Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781920 | XP_003616881.1 | 77.818 | 275 | 6 | 2 | 1 | 275 | 1 | 220 | 5.61e-148 | 423 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781920 | sp|Q9ZVN4|DSP1_ARATH | 53.788 | 264 | 65 | 4 | 9 | 271 | 4 | 211 | 8.49e-90 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781920 | G7KH96 | 77.818 | 275 | 6 | 2 | 1 | 275 | 1 | 220 | 2.68e-148 | 423 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0739230 | Msa0781920 | 0.880450 | 5.435191e-70 | -8.615850e-47 |
| Msa0781920 | Msa0819650 | 0.813901 | 2.024151e-51 | -8.615850e-47 |
| Msa0781920 | Msa0859870 | 0.891538 | 3.625143e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781920 | MtrunA17_Chr5g0438971 | 77.818 | 275 | 6 | 2 | 1 | 275 | 1 | 220 | 5.16e-152 | 423 |
| Msa0781920 | MtrunA17_Chr4g0075511 | 52.778 | 252 | 61 | 3 | 27 | 275 | 1 | 197 | 3.47e-87 | 258 |
| Msa0781920 | MtrunA17_Chr7g0249271 | 45.909 | 220 | 64 | 2 | 46 | 265 | 5 | 169 | 1.77e-63 | 198 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781920 | AT1G05000.1 | 53.788 | 264 | 65 | 4 | 9 | 271 | 4 | 211 | 8.63e-91 | 268 |
| Msa0781920 | AT1G05000.2 | 52.536 | 276 | 82 | 5 | 9 | 271 | 4 | 243 | 9.24e-91 | 269 |
| Msa0781920 | AT4G03960.1 | 57.658 | 222 | 39 | 2 | 54 | 275 | 25 | 191 | 1.98e-85 | 254 |
| Msa0781920 | AT2G32960.1 | 48.571 | 280 | 95 | 5 | 12 | 275 | 11 | 257 | 7.87e-85 | 254 |
| Msa0781920 | AT3G02800.1 | 47.926 | 217 | 58 | 2 | 56 | 272 | 13 | 174 | 1.19e-65 | 204 |
| Msa0781920 | AT5G16480.1 | 47.706 | 218 | 58 | 3 | 48 | 265 | 5 | 166 | 1.94e-61 | 193 |
| Msa0781920 | AT1G05000.3 | 57.627 | 118 | 48 | 2 | 9 | 125 | 4 | 120 | 1.33e-39 | 136 |
| Msa0781920 | AT5G16480.2 | 68.421 | 76 | 23 | 1 | 48 | 123 | 5 | 79 | 2.97e-28 | 104 |
Find 73 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTACACATCTGTGTTTCT+TGG | 0.204782 | 5_2:-64632453 | None:intergenic |
| GCTTCCCGGATGGTGTCTTC+TGG | 0.213799 | 5_2:-64634828 | None:intergenic |
| TCCAAGTTAGCTTCTGGATA+TGG | 0.250782 | 5_2:-64632856 | None:intergenic |
| ATTGTTAGTTGATTGATATT+TGG | 0.296635 | 5_2:-64632162 | None:intergenic |
| AAAGAGAAGTTGGAAGGTTC+AGG | 0.317727 | 5_2:-64632628 | None:intergenic |
| ACACTCATTGCTCATGAATA+AGG | 0.322193 | 5_2:-64635721 | None:intergenic |
| CGCTTACAGTGAATTATAAC+TGG | 0.335487 | 5_2:-64634978 | None:intergenic |
| TTGTTGCTGCAATGCCTTGA+AGG | 0.342205 | 5_2:-64635562 | None:intergenic |
| GAAAATAGAGAAAGGGAAAG+GGG | 0.355365 | 5_2:-64632225 | None:intergenic |
| AGAAACTCCAAGTTAGCTTC+TGG | 0.360302 | 5_2:-64632862 | None:intergenic |
| TTCAAATATGAAAATGGTAT+AGG | 0.362929 | 5_2:-64635429 | None:intergenic |
| TTAGCTTCTGGATATGGTTC+AGG | 0.367111 | 5_2:-64632850 | None:intergenic |
| TTCTCTTTCCTTCAAACCCT+TGG | 0.368110 | 5_2:+64632643 | Msa0781920:CDS |
| GAAGAACTTTCAGCGCTTCC+CGG | 0.383873 | 5_2:-64634842 | None:intergenic |
| TTGGAGTTTCTCAAGTCAAA+TGG | 0.388214 | 5_2:+64632874 | Msa0781920:CDS |
| CTTTGGAATTGAGGGTCATA+AGG | 0.396133 | 5_2:+64632912 | Msa0781920:CDS |
| CTTCCCGGATGGTGTCTTCT+GGG | 0.396806 | 5_2:-64634827 | None:intergenic |
| GGTTTGAAGGAAAGAGAAGT+TGG | 0.397482 | 5_2:-64632638 | None:intergenic |
| GAAGCGCTGAAAGTTCTTCT+TGG | 0.399425 | 5_2:+64634846 | Msa0781920:CDS |
| AGAAAATAGAGAAAGGGAAA+GGG | 0.403951 | 5_2:-64632226 | None:intergenic |
| CTTTATCACTTTGGAATTGA+GGG | 0.406445 | 5_2:+64632904 | Msa0781920:CDS |
| GGGATCAAGCTTTATCACTT+TGG | 0.406526 | 5_2:+64632895 | Msa0781920:CDS |
| ACCATATCCAGAAGCTAACT+TGG | 0.415247 | 5_2:+64632855 | Msa0781920:CDS |
| AGAGAAAGAGAGAGTTTGAA+TGG | 0.415388 | 5_2:-64632123 | None:intergenic |
