCCTTTGAAGAG+AGG | - | chr5_3:56360442-56360461 | None:intergenic | 30.0% |
| !!! | ATGGTCTTTTGTTTTGTGAA+AGG | - | chr5_3:56360478-56360497 | None:intergenic | 30.0% |
| GTTAGTTGATTGATATTTGG+AGG | - | chr5_3:56360533-56360552 | None:intergenic | 30.0% | |
| AGAAAATAGAGAAAGGGAAA+GGG | - | chr5_3:56360600-56360619 | None:intergenic | 30.0% | |
| AAGAAAATAGAGAAAGGGAA+AGG | - | chr5_3:56360601-56360620 | None:intergenic | 30.0% | |
| !! | CTTGGTTCTTTTTCTTATGT+TGG | - | chr5_3:56360814-56360833 | None:intergenic | 30.0% |
| ACAAACATCAACTTCATCAA+CGG | - | chr5_3:56360903-56360922 | None:intergenic | 30.0% | |
| GATGTTTGTGACAAAATAGA+CGG | + | chr5_3:56360914-56360933 | Msa0819650:CDS | 30.0% | |
| !!! | GTGTTTTTGAGATTTGTGAT+TGG | + | chr5_3:56361128-56361147 | Msa0819650:intron | 30.0% |
| !! | CTTTATCACTTTGGAATTGA+GGG | + | chr5_3:56361302-56361321 | Msa0819650:CDS | 30.0% |
| ATGAATGCAAAAAGTGATCA+AGG | + | chr5_3:56361415-56361434 | Msa0819650:intron | 30.0% | |
| !!! | ATTTTCTTCAAGTTGGTGTA+TGG | + | chr5_3:56361524-56361543 | Msa0819650:intron | 30.0% |
| TATAATGGTCCCATTTCAAT+AGG | - | chr5_3:56361574-56361593 | None:intergenic | 30.0% | |
| TTTAAGCCAATGAATTGCTA+TGG | + | chr5_3:56361606-56361625 | Msa0819650:intron | 30.0% | |
| TGTAACTTCTGTTAAAATCG+CGG | - | chr5_3:56361729-56361748 | None:intergenic | 30.0% | |
| AAAGAAAACAGTATCCAATC+AGG | - | chr5_3:56361987-56362006 | None:intergenic | 30.0% | |
| AATATGGAATCACTGTTTGA+TGG | + | chr5_3:56362091-56362110 | Msa0819650:intron | 30.0% | |
| ! | TATTCTTGCTGTCTGTATAA+TGG | + | chr5_3:56362216-56362235 | Msa0819650:intron | 30.0% |
| ! | ATTCTTGCTGTCTGTATAAT+GGG | + | chr5_3:56362217-56362236 | Msa0819650:intron | 30.0% |
| ! | TCAACGTTTTATGTTGAAAC+TGG | + | chr5_3:56362428-56362447 | Msa0819650:intron | 30.0% |
| TTATGTTGAAACTGGTTAAC+TGG | + | chr5_3:56362436-56362455 | Msa0819650:intron | 30.0% | |
| ! | AGTCTCTAACTTTTATCGAT+CGG | - | chr5_3:56362508-56362527 | None:intergenic | 30.0% |
| ! | GACTATTGCACTAGTTTATT+TGG | + | chr5_3:56362524-56362543 | Msa0819650:intron | 30.0% |
| ! | TGCACTAGTTTATTTGGAAA+TGG | + | chr5_3:56362530-56362549 | Msa0819650:intron | 30.0% |
| ! | GGAATTGTTTTCAGTACTTT+TGG | + | chr5_3:56362789-56362808 | Msa0819650:intron | 30.0% |
| GCAATTTATCAACTGTTAGA+AGG | - | chr5_3:56362863-56362882 | None:intergenic | 30.0% | |
