Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859870 | XP_003616881.1 | 88.066 | 243 | 6 | 1 | 1 | 243 | 1 | 220 | 2.86e-154 | 437 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859870 | sp|Q9ZVN4|DSP1_ARATH | 61.638 | 232 | 64 | 3 | 9 | 239 | 4 | 211 | 8.88e-97 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859870 | G7KH96 | 88.066 | 243 | 6 | 1 | 1 | 243 | 1 | 220 | 1.37e-154 | 437 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0669740 | Msa0859870 | 0.801688 | 8.002352e-49 | -8.615850e-47 |
| Msa0739230 | Msa0859870 | 0.940982 | 9.169606e-101 | -8.615850e-47 |
| Msa0781920 | Msa0859870 | 0.891538 | 3.625143e-74 | -8.615850e-47 |
| Msa0819650 | Msa0859870 | 0.831248 | 1.859033e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859870 | MtrunA17_Chr5g0438971 | 88.066 | 243 | 6 | 1 | 1 | 243 | 1 | 220 | 2.63e-158 | 437 |
| Msa0859870 | MtrunA17_Chr4g0075511 | 62.037 | 216 | 56 | 2 | 27 | 239 | 1 | 193 | 8.13e-94 | 273 |
| Msa0859870 | MtrunA17_Chr7g0249271 | 54.255 | 188 | 63 | 1 | 46 | 233 | 5 | 169 | 5.78e-70 | 213 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859870 | AT1G05000.1 | 61.638 | 232 | 64 | 3 | 9 | 239 | 4 | 211 | 9.03e-98 | 285 |
| Msa0859870 | AT1G05000.2 | 59.836 | 244 | 81 | 4 | 9 | 239 | 4 | 243 | 9.16e-98 | 286 |
| Msa0859870 | AT2G32960.1 | 55.328 | 244 | 96 | 3 | 12 | 243 | 15 | 257 | 3.54e-92 | 272 |
| Msa0859870 | AT4G03960.1 | 67.895 | 190 | 38 | 1 | 54 | 243 | 25 | 191 | 4.63e-92 | 270 |
| Msa0859870 | AT3G02800.1 | 56.216 | 185 | 58 | 1 | 56 | 240 | 13 | 174 | 5.29e-72 | 219 |
| Msa0859870 | AT5G16480.1 | 55.914 | 186 | 58 | 2 | 48 | 233 | 5 | 166 | 1.68e-67 | 207 |
| Msa0859870 | AT1G05000.3 | 58.475 | 118 | 47 | 2 | 9 | 125 | 4 | 120 | 4.75e-40 | 136 |
| Msa0859870 | AT5G16480.2 | 67.105 | 76 | 24 | 1 | 48 | 123 | 5 | 79 | 1.22e-27 | 102 |
Find 73 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTATTCTGACTTGATAAA+TGG | 0.204669 | 5_4:+58381734 | Msa0859870:three_prime_UTR |
| TCCTACACATCTGTGTTTCT+TGG | 0.204782 | 5_4:-58378364 | None:intergenic |
| GCTTCCCGGATGGTGTCTTC+TGG | 0.230489 | 5_4:-58380703 | None:intergenic |
| TCCAAGTTAGCTTCTGGATA+TGG | 0.250782 | 5_4:-58378785 | None:intergenic |
| CGCTTACAGTGAATTATAAC+TGG | 0.264371 | 5_4:-58380848 | None:intergenic |
| ATTGTTAGTTGATTGATATT+TGG | 0.296635 | 5_4:-58378082 | None:intergenic |
| AAAGAGAAGTTGGAAGGTTC+AGG | 0.317727 | 5_4:-58378539 | None:intergenic |
| ACACTCATTGCTCATGAATA+AGG | 0.322193 | 5_4:-58381595 | None:intergenic |
| TTGTTGCTGCAATGCTTTGA+AGG | 0.336187 | 5_4:-58381438 | None:intergenic |
| GAAGCACTAAAAGTTCTTCT+TGG | 0.348753 | 5_4:+58380721 | Msa0859870:CDS |
| GAAAATAGAGAAAGGGAAAG+GGG | 0.355365 | 5_4:-58378144 | None:intergenic |
| AGAAACTCCAAGTTAGCTTC+TGG | 0.360302 | 5_4:-58378791 | None:intergenic |
| TTCAAATATGAAAATGGTAT+AGG | 0.362929 | 5_4:-58381296 | None:intergenic |
| TTAGCTTCTGGATATGGTTC+AGG | 0.367111 | 5_4:-58378779 | None:intergenic |
| TTCTCTTTCCTTCAAACCCT+TGG | 0.368110 | 5_4:+58378554 | Msa0859870:CDS |
| TTGGAGTTTCTCAAGTCAAA+TGG | 0.388214 | 5_4:+58378803 | Msa0859870:CDS |
| CTTTGGAATTGAGGGTCATA+AGG | 0.396133 | 5_4:+58378841 | Msa0859870:CDS |
| GGTTTGAAGGAAAGAGAAGT+TGG | 0.397482 | 5_4:-58378549 | None:intergenic |
| AGAAAATAGAGAAAGGGAAA+GGG | 0.403951 | 5_4:-58378145 | None:intergenic |
| CAACGGTTGTAGTTTGTTTG+AGG | 0.414210 | 5_4:-58378418 | None:intergenic |
| ACCATATCCAGAAGCTAACT+TGG | 0.415247 | 5_4:+58378784 | Msa0859870:CDS |
| CTTCCCGGATGGTGTCTTCT+GGG | 0.417463 | 5_4:-58380702 | None:intergenic |
