Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0862120 | XP_013454381.1 | 83.432 | 338 | 36 | 4 | 1 | 319 | 1 | 337 | 0.0 | 532 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0862120 | A0A072UFG1 | 83.432 | 338 | 36 | 4 | 1 | 319 | 1 | 337 | 0.0 | 532 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0862120 | 0.801177 | 1.018332e-48 | -8.615850e-47 |
| Msa0017930 | Msa0862120 | 0.820312 | 7.332869e-53 | -8.615850e-47 |
| Msa0094780 | Msa0862120 | 0.804333 | 2.272202e-49 | -8.615850e-47 |
| Msa0738240 | Msa0862120 | 0.804216 | 2.403149e-49 | -8.615850e-47 |
| Msa0741920 | Msa0862120 | 0.827938 | 1.186329e-54 | -8.615850e-47 |
| Msa0786280 | Msa0862120 | 0.863501 | 2.379410e-64 | -8.615850e-47 |
| Msa0823100 | Msa0862120 | 0.872278 | 3.595217e-67 | -8.615850e-47 |
| Msa0263230 | Msa0862120 | 0.807248 | 5.546122e-50 | -8.615850e-47 |
| Msa0567380 | Msa0862120 | 0.802419 | 5.662215e-49 | -8.615850e-47 |
| Msa0862120 | Msa1340200 | 0.802167 | 6.377864e-49 | -8.615850e-47 |
| Msa0862120 | Msa1382300 | 0.813956 | 1.968551e-51 | -8.615850e-47 |
| Msa0862120 | Msa1407750 | 0.810606 | 1.060363e-50 | -8.615850e-47 |
| Msa0862120 | Msa1464090 | 0.807041 | 6.135720e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0862120 | MtrunA17_Chr5g0443381 | 84.384 | 333 | 36 | 4 | 1 | 319 | 1 | 331 | 0.0 | 531 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 89 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATAATAATGAAGGATTTA+AGG | 0.221973 | 5_4:-61723184 | Msa0862120:CDS |
| ACAATATGAAAACTGAAATT+TGG | 0.241629 | 5_4:+61721037 | None:intergenic |
| ATCAATATCAACAAAATCTT+TGG | 0.250643 | 5_4:+61723416 | None:intergenic |
| AGCAAGTTGACTGCTTTAAT+AGG | 0.258946 | 5_4:+61721160 | None:intergenic |
| CATGCAACTGAAATGAGTTT+TGG | 0.306374 | 5_4:+61720985 | None:intergenic |
| TAAAAGAACAGGCCTCAAAA+AGG | 0.317516 | 5_4:+61721117 | None:intergenic |
| ATCTGAAAATCATAGCAAAA+TGG | 0.345325 | 5_4:-61723571 | Msa0862120:CDS |
| TACAGCTTTACTGATTGATT+TGG | 0.357160 | 5_4:-61721086 | Msa0862120:three_prime_UTR |
| TGACTCCTTAGCACTTTCAT+AGG | 0.369555 | 5_4:+61722933 | None:intergenic |
| GTGGATAAATAAACAAATAA+AGG | 0.379814 | 5_4:+61724001 | None:intergenic |
| GGCCTCAGAAGCTGTAGAAT+TGG | 0.384608 | 5_4:-61723289 | Msa0862120:CDS |
| GCAAGTTGACTGCTTTAATA+GGG | 0.387804 | 5_4:+61721161 | None:intergenic |
| GTTAACTTCTATTGCATCAC+TGG | 0.396043 | 5_4:+61723329 | None:intergenic |
| CCACCTCATCATTATCTTCA+AGG | 0.400815 | 5_4:+61723232 | None:intergenic |
| AATGACTCCTCAATTCCCTT+TGG | 0.431098 | 5_4:+61723012 | None:intergenic |
| CTCAAAGGCAACACACCTCT+TGG | 0.437333 | 5_4:-61722641 | Msa0862120:CDS |
| CTGCAGTTCTCATGCTGGGA+GGG | 0.450174 | 5_4:-61721186 | Msa0862120:three_prime_UTR |