| TTAAACTTATTGGCAAATGG+TGG | - | chr5_3:56362923-56362942 | None:intergenic | 30.0% | |
| ! | TCATTTGAAATTGTGGATTC+AGG | + | chr5_3:56363033-56363052 | Msa0819650:intron | 30.0% |
| TACAGTGAATTATAACTGGA+TGG | - | chr5_3:56363222-56363241 | None:intergenic | 30.0% | |
| TCACAGATTAAAGACATTGT+CGG | - | chr5_3:56363348-56363367 | None:intergenic | 30.0% | |
| AATCTGTGATTTGAGCTAAT+AGG | + | chr5_3:56363359-56363378 | Msa0819650:intron | 30.0% | |
| ATCTGTGATTTGAGCTAATA+GGG | + | chr5_3:56363360-56363379 | Msa0819650:intron | 30.0% | |
| CTAATAGGGTTCTATTAGAT+AGG | + | chr5_3:56363374-56363393 | Msa0819650:intron | 30.0% | |
| GCTATAGAAAACTGCAAAAA+TGG | + | chr5_3:56363543-56363562 | Msa0819650:CDS | 30.0% | |
| TTATTCAAAAGGTAGAACCT+TGG | - | chr5_3:56363773-56363792 | None:intergenic | 30.0% | |
| !!! | CTTTTGTTTTGTGAAAGGAG+AGG | - | chr5_3:56360473-56360492 | None:intergenic | 35.0% |
| AGAGAAAGAGAGAGTTTGAA+TGG | - | chr5_3:56360497-56360516 | None:intergenic | 35.0% | |
| TCAACTAACAATCTCTGCAA+AGG | + | chr5_3:56360544-56360563 | Msa0819650:five_prime_UTR | 35.0% | |
| AAAATAGAGAAAGGGAAAGG+GGG | - | chr5_3:56360598-56360617 | None:intergenic | 35.0% | |
| GAAAATAGAGAAAGGGAAAG+GGG | - | chr5_3:56360599-56360618 | None:intergenic | 35.0% | |
| AGTGTGTGTATGAATGTGTA+TGG | - | chr5_3:56360684-56360703 | None:intergenic | 35.0% | |
| TTTGATATGCAACAACACGT+GGG | + | chr5_3:56360770-56360789 | Msa0819650:exon | 35.0% | |
| TCAACCATAGCAAAATTGAG+AGG | - | chr5_3:56360959-56360978 | None:intergenic | 35.0% | |
| TTGGAGTTTCTCAAGTCAAA+TGG | + | chr5_3:56361272-56361291 | Msa0819650:CDS | 35.0% | |
| ! | GGAATCAAGCTTTATCACTT+TGG | + | chr5_3:56361293-56361312 | Msa0819650:CDS | 35.0% |
| !! | GCTTTATCACTTTGGAATTG+AGG | + | chr5_3:56361301-56361320 | Msa0819650:CDS | 35.0% |
| GATAAGAGAGACATGTCAAT+TGG | - | chr5_3:56361484-56361503 | None:intergenic | 35.0% | |
| ! | GTCTCTCTTATCATCTTTTG+TGG | + | chr5_3:56361492-56361511 | Msa0819650:intron | 35.0% |
| AACCTACCATAGCAATTCAT+TGG | - | chr5_3:56361615-56361634 | None:intergenic | 35.0% | |
| TTGCTATGGTAGGTTATATG+AGG | + | chr5_3:56361620-56361639 | Msa0819650:intron | 35.0% | |
| TGCTATGGTAGGTTATATGA+GGG | + | chr5_3:56361621-56361640 | Msa0819650:intron | 35.0% | |
| GTAGGTTATATGAGGGAAAA+GGG | + | chr5_3:56361628-56361647 | Msa0819650:intron | 35.0% | |
| TAGGTTATATGAGGGAAAAG+GGG | + | chr5_3:56361629-56361648 | Msa0819650:intron | 35.0% | |