| GCTTTATCACTTTGGAATTG+AGG | 0.419386 | 5_2:+64632903 | Msa0781920:CDS |
| TGATATTTGGAGGGAGAGAG+TGG | 0.426980 | 5_2:-64632149 | None:intergenic |
| CAAAGAGAAAATAAAATAGT+TGG | 0.429666 | 5_2:-64635675 | None:intergenic |
| TTGAATAATAAAATAGGAAA+AGG | 0.434491 | 5_2:+64635530 | Msa0781920:three_prime_UTR |
| AAGAGAAAGAAAATAGAGAA+AGG | 0.448432 | 5_2:-64632233 | None:intergenic |
| AGAGAAAGAAAATAGAGAAA+GGG | 0.450418 | 5_2:-64632232 | None:intergenic |
| TGTTGTTTACAGCACCGAAC+AGG | 0.463983 | 5_2:+64635261 | Msa0781920:intron |
| CCTTGGATTCACTTAAAGAA+AGG | 0.467145 | 5_2:-64635498 | None:intergenic |
| AAGAAAATAGAGAAAGGGAA+AGG | 0.474648 | 5_2:-64632227 | None:intergenic |
| ATCCGACTAAACAGCCTGTT+CGG | 0.476274 | 5_2:-64635275 | None:intergenic |
| GTTAGTTGATTGATATTTGG+AGG | 0.483903 | 5_2:-64632159 | None:intergenic |
| TGGAGTTTCTCAAGTCAAAT+GGG | 0.484217 | 5_2:+64632875 | Msa0781920:CDS |
| AAAATAGAGAAAGGGAAAGG+GGG | 0.490562 | 5_2:-64632224 | None:intergenic |
| ACATCCCAGAAGACACCATC+CGG | 0.490587 | 5_2:+64634823 | Msa0781920:CDS |
| AGCGAAGACCAAGGGTTTGA+AGG | 0.493469 | 5_2:-64632651 | None:intergenic |
| AAAGGTGATGAACTCCTTCA+AGG | 0.504073 | 5_2:+64635548 | Msa0781920:three_prime_UTR |
| AAATAGAGAAAGGGAAAGGG+GGG | 0.505444 | 5_2:-64632223 | None:intergenic |
| CCTTTCTTTAAGTGAATCCA+AGG | 0.517954 | 5_2:+64635498 | Msa0781920:three_prime_UTR |
| ACACTCTTTCCTCTCTTCAA+AGG | 0.523615 | 5_2:+64632059 | Msa0781920:five_prime_UTR |
| TCTTCTGGGATGTTTACAAA+AGG | 0.529846 | 5_2:-64634813 | None:intergenic |
| TGAAGGAAAGAGAAGTTGGA+AGG | 0.530380 | 5_2:-64632634 | None:intergenic |
| CTTTGATATGCAACAACACG+TGG | 0.530657 | 5_2:+64632393 | Msa0781920:exon |
| AGTGTGTGTATGAATGTGTA+TGG | 0.531491 | 5_2:-64632305 | None:intergenic |
| GATATTTGGAGGGAGAGAGT+GGG | 0.538600 | 5_2:-64632148 | None:intergenic |
| AACTTTCAGCGCTTCCCGGA+TGG | 0.541040 | 5_2:-64634838 | None:intergenic |
| TACAGTGAATTATAACTGGA+TGG | 0.544806 | 5_2:-64634974 | None:intergenic |
| TTATTCAAAAGGTAGAACCT+TGG | 0.557698 | 5_2:-64635515 | None:intergenic |
| TTAGTTGATTGATATTTGGA+GGG | 0.558371 | 5_2:-64632158 | None:intergenic |
| CACCGAACAGGCTGTTTAGT+CGG | 0.558896 | 5_2:+64635273 | Msa0781920:CDS |
| TCAAGGCATTGCAGCAACAA+AGG | 0.568583 | 5_2:+64635565 | Msa0781920:three_prime_UTR |
| ATTATTATTTAGATCGCCAA+AGG | 0.576179 | 5_2:-64634937 | None:intergenic |
| TATTTGTTTCCTTTGAAGAG+AGG | 0.576979 | 5_2:-64632068 | None:intergenic |
| GATGTTTGTGACAAAATAGA+CGG | 0.592212 | 5_2:+64632538 | Msa0781920:CDS |
| TCAACTAACAATCTCTGCAA+AGG | 0.595625 | 5_2:+64632173 | Msa0781920:five_prime_UTR |
| AAGCTCGAGTTTCAGATCAG+AGG | 0.597414 | 5_2:+64635367 | Msa0781920:CDS |
| CATGATGGAGCGAAGACCAA+GGG | 0.606131 | 5_2:-64632659 | None:intergenic |
| ACCATAGCAAAATTGAGAGG+TGG | 0.613290 | 5_2:-64632577 | None:intergenic |
| ACCAAGAAACACAGATGTGT+AGG | 0.615442 | 5_2:+64632452 | Msa0781920:CDS |
| AATTCACTGTAAGCGCGGAA+AGG | 0.621850 | 5_2:+64634986 | Msa0781920:CDS |
| ACAAACATCAACTTCATCAA+CGG | 0.625540 | 5_2:-64632524 | None:intergenic |
| TGTAACTTCTGTTAAAATCG+CGG | 0.632489 | 5_2:-64633507 | None:intergenic |
| CATCCCAGAAGACACCATCC+GGG | 0.632592 | 5_2:+64634824 | Msa0781920:CDS |
| GTTATAATTCACTGTAAGCG+CGG | 0.656341 | 5_2:+64634981 | Msa0781920:CDS |
| ACATGATGGAGCGAAGACCA+AGG | 0.657297 | 5_2:-64632660 | None:intergenic |
| TTTGAAGAGAGGAAAGAGTG+TGG | 0.668535 | 5_2:-64632057 | None:intergenic |
| TCAACCATAGCAAAATTGAG+AGG | 0.670609 | 5_2:-64632580 | None:intergenic |
| AAGGTTCAGGAAAACCAGAA+CGG | 0.690090 | 5_2:-64632615 | None:intergenic |