| GGGATCACGCTTTATCACTT+TGG | 0.423965 | 5_4:+58378824 | Msa0859870:CDS |
| TGATATTTGGAGGGAGAGAG+TGG | 0.426980 | 5_4:-58378069 | None:intergenic |
| CAAAGAGAAAATAAAATAGT+TGG | 0.429666 | 5_4:-58381549 | None:intergenic |
| CTTTATCACTTTGGAATTGA+GGG | 0.431180 | 5_4:+58378833 | Msa0859870:CDS |
| TTGAATAATAAAATAGGAAA+AGG | 0.434491 | 5_4:+58381406 | Msa0859870:three_prime_UTR |
| GCTTTATCACTTTGGAATTG+AGG | 0.440532 | 5_4:+58378832 | Msa0859870:CDS |
| AAGAGAAAGAAAATAGAGAA+AGG | 0.448432 | 5_4:-58378152 | None:intergenic |
| AGAGAAAGAAAATAGAGAAA+GGG | 0.450418 | 5_4:-58378151 | None:intergenic |
| TTGAAGTGTGTATGAATGTA+TGG | 0.452151 | 5_4:-58378224 | None:intergenic |
| TGTTGTTTACAGCACCGAAC+AGG | 0.463983 | 5_4:+58381128 | Msa0859870:intron |
| CACTTTCACAAGCTAAAGAA+AGG | 0.465157 | 5_4:-58381365 | None:intergenic |
| AAGAAAATAGAGAAAGGGAA+AGG | 0.474648 | 5_4:-58378146 | None:intergenic |
| ATCCGACTAAACAGCCTGTT+CGG | 0.476274 | 5_4:-58381142 | None:intergenic |
| GTTAGTTGATTGATATTTGG+AGG | 0.483903 | 5_4:-58378079 | None:intergenic |
| TGGAGTTTCTCAAGTCAAAT+GGG | 0.484217 | 5_4:+58378804 | Msa0859870:CDS |
| AAAATAGAGAAAGGGAAAGG+GGG | 0.490562 | 5_4:-58378143 | None:intergenic |
| ACATCCCAGAAGACACCATC+CGG | 0.490587 | 5_4:+58380698 | Msa0859870:CDS |
| AGCGAAGACCAAGGGTTTGA+AGG | 0.493469 | 5_4:-58378562 | None:intergenic |
| AAATAGAGAAAGGGAAAGGG+GGG | 0.505444 | 5_4:-58378142 | None:intergenic |
| AGTTATAATTCACTGTAAGC+GGG | 0.526447 | 5_4:+58380850 | Msa0859870:CDS |
| TCTTCTGGGATGTTTACAAA+AGG | 0.529846 | 5_4:-58380688 | None:intergenic |
| TGAAGGAAAGAGAAGTTGGA+AGG | 0.530380 | 5_4:-58378545 | None:intergenic |
| ACAATCTTTCCTCTCTTCAA+AGG | 0.530508 | 5_4:+58377977 | Msa0859870:five_prime_UTR |
| AGCTTGTGAAAGTGAATCCA+AGG | 0.534237 | 5_4:+58381374 | Msa0859870:three_prime_UTR |
| CTTTGATATGCAACAACACG+TGG | 0.538040 | 5_4:+58378304 | Msa0859870:exon |
| GATATTTGGAGGGAGAGAGT+GGG | 0.538600 | 5_4:-58378068 | None:intergenic |
| TTATTCAAAAGGTAGAACCT+TGG | 0.557698 | 5_4:-58381391 | None:intergenic |
| TTAGTTGATTGATATTTGGA+GGG | 0.558371 | 5_4:-58378078 | None:intergenic |
| CACCGAACAGGCTGTTTAGT+CGG | 0.558896 | 5_4:+58381140 | Msa0859870:CDS |
| TCAAAGCATTGCAGCAACAA+AGG | 0.559466 | 5_4:+58381441 | Msa0859870:three_prime_UTR |
| TATTTGTTTCCTTTGAAGAG+AGG | 0.570158 | 5_4:-58377986 | None:intergenic |
| AATTCACTGTAAGCGGGGAA+AGG | 0.585086 | 5_4:+58380856 | Msa0859870:CDS |
| CAGTTATAATTCACTGTAAG+CGG | 0.590977 | 5_4:+58380849 | Msa0859870:CDS |
| GATGTTTGTGACAAAATAGA+CGG | 0.592212 | 5_4:+58378449 | Msa0859870:CDS |
| AAGCTCGAGTTTCTGATCAG+AGG | 0.594931 | 5_4:+58381234 | Msa0859870:CDS |
| CATGATGGAGCGAAGACCAA+GGG | 0.606131 | 5_4:-58378570 | None:intergenic |
| ACCATAGCAAAATTGAGAGG+TGG | 0.613290 | 5_4:-58378488 | None:intergenic |
| TCAACTAACAATCTCTACAA+AGG | 0.614256 | 5_4:+58378093 | Msa0859870:five_prime_UTR |
| ACCAAGAAACACAGATGTGT+AGG | 0.615442 | 5_4:+58378363 | Msa0859870:CDS |
| ACAAACATCAACTTCATCAA+CGG | 0.625540 | 5_4:-58378435 | None:intergenic |
| TGTAACTTCTGTTAAAATCG+CGG | 0.632489 | 5_4:-58379401 | None:intergenic |
| CATCCCAGAAGACACCATCC+GGG | 0.632592 | 5_4:+58380699 | Msa0859870:CDS |
| TTTGAAGAGAGGAAAGATTG+TGG | 0.652487 | 5_4:-58377975 | None:intergenic |
| ACATGATGGAGCGAAGACCA+AGG | 0.657297 | 5_4:-58378571 | None:intergenic |
| GCTTACAGTGAATTATAACT+GGG | 0.657845 | 5_4:-58380847 | None:intergenic |
| TACAGTGAATTATAACTGGG+TGG | 0.658923 | 5_4:-58380844 | None:intergenic |