| GGTCTATTATTGATCCTGAT+TGG | + | chr5_3:56361970-56361989 | Msa0819650:intron | 35.0% | |
| TTCCATCATGACAAAGAAAG+AGG | + | chr5_3:56362288-56362307 | Msa0819650:intron | 35.0% | |
| TTCCTCTTTCTTTGTCATGA+TGG | - | chr5_3:56362293-56362312 | None:intergenic | 35.0% | |
| CATGACAAAGAAAGAGGAAA+AGG | + | chr5_3:56362294-56362313 | Msa0819650:intron | 35.0% | |
| TCTAAATCATGATCAACCCT+AGG | + | chr5_3:56362342-56362361 | Msa0819650:intron | 35.0% | |
| TTGCCTTCTTATTGTTCCTA+GGG | - | chr5_3:56362361-56362380 | None:intergenic | 35.0% | |
| TTTGCCTTCTTATTGTTCCT+AGG | - | chr5_3:56362362-56362381 | None:intergenic | 35.0% | |
| !! | TCGATTGTGTTGTTTGAATG+TGG | + | chr5_3:56362477-56362496 | Msa0819650:intron | 35.0% |
| AGTACTTCTTCTATATGCCA+AGG | + | chr5_3:56362690-56362709 | Msa0819650:intron | 35.0% | |
| !! | TCTTCTGGGATGTTTACAAA+AGG | - | chr5_3:56363061-56363080 | None:intergenic | 35.0% |
| CGCTTACAGTGAATTATAAC+TGG | - | chr5_3:56363226-56363245 | None:intergenic | 35.0% | |
| GTTATAATTCACTGTAAGCG+CGG | + | chr5_3:56363226-56363245 | Msa0819650:CDS | 35.0% | |
| ATAGTTACAACCATCTCGTT+TGG | + | chr5_3:56363305-56363324 | Msa0819650:intron | 35.0% | |
| ! | ATGGATTTTTCCAAACGAGA+TGG | - | chr5_3:56363318-56363337 | None:intergenic | 35.0% |
| AGACATTGTCGGGAAAAATA+TGG | - | chr5_3:56363337-56363356 | None:intergenic | 35.0% | |
| CACAGATTAAAGACATTGTC+GGG | - | chr5_3:56363347-56363366 | None:intergenic | 35.0% | |
| CACTTTCACAAGCTAAAGAA+AGG | - | chr5_3:56363747-56363766 | None:intergenic | 35.0% | |
| TTTGAAGAGAGGAAAGAGTG+TGG | - | chr5_3:56360431-56360450 | None:intergenic | 40.0% | |
| ACACTCTTTCCTCTCTTCAA+AGG | + | chr5_3:56360430-56360449 | Msa0819650:five_prime_UTR | 40.0% | |
| AAATAGAGAAAGGGAAAGGG+GGG | - | chr5_3:56360597-56360616 | None:intergenic | 40.0% | |
| CTTTGATATGCAACAACACG+TGG | + | chr5_3:56360769-56360788 | Msa0819650:exon | 40.0% | |
| ACCAAGAAACACAGATGTGT+AGG | + | chr5_3:56360828-56360847 | Msa0819650:CDS | 40.0% | |
| TCCTACACATCTGTGTTTCT+TGG | - | chr5_3:56360832-56360851 | None:intergenic | 40.0% | |
| ! | TCCACCTCTCAATTTTGCTA+TGG | + | chr5_3:56360952-56360971 | Msa0819650:CDS | 40.0% |
| ACCATAGCAAAATTGAGAGG+TGG | - | chr5_3:56360956-56360975 | None:intergenic | 40.0% | |
| !! | GATAATGGCATTTTCCGTTC+TGG | + | chr5_3:56360977-56360996 | Msa0819650:CDS | 40.0% |
