Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0741920 | XP_003617452.2 | 84.985 | 333 | 34 | 4 | 1 | 319 | 1 | 331 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0741920 | G7K3D3 | 84.985 | 333 | 34 | 4 | 1 | 319 | 1 | 331 | 0.0 | 536 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0741920 | Msa0786280 | 0.863695 | 2.072436e-64 | -8.615850e-47 |
| Msa0741920 | Msa0823100 | 0.866851 | 2.107453e-65 | -8.615850e-47 |
| Msa0741920 | Msa0862120 | 0.827938 | 1.186329e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0741920 | MtrunA17_Chr5g0443381 | 84.985 | 333 | 34 | 4 | 1 | 319 | 1 | 331 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 90 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAACATGCCTCAAAATA+TGG | 0.198270 | 5_1:+61716865 | None:intergenic |
| GGATAATAATGAAGGATTTA+AGG | 0.221973 | 5_1:-61718781 | Msa0741920:CDS |
| ACAATATGAAAACTGAAATT+TGG | 0.241629 | 5_1:+61716783 | None:intergenic |
| ATCAATATCAACAAAATCTT+TGG | 0.250643 | 5_1:+61719013 | None:intergenic |
| AGCAAGTTGACTGCTTTAAT+AGG | 0.278280 | 5_1:+61716909 | None:intergenic |
| CATGCAACTGAAATGAGTTT+TGG | 0.306374 | 5_1:+61716731 | None:intergenic |
| TACAGCTTTACTGCTTGATT+TGG | 0.343468 | 5_1:-61716832 | Msa0741920:three_prime_UTR |
| ATCTGAAAATCATAGCAAAA+TGG | 0.345325 | 5_1:-61719168 | Msa0741920:CDS |
| TGACTCCTTAGCACTTTCAT+AGG | 0.369555 | 5_1:+61718530 | None:intergenic |
| GTGGATAAATAAACAAATAA+AGG | 0.379814 | 5_1:+61719594 | None:intergenic |
| GGCCTCAGAAGCTGTAGAAT+TGG | 0.384608 | 5_1:-61718886 | Msa0741920:CDS |
| AAGAACATGCCTCAAAATAT+GGG | 0.391107 | 5_1:+61716866 | None:intergenic |
| GTTAACTTCTATTGCATCAC+TGG | 0.396043 | 5_1:+61718926 | None:intergenic |
| GCAAGTTGACTGCTTTAATA+GGG | 0.396086 | 5_1:+61716910 | None:intergenic |
| CCACCTCATCATTATCTTCA+AGG | 0.400815 | 5_1:+61718829 | None:intergenic |
| AACGACTCCTCAATTCCCTT+TGG | 0.426179 | 5_1:+61718609 | None:intergenic |
| CTCAAAGGCAACACACCTCT+TGG | 0.437333 | 5_1:-61718246 | Msa0741920:CDS |
| AGCTGTAGAATTGGAATTGA+AGG | 0.441143 | 5_1:-61718877 | Msa0741920:CDS |
| AGATTCATTAAGTGAAGATA+AGG | 0.458262 | 5_1:-61719099 | Msa0741920:CDS |
| GTTGGGCAGAGTCAAAGGTT+TGG | 0.462169 | 5_1:+61719485 | None:intergenic |
| AGGCCATCTTATTCTCAACT+TGG | 0.469285 | 5_1:+61718904 | None:intergenic |
| TGCTTTGGAGACAAGTGGTA+AGG | 0.469917 | 5_1:-61718664 | Msa0741920:CDS |
| TGAAGTGGTTGAAACAGTTA+AGG | 0.481899 | 5_1:-61718754 | Msa0741920:CDS |
| CCTCGATATACCTTTGCTCA+TGG | 0.486617 | 5_1:+61716960 | None:intergenic |
| AATGAAACCACATCAGTTGA+AGG | 0.488510 | 5_1:+61718699 | None:intergenic |
| TATGAAAACTGAAATTTGGT+AGG | 0.490910 | 5_1:+61716787 | None:intergenic |
| CTGCAGTTCTCATGCTGCGA+GGG | 0.494804 | 5_1:-61716935 | Msa0741920:three_prime_UTR |
| TCTAGAGGCATTGAAAATCA+AGG | 0.497245 | 5_1:-61718438 | Msa0741920:CDS |
| CTCGATATACCTTTGCTCAT+GGG | 0.498809 | 5_1:+61716961 | None:intergenic |
| GACTCCTCAATTCCCTTTGG+AGG | 0.499248 | 5_1:+61718612 | None:intergenic |
| AACATTGCATGAAACTCAAA+AGG | 0.501815 | 5_1:-61719129 | Msa0741920:CDS |
| TGTTGGTTGGGCAGAGTCAA+AGG | 0.507031 | 5_1:+61719480 | None:intergenic |
| GTAGGTGAAGAGTGTTGGTT+GGG | 0.507556 | 5_1:+61719468 | None:intergenic |
| ATATGGGGCTCAAAATCAAC+GGG | 0.509920 | 5_1:+61716882 | None:intergenic |
| AATAAACAAATAAAGGAGAA+TGG | 0.511031 | 5_1:+61719601 | None:intergenic |