| GTTATAATTCACTGTAAGCG+GGG | 0.660929 | 5_4:+58380851 | Msa0859870:CDS |
| TCAACCATAGCAAAATTGAG+AGG | 0.670609 | 5_4:-58378491 | None:intergenic |
| AAGGTTCAGGAAAACCAGAA+CGG | 0.690090 | 5_4:-58378526 | None:intergenic |
| TTGTGACAAAATAGACGGCG+AGG | 0.699028 | 5_4:+58378454 | Msa0859870:CDS |
| TTTGATATGCAACAACACGT+GGG | 0.736277 | 5_4:+58378305 | Msa0859870:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAAAACATAAATTAAAAA+TGG | - | chr5_4:58378902-58378921 | None:intergenic | 10.0% |
| !! | AATAAATTAAAAACATTGTT+TGG | + | chr5_4:58379546-58379565 | Msa0859870:intron | 10.0% |
| !! | TTACTAATAAATCATCAATT+GGG | - | chr5_4:58378694-58378713 | None:intergenic | 15.0% |
| !! | TTTACTAATAAATCATCAAT+TGG | - | chr5_4:58378695-58378714 | None:intergenic | 15.0% |
| !!! | ATATTGATTATTTGTTTGAT+GGG | + | chr5_4:58378734-58378753 | Msa0859870:intron | 15.0% |
| !! | TTTACGTTTAATTGATATAA+TGG | + | chr5_4:58378917-58378936 | Msa0859870:intron | 15.0% |
| !!! | GTTTTTTTGTGAATATTTAA+TGG | + | chr5_4:58379847-58379866 | Msa0859870:intron | 15.0% |
| !!! | TATTTTTGGATATTGAATTA+TGG | + | chr5_4:58380330-58380349 | Msa0859870:intron | 15.0% |
| !!! | TAGTTATATTTCCTAAATTT+TGG | + | chr5_4:58380434-58380453 | Msa0859870:intron | 15.0% |
| !!! | TCTAATCAATTATTTGTTAT+TGG | + | chr5_4:58380904-58380923 | Msa0859870:intron | 15.0% |
| !! | AAAAAAAAGTTATGCTAAAT+TGG | + | chr5_4:58381337-58381356 | Msa0859870:three_prime_UTR | 15.0% |
| !! | AAAAAAAGTTATGCTAAATT+GGG | + | chr5_4:58381338-58381357 | Msa0859870:three_prime_UTR | 15.0% |
| !!! | TACCTTTTGAATAATAAAAT+AGG | + | chr5_4:58381400-58381419 | Msa0859870:three_prime_UTR | 15.0% |
| !!! | TTCCTATTTTATTATTCAAA+AGG | - | chr5_4:58381405-58381424 | None:intergenic | 15.0% |
| !! | TTGAATAATAAAATAGGAAA+AGG | + | chr5_4:58381406-58381425 | Msa0859870:three_prime_UTR | 15.0% |
| !!! | CTTATCTTATTCTAAAAAAT+GGG | - | chr5_4:58381484-58381503 | None:intergenic | 15.0% |
| !!! | TCTTATCTTATTCTAAAAAA+TGG | - | chr5_4:58381485-58381504 | None:intergenic | 15.0% |
| !!! | ATTTTATTTTCTCTTTGTTT+TGG | + | chr5_4:58381555-58381574 | Msa0859870:three_prime_UTR | 15.0% |
| !! | ATTGTTAGTTGATTGATATT+TGG | - | chr5_4:58378085-58378104 | None:intergenic | 20.0% |
| !!! | GTTTTAAAATGTTACTCTTT+AGG | - | chr5_4:58378285-58378304 | None:intergenic | 20.0% |
| !! | ATATGTGTATATATACATGA+TGG | - | chr5_4:58378588-58378607 | None:intergenic | 20.0% |
| !!! | GATATTGATTATTTGTTTGA+TGG | + | chr5_4:58378733-58378752 | Msa0859870:intron | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+CGG | - | chr5_4:58378997-58379016 | None:intergenic | 20.0% |
| !! | ATTAATTACATGAATGCAAA+AGG | + | chr5_4:58379116-58379135 | Msa0859870:intron | 20.0% |
| !! | AATGTGTCAACTTTATATAA+TGG | + | chr5_4:58379514-58379533 | Msa0859870:intron | 20.0% |
| !!! | TATGTTATCATGTCATTTTT+TGG | + | chr5_4:58379620-58379639 | Msa0859870:intron | 20.0% |
| !! | ATTATAAAGTTAGTACACTT+TGG | - | chr5_4:58379745-58379764 | None:intergenic | 20.0% |
| !! | AGTGTACTAACTTTATAATA+TGG | + | chr5_4:58379746-58379765 | Msa0859870:intron | 20.0% |
| !!! | ATTATAATTTGAGATAACAC+TGG | - | chr5_4:58379815-58379834 | None:intergenic | 20.0% |
| !!! | GTTTTTGACAAATTCATAAT+GGG | - | chr5_4:58379914-58379933 | None:intergenic | 20.0% |
| !! | TTATGCTTATTGAACAAAAT+TGG | - | chr5_4:58379936-58379955 | None:intergenic | 20.0% |
| !!! | TCAACATTTTATATTGAAAC+CGG | + | chr5_4:58380094-58380113 | Msa0859870:intron | 20.0% |
| !! | TTTAGGAAATATAACTAAGT+TGG | - | chr5_4:58380431-58380450 | None:intergenic | 20.0% |