| AAGGTTCAGGAAAACCAGAA+CGG | - | chr5_3:56360994-56361013 | None:intergenic | 40.0% | |
| AAAGAGAAGTTGGAAGGTTC+AGG | - | chr5_3:56361007-56361026 | None:intergenic | 40.0% | |
| TGAAGGAAAGAGAAGTTGGA+AGG | - | chr5_3:56361013-56361032 | None:intergenic | 40.0% | |
| GGTTTGAAGGAAAGAGAAGT+TGG | - | chr5_3:56361017-56361036 | None:intergenic | 40.0% | |
| TTCTCTTTCCTTCAAACCCT+TGG | + | chr5_3:56361019-56361038 | Msa0819650:CDS | 40.0% | |
| TTAGCTTCTGGATATGGTTC+AGG | - | chr5_3:56361251-56361270 | None:intergenic | 40.0% | |
| ACCATATCCAGAAGCTAACT+TGG | + | chr5_3:56361253-56361272 | Msa0819650:CDS | 40.0% | |
| ! | TCCAAGTTAGCTTCTGGATA+TGG | - | chr5_3:56361257-56361276 | None:intergenic | 40.0% |
| ! | AGAAACTCCAAGTTAGCTTC+TGG | - | chr5_3:56361263-56361282 | None:intergenic | 40.0% |
| !! | CTTTGGAATTGAGGGTCATA+AGG | + | chr5_3:56361310-56361329 | Msa0819650:CDS | 40.0% |
| !! | CTTCAAGTTGGTGTATGGTA+TGG | + | chr5_3:56361529-56361548 | Msa0819650:intron | 40.0% |
| AGCCAATGAATTGCTATGGT+AGG | + | chr5_3:56361610-56361629 | Msa0819650:intron | 40.0% | |
| GGTAGGTTATATGAGGGAAA+AGG | + | chr5_3:56361627-56361646 | Msa0819650:intron | 40.0% | |
| CATACAGCTGAAGATCATAG+AGG | - | chr5_3:56362042-56362061 | None:intergenic | 40.0% | |
| CTGTTTGATGGAATCTAAGC+TGG | + | chr5_3:56362103-56362122 | Msa0819650:intron | 40.0% | |
| CAACCCTAGGAACAATAAGA+AGG | + | chr5_3:56362355-56362374 | Msa0819650:intron | 40.0% | |
| ! | GAAATGGAACCCATGTGTTT+TGG | + | chr5_3:56362546-56362565 | Msa0819650:intron | 40.0% |
| CCTAATCCACCAAAACACAT+GGG | - | chr5_3:56362558-56362577 | None:intergenic | 40.0% | |
| !!! | CCATGTGTTTTGGTGGATTA+GGG | + | chr5_3:56362556-56362575 | Msa0819650:intron | 40.0% |
| TTGCTTCTTCTTGTGTTCCT+TGG | - | chr5_3:56362710-56362729 | None:intergenic | 40.0% | |
| AGCTTGTGAAAGTGAATCCA+AGG | + | chr5_3:56363753-56363772 | Msa0819650:intron | 40.0% | |
| AAAGGTGATGAACTCCTTCA+AGG | + | chr5_3:56363803-56363822 | Msa0819650:CDS | 40.0% | |
| GATATTTGGAGGGAGAGAGT+GGG | - | chr5_3:56360522-56360541 | None:intergenic | 45.0% | |
| TGATATTTGGAGGGAGAGAG+TGG | - | chr5_3:56360523-56360542 | None:intergenic | 45.0% | |
| !!! | GGAAGGGTTTTGGGATCAAA+GGG | - | chr5_3:56360576-56360595 | None:intergenic | 45.0% |
| TTGTGACAAAATAGACGGCG+AGG | + | chr5_3:56360919-56360938 | Msa0819650:CDS | 45.0% | |
| !! | CAAGTTGGTGTATGGTATGG+TGG | + | chr5_3:56361532-56361551 | Msa0819650:intron | 45.0% |