| TCAAATAGTTGGGAGCTTGA+AGG | 0.524609 | 5_1:-61716991 | Msa0741920:intron |
| TGTTCCTCCAAAGGGAATTG+AGG | 0.527183 | 5_1:-61718616 | Msa0741920:CDS |
| GTTGGGAGCTTGAAGGAGGT+TGG | 0.528065 | 5_1:-61716984 | Msa0741920:three_prime_UTR |
| TTGGAATTGAAGGATGAGAA+AGG | 0.531804 | 5_1:-61718867 | Msa0741920:CDS |
| ACTTCAAAGGATAATAATGA+AGG | 0.536408 | 5_1:-61718789 | Msa0741920:CDS |
| TGAAGATAATGATGAGGTGG+AGG | 0.538135 | 5_1:-61718826 | Msa0741920:CDS |
| CACCTCATCATTATCTTCAA+GGG | 0.545624 | 5_1:+61718830 | None:intergenic |
| CTCTTCGAAATTCTGAGGCA+TGG | 0.548640 | 5_1:-61718208 | Msa0741920:CDS |
| TGGGTTTGTAGTTGAACAGT+AGG | 0.549277 | 5_1:+61719450 | None:intergenic |
| TTCATTAAGTGAAGATAAGG+AGG | 0.550055 | 5_1:-61719096 | Msa0741920:CDS |
| TTTGGTATCACTGATAGACT+TGG | 0.551465 | 5_1:+61719031 | None:intergenic |
| AAAATGGAAGGAAATTTGAA+TGG | 0.553733 | 5_1:-61719152 | Msa0741920:CDS |
| GAACAGTAGGTGAAGAGTGT+TGG | 0.557856 | 5_1:+61719463 | None:intergenic |
| AATTGATGATGAGGGTGAAA+AGG | 0.558460 | 5_1:-61718640 | Msa0741920:CDS |
| TAACCAAGTTGAGAATAAGA+TGG | 0.563805 | 5_1:-61718907 | Msa0741920:CDS |
| GCATGGTGATAGATAAATCA+AGG | 0.565697 | 5_1:-61718191 | Msa0741920:intron |
| CTAGAGGCATTGAAAATCAA+GGG | 0.566438 | 5_1:-61718437 | Msa0741920:CDS |
| AGGATTTAAGGTAACTGAAG+TGG | 0.567004 | 5_1:-61718769 | Msa0741920:CDS |
| TTCCAATTCTACAGCTTCTG+AGG | 0.567350 | 5_1:+61718884 | None:intergenic |
| GAAAAGGTTGTTCCTCCAAA+GGG | 0.568369 | 5_1:-61718624 | Msa0741920:CDS |
| TGTTGAGTCATGCAAGGTGG+TGG | 0.568757 | 5_1:-61718985 | Msa0741920:CDS |
| GCTTTGGAGACAAGTGGTAA+GGG | 0.569139 | 5_1:-61718663 | Msa0741920:CDS |
| ATGAAAACTGAAATTTGGTA+GGG | 0.571179 | 5_1:+61716788 | None:intergenic |
| GGACGTGACAGTAGCTGAGG+AGG | 0.574678 | 5_1:-61718733 | Msa0741920:CDS |
| TCTGCTGATGATGATTATGA+TGG | 0.574692 | 5_1:-61719059 | Msa0741920:CDS |
| TGAAAAGGTTGTTCCTCCAA+AGG | 0.575350 | 5_1:-61718625 | Msa0741920:CDS |
| AGTAGGTGAAGAGTGTTGGT+TGG | 0.576236 | 5_1:+61719467 | None:intergenic |
| ACCTCTTGGAAGAATTGTTG+CGG | 0.585031 | 5_1:-61718232 | Msa0741920:CDS |
| ATCATCCTATGAAAGTGCTA+AGG | 0.585651 | 5_1:-61718535 | Msa0741920:CDS |
| GTATAGGCATGGTTACTGAC+TGG | 0.588901 | 5_1:+61719544 | None:intergenic |
| AAAGGGAATTGAGGAGTCGT+TGG | 0.588910 | 5_1:-61718607 | Msa0741920:CDS |
| GTTTGTTACTTCGAAGAATG+CGG | 0.590626 | 5_1:+61716702 | None:intergenic |
| GCGGACTCTTCGAAATTCTG+AGG | 0.591252 | 5_1:-61718213 | Msa0741920:CDS |
| GAAAATCATAGCAAAATGGA+AGG | 0.594613 | 5_1:-61719164 | Msa0741920:CDS |
| AATATGGGGCTCAAAATCAA+CGG | 0.597706 | 5_1:+61716881 | None:intergenic |
| ACTGCAGTTCTCATGCTGCG+AGG | 0.610260 | 5_1:-61716936 | Msa0741920:three_prime_UTR |
| AACTGAATTAGCTACTTCAA+AGG | 0.610607 | 5_1:-61718802 | Msa0741920:CDS |
| GGAGGTTGGCCCATGAGCAA+AGG | 0.613149 | 5_1:-61716970 | Msa0741920:three_prime_UTR |
| CCTTGAAGATAATGATGAGG+TGG | 0.613497 | 5_1:-61718829 | Msa0741920:CDS |
| TAAGGACGTGACAGTAGCTG+AGG | 0.613963 | 5_1:-61718736 | Msa0741920:CDS |
| AATAGTTGGGAGCTTGAAGG+AGG | 0.616938 | 5_1:-61716988 | Msa0741920:intron |
| GAAGTTGCTTTGGAGACAAG+TGG | 0.618201 | 5_1:-61718669 | Msa0741920:CDS |
| AGAACATGCCTCAAAATATG+GGG | 0.635864 | 5_1:+61716867 | None:intergenic |
| TCCGCAACAATTCTTCCAAG+AGG | 0.641763 | 5_1:+61718231 | None:intergenic |
| ATCTACACATGAGAAAGTTG+AGG | 0.644784 | 5_1:-61718580 | Msa0741920:CDS |