| TTGTGACAAAATAGACGGCG+AGG | 0.699028 | 5_2:+64632543 | Msa0781920:CDS |
| TTTGATATGCAACAACACGT+GGG | 0.736277 | 5_2:+64632394 | Msa0781920:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACTAATAAATAATCAATT+GGG | - | chr5_2:64632765-64632784 | None:intergenic | 10.0% |
| !! | TTTACTAATAAATAATCAAT+TGG | - | chr5_2:64632766-64632785 | None:intergenic | 10.0% |
| !! | GTAAAAACATAAATTAAAAA+TGG | - | chr5_2:64632973-64632992 | None:intergenic | 10.0% |
| !!! | TATCTTATTTTCTAAAAAAT+GGG | - | chr5_2:64635608-64635627 | None:intergenic | 10.0% |
| !!! | TTATCTTATTTTCTAAAAAA+TGG | - | chr5_2:64635609-64635628 | None:intergenic | 10.0% |
| !!! | AGTTTAAATTTTTACTCTTT+AGG | - | chr5_2:64632375-64632394 | None:intergenic | 15.0% |
| !! | ATATAGATATATATACATGA+TGG | - | chr5_2:64632677-64632696 | None:intergenic | 15.0% |
| !!! | ATATTGATTATTTGTTTGAT+GGG | + | chr5_2:64632805-64632824 | Msa0781920:intron | 15.0% |
| !! | TTTACGTTTAATTGATATAA+TGG | + | chr5_2:64632988-64633007 | Msa0781920:intron | 15.0% |
| !!! | TGTTTTTTGTGAATATTTAA+TGG | + | chr5_2:64633951-64633970 | Msa0781920:intron | 15.0% |
| !! | TTTCAATATAAAATGTTGAA+CGG | - | chr5_2:64634228-64634247 | None:intergenic | 15.0% |
| !!! | TATTTTTGGATATTTAACTA+TGG | + | chr5_2:64634465-64634484 | Msa0781920:intron | 15.0% |
| !! | AAAAAAAAGTTATGCTAAAT+TGG | + | chr5_2:64635470-64635489 | Msa0781920:three_prime_UTR | 15.0% |
| !! | AAAAAAAGTTATGCTAAATT+GGG | + | chr5_2:64635471-64635490 | Msa0781920:three_prime_UTR | 15.0% |
| !!! | TACCTTTTGAATAATAAAAT+AGG | + | chr5_2:64635524-64635543 | Msa0781920:three_prime_UTR | 15.0% |
| !!! | TTCCTATTTTATTATTCAAA+AGG | - | chr5_2:64635529-64635548 | None:intergenic | 15.0% |
| !! | TTGAATAATAAAATAGGAAA+AGG | + | chr5_2:64635530-64635549 | Msa0781920:three_prime_UTR | 15.0% |
| !!! | ATTTTATTTTCTCTTTGTTT+TGG | + | chr5_2:64635681-64635700 | Msa0781920:three_prime_UTR | 15.0% |
| !! | ATTGTTAGTTGATTGATATT+TGG | - | chr5_2:64632165-64632184 | None:intergenic | 20.0% |
| !!! | GATATTGATTATTTGTTTGA+TGG | + | chr5_2:64632804-64632823 | Msa0781920:intron | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+CGG | - | chr5_2:64633068-64633087 | None:intergenic | 20.0% |
| !! | AATTATCAATCTATAAAGCA+CGG | - | chr5_2:64633157-64633176 | None:intergenic | 20.0% |
| !! | ATTAATTACATGAATGCAAA+AGG | + | chr5_2:64633187-64633206 | Msa0781920:intron | 20.0% |
| !! | AAACACTACAATTCATATAA+TGG | - | chr5_2:64633370-64633389 | None:intergenic | 20.0% |
| !!! | TATGATATCATGTCATTTTT+TGG | + | chr5_2:64633725-64633744 | Msa0781920:intron | 20.0% |
| !! | ATTATAAAGTTAGTACACTT+TGG | - | chr5_2:64633850-64633869 | None:intergenic | 20.0% |
| !! | AGTGTACTAACTTTATAATA+TGG | + | chr5_2:64633851-64633870 | Msa0781920:intron | 20.0% |
| !!! | GTTTTTGACAAATTCATAAT+GGG | - | chr5_2:64634018-64634037 | None:intergenic | 20.0% |
| !! | TTATGCTTATTGAACAAAAT+CGG | - | chr5_2:64634040-64634059 | None:intergenic | 20.0% |
| !!! | TCAACATTTTATATTGAAAC+CGG | + | chr5_2:64634229-64634248 | Msa0781920:intron | 20.0% |
| !!! | TAGCTTTATTTCCTAAATTT+TGG | + | chr5_2:64634569-64634588 | Msa0781920:intron | 20.0% |
| !! | TGAAAACAATTCCAAAATTT+AGG | - | chr5_2:64634583-64634602 | None:intergenic | 20.0% |
| !! | GTTAAACAAAAATCATAGAT+GGG | - | chr5_2:64634616-64634635 | None:intergenic | 20.0% |
| !! | AGTTAAACAAAAATCATAGA+TGG | - | chr5_2:64634617-64634636 | None:intergenic | 20.0% |
| !! | CTATTCCTATATTTAATGAT+TGG | - | chr5_2:64635040-64635059 | None:intergenic | 20.0% |
| !! | TTTACAAGAAAATACTCTTT+CGG | - | chr5_2:64635219-64635238 | None:intergenic | 20.0% |