| !!! | TTATATTTCCTAAATTTTGG+AGG | + | chr5_4:58380437-58380456 | Msa0859870:intron | 20.0% |
| !!! | TATATTTCCTAAATTTTGGA+GGG | + | chr5_4:58380438-58380457 | Msa0859870:intron | 20.0% |
| !! | TTTACAAGAAAATACTCTTT+CGG | - | chr5_4:58381086-58381105 | None:intergenic | 20.0% |
| !! | TTCAAATATGAAAATGGTAT+AGG | - | chr5_4:58381299-58381318 | None:intergenic | 20.0% |
| !!! | TACCATTTTCATATTTGAAA+AGG | + | chr5_4:58381300-58381319 | Msa0859870:CDS | 20.0% |
| !!! | TACCTTTTCAAATATGAAAA+TGG | - | chr5_4:58381305-58381324 | None:intergenic | 20.0% |
| !! | CAAAGAGAAAATAAAATAGT+TGG | - | chr5_4:58381552-58381571 | None:intergenic | 20.0% |
| ! | TTAGTTGATTGATATTTGGA+GGG | - | chr5_4:58378081-58378100 | None:intergenic | 25.0% |
| ! | AGAGAAAGAAAATAGAGAAA+GGG | - | chr5_4:58378154-58378173 | None:intergenic | 25.0% |
| ! | AAGAGAAAGAAAATAGAGAA+AGG | - | chr5_4:58378155-58378174 | None:intergenic | 25.0% |
| !!! | AATTTTGCTATGGTTGATAA+TGG | + | chr5_4:58378497-58378516 | Msa0859870:CDS | 25.0% |
| ! | AATTTAGTGTAATTCTGTGT+CGG | + | chr5_4:58379020-58379039 | Msa0859870:intron | 25.0% |
| ! | AATTATCAATCTATGAAGCA+CGG | - | chr5_4:58379086-58379105 | None:intergenic | 25.0% |
| ! | TATAATTGAACAATGATCAC+TGG | + | chr5_4:58379159-58379178 | Msa0859870:intron | 25.0% |
| !! | TGCAATTATTTTCTTCAAGT+TGG | + | chr5_4:58379227-58379246 | Msa0859870:intron | 25.0% |
| !! | TACATAAGAAAGTACATGTT+TGG | - | chr5_4:58379485-58379504 | None:intergenic | 25.0% |
| ! | TTTGTGAATATTTAATGGCT+AGG | + | chr5_4:58379852-58379871 | Msa0859870:intron | 25.0% |
| !! | GGTTTTTGACAAATTCATAA+TGG | - | chr5_4:58379915-58379934 | None:intergenic | 25.0% |
| !! | GACTATTGTACTAGTTTATT+TGG | + | chr5_4:58380190-58380209 | Msa0859870:intron | 25.0% |
| !! | TGTACTAGTTTATTTGGAAA+TGG | + | chr5_4:58380196-58380215 | Msa0859870:intron | 25.0% |
| ! | AAGTTGGATATCATAATCAA+GGG | - | chr5_4:58380415-58380434 | None:intergenic | 25.0% |
| !! | TAAGTTGGATATCATAATCA+AGG | - | chr5_4:58380416-58380435 | None:intergenic | 25.0% |
| ! | TATGCAATTTATCAACTGTT+CGG | - | chr5_4:58380531-58380550 | None:intergenic | 25.0% |
| !! | TCTGATCTTATTTGAAATTG+TGG | + | chr5_4:58380656-58380675 | Msa0859870:intron | 25.0% |
| !! | TTATTTGAAATTGTGGATTC+AGG | + | chr5_4:58380663-58380682 | Msa0859870:intron | 25.0% |
| ! | ATTATTATTTAGATCGCCAA+AGG | - | chr5_4:58380810-58380829 | None:intergenic | 25.0% |
| !!! | TAGTCTTGATTTTTTTCTTG+AGG | + | chr5_4:58381622-58381641 | Msa0859870:three_prime_UTR | 25.0% |
| !! | CATTATTCTGACTTGATAAA+TGG | + | chr5_4:58381734-58381753 | Msa0859870:three_prime_UTR | 25.0% |
| ! | TATTTGTTTCCTTTGAAGAG+AGG | - | chr5_4:58377989-58378008 | None:intergenic | 30.0% |
| !!! | ATGGTCTTTTGTTTTGTGAA+AGG | - | chr5_4:58378025-58378044 | None:intergenic | 30.0% |
| AAAAAGAGAGAGAGTTTGAA+TGG | - | chr5_4:58378044-58378063 | None:intergenic | 30.0% | |
| GTTAGTTGATTGATATTTGG+AGG | - | chr5_4:58378082-58378101 | None:intergenic | 30.0% | |
| TCAACTAACAATCTCTACAA+AGG | + | chr5_4:58378093-58378112 | Msa0859870:five_prime_UTR | 30.0% | |
| AGAAAATAGAGAAAGGGAAA+GGG | - | chr5_4:58378148-58378167 | None:intergenic | 30.0% | |
| AAGAAAATAGAGAAAGGGAA+AGG | - | chr5_4:58378149-58378168 | None:intergenic | 30.0% | |
| TTGAAGTGTGTATGAATGTA+TGG | - | chr5_4:58378227-58378246 | None:intergenic | 30.0% | |
| ACAAACATCAACTTCATCAA+CGG | - | chr5_4:58378438-58378457 | None:intergenic | 30.0% | |
| GATGTTTGTGACAAAATAGA+CGG | + | chr5_4:58378449-58378468 | Msa0859870:CDS | 30.0% | |