| ACTGTTCAACTACAAACCCA+AGG | 0.650999 | 5_1:-61719447 | Msa0741920:intron |
| ATCCCTTGAAGATAATGATG+AGG | 0.651217 | 5_1:-61718832 | Msa0741920:CDS |
| GGTAAGGGAATTGATGATGA+GGG | 0.658471 | 5_1:-61718648 | Msa0741920:CDS |
| TAGAGGCATTGAAAATCAAG+GGG | 0.660240 | 5_1:-61718436 | Msa0741920:intron |
| TGGTAAGGGAATTGATGATG+AGG | 0.669864 | 5_1:-61718649 | Msa0741920:CDS |
| TGCTTGATTTGGTTTCAAAG+TGG | 0.673169 | 5_1:-61716821 | Msa0741920:three_prime_UTR |
| CCATGAGCAAAGGTATATCG+AGG | 0.675397 | 5_1:-61716960 | Msa0741920:three_prime_UTR |
| GACACGATTGAAGAATCTAG+AGG | 0.692176 | 5_1:-61718453 | Msa0741920:CDS |
| TGAACATGTTGAGTCATGCA+AGG | 0.711218 | 5_1:-61718991 | Msa0741920:CDS |
| ACATGTTGAGTCATGCAAGG+TGG | 0.794332 | 5_1:-61718988 | Msa0741920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTATAGTAATATGA+GGG | + | chr5_1:61718193-61718212 | None:intergenic | 10.0% |
| !!! | ATATTTTTTATAGTAATATG+AGG | + | chr5_1:61718194-61718213 | None:intergenic | 10.0% |
| !!! | AATAGTTTTTCTTTTTTATA+TGG | - | chr5_1:61718335-61718354 | Msa0741920:intron | 10.0% |
| !!! | TTTTTCTTTCAATAACAAAT+TGG | - | chr5_1:61716974-61716993 | Msa0741920:three_prime_UTR | 15.0% |
| !!! | ACTAACATGTTTTAATTAAA+AGG | - | chr5_1:61718124-61718143 | Msa0741920:intron | 15.0% |
| !! | AAAAGAAAAACTATTTAACA+AGG | + | chr5_1:61718330-61718349 | None:intergenic | 15.0% |
| !!! | ATTTTTTTGATTCAAATAGT+TGG | - | chr5_1:61719139-61719158 | Msa0741920:CDS | 15.0% |
| !!! | TTTTTTTGATTCAAATAGTT+GGG | - | chr5_1:61719140-61719159 | Msa0741920:CDS | 15.0% |
| !!! | ATTTTTTTGATTCAAATAGT+TGG | - | chr5_1:61719139-61719158 | Msa0741920:CDS | 15.0% |
| !!! | TTTTTTTGATTCAAATAGTT+GGG | - | chr5_1:61719140-61719159 | Msa0741920:CDS | 15.0% |
| !!! | TCCTAATTATGATATTTTTA+TGG | - | chr5_1:61719599-61719618 | Msa0741920:five_prime_UTR | 15.0% |
| !! | TCCATAAAAATATCATAATT+AGG | + | chr5_1:61719603-61719622 | None:intergenic | 15.0% |
| !! | AATAAACAAATAAAGGAGAA+TGG | + | chr5_1:61716656-61716675 | None:intergenic | 20.0% |
| !! | GTGGATAAATAAACAAATAA+AGG | + | chr5_1:61716663-61716682 | None:intergenic | 20.0% |
| !!! | TGTTTTGTTTTTTTTCTTGA+AGG | + | chr5_1:61716735-61716754 | None:intergenic | 20.0% |
| !! | GTAACAATTATTGAAAACAT+AGG | + | chr5_1:61716925-61716944 | None:intergenic | 20.0% |
| !!! | TGTTTTTTTTTTTTATCAGC+AGG | - | chr5_1:61717054-61717073 | Msa0741920:intron | 20.0% |
| !! | ATCAATATCAACAAAATCTT+TGG | + | chr5_1:61717244-61717263 | None:intergenic | 20.0% |
| !! | GAAAATAAAATCCTAAACTA+AGG | + | chr5_1:61718098-61718117 | None:intergenic | 20.0% |
| !! | ATTACTATAACAAAGTAACT+AGG | + | chr5_1:61718435-61718454 | None:intergenic | 20.0% |
| !! | TTATAGTAATCTAAACATGT+GGG | - | chr5_1:61718445-61718464 | Msa0741920:CDS | 20.0% |
| !!! | ATATTTTCAATAGATTCTCT+TGG | - | chr5_1:61718498-61718517 | Msa0741920:CDS | 20.0% |
| !! | ACAATATGAAAACTGAAATT+TGG | + | chr5_1:61719474-61719493 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTCTTGAAGGTAT+AGG | + | chr5_1:61716729-61716748 | None:intergenic | 25.0% |
| ! | AAAACAGAAACAACAAAAAG+AGG | + | chr5_1:61716868-61716887 | None:intergenic | 25.0% |
| ! | GAAAAACAAAGAAAACATGA+GGG | + | chr5_1:61716960-61716979 | None:intergenic | 25.0% |
| ! | AGAAAAACAAAGAAAACATG+AGG | + | chr5_1:61716961-61716980 | None:intergenic | 25.0% |