| AGATTCATTAAGTGAAGATA+AGG | 0.458262 | 5_4:-61723502 | Msa0862120:CDS |
| GTTGGGCAGAGTCAAAGGTT+TGG | 0.462169 | 5_4:+61723892 | None:intergenic |
| AGGCCATCTTATTCTCAACT+TGG | 0.469285 | 5_4:+61723307 | None:intergenic |
| TGCTTTGGAGACAAGTGGTA+AGG | 0.469917 | 5_4:-61723067 | Msa0862120:CDS |
| GTAAGAAAACGTAAAAGAAC+AGG | 0.473028 | 5_4:+61721106 | None:intergenic |
| AAAGGGAATTGAGGAGTCAT+TGG | 0.475443 | 5_4:-61723010 | Msa0862120:CDS |
| CCTCGATATACCTTTGCTCA+TGG | 0.486617 | 5_4:+61721211 | None:intergenic |
| AATGAAACCACATCAGTTGA+AGG | 0.488510 | 5_4:+61723102 | None:intergenic |
| TATGAAAACTGAAATTTGGT+AGG | 0.490910 | 5_4:+61721041 | None:intergenic |
| CTCTTTGAAATTCTGAGGCA+TGG | 0.493717 | 5_4:-61722603 | Msa0862120:CDS |
| GGCACTGCAGTTCTCATGCT+GGG | 0.495434 | 5_4:-61721190 | Msa0862120:three_prime_UTR |
| TCTAGAGGCATTGAAAATCA+AGG | 0.497245 | 5_4:-61722841 | Msa0862120:CDS |
| CTCGATATACCTTTGCTCAT+GGG | 0.498809 | 5_4:+61721212 | None:intergenic |
| AACATTGCATGAAACTCAAA+AGG | 0.501815 | 5_4:-61723532 | Msa0862120:CDS |
| GACTCCTCAATTCCCTTTGG+AGG | 0.504945 | 5_4:+61723015 | None:intergenic |
| TGTTGGTTGGGCAGAGTCAA+AGG | 0.507031 | 5_4:+61723887 | None:intergenic |
| GTAGGTGAAGAGTGTTGGTT+GGG | 0.507556 | 5_4:+61723875 | None:intergenic |
| AATAAACAAATAAAGGAGAA+TGG | 0.511031 | 5_4:+61724008 | None:intergenic |
| TTGGAATTGAATGATGAGAA+AGG | 0.511441 | 5_4:-61723270 | Msa0862120:CDS |
| TCAAATAGTTGGGAGCTTGA+AGG | 0.524609 | 5_4:-61721242 | Msa0862120:intron |
| AGGCACTGCAGTTCTCATGC+TGG | 0.525944 | 5_4:-61721191 | Msa0862120:three_prime_UTR |
| TGTTCCTCCAAAGGGAATTG+AGG | 0.527183 | 5_4:-61723019 | Msa0862120:CDS |
| GTTGGGAGCTTGAAGGAGGT+TGG | 0.528065 | 5_4:-61721235 | Msa0862120:three_prime_UTR |
| TGAAGCGGTTGAAACAGTTA+AGG | 0.534704 | 5_4:-61723157 | Msa0862120:CDS |
| GCGGACTCTTTGAAATTCTG+AGG | 0.535370 | 5_4:-61722608 | Msa0862120:CDS |
| ACTTCAAAGGATAATAATGA+AGG | 0.536408 | 5_4:-61723192 | Msa0862120:CDS |
| TGAAGATAATGATGAGGTGG+AGG | 0.538135 | 5_4:-61723229 | Msa0862120:CDS |
| CACCTCATCATTATCTTCAA+GGG | 0.545624 | 5_4:+61723233 | None:intergenic |
| TGGGTTTGTAGTTGAACAGT+AGG | 0.549277 | 5_4:+61723857 | None:intergenic |
| TTCATTAAGTGAAGATAAGG+AGG | 0.550055 | 5_4:-61723499 | Msa0862120:CDS |
| TTTGGTATCACTGATAGACT+TGG | 0.551465 | 5_4:+61723434 | None:intergenic |
| AAAATGGAAGGAAATTTGAA+TGG | 0.553733 | 5_4:-61723555 | Msa0862120:CDS |
| GAACAGTAGGTGAAGAGTGT+TGG | 0.557856 | 5_4:+61723870 | None:intergenic |
| AATTGATGATGAGGGTGAAA+AGG | 0.558460 | 5_4:-61723043 | Msa0862120:CDS |
| TAACCAAGTTGAGAATAAGA+TGG | 0.563805 | 5_4:-61723310 | Msa0862120:CDS |
| GCATGGTGATAGATAAATCA+AGG | 0.565697 | 5_4:-61722586 | Msa0862120:intron |