| !!! | GTGTTTTTGAGATTTGTGAT+TGG | + | chr5_4:58378659-58378678 | Msa0859870:intron | 30.0% |
| !! | CTTTATCACTTTGGAATTGA+GGG | + | chr5_4:58378833-58378852 | Msa0859870:CDS | 30.0% |
| ATGAATGCAAAAGGTGATAA+AGG | + | chr5_4:58379125-58379144 | Msa0859870:intron | 30.0% | |
| !!! | ATTTTCTTCAAGTTGGTGTA+TGG | + | chr5_4:58379234-58379253 | Msa0859870:intron | 30.0% |
| CCATAGCAATTCATTTCAAT+AGG | - | chr5_4:58379284-58379303 | None:intergenic | 30.0% | |
| CCTATTGAAATGAATTGCTA+TGG | + | chr5_4:58379281-58379300 | Msa0859870:intron | 30.0% | |
| TTGAAATGAATTGCTATGGT+AGG | + | chr5_4:58379285-58379304 | Msa0859870:intron | 30.0% | |
| TGTAACTTCTGTTAAAATCG+CGG | - | chr5_4:58379404-58379423 | None:intergenic | 30.0% | |
| AAAGAAAACAGTATCCAATC+AGG | - | chr5_4:58379658-58379677 | None:intergenic | 30.0% | |
| AATATGGAATCACTGTTTGA+TGG | + | chr5_4:58379762-58379781 | Msa0859870:intron | 30.0% | |
| ! | TATTCTTGCTGTCTGTATAA+TGG | + | chr5_4:58379887-58379906 | Msa0859870:intron | 30.0% |
| ! | ATTCTTGCTGTCTGTATAAT+GGG | + | chr5_4:58379888-58379907 | Msa0859870:intron | 30.0% |
| ! | TTTTCCATCATGACAAAGAA+AGG | + | chr5_4:58379957-58379976 | Msa0859870:intron | 30.0% |
| TTTCCATCATGACAAAGAAA+GGG | + | chr5_4:58379958-58379977 | Msa0859870:intron | 30.0% | |
| GCAAACTATTAAGGAAAAAC+CGG | + | chr5_4:58380048-58380067 | Msa0859870:intron | 30.0% | |
| ! | AGTCTCTAACTTTTAACGAT+CGG | - | chr5_4:58380174-58380193 | None:intergenic | 30.0% |
| !! | CTATTCGATGAGCTTATTTT+TGG | + | chr5_4:58380316-58380335 | Msa0859870:intron | 30.0% |
| !! | TTGATTTTTCTTGTGTTGCT+TGG | - | chr5_4:58380376-58380395 | None:intergenic | 30.0% |
| GTTAAACAGAAATCAGAGAT+GGG | - | chr5_4:58380480-58380499 | None:intergenic | 30.0% | |
| AGTTAAACAGAAATCAGAGA+TGG | - | chr5_4:58380481-58380500 | None:intergenic | 30.0% | |
| ! | ATTTTGCACGTAATAACCTT+TGG | + | chr5_4:58380791-58380810 | Msa0859870:intron | 30.0% |
| GCTTACAGTGAATTATAACT+GGG | - | chr5_4:58380850-58380869 | None:intergenic | 30.0% | |
| CAGTTATAATTCACTGTAAG+CGG | + | chr5_4:58380849-58380868 | Msa0859870:CDS | 30.0% | |
| AGTTATAATTCACTGTAAGC+GGG | + | chr5_4:58380850-58380869 | Msa0859870:CDS | 30.0% | |
| ATAGTAAAAACCATCTTGTC+CGG | + | chr5_4:58380932-58380951 | Msa0859870:intron | 30.0% | |
| AGACATTGTCGACAAAAATA+TGG | - | chr5_4:58380964-58380983 | None:intergenic | 30.0% | |
| CTAATAGGGTTCTATTAGAT+AGG | + | chr5_4:58380996-58381015 | Msa0859870:intron | 30.0% | |
| GCTATAGAAAACTGCAAAAA+TGG | + | chr5_4:58381165-58381184 | Msa0859870:CDS | 30.0% | |
| TTATTCAAAAGGTAGAACCT+TGG | - | chr5_4:58381394-58381413 | None:intergenic | 30.0% | |
| TTTGAAGAGAGGAAAGATTG+TGG | - | chr5_4:58377978-58377997 | None:intergenic | 35.0% | |
| ACAATCTTTCCTCTCTTCAA+AGG | + | chr5_4:58377977-58377996 | Msa0859870:five_prime_UTR | 35.0% | |
| AAAATAGAGAAAGGGAAAGG+GGG | - | chr5_4:58378146-58378165 | None:intergenic | 35.0% | |
| GAAAATAGAGAAAGGGAAAG+GGG | - | chr5_4:58378147-58378166 | None:intergenic | 35.0% | |
| TTTGATATGCAACAACACGT+GGG | + | chr5_4:58378305-58378324 | Msa0859870:exon | 35.0% | |
| TCAACCATAGCAAAATTGAG+AGG | - | chr5_4:58378494-58378513 | None:intergenic | 35.0% | |
| TTGGAGTTTCTCAAGTCAAA+TGG | + | chr5_4:58378803-58378822 | Msa0859870:CDS | 35.0% | |
| TGGAGTTTCTCAAGTCAAAT+GGG | + | chr5_4:58378804-58378823 | Msa0859870:CDS | 35.0% | |
| !! | GCTTTATCACTTTGGAATTG+AGG | + | chr5_4:58378832-58378851 | Msa0859870:CDS | 35.0% |
| TCTCAAATTATTAGCGGTGT+TGG | - | chr5_4:58378991-58379010 | None:intergenic | 35.0% | |