| !! | TTCAAATATGAAAATGGTAT+AGG | - | chr5_2:64635432-64635451 | None:intergenic | 20.0% |
| !!! | TACCATTTTCATATTTGAAA+AGG | + | chr5_2:64635433-64635452 | Msa0781920:CDS | 20.0% |
| !!! | TACCTTTTCAAATATGAAAA+TGG | - | chr5_2:64635438-64635457 | None:intergenic | 20.0% |
| !! | CAAAGAGAAAATAAAATAGT+TGG | - | chr5_2:64635678-64635697 | None:intergenic | 20.0% |
| !!! | CATTATTTTGACTTGATAAA+TGG | + | chr5_2:64635861-64635880 | Msa0781920:three_prime_UTR | 20.0% |
| ! | TTAGTTGATTGATATTTGGA+GGG | - | chr5_2:64632161-64632180 | None:intergenic | 25.0% |
| ! | AGAGAAAGAAAATAGAGAAA+GGG | - | chr5_2:64632235-64632254 | None:intergenic | 25.0% |
| ! | AAGAGAAAGAAAATAGAGAA+AGG | - | chr5_2:64632236-64632255 | None:intergenic | 25.0% |
| !!! | AATTTTGCTATGGTTGATAA+TGG | + | chr5_2:64632586-64632605 | Msa0781920:CDS | 25.0% |
| ! | AATTTAGTGTAATTCTGTGT+CGG | + | chr5_2:64633091-64633110 | Msa0781920:intron | 25.0% |
| ! | TATAATTGAACAATGATCAC+TGG | + | chr5_2:64633230-64633249 | Msa0781920:intron | 25.0% |
| !! | TGCAATTATTTTCTTCAAGT+TGG | + | chr5_2:64633298-64633317 | Msa0781920:intron | 25.0% |
| !! | TAATTTGTGACCTATTGAAA+TGG | + | chr5_2:64633342-64633361 | Msa0781920:intron | 25.0% |
| ! | AATTTGTGACCTATTGAAAT+GGG | + | chr5_2:64633343-64633362 | Msa0781920:intron | 25.0% |
| !! | TACATAAGAAAGTACATGTT+TGG | - | chr5_2:64633591-64633610 | None:intergenic | 25.0% |
| ! | ATTATAAATTGAGATAACCC+TGG | - | chr5_2:64633920-64633939 | None:intergenic | 25.0% |
| ! | TTTGTGAATATTTAATGGCT+AGG | + | chr5_2:64633956-64633975 | Msa0781920:intron | 25.0% |
| !! | GGTTTTTGACAAATTCATAA+TGG | - | chr5_2:64634019-64634038 | None:intergenic | 25.0% |
| ! | GAAAAACATAGTTCAAAAGA+TGG | + | chr5_2:64634166-64634185 | Msa0781920:intron | 25.0% |
| !! | ATTCTCTAACTTTTATCGAT+CGG | - | chr5_2:64634309-64634328 | None:intergenic | 25.0% |
| ! | AATATCCAAAAATAAGCTCA+TGG | - | chr5_2:64634459-64634478 | None:intergenic | 25.0% |
| ! | AAGTTGGATATCATAATCAA+GGG | - | chr5_2:64634550-64634569 | None:intergenic | 25.0% |
| !! | TAAGTTGGATATCATAATCA+AGG | - | chr5_2:64634551-64634570 | None:intergenic | 25.0% |
| ! | TTTAGGAAATAAAGCTAAGT+TGG | - | chr5_2:64634566-64634585 | None:intergenic | 25.0% |
| ! | TAAGCAATTTATCAACTGTT+GGG | - | chr5_2:64634667-64634686 | None:intergenic | 25.0% |
| ! | ATAAGCAATTTATCAACTGT+TGG | - | chr5_2:64634668-64634687 | None:intergenic | 25.0% |
| ! | TATCTAATCTCATGAAATTG+TGG | + | chr5_2:64634781-64634800 | Msa0781920:intron | 25.0% |
| !! | ATTTTGCAAGTAATAACCTT+TGG | + | chr5_2:64634921-64634940 | Msa0781920:CDS | 25.0% |
| ! | ATTATTATTTAGATCGCCAA+AGG | - | chr5_2:64634940-64634959 | None:intergenic | 25.0% |
| ! | ACTCACCAATCATTAAATAT+AGG | + | chr5_2:64635032-64635051 | Msa0781920:intron | 25.0% |
| ! | TAATAGGGTTCTATTAGATA+GGG | + | chr5_2:64635130-64635149 | Msa0781920:intron | 25.0% |
| !!! | TAGTCTTGATTTTTTTCTTG+AGG | + | chr5_2:64635748-64635767 | Msa0781920:three_prime_UTR | 25.0% |
| ! | TATTTGTTTCCTTTGAAGAG+AGG | - | chr5_2:64632071-64632090 | None:intergenic | 30.0% |
| !!! | ATGGTCTTTTGTTTTGTGAA+AGG | - | chr5_2:64632107-64632126 | None:intergenic | 30.0% |
| GTTAGTTGATTGATATTTGG+AGG | - | chr5_2:64632162-64632181 | None:intergenic | 30.0% | |
| AGAAAATAGAGAAAGGGAAA+GGG | - | chr5_2:64632229-64632248 | None:intergenic | 30.0% | |
| AAGAAAATAGAGAAAGGGAA+AGG | - | chr5_2:64632230-64632249 | None:intergenic | 30.0% | |
| !! | CTTGGTTCTTTTTCTTATGT+TGG | - | chr5_2:64632438-64632457 | None:intergenic | 30.0% |
| ACAAACATCAACTTCATCAA+CGG | - | chr5_2:64632527-64632546 | None:intergenic | 30.0% | |