| CTAGAGGCATTGAAAATCAA+GGG | 0.566438 | 5_4:-61722840 | Msa0862120:CDS |
| TTCCAATTCTACAGCTTCTG+AGG | 0.567350 | 5_4:+61723287 | None:intergenic |
| GGACATGACAGTAGCTGAGG+AGG | 0.567686 | 5_4:-61723136 | Msa0862120:CDS |
| GAAAAGGTTGTTCCTCCAAA+GGG | 0.568369 | 5_4:-61723027 | Msa0862120:CDS |
| TGTTGAGTCATGCAAGGTGG+TGG | 0.568757 | 5_4:-61723388 | Msa0862120:CDS |
| GCTTTGGAGACAAGTGGTAA+GGG | 0.569139 | 5_4:-61723066 | Msa0862120:CDS |
| ATGAAAACTGAAATTTGGTA+GGG | 0.571179 | 5_4:+61721042 | None:intergenic |
| TCTGCTGATGATGATTATGA+TGG | 0.574692 | 5_4:-61723462 | Msa0862120:CDS |
| TGAAAAGGTTGTTCCTCCAA+AGG | 0.575350 | 5_4:-61723028 | Msa0862120:CDS |
| AGTAGGTGAAGAGTGTTGGT+TGG | 0.576236 | 5_4:+61723874 | None:intergenic |
| GTTTGTTACTTCGAATAATG+CGG | 0.576414 | 5_4:+61720956 | None:intergenic |
| TGTTCCTCAACTTTCTCATG+TGG | 0.584942 | 5_4:+61722979 | None:intergenic |
| ACCTCTTGGAAGAATTGTTG+CGG | 0.585031 | 5_4:-61722627 | Msa0862120:CDS |
| ATCATCCTATGAAAGTGCTA+AGG | 0.585651 | 5_4:-61722938 | Msa0862120:CDS |
| GTATAGGCATGGTTACTGAC+TGG | 0.588901 | 5_4:+61723951 | None:intergenic |
| GAAAATCATAGCAAAATGGA+AGG | 0.594613 | 5_4:-61723567 | Msa0862120:CDS |
| TAAGGACATGACAGTAGCTG+AGG | 0.602185 | 5_4:-61723139 | Msa0862120:CDS |
| AGGATTTAAGGTAACTGAAG+CGG | 0.605575 | 5_4:-61723172 | Msa0862120:CDS |
| AACTGAATTAGCTACTTCAA+AGG | 0.610607 | 5_4:-61723205 | Msa0862120:CDS |
| GGAGGTTGGCCCATGAGCAA+AGG | 0.613149 | 5_4:-61721221 | Msa0862120:three_prime_UTR |
| CCTTGAAGATAATGATGAGG+TGG | 0.613497 | 5_4:-61723232 | Msa0862120:CDS |
| AATAGTTGGGAGCTTGAAGG+AGG | 0.616938 | 5_4:-61721239 | Msa0862120:intron |
| GAAGTTGCTTTGGAGACAAG+TGG | 0.618201 | 5_4:-61723072 | Msa0862120:CDS |
| ACTGCAGTTCTCATGCTGGG+AGG | 0.621412 | 5_4:-61721187 | Msa0862120:three_prime_UTR |
| TCCGCAACAATTCTTCCAAG+AGG | 0.641763 | 5_4:+61722626 | None:intergenic |
| ATCTCCACATGAGAAAGTTG+AGG | 0.648381 | 5_4:-61722983 | Msa0862120:CDS |
| ACTGTTCAACTACAAACCCA+AGG | 0.650999 | 5_4:-61723854 | Msa0862120:intron |
| ATCCCTTGAAGATAATGATG+AGG | 0.651217 | 5_4:-61723235 | Msa0862120:CDS |
| GGTAAGGGAATTGATGATGA+GGG | 0.658471 | 5_4:-61723051 | Msa0862120:CDS |
| TAGAGGCATTGAAAATCAAG+GGG | 0.660240 | 5_4:-61722839 | Msa0862120:intron |
| TGGTAAGGGAATTGATGATG+AGG | 0.669864 | 5_4:-61723052 | Msa0862120:CDS |
| CCATGAGCAAAGGTATATCG+AGG | 0.675397 | 5_4:-61721211 | Msa0862120:three_prime_UTR |
| TGATTGATTTGGTTTCAAAG+TGG | 0.691411 | 5_4:-61721075 | Msa0862120:three_prime_UTR |
| GACACGATTGAAGAATCTAG+AGG | 0.692176 | 5_4:-61722856 | Msa0862120:CDS |
| TGAACATGTTGAGTCATGCA+AGG | 0.711218 | 5_4:-61723394 | Msa0862120:CDS |