| !! | TGGTGTATGGTATGGTGGAT+TGG | + | chr5_3:56361537-56361556 | Msa0819650:intron | 45.0% |
| ! | TGGCATGTGAAGTCTTTTCC+AGG | + | chr5_3:56362123-56362142 | Msa0819650:intron | 45.0% |
| ! | GGCATGTGAAGTCTTTTCCA+GGG | + | chr5_3:56362124-56362143 | Msa0819650:intron | 45.0% |
| !! | ATGGAACCCATGTGTTTTGG+TGG | + | chr5_3:56362549-56362568 | Msa0819650:intron | 45.0% |
| !!! | CCCATGTGTTTTGGTGGATT+AGG | + | chr5_3:56362555-56362574 | Msa0819650:intron | 45.0% |
| CCCTAATCCACCAAAACACA+TGG | - | chr5_3:56362559-56362578 | None:intergenic | 45.0% | |
| ACTTATTGGCAAATGGTGGC+TGG | - | chr5_3:56362919-56362938 | None:intergenic | 45.0% | |
| !! | GAAGCGCTGAAAGTTCTTCT+TGG | + | chr5_3:56363091-56363110 | Msa0819650:CDS | 45.0% |
| AATTCACTGTAAGCGCGGAA+AGG | + | chr5_3:56363231-56363250 | Msa0819650:CDS | 45.0% | |
| ! | TGTTGTTTACAGCACCGAAC+AGG | + | chr5_3:56363506-56363525 | Msa0819650:intron | 45.0% |
| ATCCGACTAAACAGCCTGTT+CGG | - | chr5_3:56363523-56363542 | None:intergenic | 45.0% | |
| AAGCTCGAGTTTCAGATCAG+AGG | + | chr5_3:56363612-56363631 | Msa0819650:CDS | 45.0% | |
| TTGTTGCTGCAATGCCTTGA+AGG | - | chr5_3:56363820-56363839 | None:intergenic | 45.0% | |
| !! | TCAAGGCATTGCAGCAACAA+AGG | + | chr5_3:56363820-56363839 | Msa0819650:CDS | 45.0% |
| !! | AATATATATTGAATTATTAT+AGG | + | chr5_3:56362584-56362603 | Msa0819650:intron | 5.0% |
| !!! | GGGAAGGGTTTTGGGATCAA+AGG | - | chr5_3:56360577-56360596 | None:intergenic | 50.0% |
| AGCGAAGACCAAGGGTTTGA+AGG | - | chr5_3:56361030-56361049 | None:intergenic | 50.0% | |
| ! | CATGATGGAGCGAAGACCAA+GGG | - | chr5_3:56361038-56361057 | None:intergenic | 50.0% |
| ! | ACATGATGGAGCGAAGACCA+AGG | - | chr5_3:56361039-56361058 | None:intergenic | 50.0% |
| GGGAAAAGGGGTCATAAAGC+TGG | + | chr5_3:56361641-56361660 | Msa0819650:intron | 50.0% | |
| ATTGGCAAATGGTGGCTGGA+GGG | - | chr5_3:56362915-56362934 | None:intergenic | 50.0% | |
| TATTGGCAAATGGTGGCTGG+AGG | - | chr5_3:56362916-56362935 | None:intergenic | 50.0% | |
| ACATCCCAGAAGACACCATC+CGG | + | chr5_3:56363068-56363087 | Msa0819650:CDS | 50.0% | |
| GAAGAACTTTCAGCGCTTCC+CGG | - | chr5_3:56363090-56363109 | None:intergenic | 50.0% | |
| CACCGAACAGGCTGTTTAGT+CGG | + | chr5_3:56363518-56363537 | Msa0819650:CDS | 50.0% | |
| ! | GGAAAGGGGGGAAGGGTTTT+GGG | - | chr5_3:56360585-56360604 | None:intergenic | 55.0% |