| GATGTTTGTGACAAAATAGA+CGG | + | chr5_2:64632538-64632557 | Msa0781920:CDS | 30.0% | |
| !!! | GTGTTTTTGAGTTTTGAGAT+TGG | + | chr5_2:64632730-64632749 | Msa0781920:intron | 30.0% |
| !! | CTTTATCACTTTGGAATTGA+GGG | + | chr5_2:64632904-64632923 | Msa0781920:CDS | 30.0% |
| ATGAATGCAAAAGGTGATAA+AGG | + | chr5_2:64633196-64633215 | Msa0781920:intron | 30.0% | |
| !!! | ATTTTCTTCAAGTTGGTGTA+TGG | + | chr5_2:64633305-64633324 | Msa0781920:intron | 30.0% |
| TATAATGGTCCCATTTCAAT+AGG | - | chr5_2:64633355-64633374 | None:intergenic | 30.0% | |
| TTTAAGCCAATGAATTGCTA+TGG | + | chr5_2:64633387-64633406 | Msa0781920:intron | 30.0% | |
| TGTAACTTCTGTTAAAATCG+CGG | - | chr5_2:64633510-64633529 | None:intergenic | 30.0% | |
| GGTCTATTATTGATCTTGAT+TGG | + | chr5_2:64633746-64633765 | Msa0781920:intron | 30.0% | |
| AATATGGAATCACTGTTTGA+TGG | + | chr5_2:64633867-64633886 | Msa0781920:intron | 30.0% | |
| ! | TATTCTTGCTGTCTGTATAA+TGG | + | chr5_2:64633991-64634010 | Msa0781920:intron | 30.0% |
| ! | ATTCTTGCTGTCTGTATAAT+GGG | + | chr5_2:64633992-64634011 | Msa0781920:intron | 30.0% |
| TTTCCATCATTGACAAAGAA+AGG | + | chr5_2:64634062-64634081 | Msa0781920:intron | 30.0% | |
| TTCCATCATTGACAAAGAAA+GGG | + | chr5_2:64634063-64634082 | Msa0781920:intron | 30.0% | |
| ! | CATAGTTCAAAAGATGGATT+TGG | + | chr5_2:64634172-64634191 | Msa0781920:intron | 30.0% |
| ACACTTCAAATCTAGTAAAC+CGG | - | chr5_2:64634251-64634270 | None:intergenic | 30.0% | |
| ! | TGCACTAGTTTATTGAGAAA+TGG | + | chr5_2:64634331-64634350 | Msa0781920:intron | 30.0% |
| !! | CTATTCCATGAGCTTATTTT+TGG | + | chr5_2:64634451-64634470 | Msa0781920:intron | 30.0% |
| AATACTTCTTCTATATGCCA+AGG | + | chr5_2:64634491-64634510 | Msa0781920:intron | 30.0% | |
| ! | GGAATTGTTTTCAGTACTTT+TGG | + | chr5_2:64634590-64634609 | Msa0781920:intron | 30.0% |
| TACAGTGAATTATAACTGGA+TGG | - | chr5_2:64634977-64634996 | None:intergenic | 30.0% | |
| AGACATTGTTGGGAAAAATA+TGG | - | chr5_2:64635092-64635111 | None:intergenic | 30.0% | |
| CACAGATTAAAGACATTGTT+GGG | - | chr5_2:64635102-64635121 | None:intergenic | 30.0% | |
| TCACAGATTAAAGACATTGT+TGG | - | chr5_2:64635103-64635122 | None:intergenic | 30.0% | |
| AATCTGTGATTTGAGCTAAT+AGG | + | chr5_2:64635114-64635133 | Msa0781920:intron | 30.0% | |
| ATCTGTGATTTGAGCTAATA+GGG | + | chr5_2:64635115-64635134 | Msa0781920:intron | 30.0% | |
| CTAATAGGGTTCTATTAGAT+AGG | + | chr5_2:64635129-64635148 | Msa0781920:intron | 30.0% | |
| GCTATAGAAAACTGCAAAAA+TGG | + | chr5_2:64635298-64635317 | Msa0781920:CDS | 30.0% | |
| TTATTCAAAAGGTAGAACCT+TGG | - | chr5_2:64635518-64635537 | None:intergenic | 30.0% | |
| !!! | CTTTTGTTTTGTGAAAGGAG+AGG | - | chr5_2:64632102-64632121 | None:intergenic | 35.0% |
| AGAGAAAGAGAGAGTTTGAA+TGG | - | chr5_2:64632126-64632145 | None:intergenic | 35.0% | |
| TCAACTAACAATCTCTGCAA+AGG | + | chr5_2:64632173-64632192 | Msa0781920:five_prime_UTR | 35.0% | |
| AAAATAGAGAAAGGGAAAGG+GGG | - | chr5_2:64632227-64632246 | None:intergenic | 35.0% | |
| GAAAATAGAGAAAGGGAAAG+GGG | - | chr5_2:64632228-64632247 | None:intergenic | 35.0% | |
| AGTGTGTGTATGAATGTGTA+TGG | - | chr5_2:64632308-64632327 | None:intergenic | 35.0% | |
| TTTGATATGCAACAACACGT+GGG | + | chr5_2:64632394-64632413 | Msa0781920:exon | 35.0% | |
| TCAACCATAGCAAAATTGAG+AGG | - | chr5_2:64632583-64632602 | None:intergenic | 35.0% | |
| TTGGAGTTTCTCAAGTCAAA+TGG | + | chr5_2:64632874-64632893 | Msa0781920:CDS | 35.0% | |
| TGGAGTTTCTCAAGTCAAAT+GGG | + | chr5_2:64632875-64632894 | Msa0781920:CDS | 35.0% | |
| !! | GCTTTATCACTTTGGAATTG+AGG | + | chr5_2:64632903-64632922 | Msa0781920:CDS | 35.0% |