| !! | AATTAGATCTTTTCCACATA+TGG | - | chr5_1:61717005-61717024 | Msa0741920:intron | 25.0% |
| ! | ATAGAGATATATACCATATG+TGG | + | chr5_1:61717021-61717040 | None:intergenic | 25.0% |
| ! | ATATGGTATATATCTCTATG+TGG | - | chr5_1:61717022-61717041 | Msa0741920:intron | 25.0% |
| ! | ATCTGAAAATCATAGCAAAA+TGG | - | chr5_1:61717086-61717105 | Msa0741920:intron | 25.0% |
| ! | AAAATGGAAGGAAATTTGAA+TGG | - | chr5_1:61717102-61717121 | Msa0741920:intron | 25.0% |
| ! | AGATTCATTAAGTGAAGATA+AGG | - | chr5_1:61717155-61717174 | Msa0741920:intron | 25.0% |
| ! | ACTTCAAAGGATAATAATGA+AGG | - | chr5_1:61717465-61717484 | Msa0741920:intron | 25.0% |
| ! | GGATAATAATGAAGGATTTA+AGG | - | chr5_1:61717473-61717492 | Msa0741920:intron | 25.0% |
| ! | ATTGTTAATCAAACTTTGGT+TGG | + | chr5_1:61718226-61718245 | None:intergenic | 25.0% |
| ! | ATGCATTGTTAATCAAACTT+TGG | + | chr5_1:61718230-61718249 | None:intergenic | 25.0% |
| !! | CAATGCATTTTATGTCAATA+TGG | - | chr5_1:61718242-61718261 | Msa0741920:CDS | 25.0% |
| ! | TTTAACAAGGAATGTTTAAC+TGG | + | chr5_1:61718317-61718336 | None:intergenic | 25.0% |
| !!! | AGATTTTTGAACCTCTAAAA+GGG | + | chr5_1:61718386-61718405 | None:intergenic | 25.0% |
| ! | GTTATAGTAATCTAAACATG+TGG | - | chr5_1:61718444-61718463 | Msa0741920:CDS | 25.0% |
| ! | TAGATATTTGACTAGACTTT+AGG | + | chr5_1:61718535-61718554 | None:intergenic | 25.0% |
| !! | AATGATGAGATGTTTAAGTT+TGG | + | chr5_1:61718635-61718654 | None:intergenic | 25.0% |
| ! | CAAAGTTAACTTAAATCGAT+AGG | - | chr5_1:61718799-61718818 | Msa0741920:CDS | 25.0% |
| ! | AATGTGACAATTCATAGATA+TGG | + | chr5_1:61718901-61718920 | None:intergenic | 25.0% |
| !! | AATTTAGAGGATGAACTTTT+TGG | - | chr5_1:61718961-61718980 | Msa0741920:CDS | 25.0% |
| ! | ATGAAAACTGAAATTTGGTA+GGG | + | chr5_1:61719469-61719488 | None:intergenic | 25.0% |
| ! | TATGAAAACTGAAATTTGGT+AGG | + | chr5_1:61719470-61719489 | None:intergenic | 25.0% |
| !! | TTGTTTTGTAAAGAGAATGG+TGG | + | chr5_1:61716682-61716701 | None:intergenic | 30.0% |
| !!! | GCTTTGTTTTGTAAAGAGAA+TGG | + | chr5_1:61716685-61716704 | None:intergenic | 30.0% |
| AGAAACAACAAAAAGAGGTT+GGG | + | chr5_1:61716863-61716882 | None:intergenic | 30.0% | |
| TAGTTTACTACATCCTTGTA+TGG | - | chr5_1:61716896-61716915 | Msa0741920:three_prime_UTR | 30.0% | |
| AAAACATAGGATACCATACA+AGG | + | chr5_1:61716912-61716931 | None:intergenic | 30.0% | |
| GAAAATCATAGCAAAATGGA+AGG | - | chr5_1:61717090-61717109 | Msa0741920:intron | 30.0% | |
| AACATTGCATGAAACTCAAA+AGG | - | chr5_1:61717125-61717144 | Msa0741920:intron | 30.0% | |
| TTCATTAAGTGAAGATAAGG+AGG | - | chr5_1:61717158-61717177 | Msa0741920:intron | 30.0% | |
| ! | TAACCAAGTTGAGAATAAGA+TGG | - | chr5_1:61717347-61717366 | Msa0741920:intron | 30.0% |
| AACTGAATTAGCTACTTCAA+AGG | - | chr5_1:61717452-61717471 | Msa0741920:intron | 30.0% | |
| ! | TGATGTGGTTTCATTTTCAA+GGG | - | chr5_1:61717563-61717582 | Msa0741920:intron | 30.0% |
| ! | TGCACAATCTAAAATGTCTA+TGG | + | chr5_1:61717903-61717922 | None:intergenic | 30.0% |
| AACATGTTGAAACAGATGTA+GGG | - | chr5_1:61718147-61718166 | Msa0741920:intron | 30.0% | |
| GTCAATATGGTCAAAATTGT+TGG | - | chr5_1:61718255-61718274 | Msa0741920:CDS | 30.0% | |
| ! | CAGATTTTTGAACCTCTAAA+AGG | + | chr5_1:61718387-61718406 | None:intergenic | 30.0% |
| TTGGTTATTGACCAATCTTT+GGG | + | chr5_1:61718616-61718635 | None:intergenic | 30.0% | |