| GATAAGAGAGACATGTCAAT+TGG | - | chr5_4:58379194-58379213 | None:intergenic | 35.0% | |
| ! | GTCTCTCTTATCATCTTTTG+TGG | + | chr5_4:58379202-58379221 | Msa0859870:intron | 35.0% |
| TTGCTATGGTAGGTTATATG+AGG | + | chr5_4:58379295-58379314 | Msa0859870:intron | 35.0% | |
| TGCTATGGTAGGTTATATGA+GGG | + | chr5_4:58379296-58379315 | Msa0859870:intron | 35.0% | |
| GTAGGTTATATGAGGGAAAA+GGG | + | chr5_4:58379303-58379322 | Msa0859870:intron | 35.0% | |
| TAGGTTATATGAGGGAAAAG+GGG | + | chr5_4:58379304-58379323 | Msa0859870:intron | 35.0% | |
| GGTCTATTATTGATCCTGAT+TGG | + | chr5_4:58379641-58379660 | Msa0859870:intron | 35.0% | |
| CTGTTTGATGGAATATAAGC+TGG | + | chr5_4:58379774-58379793 | Msa0859870:intron | 35.0% | |
| TTCCATCATGACAAAGAAAG+GGG | + | chr5_4:58379959-58379978 | Msa0859870:intron | 35.0% | |
| TCTAAATCATGATCAACCCT+AGG | + | chr5_4:58380013-58380032 | Msa0859870:intron | 35.0% | |
| ACCAAGAAGGCAAACTATTA+AGG | + | chr5_4:58380039-58380058 | Msa0859870:intron | 35.0% | |
| ! | TCCTTAATAGTTTGCCTTCT+TGG | - | chr5_4:58380043-58380062 | None:intergenic | 35.0% |
| ACGCTTCAAATCTAGTAAAC+CGG | - | chr5_4:58380116-58380135 | None:intergenic | 35.0% | |
| ! | AAATGGAACCCATGTGTTTT+TGG | + | chr5_4:58380213-58380232 | Msa0859870:intron | 35.0% |
| CTAATCCACCAAAAACACAT+GGG | - | chr5_4:58380224-58380243 | None:intergenic | 35.0% | |
| !!! | CATGTGTTTTTGGTGGATTA+GGG | + | chr5_4:58380223-58380242 | Msa0859870:intron | 35.0% |
| CTGAAAACCCTCCAAAATTT+AGG | - | chr5_4:58380448-58380467 | None:intergenic | 35.0% | |
| !! | TCTTCTGGGATGTTTACAAA+AGG | - | chr5_4:58380691-58380710 | None:intergenic | 35.0% |
| ! | GAAGCACTAAAAGTTCTTCT+TGG | + | chr5_4:58380721-58380740 | Msa0859870:CDS | 35.0% |
| TACAGTGAATTATAACTGGG+TGG | - | chr5_4:58380847-58380866 | None:intergenic | 35.0% | |
| CGCTTACAGTGAATTATAAC+TGG | - | chr5_4:58380851-58380870 | None:intergenic | 35.0% | |
| GTTATAATTCACTGTAAGCG+GGG | + | chr5_4:58380851-58380870 | Msa0859870:CDS | 35.0% | |
| TAGTAAAAACCATCTTGTCC+GGG | + | chr5_4:58380933-58380952 | Msa0859870:intron | 35.0% | |
| ! | GACAAAAATATGGCTTTTCC+CGG | - | chr5_4:58380954-58380973 | None:intergenic | 35.0% |
| ! | TCTCTGTGATTTGTGCTAAT+AGG | + | chr5_4:58380981-58381000 | Msa0859870:intron | 35.0% |
| ! | CTCTGTGATTTGTGCTAATA+GGG | + | chr5_4:58380982-58381001 | Msa0859870:intron | 35.0% |
| CACTTTCACAAGCTAAAGAA+AGG | - | chr5_4:58381368-58381387 | None:intergenic | 35.0% | |
| ACACTCATTGCTCATGAATA+AGG | - | chr5_4:58381598-58381617 | None:intergenic | 35.0% | |
| AAATAGAGAAAGGGAAAGGG+GGG | - | chr5_4:58378145-58378164 | None:intergenic | 40.0% | |
| CTTTGATATGCAACAACACG+TGG | + | chr5_4:58378304-58378323 | Msa0859870:exon | 40.0% | |
| ACCAAGAAACACAGATGTGT+AGG | + | chr5_4:58378363-58378382 | Msa0859870:CDS | 40.0% | |
| TCCTACACATCTGTGTTTCT+TGG | - | chr5_4:58378367-58378386 | None:intergenic | 40.0% | |
| !! | CAACGGTTGTAGTTTGTTTG+AGG | - | chr5_4:58378421-58378440 | None:intergenic | 40.0% |
| ! | TCCACCTCTCAATTTTGCTA+TGG | + | chr5_4:58378487-58378506 | Msa0859870:CDS | 40.0% |
| ACCATAGCAAAATTGAGAGG+TGG | - | chr5_4:58378491-58378510 | None:intergenic | 40.0% | |
| !! | GATAATGGCATTTTCCGTTC+TGG | + | chr5_4:58378512-58378531 | Msa0859870:CDS | 40.0% |
| AAGGTTCAGGAAAACCAGAA+CGG | - | chr5_4:58378529-58378548 | None:intergenic | 40.0% | |
| AAAGAGAAGTTGGAAGGTTC+AGG | - | chr5_4:58378542-58378561 | None:intergenic | 40.0% | |
| TGAAGGAAAGAGAAGTTGGA+AGG | - | chr5_4:58378548-58378567 | None:intergenic | 40.0% | |
| GGTTTGAAGGAAAGAGAAGT+TGG | - | chr5_4:58378552-58378571 | None:intergenic | 40.0% | |