| ACATGTTGAGTCATGCAAGG+TGG | 0.794332 | 5_4:-61723391 | Msa0862120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTATAGTAATATGA+GGG | + | chr5_4:61722457-61722476 | None:intergenic | 10.0% |
| !!! | ATATTTTTTATAGTAATATG+AGG | + | chr5_4:61722458-61722477 | None:intergenic | 10.0% |
| !!! | AATAGTTTTTCTTTTTTATA+TGG | - | chr5_4:61722599-61722618 | Msa0862120:CDS | 10.0% |
| !!! | TTTTTCTTTCAATAACAAAT+TGG | - | chr5_4:61721228-61721247 | Msa0862120:three_prime_UTR | 15.0% |
| !!! | ACTAACATGTTTTAATTAAA+AGG | - | chr5_4:61722388-61722407 | Msa0862120:intron | 15.0% |
| !! | AAAAGAAAAACTATTTAACA+AGG | + | chr5_4:61722594-61722613 | None:intergenic | 15.0% |
| !! | TTATAGTAATCTAAAAATGT+GGG | - | chr5_4:61722709-61722728 | Msa0862120:intron | 15.0% |
| !! | AATCAAAAAAAAATAATCAC+AGG | + | chr5_4:61723652-61723671 | None:intergenic | 15.0% |
| !!! | TTTTTTTTGATTCAAATAGT+TGG | - | chr5_4:61723660-61723679 | Msa0862120:intron | 15.0% |
| !!! | TTTTTTTGATTCAAATAGTT+GGG | - | chr5_4:61723661-61723680 | Msa0862120:intron | 15.0% |
| !!! | TCCTAATTATGATATTTTTA+TGG | - | chr5_4:61724004-61724023 | Msa0862120:five_prime_UTR | 15.0% |
| !! | TCCATAAAAATATCATAATT+AGG | + | chr5_4:61724008-61724027 | None:intergenic | 15.0% |
| !! | AATAAACAAATAAAGGAGAA+TGG | + | chr5_4:61720908-61720927 | None:intergenic | 20.0% |
| !! | GTGGATAAATAAACAAATAA+AGG | + | chr5_4:61720915-61720934 | None:intergenic | 20.0% |
| !! | GTAACAATTATTGAAAACAT+AGG | + | chr5_4:61721179-61721198 | None:intergenic | 20.0% |
| !!! | TGTTTTTTTTTTTTATCAGC+AGG | - | chr5_4:61721310-61721329 | Msa0862120:intron | 20.0% |
| !! | ATCAATATCAACAAAATCTT+TGG | + | chr5_4:61721500-61721519 | None:intergenic | 20.0% |
| !! | GAAAATAAAATCCTAAACTA+AGG | + | chr5_4:61722362-61722381 | None:intergenic | 20.0% |
| !! | ATTACTATAACAAAGTAACT+AGG | + | chr5_4:61722699-61722718 | None:intergenic | 20.0% |
| !! | GTTATAGTAATCTAAAAATG+TGG | - | chr5_4:61722708-61722727 | Msa0862120:intron | 20.0% |
| !!! | ATATTTTCAATAGATTCTCT+TGG | - | chr5_4:61722762-61722781 | Msa0862120:intron | 20.0% |
| !!! | TTAAGTTTAAAATTGTGCAT+TGG | + | chr5_4:61723331-61723350 | None:intergenic | 20.0% |
| !! | ATAGTGCAAATATTCTAAAT+AGG | - | chr5_4:61723490-61723509 | Msa0862120:CDS | 20.0% |
| !! | ACAATATGAAAACTGAAATT+TGG | + | chr5_4:61723879-61723898 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTCTTGAAGGTAT+AGG | + | chr5_4:61720981-61721000 | None:intergenic | 25.0% |
| !!! | TGCTTTGTTTTTTTTCTTGA+AGG | + | chr5_4:61720987-61721006 | None:intergenic | 25.0% |
| ! | AACAAAGAAACAACAAAAAG+AGG | + | chr5_4:61721120-61721139 | None:intergenic | 25.0% |
| ! | GAAAAACAAAGAAAACATGA+GGG | + | chr5_4:61721214-61721233 | None:intergenic | 25.0% |