| TTTGGTTATTGACCAATCTT+TGG | + | chr5_1:61718617-61718636 | None:intergenic | 30.0% | |
| TCCCTAAAATTGTAAAACAC+CGG | - | chr5_1:61718715-61718734 | Msa0741920:CDS | 30.0% | |
| ! | ACCGGTGTTTTACAATTTTA+GGG | + | chr5_1:61718719-61718738 | None:intergenic | 30.0% |
| ! | AACCGGTGTTTTACAATTTT+AGG | + | chr5_1:61718720-61718739 | None:intergenic | 30.0% |
| AAACCAAGGATGAATTTAAC+CGG | + | chr5_1:61718737-61718756 | None:intergenic | 30.0% | |
| ATTGCTAATTCGTAAAACCA+AGG | + | chr5_1:61718751-61718770 | None:intergenic | 30.0% | |
| TGGATTGACGTTAAAATCTT+CGG | - | chr5_1:61718981-61719000 | Msa0741920:CDS | 30.0% | |
| ! | GGCTAATTCGTTAACAATTT+TGG | + | chr5_1:61719008-61719027 | None:intergenic | 30.0% |
| !!! | TAGCTTTGTTTTTTGCTCAT+GGG | + | chr5_1:61719183-61719202 | None:intergenic | 30.0% |
| !!! | TTAGCTTTGTTTTTTGCTCA+TGG | + | chr5_1:61719184-61719203 | None:intergenic | 30.0% |
| AAGAACATGCCTCAAAATAT+GGG | + | chr5_1:61719391-61719410 | None:intergenic | 30.0% | |
| AAAGAACATGCCTCAAAATA+TGG | + | chr5_1:61719392-61719411 | None:intergenic | 30.0% | |
| TTGTAAACTACAATAAACCG+CGG | - | chr5_1:61719490-61719509 | Msa0741920:CDS | 30.0% | |
| !! | TTTTCTTGAAGGTATAGGCA+TGG | + | chr5_1:61716724-61716743 | None:intergenic | 35.0% |
| !!! | CAAAGGTTTGGTTTTGTTCT+TGG | + | chr5_1:61716760-61716779 | None:intergenic | 35.0% |
| CAGAAACAACAAAAAGAGGT+TGG | + | chr5_1:61716864-61716883 | None:intergenic | 35.0% | |
| AGAAAACATGAGGGTTTGAA+AGG | + | chr5_1:61716951-61716970 | None:intergenic | 35.0% | |
| ! | TCTGCTGATGATGATTATGA+TGG | - | chr5_1:61717195-61717214 | Msa0741920:intron | 35.0% |
| TTTGGTATCACTGATAGACT+TGG | + | chr5_1:61717226-61717245 | None:intergenic | 35.0% | |
| GTTAACTTCTATTGCATCAC+TGG | + | chr5_1:61717331-61717350 | None:intergenic | 35.0% | |
| AGCTGTAGAATTGGAATTGA+AGG | - | chr5_1:61717377-61717396 | Msa0741920:intron | 35.0% | |
| TTGGAATTGAAGGATGAGAA+AGG | - | chr5_1:61717387-61717406 | Msa0741920:intron | 35.0% | |
| ATCCCTTGAAGATAATGATG+AGG | - | chr5_1:61717422-61717441 | Msa0741920:intron | 35.0% | |
| CACCTCATCATTATCTTCAA+GGG | + | chr5_1:61717427-61717446 | None:intergenic | 35.0% | |
| ! | AGGATTTAAGGTAACTGAAG+TGG | - | chr5_1:61717485-61717504 | Msa0741920:intron | 35.0% |
| TGAAGTGGTTGAAACAGTTA+AGG | - | chr5_1:61717500-61717519 | Msa0741920:intron | 35.0% | |
| AATGAAACCACATCAGTTGA+AGG | + | chr5_1:61717558-61717577 | None:intergenic | 35.0% | |
| ! | CTGATGTGGTTTCATTTTCA+AGG | - | chr5_1:61717562-61717581 | Msa0741920:intron | 35.0% |
| !! | ATTTTCAAGGGAAGTTGCTT+TGG | - | chr5_1:61717575-61717594 | Msa0741920:intron | 35.0% |
| !! | AATTGATGATGAGGGTGAAA+AGG | - | chr5_1:61717614-61717633 | Msa0741920:intron | 35.0% |
| ATCTACACATGAGAAAGTTG+AGG | - | chr5_1:61717674-61717693 | Msa0741920:intron | 35.0% | |
| !! | ATCATCCTATGAAAGTGCTA+AGG | - | chr5_1:61717719-61717738 | Msa0741920:intron | 35.0% |
| !! | TCTAGAGGCATTGAAAATCA+AGG | - | chr5_1:61717816-61717835 | Msa0741920:intron | 35.0% |
| !! | CTAGAGGCATTGAAAATCAA+GGG | - | chr5_1:61717817-61717836 | Msa0741920:intron | 35.0% |
| !! | TAGAGGCATTGAAAATCAAG+GGG | - | chr5_1:61717818-61717837 | Msa0741920:intron | 35.0% |
| CTGTCACAAAAGAAAGAAGA+AGG | + | chr5_1:61717972-61717991 | None:intergenic | 35.0% | |
| GCATGGTGATAGATAAATCA+AGG | - | chr5_1:61718063-61718082 | Msa0741920:intron | 35.0% | |