| TCTCAAATTATTAGCGGTGT+TGG | - | chr5_2:64633062-64633081 | None:intergenic | 35.0% | |
| GATAAGAGAGACATGTCAAT+TGG | - | chr5_2:64633265-64633284 | None:intergenic | 35.0% | |
| ! | GTCTCTCTTATCATCTTTTG+TGG | + | chr5_2:64633273-64633292 | Msa0781920:intron | 35.0% |
| AACCTACCATAGCAATTCAT+TGG | - | chr5_2:64633396-64633415 | None:intergenic | 35.0% | |
| TTGCTATGGTAGGTTATATG+AGG | + | chr5_2:64633401-64633420 | Msa0781920:intron | 35.0% | |
| TGCTATGGTAGGTTATATGA+GGG | + | chr5_2:64633402-64633421 | Msa0781920:intron | 35.0% | |
| GTAGGTTATATGAGGGAAAA+GGG | + | chr5_2:64633409-64633428 | Msa0781920:intron | 35.0% | |
| TAGGTTATATGAGGGAAAAG+GGG | + | chr5_2:64633410-64633429 | Msa0781920:intron | 35.0% | |
| TCCATCATTGACAAAGAAAG+GGG | + | chr5_2:64634064-64634083 | Msa0781920:intron | 35.0% | |
| ! | AAATGGATCCCATGTGTTTT+TGG | + | chr5_2:64634348-64634367 | Msa0781920:intron | 35.0% |
| CTAATCCACCAAAAACACAT+GGG | - | chr5_2:64634359-64634378 | None:intergenic | 35.0% | |
| !!! | CATGTGTTTTTGGTGGATTA+GGG | + | chr5_2:64634358-64634377 | Msa0781920:intron | 35.0% |
| AGGGTGACTTAATGAAAGTA+TGG | - | chr5_2:64634531-64634550 | None:intergenic | 35.0% | |
| TCTCATGAAATTGTGGATTC+AGG | + | chr5_2:64634788-64634807 | Msa0781920:intron | 35.0% | |
| !! | TCTTCTGGGATGTTTACAAA+AGG | - | chr5_2:64634816-64634835 | None:intergenic | 35.0% |
| CGCTTACAGTGAATTATAAC+TGG | - | chr5_2:64634981-64635000 | None:intergenic | 35.0% | |
| GTTATAATTCACTGTAAGCG+CGG | + | chr5_2:64634981-64635000 | Msa0781920:CDS | 35.0% | |
| ATAGTTACAACCATCTCGTT+TGG | + | chr5_2:64635060-64635079 | Msa0781920:intron | 35.0% | |
| ! | ATGGATTTTTCCAAACGAGA+TGG | - | chr5_2:64635073-64635092 | None:intergenic | 35.0% |
| CCTTGGATTCACTTAAAGAA+AGG | - | chr5_2:64635501-64635520 | None:intergenic | 35.0% | |
| CCTTTCTTTAAGTGAATCCA+AGG | + | chr5_2:64635498-64635517 | Msa0781920:three_prime_UTR | 35.0% | |
| ACACTCATTGCTCATGAATA+AGG | - | chr5_2:64635724-64635743 | None:intergenic | 35.0% | |
| TTTGAAGAGAGGAAAGAGTG+TGG | - | chr5_2:64632060-64632079 | None:intergenic | 40.0% | |
| ACACTCTTTCCTCTCTTCAA+AGG | + | chr5_2:64632059-64632078 | Msa0781920:five_prime_UTR | 40.0% | |
| AAATAGAGAAAGGGAAAGGG+GGG | - | chr5_2:64632226-64632245 | None:intergenic | 40.0% | |
| CTTTGATATGCAACAACACG+TGG | + | chr5_2:64632393-64632412 | Msa0781920:exon | 40.0% | |
| ACCAAGAAACACAGATGTGT+AGG | + | chr5_2:64632452-64632471 | Msa0781920:CDS | 40.0% | |
| TCCTACACATCTGTGTTTCT+TGG | - | chr5_2:64632456-64632475 | None:intergenic | 40.0% | |
| ! | TCCACCTCTCAATTTTGCTA+TGG | + | chr5_2:64632576-64632595 | Msa0781920:CDS | 40.0% |
| ACCATAGCAAAATTGAGAGG+TGG | - | chr5_2:64632580-64632599 | None:intergenic | 40.0% | |
| !! | GATAATGGCATTTTCCGTTC+TGG | + | chr5_2:64632601-64632620 | Msa0781920:CDS | 40.0% |
| AAGGTTCAGGAAAACCAGAA+CGG | - | chr5_2:64632618-64632637 | None:intergenic | 40.0% | |
| AAAGAGAAGTTGGAAGGTTC+AGG | - | chr5_2:64632631-64632650 | None:intergenic | 40.0% | |
| TGAAGGAAAGAGAAGTTGGA+AGG | - | chr5_2:64632637-64632656 | None:intergenic | 40.0% | |
| GGTTTGAAGGAAAGAGAAGT+TGG | - | chr5_2:64632641-64632660 | None:intergenic | 40.0% | |
| TTCTCTTTCCTTCAAACCCT+TGG | + | chr5_2:64632643-64632662 | Msa0781920:CDS | 40.0% | |
| TTAGCTTCTGGATATGGTTC+AGG | - | chr5_2:64632853-64632872 | None:intergenic | 40.0% | |
| ACCATATCCAGAAGCTAACT+TGG | + | chr5_2:64632855-64632874 | Msa0781920:CDS | 40.0% | |
| ! | TCCAAGTTAGCTTCTGGATA+TGG | - | chr5_2:64632859-64632878 | None:intergenic | 40.0% |
| ! | AGAAACTCCAAGTTAGCTTC+TGG | - | chr5_2:64632865-64632884 | None:intergenic | 40.0% |