| ! | AGAAAAACAAAGAAAACATG+AGG | + | chr5_4:61721215-61721234 | None:intergenic | 25.0% |
| !! | AATTAGATCTTTTCCACATA+TGG | - | chr5_4:61721259-61721278 | Msa0862120:intron | 25.0% |
| ! | ATAGAGATATATACCATATG+TGG | + | chr5_4:61721275-61721294 | None:intergenic | 25.0% |
| ! | ATATGGTATATATCTCTATG+TGG | - | chr5_4:61721276-61721295 | Msa0862120:intron | 25.0% |
| ! | ATCTGAAAATCATAGCAAAA+TGG | - | chr5_4:61721342-61721361 | Msa0862120:intron | 25.0% |
| ! | AAAATGGAAGGAAATTTGAA+TGG | - | chr5_4:61721358-61721377 | Msa0862120:intron | 25.0% |
| ! | AGATTCATTAAGTGAAGATA+AGG | - | chr5_4:61721411-61721430 | Msa0862120:intron | 25.0% |
| ! | ACTTCAAAGGATAATAATGA+AGG | - | chr5_4:61721721-61721740 | Msa0862120:intron | 25.0% |
| ! | GGATAATAATGAAGGATTTA+AGG | - | chr5_4:61721729-61721748 | Msa0862120:intron | 25.0% |
| ! | ATTGTTAATCAAACTTTGGT+TGG | + | chr5_4:61722490-61722509 | None:intergenic | 25.0% |
| ! | ATGCATTGTTAATCAAACTT+TGG | + | chr5_4:61722494-61722513 | None:intergenic | 25.0% |
| !! | CAATGCATTTTATGTCAATA+TGG | - | chr5_4:61722506-61722525 | Msa0862120:intron | 25.0% |
| ! | TTTAACAAGGAATGTTTAAC+TGG | + | chr5_4:61722581-61722600 | None:intergenic | 25.0% |
| !!! | AGTTTTTTGAACCTCTAAAA+GGG | + | chr5_4:61722650-61722669 | None:intergenic | 25.0% |
| ! | TAGATATTTGACTAGACTTT+AGG | + | chr5_4:61722799-61722818 | None:intergenic | 25.0% |
| !! | AATGATGAGATGTTTAAGTT+TGG | + | chr5_4:61722899-61722918 | None:intergenic | 25.0% |
| ! | CAAAGTTAACTTAAATCGAT+AGG | - | chr5_4:61723063-61723082 | Msa0862120:CDS | 25.0% |
| ! | TAATGAAATGTGACAATTCA+TGG | + | chr5_4:61723171-61723190 | None:intergenic | 25.0% |
| !! | AATTTAGAGGATGAACTTTT+TGG | - | chr5_4:61723225-61723244 | Msa0862120:CDS | 25.0% |
| ! | TCTAAATAGGTCAAGTAATA+TGG | - | chr5_4:61723503-61723522 | Msa0862120:CDS | 25.0% |
| ! | CTAAATAGGTCAAGTAATAT+GGG | - | chr5_4:61723504-61723523 | Msa0862120:CDS | 25.0% |
| ! | ATGAAAACTGAAATTTGGTA+GGG | + | chr5_4:61723874-61723893 | None:intergenic | 25.0% |
| ! | TATGAAAACTGAAATTTGGT+AGG | + | chr5_4:61723875-61723894 | None:intergenic | 25.0% |
| ! | TTGTAAACTACAATAAACCA+CGG | - | chr5_4:61723895-61723914 | Msa0862120:CDS | 25.0% |
| AGAAACAACAAAAAGAGGTT+GGG | + | chr5_4:61721115-61721134 | None:intergenic | 30.0% | |
| AAGAAACAACAAAAAGAGGT+TGG | + | chr5_4:61721116-61721135 | None:intergenic | 30.0% | |
| TAGTTTACTACATCCTTGTA+TGG | - | chr5_4:61721150-61721169 | Msa0862120:three_prime_UTR | 30.0% | |
| AAAACATAGGATACCATACA+AGG | + | chr5_4:61721166-61721185 | None:intergenic | 30.0% | |
| GAAAATCATAGCAAAATGGA+AGG | - | chr5_4:61721346-61721365 | Msa0862120:intron | 30.0% | |
| AACATTGCATGAAACTCAAA+AGG | - | chr5_4:61721381-61721400 | Msa0862120:intron | 30.0% | |