| GAGAAAGGGAAAGGGGGGAA+GGG | - | chr5_3:56360592-56360611 | None:intergenic | 55.0% | |
| AGAGAAAGGGAAAGGGGGGA+AGG | - | chr5_3:56360593-56360612 | None:intergenic | 55.0% | |
| CATCCCAGAAGACACCATCC+GGG | + | chr5_3:56363069-56363088 | Msa0819650:CDS | 55.0% | |
| CTTCCCGGATGGTGTCTTCT+GGG | - | chr5_3:56363075-56363094 | None:intergenic | 55.0% | |
| AACTTTCAGCGCTTCCCGGA+TGG | - | chr5_3:56363086-56363105 | None:intergenic | 55.0% | |
| ! | CTTTTGCTGCTGCAAAGCGC+TGG | - | chr5_3:56363595-56363614 | None:intergenic | 55.0% |
| ! | GGGAAAGGGGGGAAGGGTTT+TGG | - | chr5_3:56360586-56360605 | None:intergenic | 60.0% |
| GCTTCCCGGATGGTGTCTTC+TGG | - | chr5_3:56363076-56363095 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 56360420 | 56363847 | 56360420 | ID=Msa0819650;Name=Msa0819650 |
| chr5_3 | mRNA | 56360420 | 56363847 | 56360420 | ID=Msa0819650-mRNA-1;Parent=Msa0819650;Name=Msa0819650-mRNA-1;_AED=0.24;_eAED=0.19;_QI=356|0.4|0.33|0.83|1|1|6|0|284 |
| chr5_3 | exon | 56360420 | 56361056 | 56360420 | ID=Msa0819650-mRNA-1:exon:17014;Parent=Msa0819650-mRNA-1 |
| chr5_3 | exon | 56361238 | 56361331 | 56361238 | ID=Msa0819650-mRNA-1:exon:17015;Parent=Msa0819650-mRNA-1 |
| chr5_3 | exon | 56361712 | 56361780 | 56361712 | ID=Msa0819650-mRNA-1:exon:17016;Parent=Msa0819650-mRNA-1 |
| chr5_3 | exon | 56363055 | 56363252 | 56363055 | ID=Msa0819650-mRNA-1:exon:17017;Parent=Msa0819650-mRNA-1 |
| chr5_3 | exon | 56363518 | 56363637 | 56363518 | ID=Msa0819650-mRNA-1:exon:17018;Parent=Msa0819650-mRNA-1 |
| chr5_3 | exon | 56363755 | 56363847 | 56363755 | ID=Msa0819650-mRNA-1:exon:17019;Parent=Msa0819650-mRNA-1 |
| chr5_3 | five_prime_UTR | 56360420 | 56360775 | 56360420 | ID=Msa0819650-mRNA-1:five_prime_utr;Parent=Msa0819650-mRNA-1 |
| chr5_3 | CDS | 56360776 | 56361056 | 56360776 | ID=Msa0819650-mRNA-1:cds;Parent=Msa0819650-mRNA-1 |
| chr5_3 | CDS | 56361238 | 56361331 | 56361238 | ID=Msa0819650-mRNA-1:cds;Parent=Msa0819650-mRNA-1 |
| chr5_3 | CDS | 56361712 | 56361780 | 56361712 | ID=Msa0819650-mRNA-1:cds;Parent=Msa0819650-mRNA-1 |
| chr5_3 | CDS | 56363055 | 56363252 | 56363055 | ID=Msa0819650-mRNA-1:cds;Parent=Msa0819650-mRNA-1 |
| chr5_3 | CDS | 56363518 | 56363637 | 56363518 | ID=Msa0819650-mRNA-1:cds;Parent=Msa0819650-mRNA-1 |
| chr5_3 | CDS | 56363755 | 56363847 | 56363755 | ID=Msa0819650-mRNA-1:cds;Parent=Msa0819650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