| ! | GGGATCAAGCTTTATCACTT+TGG | + | chr5_2:64632895-64632914 | Msa0781920:CDS | 40.0% |
| !! | CTTTGGAATTGAGGGTCATA+AGG | + | chr5_2:64632912-64632931 | Msa0781920:CDS | 40.0% |
| ATCGTGTCTAGTGTATGTGT+CGG | - | chr5_2:64633024-64633043 | None:intergenic | 40.0% | |
| TATAAAGCACGGACACTCTT+TGG | - | chr5_2:64633146-64633165 | None:intergenic | 40.0% | |
| !! | CTTCAAGTTGGTGTATGGTA+TGG | + | chr5_2:64633310-64633329 | Msa0781920:intron | 40.0% |
| AGCCAATGAATTGCTATGGT+AGG | + | chr5_2:64633391-64633410 | Msa0781920:intron | 40.0% | |
| GGTAGGTTATATGAGGGAAA+AGG | + | chr5_2:64633408-64633427 | Msa0781920:intron | 40.0% | |
| CATACAGCTGAAGAGATTAG+AGG | - | chr5_2:64633818-64633837 | None:intergenic | 40.0% | |
| CTGTTTGATGGAATCTAAGC+TGG | + | chr5_2:64633879-64633898 | Msa0781920:intron | 40.0% | |
| TCCCCTTTCTTTGTCAATGA+TGG | - | chr5_2:64634068-64634087 | None:intergenic | 40.0% | |
| TCTTGATCATGATCAACCCT+AGG | + | chr5_2:64634118-64634137 | Msa0781920:intron | 40.0% | |
| ACCAAGAAGGCAAACTATTG+AGG | + | chr5_2:64634144-64634163 | Msa0781920:intron | 40.0% | |
| ! | TCCTCAATAGTTTGCCTTCT+TGG | - | chr5_2:64634148-64634167 | None:intergenic | 40.0% |
| CCTAATCCACCAAAAACACA+TGG | - | chr5_2:64634360-64634379 | None:intergenic | 40.0% | |
| !!! | CCATGTGTTTTTGGTGGATT+AGG | + | chr5_2:64634357-64634376 | Msa0781920:intron | 40.0% |
| TGGCTTATTCTTGTGTTCCT+TGG | - | chr5_2:64634511-64634530 | None:intergenic | 40.0% | |
| GCAATTTATCAACTGTTGGG+AGG | - | chr5_2:64634664-64634683 | None:intergenic | 40.0% | |
| AAAGGTGATGAACTCCTTCA+AGG | + | chr5_2:64635548-64635567 | Msa0781920:three_prime_UTR | 40.0% | |
| GATATTTGGAGGGAGAGAGT+GGG | - | chr5_2:64632151-64632170 | None:intergenic | 45.0% | |
| TGATATTTGGAGGGAGAGAG+TGG | - | chr5_2:64632152-64632171 | None:intergenic | 45.0% | |
| !!! | GGAAGGGTTTTGGGATCAAA+GGG | - | chr5_2:64632205-64632224 | None:intergenic | 45.0% |
| TTGTGACAAAATAGACGGCG+AGG | + | chr5_2:64632543-64632562 | Msa0781920:CDS | 45.0% | |
| !! | CAAGTTGGTGTATGGTATGG+TGG | + | chr5_2:64633313-64633332 | Msa0781920:intron | 45.0% |
| !! | TGGTGTATGGTATGGTGGAT+TGG | + | chr5_2:64633318-64633337 | Msa0781920:intron | 45.0% |
| ! | TGGCATGTGAAGTCTTTTCC+AGG | + | chr5_2:64633899-64633918 | Msa0781920:intron | 45.0% |
| ! | GGCATGTGAAGTCTTTTCCA+GGG | + | chr5_2:64633900-64633919 | Msa0781920:intron | 45.0% |
| !! | TTGCCTTCTTGGTGTTCCTA+GGG | - | chr5_2:64634137-64634156 | None:intergenic | 45.0% |
| !! | TTTGCCTTCTTGGTGTTCCT+AGG | - | chr5_2:64634138-64634157 | None:intergenic | 45.0% |
| !!! | TGGATCCCATGTGTTTTTGG+TGG | + | chr5_2:64634351-64634370 | Msa0781920:intron | 45.0% |
| !! | GAAGCGCTGAAAGTTCTTCT+TGG | + | chr5_2:64634846-64634865 | Msa0781920:CDS | 45.0% |
| AATTCACTGTAAGCGCGGAA+AGG | + | chr5_2:64634986-64635005 | Msa0781920:CDS | 45.0% | |
| ! | TGTTGTTTACAGCACCGAAC+AGG | + | chr5_2:64635261-64635280 | Msa0781920:intron | 45.0% |
| ATCCGACTAAACAGCCTGTT+CGG | - | chr5_2:64635278-64635297 | None:intergenic | 45.0% | |
| AAGCTCGAGTTTCAGATCAG+AGG | + | chr5_2:64635367-64635386 | Msa0781920:CDS | 45.0% | |
| TTGTTGCTGCAATGCCTTGA+AGG | - | chr5_2:64635565-64635584 | None:intergenic | 45.0% | |
| !! | TCAAGGCATTGCAGCAACAA+AGG | + | chr5_2:64635565-64635584 | Msa0781920:three_prime_UTR | 45.0% |
| !! | AATAAATAAAAAACATTATT+TGG | + | chr5_2:64633652-64633671 | Msa0781920:intron | 5.0% |
| !! | AATATATATTGAATTATTAT+AGG | + | chr5_2:64634386-64634405 | Msa0781920:intron | 5.0% |
| !!! | GGGAAGGGTTTTGGGATCAA+AGG | - | chr5_2:64632206-64632225 | None:intergenic | 50.0% |