| GGTGAGTAAAACCTTAGTTT+AGG | - | chr5_1:61718084-61718103 | Msa0741920:intron | 35.0% | |
| GAACATGTTGAAACAGATGT+AGG | - | chr5_1:61718146-61718165 | Msa0741920:intron | 35.0% | |
| AACTTGTGAACCAAACTTGT+TGG | - | chr5_1:61718582-61718601 | Msa0741920:CDS | 35.0% | |
| ! | ACTTGTGAACCAAACTTGTT+GGG | - | chr5_1:61718583-61718602 | Msa0741920:CDS | 35.0% |
| ACAGTCCAATCTTGAACTTA+GGG | + | chr5_1:61718672-61718691 | None:intergenic | 35.0% | |
| AACAGTCCAATCTTGAACTT+AGG | + | chr5_1:61718673-61718692 | None:intergenic | 35.0% | |
| ACTTAAATCGATAGGCAACA+TGG | - | chr5_1:61718807-61718826 | Msa0741920:CDS | 35.0% | |
| CGGCATGTTAAATAAAGATG+TGG | - | chr5_1:61718832-61718851 | Msa0741920:CDS | 35.0% | |
| AAACTTGCAACATGTTGTCT+AGG | - | chr5_1:61718933-61718952 | Msa0741920:CDS | 35.0% | |
| AACTTGCAACATGTTGTCTA+GGG | - | chr5_1:61718934-61718953 | Msa0741920:CDS | 35.0% | |
| CAAGACAGATTAGATTATGC+AGG | + | chr5_1:61719047-61719066 | None:intergenic | 35.0% | |
| AGCTAAATTAAGCTCTTGAG+TGG | - | chr5_1:61719085-61719104 | Msa0741920:CDS | 35.0% | |
| AGCTAAATTAAGCTCTTGAG+TGG | - | chr5_1:61719085-61719104 | Msa0741920:CDS | 35.0% | |
| ! | GCAAGTTGACTGCTTTAATA+GGG | + | chr5_1:61719347-61719366 | None:intergenic | 35.0% |
| ! | AGCAAGTTGACTGCTTTAAT+AGG | + | chr5_1:61719348-61719367 | None:intergenic | 35.0% |
| AATATGGGGCTCAAAATCAA+CGG | + | chr5_1:61719376-61719395 | None:intergenic | 35.0% | |
| ! | ATTTTGAGCCCCATATTTTG+AGG | - | chr5_1:61719379-61719398 | Msa0741920:intron | 35.0% |
| AGAACATGCCTCAAAATATG+GGG | + | chr5_1:61719390-61719409 | None:intergenic | 35.0% | |
| TACAGCTTTACTGCTTGATT+TGG | - | chr5_1:61719422-61719441 | Msa0741920:intron | 35.0% | |
| !! | TGCTTGATTTGGTTTCAAAG+TGG | - | chr5_1:61719433-61719452 | Msa0741920:intron | 35.0% |
| !! | GTTTTGGACTAAATAATCCG+CGG | + | chr5_1:61719510-61719529 | None:intergenic | 35.0% |
| ! | CATGCAACTGAAATGAGTTT+TGG | + | chr5_1:61719526-61719545 | None:intergenic | 35.0% |
| ! | GTTTGTTACTTCGAAGAATG+CGG | + | chr5_1:61719555-61719574 | None:intergenic | 35.0% |
| TGGGTTTGTAGTTGAACAGT+AGG | + | chr5_1:61716807-61716826 | None:intergenic | 40.0% | |
| ACTGTTCAACTACAAACCCA+AGG | - | chr5_1:61716807-61716826 | Msa0741920:three_prime_UTR | 40.0% | |
| CAACAAAAAGAGGTTGGGAA+AGG | + | chr5_1:61716858-61716877 | None:intergenic | 40.0% | |
| TGAACATGTTGAGTCATGCA+AGG | - | chr5_1:61717263-61717282 | Msa0741920:intron | 40.0% | |
| AGGCCATCTTATTCTCAACT+TGG | + | chr5_1:61717353-61717372 | None:intergenic | 40.0% | |
| TTCCAATTCTACAGCTTCTG+AGG | + | chr5_1:61717373-61717392 | None:intergenic | 40.0% | |
| CCACCTCATCATTATCTTCA+AGG | + | chr5_1:61717428-61717447 | None:intergenic | 40.0% | |
| CCTTGAAGATAATGATGAGG+TGG | - | chr5_1:61717425-61717444 | Msa0741920:intron | 40.0% | |
| TGAAGATAATGATGAGGTGG+AGG | - | chr5_1:61717428-61717447 | Msa0741920:intron | 40.0% | |
| ! | TGTTTTGCCTTCAACTGATG+TGG | - | chr5_1:61717548-61717567 | Msa0741920:intron | 40.0% |
| !! | TGGTAAGGGAATTGATGATG+AGG | - | chr5_1:61717605-61717624 | Msa0741920:intron | 40.0% |
| !! | GGTAAGGGAATTGATGATGA+GGG | - | chr5_1:61717606-61717625 | Msa0741920:intron | 40.0% |
| TGAAAAGGTTGTTCCTCCAA+AGG | - | chr5_1:61717629-61717648 | Msa0741920:intron | 40.0% | |
| GAAAAGGTTGTTCCTCCAAA+GGG | - | chr5_1:61717630-61717649 | Msa0741920:intron | 40.0% | |