| TTCTCTTTCCTTCAAACCCT+TGG | + | chr5_4:58378554-58378573 | Msa0859870:CDS | 40.0% | |
| TTAGCTTCTGGATATGGTTC+AGG | - | chr5_4:58378782-58378801 | None:intergenic | 40.0% | |
| ACCATATCCAGAAGCTAACT+TGG | + | chr5_4:58378784-58378803 | Msa0859870:CDS | 40.0% | |
| ! | TCCAAGTTAGCTTCTGGATA+TGG | - | chr5_4:58378788-58378807 | None:intergenic | 40.0% |
| ! | AGAAACTCCAAGTTAGCTTC+TGG | - | chr5_4:58378794-58378813 | None:intergenic | 40.0% |
| !! | CTTTGGAATTGAGGGTCATA+AGG | + | chr5_4:58378841-58378860 | Msa0859870:CDS | 40.0% |
| !! | CTTCAAGTTGGTGTATGGTA+TGG | + | chr5_4:58379239-58379258 | Msa0859870:intron | 40.0% |
| GGTAGGTTATATGAGGGAAA+AGG | + | chr5_4:58379302-58379321 | Msa0859870:intron | 40.0% | |
| CATACAGCTGAAGATCATAG+AGG | - | chr5_4:58379713-58379732 | None:intergenic | 40.0% | |
| TTCCCCTTTCTTTGTCATGA+TGG | - | chr5_4:58379964-58379983 | None:intergenic | 40.0% | |
| CATGACAAAGAAAGGGGAAA+AGG | + | chr5_4:58379965-58379984 | Msa0859870:intron | 40.0% | |
| CCTAATCCACCAAAAACACA+TGG | - | chr5_4:58380225-58380244 | None:intergenic | 40.0% | |
| !!! | CCATGTGTTTTTGGTGGATT+AGG | + | chr5_4:58380222-58380241 | Msa0859870:intron | 40.0% |
| ! | TGGAGGGTTTTCAGTACTTT+TGG | + | chr5_4:58380454-58380473 | Msa0859870:intron | 40.0% |
| ! | GAAGAACTTTTAGTGCTTCC+CGG | - | chr5_4:58380720-58380739 | None:intergenic | 40.0% |
| ! | GGTGCTGTAAACAACAAGAA+TGG | - | chr5_4:58381124-58381143 | None:intergenic | 40.0% |
| AGCTTGTGAAAGTGAATCCA+AGG | + | chr5_4:58381374-58381393 | Msa0859870:three_prime_UTR | 40.0% | |
| TTGTTGCTGCAATGCTTTGA+AGG | - | chr5_4:58381441-58381460 | None:intergenic | 40.0% | |
| !! | TCAAAGCATTGCAGCAACAA+AGG | + | chr5_4:58381441-58381460 | Msa0859870:three_prime_UTR | 40.0% |
| GATATTTGGAGGGAGAGAGT+GGG | - | chr5_4:58378071-58378090 | None:intergenic | 45.0% | |
| TGATATTTGGAGGGAGAGAG+TGG | - | chr5_4:58378072-58378091 | None:intergenic | 45.0% | |
| !!! | GGGAAGGTTTTGGGATCAAA+GGG | - | chr5_4:58378125-58378144 | None:intergenic | 45.0% |
| TTGTGACAAAATAGACGGCG+AGG | + | chr5_4:58378454-58378473 | Msa0859870:CDS | 45.0% | |
| GGGATCACGCTTTATCACTT+TGG | + | chr5_4:58378824-58378843 | Msa0859870:CDS | 45.0% | |
| GTCGTGTCTAGTGTATGTGT+CGG | - | chr5_4:58378953-58378972 | None:intergenic | 45.0% | |
| TATGAAGCACGGACACTCTT+TGG | - | chr5_4:58379075-58379094 | None:intergenic | 45.0% | |
| !! | CAAGTTGGTGTATGGTATGG+TGG | + | chr5_4:58379242-58379261 | Msa0859870:intron | 45.0% |
| !! | TGGTGTATGGTATGGTGGAT+TGG | + | chr5_4:58379247-58379266 | Msa0859870:intron | 45.0% |
| !! | TTGCCTTCTTGGTGTTCCTA+GGG | - | chr5_4:58380032-58380051 | None:intergenic | 45.0% |
| !! | TTTGCCTTCTTGGTGTTCCT+AGG | - | chr5_4:58380033-58380052 | None:intergenic | 45.0% |
| ATGTTGAATGCACGATCGAG+AGG | - | chr5_4:58380081-58380100 | None:intergenic | 45.0% | |
| !! | CTGAGTGTGTTGATTGACTG+TGG | + | chr5_4:58380143-58380162 | Msa0859870:intron | 45.0% |
| !!! | TGGAACCCATGTGTTTTTGG+TGG | + | chr5_4:58380216-58380235 | Msa0859870:intron | 45.0% |
| ! | AACTTTTAGTGCTTCCCGGA+TGG | - | chr5_4:58380716-58380735 | None:intergenic | 45.0% |
| AATTCACTGTAAGCGGGGAA+AGG | + | chr5_4:58380856-58380875 | Msa0859870:CDS | 45.0% | |
| ! | TGTTGTTTACAGCACCGAAC+AGG | + | chr5_4:58381128-58381147 | Msa0859870:intron | 45.0% |
| ATCCGACTAAACAGCCTGTT+CGG | - | chr5_4:58381145-58381164 | None:intergenic | 45.0% | |
| AAGCTCGAGTTTCTGATCAG+AGG | + | chr5_4:58381234-58381253 | Msa0859870:CDS | 45.0% | |