| AGCGAAGACCAAGGGTTTGA+AGG | - | chr5_2:64632654-64632673 | None:intergenic | 50.0% | |
| ! | CATGATGGAGCGAAGACCAA+GGG | - | chr5_2:64632662-64632681 | None:intergenic | 50.0% |
| ! | ACATGATGGAGCGAAGACCA+AGG | - | chr5_2:64632663-64632682 | None:intergenic | 50.0% |
| !! | TATTAGCGGTGTTGGCGTGT+CGG | - | chr5_2:64633054-64633073 | None:intergenic | 50.0% |
| GGGAAAAGGGGTCATAAAGC+TGG | + | chr5_2:64633422-64633441 | Msa0781920:intron | 50.0% | |
| CAACCCTAGGAACACCAAGA+AGG | + | chr5_2:64634131-64634150 | Msa0781920:intron | 50.0% | |
| ATGTTGAACGGACGATCGAG+AGG | - | chr5_2:64634216-64634235 | None:intergenic | 50.0% | |
| !! | CTGAGCGTGTTGATTGACTG+TGG | + | chr5_2:64634278-64634297 | Msa0781920:intron | 50.0% |
| ACATCCCAGAAGACACCATC+CGG | + | chr5_2:64634823-64634842 | Msa0781920:CDS | 50.0% | |
| GAAGAACTTTCAGCGCTTCC+CGG | - | chr5_2:64634845-64634864 | None:intergenic | 50.0% | |
| CACCGAACAGGCTGTTTAGT+CGG | + | chr5_2:64635273-64635292 | Msa0781920:CDS | 50.0% | |
| ! | GGAAAGGGGGGAAGGGTTTT+GGG | - | chr5_2:64632214-64632233 | None:intergenic | 55.0% |
| GAGAAAGGGAAAGGGGGGAA+GGG | - | chr5_2:64632221-64632240 | None:intergenic | 55.0% | |
| AGAGAAAGGGAAAGGGGGGA+AGG | - | chr5_2:64632222-64632241 | None:intergenic | 55.0% | |
| !! | TTCTGTGTCGGTGTCGTGTC+TGG | + | chr5_2:64633103-64633122 | Msa0781920:intron | 55.0% |
| !! | TCGGTGTCGTGTCTGGTATC+AGG | + | chr5_2:64633110-64633129 | Msa0781920:intron | 55.0% |
| CATCCCAGAAGACACCATCC+GGG | + | chr5_2:64634824-64634843 | Msa0781920:CDS | 55.0% | |
| CTTCCCGGATGGTGTCTTCT+GGG | - | chr5_2:64634830-64634849 | None:intergenic | 55.0% | |
| AACTTTCAGCGCTTCCCGGA+TGG | - | chr5_2:64634841-64634860 | None:intergenic | 55.0% | |
| ! | CTTTTGCTGCTGCAAAGCGC+TGG | - | chr5_2:64635350-64635369 | None:intergenic | 55.0% |
| ! | GGGAAAGGGGGGAAGGGTTT+TGG | - | chr5_2:64632215-64632234 | None:intergenic | 60.0% |
| GCTTCCCGGATGGTGTCTTC+TGG | - | chr5_2:64634831-64634850 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 64632049 | 64635884 | 64632049 | ID=Msa0781920;Name=Msa0781920 |
| chr5_2 | mRNA | 64632049 | 64635884 | 64632049 | ID=Msa0781920-mRNA-1;Parent=Msa0781920;Name=Msa0781920-mRNA-1;_AED=0.10;_eAED=0.07;_QI=351|0.5|0.6|0.8|1|1|5|426|275 |
| chr5_2 | exon | 64632049 | 64632680 | 64632049 | ID=Msa0781920-mRNA-1:exon:19363;Parent=Msa0781920-mRNA-1 |
| chr5_2 | exon | 64632840 | 64632933 | 64632840 | ID=Msa0781920-mRNA-1:exon:19364;Parent=Msa0781920-mRNA-1 |
| chr5_2 | exon | 64633493 | 64633561 | 64633493 | ID=Msa0781920-mRNA-1:exon:19365;Parent=Msa0781920-mRNA-1 |
| chr5_2 | exon | 64634810 | 64635007 | 64634810 | ID=Msa0781920-mRNA-1:exon:19366;Parent=Msa0781920-mRNA-1 |
| chr5_2 | exon | 64635273 | 64635884 | 64635273 | ID=Msa0781920-mRNA-1:exon:19367;Parent=Msa0781920-mRNA-1 |
| chr5_2 | five_prime_UTR | 64632049 | 64632399 | 64632049 | ID=Msa0781920-mRNA-1:five_prime_utr;Parent=Msa0781920-mRNA-1 |
| chr5_2 | CDS | 64632400 | 64632680 | 64632400 | ID=Msa0781920-mRNA-1:cds;Parent=Msa0781920-mRNA-1 |
| chr5_2 | CDS | 64632840 | 64632933 | 64632840 | ID=Msa0781920-mRNA-1:cds;Parent=Msa0781920-mRNA-1 |
| chr5_2 | CDS | 64633493 | 64633561 | 64633493 | ID=Msa0781920-mRNA-1:cds;Parent=Msa0781920-mRNA-1 |
| chr5_2 | CDS | 64634810 | 64635007 | 64634810 | ID=Msa0781920-mRNA-1:cds;Parent=Msa0781920-mRNA-1 |
| chr5_2 | CDS | 64635273 | 64635458 | 64635273 | ID=Msa0781920-mRNA-1:cds;Parent=Msa0781920-mRNA-1 |
| chr5_2 | three_prime_UTR | 64635459 | 64635884 | 64635459 | ID=Msa0781920-mRNA-1:three_prime_utr;Parent=Msa0781920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