| TGACTCCTTAGCACTTTCAT+AGG | + | chr5_1:61717727-61717746 | None:intergenic | 40.0% | |
| GACACGATTGAAGAATCTAG+AGG | - | chr5_1:61717801-61717820 | Msa0741920:intron | 40.0% | |
| !! | GCATTTTTGCTGTGACTCAA+AGG | - | chr5_1:61717993-61718012 | Msa0741920:intron | 40.0% |
| ACCTCTTGGAAGAATTGTTG+CGG | - | chr5_1:61718022-61718041 | Msa0741920:intron | 40.0% | |
| GAGGGTAATTGACACAAAGT+TGG | + | chr5_1:61718175-61718194 | None:intergenic | 40.0% | |
| ! | CTGATTGATCACCCTTTTAG+AGG | - | chr5_1:61718372-61718391 | Msa0741920:intron | 40.0% |
| TTTCCCCCTAAGTTCAAGAT+TGG | - | chr5_1:61718664-61718683 | Msa0741920:CDS | 40.0% | |
| AGTCCAATCTTGAACTTAGG+GGG | + | chr5_1:61718670-61718689 | None:intergenic | 40.0% | |
| CAGTCCAATCTTGAACTTAG+GGG | + | chr5_1:61718671-61718690 | None:intergenic | 40.0% | |
| ! | ACACCGGTTAAATTCATCCT+TGG | - | chr5_1:61718731-61718750 | Msa0741920:CDS | 40.0% |
| AGTGAAGTGTGGAGTCTATA+TGG | + | chr5_1:61718862-61718881 | None:intergenic | 40.0% | |
| AATGAAGTCGTAGTGAAGTG+TGG | + | chr5_1:61718873-61718892 | None:intergenic | 40.0% | |
| CACTTCACTACGACTTCATT+AGG | - | chr5_1:61718873-61718892 | Msa0741920:CDS | 40.0% | |
| TGTCTAGGGACTGAATTTAG+AGG | - | chr5_1:61718948-61718967 | Msa0741920:CDS | 40.0% | |
| TCAAATAGTTGGGAGCTTGA+AGG | - | chr5_1:61719150-61719169 | Msa0741920:CDS | 40.0% | |
| TCAAATAGTTGGGAGCTTGA+AGG | - | chr5_1:61719150-61719169 | Msa0741920:CDS | 40.0% | |
| CTCGATATACCTTTGCTCAT+GGG | + | chr5_1:61719296-61719315 | None:intergenic | 40.0% | |
| ATATGGGGCTCAAAATCAAC+GGG | + | chr5_1:61719375-61719394 | None:intergenic | 40.0% | |
| GTATAGGCATGGTTACTGAC+TGG | + | chr5_1:61716713-61716732 | None:intergenic | 45.0% | |
| !! | GTAGGTGAAGAGTGTTGGTT+GGG | + | chr5_1:61716789-61716808 | None:intergenic | 45.0% |
| !! | AGTAGGTGAAGAGTGTTGGT+TGG | + | chr5_1:61716790-61716809 | None:intergenic | 45.0% |
| ! | GAACAGTAGGTGAAGAGTGT+TGG | + | chr5_1:61716794-61716813 | None:intergenic | 45.0% |
| GAGAGAGTGATGACTACCTT+GGG | + | chr5_1:61716826-61716845 | None:intergenic | 45.0% | |
| AGAGAGAGTGATGACTACCT+TGG | + | chr5_1:61716827-61716846 | None:intergenic | 45.0% | |
| AAGAGGTTGGGAAAGGTAGA+TGG | + | chr5_1:61716851-61716870 | None:intergenic | 45.0% | |
| ACATGTTGAGTCATGCAAGG+TGG | - | chr5_1:61717266-61717285 | Msa0741920:intron | 45.0% | |
| !! | GAAGTTGCTTTGGAGACAAG+TGG | - | chr5_1:61717585-61717604 | Msa0741920:intron | 45.0% |
| !! | TGCTTTGGAGACAAGTGGTA+AGG | - | chr5_1:61717590-61717609 | Msa0741920:intron | 45.0% |
| !! | GCTTTGGAGACAAGTGGTAA+GGG | - | chr5_1:61717591-61717610 | Msa0741920:intron | 45.0% |
| TGTTCCTCCAAAGGGAATTG+AGG | - | chr5_1:61717638-61717657 | Msa0741920:intron | 45.0% | |
| AACGACTCCTCAATTCCCTT+TGG | + | chr5_1:61717648-61717667 | None:intergenic | 45.0% | |
| AAAGGGAATTGAGGAGTCGT+TGG | - | chr5_1:61717647-61717666 | Msa0741920:intron | 45.0% | |
| TCCGCAACAATTCTTCCAAG+AGG | + | chr5_1:61718026-61718045 | None:intergenic | 45.0% | |
| !! | CTCTTCGAAATTCTGAGGCA+TGG | - | chr5_1:61718046-61718065 | Msa0741920:intron | 45.0% |
| GGTAGAAGACCCAACAAGTT+TGG | + | chr5_1:61718595-61718614 | None:intergenic | 45.0% | |
| TGGGTCTTCTACCCAAAGAT+TGG | - | chr5_1:61718602-61718621 | Msa0741920:CDS | 45.0% | |
| AATCGATAGGCAACATGGCA+CGG | - | chr5_1:61718812-61718831 | Msa0741920:CDS | 45.0% | |