| !! | AATATATATTGAATTATTAT+AGG | + | chr5_4:58380251-58380270 | Msa0859870:intron | 5.0% |
| !!! | GGGGAAGGTTTTGGGATCAA+AGG | - | chr5_4:58378126-58378145 | None:intergenic | 50.0% |
| AGCGAAGACCAAGGGTTTGA+AGG | - | chr5_4:58378565-58378584 | None:intergenic | 50.0% | |
| ! | CATGATGGAGCGAAGACCAA+GGG | - | chr5_4:58378573-58378592 | None:intergenic | 50.0% |
| ! | ACATGATGGAGCGAAGACCA+AGG | - | chr5_4:58378574-58378593 | None:intergenic | 50.0% |
| !! | TATTAGCGGTGTTGGCGTGT+CGG | - | chr5_4:58378983-58379002 | None:intergenic | 50.0% |
| GGGAAAAGGGGTCATAAAGC+TGG | + | chr5_4:58379316-58379335 | Msa0859870:intron | 50.0% | |
| CAACCCTAGGAACACCAAGA+AGG | + | chr5_4:58380026-58380045 | Msa0859870:intron | 50.0% | |
| ACGATCGAGAGGCAAGTAAC+CGG | - | chr5_4:58380070-58380089 | None:intergenic | 50.0% | |
| ACATCCCAGAAGACACCATC+CGG | + | chr5_4:58380698-58380717 | Msa0859870:CDS | 50.0% | |
| ! | ATGGCTTTTCCCGGACAAGA+TGG | - | chr5_4:58380945-58380964 | None:intergenic | 50.0% |
| CACCGAACAGGCTGTTTAGT+CGG | + | chr5_4:58381140-58381159 | Msa0859870:CDS | 50.0% | |
| ! | GGGAAAGGGGGGAAGGTTTT+GGG | - | chr5_4:58378134-58378153 | None:intergenic | 55.0% |
| ! | AGGGAAAGGGGGGAAGGTTT+TGG | - | chr5_4:58378135-58378154 | None:intergenic | 55.0% |
| AGAGAAAGGGAAAGGGGGGA+AGG | - | chr5_4:58378141-58378160 | None:intergenic | 55.0% | |
| !! | TTCTGTGTCGGTGTCGTGTC+TGG | + | chr5_4:58379032-58379051 | Msa0859870:intron | 55.0% |
| CATCCCAGAAGACACCATCC+GGG | + | chr5_4:58380699-58380718 | Msa0859870:CDS | 55.0% | |
| CTTCCCGGATGGTGTCTTCT+GGG | - | chr5_4:58380705-58380724 | None:intergenic | 55.0% | |
| GCTTCCCGGATGGTGTCTTC+TGG | - | chr5_4:58380706-58380725 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 58377967 | 58381757 | 58377967 | ID=Msa0859870;Name=Msa0859870 |
| chr5_4 | mRNA | 58377967 | 58381757 | 58377967 | ID=Msa0859870-mRNA-1;Parent=Msa0859870;Name=Msa0859870-mRNA-1;_AED=0.08;_eAED=0.08;_QI=344|0.6|0.83|0.83|1|1|6|432|243 |
| chr5_4 | exon | 58377967 | 58378591 | 58377967 | ID=Msa0859870-mRNA-1:exon:17787;Parent=Msa0859870-mRNA-1 |
| chr5_4 | exon | 58378769 | 58378862 | 58378769 | ID=Msa0859870-mRNA-1:exon:17788;Parent=Msa0859870-mRNA-1 |
| chr5_4 | exon | 58379387 | 58379455 | 58379387 | ID=Msa0859870-mRNA-1:exon:17789;Parent=Msa0859870-mRNA-1 |
| chr5_4 | exon | 58380685 | 58380742 | 58380685 | ID=Msa0859870-mRNA-1:exon:17790;Parent=Msa0859870-mRNA-1 |
| chr5_4 | exon | 58380834 | 58380877 | 58380834 | ID=Msa0859870-mRNA-1:exon:17791;Parent=Msa0859870-mRNA-1 |
| chr5_4 | exon | 58381140 | 58381757 | 58381140 | ID=Msa0859870-mRNA-1:exon:17792;Parent=Msa0859870-mRNA-1 |
| chr5_4 | five_prime_UTR | 58377967 | 58378310 | 58377967 | ID=Msa0859870-mRNA-1:five_prime_utr;Parent=Msa0859870-mRNA-1 |
| chr5_4 | CDS | 58378311 | 58378591 | 58378311 | ID=Msa0859870-mRNA-1:cds;Parent=Msa0859870-mRNA-1 |
| chr5_4 | CDS | 58378769 | 58378862 | 58378769 | ID=Msa0859870-mRNA-1:cds;Parent=Msa0859870-mRNA-1 |
| chr5_4 | CDS | 58379387 | 58379455 | 58379387 | ID=Msa0859870-mRNA-1:cds;Parent=Msa0859870-mRNA-1 |
| chr5_4 | CDS | 58380685 | 58380742 | 58380685 | ID=Msa0859870-mRNA-1:cds;Parent=Msa0859870-mRNA-1 |
| chr5_4 | CDS | 58380834 | 58380877 | 58380834 | ID=Msa0859870-mRNA-1:cds;Parent=Msa0859870-mRNA-1 |
| chr5_4 | CDS | 58381140 | 58381325 | 58381140 | ID=Msa0859870-mRNA-1:cds;Parent=Msa0859870-mRNA-1 |
| chr5_4 | three_prime_UTR | 58381326 | 58381757 | 58381326 | ID=Msa0859870-mRNA-1:three_prime_utr;Parent=Msa0859870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