| GCAGGCAGCATATTGTGAAT+AGG | + | chr5_1:61719029-61719048 | None:intergenic | 45.0% | |
| AATAGTTGGGAGCTTGAAGG+AGG | - | chr5_1:61719153-61719172 | Msa0741920:CDS | 45.0% | |
| AATAGTTGGGAGCTTGAAGG+AGG | - | chr5_1:61719153-61719172 | Msa0741920:CDS | 45.0% | |
| CCTCGATATACCTTTGCTCA+TGG | + | chr5_1:61719297-61719316 | None:intergenic | 45.0% | |
| ! | CCATGAGCAAAGGTATATCG+AGG | - | chr5_1:61719294-61719313 | Msa0741920:intron | 45.0% |
| GTTGGGCAGAGTCAAAGGTT+TGG | + | chr5_1:61716772-61716791 | None:intergenic | 50.0% | |
| ! | TGTTGGTTGGGCAGAGTCAA+AGG | + | chr5_1:61716777-61716796 | None:intergenic | 50.0% |
| TGTTGAGTCATGCAAGGTGG+TGG | - | chr5_1:61717269-61717288 | Msa0741920:intron | 50.0% | |
| GGCCTCAGAAGCTGTAGAAT+TGG | - | chr5_1:61717368-61717387 | Msa0741920:intron | 50.0% | |
| TAAGGACGTGACAGTAGCTG+AGG | - | chr5_1:61717518-61717537 | Msa0741920:intron | 50.0% | |
| GACTCCTCAATTCCCTTTGG+AGG | + | chr5_1:61717645-61717664 | None:intergenic | 50.0% | |
| CTCAAAGGCAACACACCTCT+TGG | - | chr5_1:61718008-61718027 | Msa0741920:intron | 50.0% | |
| GCGGACTCTTCGAAATTCTG+AGG | - | chr5_1:61718041-61718060 | Msa0741920:intron | 50.0% | |
| GTTGGGAGCTTGAAGGAGGT+TGG | - | chr5_1:61719157-61719176 | Msa0741920:CDS | 55.0% | |
| GTTGGGAGCTTGAAGGAGGT+TGG | - | chr5_1:61719157-61719176 | Msa0741920:CDS | 55.0% | |
| ACTGCAGTTCTCATGCTGCG+AGG | - | chr5_1:61719318-61719337 | Msa0741920:intron | 55.0% | |
| CTGCAGTTCTCATGCTGCGA+GGG | - | chr5_1:61719319-61719338 | Msa0741920:intron | 55.0% | |
| GGACGTGACAGTAGCTGAGG+AGG | - | chr5_1:61717521-61717540 | Msa0741920:intron | 60.0% | |
| ! | GGAGGTTGGCCCATGAGCAA+AGG | - | chr5_1:61719171-61719190 | Msa0741920:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 61716635 | 61719641 | 61716635 | ID=Msa0741920;Name=Msa0741920 |
| chr5_1 | mRNA | 61716635 | 61719641 | 61716635 | ID=Msa0741920-mRNA-1;Parent=Msa0741920;Name=Msa0741920-mRNA-1;_AED=0.05;_eAED=0.05;_QI=88|1|1|1|0.25|0|5|350|319 |
| chr5_1 | exon | 61716635 | 61716757 | 61716635 | ID=Msa0741920-mRNA-1:exon:17985;Parent=Msa0741920-mRNA-1 |
| chr5_1 | exon | 61716785 | 61717005 | 61716785 | ID=Msa0741920-mRNA-1:exon:17984;Parent=Msa0741920-mRNA-1 |
| chr5_1 | exon | 61718192 | 61718284 | 61718192 | ID=Msa0741920-mRNA-1:exon:17983;Parent=Msa0741920-mRNA-1 |
| chr5_1 | exon | 61718437 | 61719203 | 61718437 | ID=Msa0741920-mRNA-1:exon:17982;Parent=Msa0741920-mRNA-1 |
| chr5_1 | exon | 61719448 | 61719641 | 61719448 | ID=Msa0741920-mRNA-1:exon:17981;Parent=Msa0741920-mRNA-1 |
| chr5_1 | five_prime_UTR | 61719554 | 61719641 | 61719554 | ID=Msa0741920-mRNA-1:five_prime_utr;Parent=Msa0741920-mRNA-1 |
| chr5_1 | CDS | 61719448 | 61719553 | 61719448 | ID=Msa0741920-mRNA-1:cds;Parent=Msa0741920-mRNA-1 |
| chr5_1 | CDS | 61718437 | 61719203 | 61718437 | ID=Msa0741920-mRNA-1:cds;Parent=Msa0741920-mRNA-1 |
| chr5_1 | CDS | 61718198 | 61718284 | 61718198 | ID=Msa0741920-mRNA-1:cds;Parent=Msa0741920-mRNA-1 |
| chr5_1 | three_prime_UTR | 61718192 | 61718197 | 61718192 | ID=Msa0741920-mRNA-1:three_prime_utr;Parent=Msa0741920-mRNA-1 |
| chr5_1 | three_prime_UTR | 61716785 | 61717005 | 61716785 | ID=Msa0741920-mRNA-1:three_prime_utr;Parent=Msa0741920-mRNA-1 |
| chr5_1 | three_prime_UTR | 61716635 | 61716757 | 61716635 | ID=Msa0741920-mRNA-1:three_prime_utr;Parent=Msa0741920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