| TTCATTAAGTGAAGATAAGG+AGG | - | chr5_4:61721414-61721433 | Msa0862120:intron | 30.0% | |
| ! | TAACCAAGTTGAGAATAAGA+TGG | - | chr5_4:61721603-61721622 | Msa0862120:intron | 30.0% |
| TTGGAATTGAATGATGAGAA+AGG | - | chr5_4:61721643-61721662 | Msa0862120:intron | 30.0% | |
| AACTGAATTAGCTACTTCAA+AGG | - | chr5_4:61721708-61721727 | Msa0862120:intron | 30.0% | |
| ! | TGATGTGGTTTCATTTTCAA+GGG | - | chr5_4:61721819-61721838 | Msa0862120:intron | 30.0% |
| AACATGTTGAAACAGATGTA+GGG | - | chr5_4:61722411-61722430 | Msa0862120:intron | 30.0% | |
| GTCAATATGGTCAAAATTGT+TGG | - | chr5_4:61722519-61722538 | Msa0862120:intron | 30.0% | |
| !!! | CAGTTTTTTGAACCTCTAAA+AGG | + | chr5_4:61722651-61722670 | None:intergenic | 30.0% |
| TTGGTTATTGACCAATCTTT+GGG | + | chr5_4:61722880-61722899 | None:intergenic | 30.0% | |
| TTTGGTTATTGACCAATCTT+TGG | + | chr5_4:61722881-61722900 | None:intergenic | 30.0% | |
| TCCCTAAAATTGTAAAACAC+CGG | - | chr5_4:61722979-61722998 | Msa0862120:CDS | 30.0% | |
| ! | ACCGGTGTTTTACAATTTTA+GGG | + | chr5_4:61722983-61723002 | None:intergenic | 30.0% |
| ! | AACCGGTGTTTTACAATTTT+AGG | + | chr5_4:61722984-61723003 | None:intergenic | 30.0% |
| AAACCAAGGATGAATTTAAC+CGG | + | chr5_4:61723001-61723020 | None:intergenic | 30.0% | |
| ATTGCTAATTCGTAAAACCA+AGG | + | chr5_4:61723015-61723034 | None:intergenic | 30.0% | |
| TGGATTGACGTTAAAATCTT+CGG | - | chr5_4:61723245-61723264 | Msa0862120:CDS | 30.0% | |
| TCAACTAGGTCAAGTAATAT+GGG | + | chr5_4:61723294-61723313 | None:intergenic | 30.0% | |
| GTAAGAAAACGTAAAAGAAC+AGG | + | chr5_4:61723810-61723829 | None:intergenic | 30.0% | |
| ! | TACAGCTTTACTGATTGATT+TGG | - | chr5_4:61723827-61723846 | Msa0862120:intron | 30.0% |
| !! | TGATTGATTTGGTTTCAAAG+TGG | - | chr5_4:61723838-61723857 | Msa0862120:intron | 30.0% |
| TGTAAACTACAATAAACCAC+GGG | - | chr5_4:61723896-61723915 | Msa0862120:CDS | 30.0% | |
| ! | GTTTGTTACTTCGAATAATG+CGG | + | chr5_4:61723960-61723979 | None:intergenic | 30.0% |
| !! | TTGTTTTGTGAAGAGAATGG+TGG | + | chr5_4:61720934-61720953 | None:intergenic | 35.0% |
| !!! | GCTTTGTTTTGTGAAGAGAA+TGG | + | chr5_4:61720937-61720956 | None:intergenic | 35.0% |
| !! | TTTTCTTGAAGGTATAGGCA+TGG | + | chr5_4:61720976-61720995 | None:intergenic | 35.0% |
| !!! | CAAAGGTTTGGTTTTGTTCT+TGG | + | chr5_4:61721012-61721031 | None:intergenic | 35.0% |
| AGAAAACATGAGGGTTTGAA+AGG | + | chr5_4:61721205-61721224 | None:intergenic | 35.0% | |
| ! | TCTGCTGATGATGATTATGA+TGG | - | chr5_4:61721451-61721470 | Msa0862120:intron | 35.0% |
| TTTGGTATCACTGATAGACT+TGG | + | chr5_4:61721482-61721501 | None:intergenic | 35.0% | |
| GTTAACTTCTATTGCATCAC+TGG | + | chr5_4:61721587-61721606 | None:intergenic | 35.0% | |
| ATCCCTTGAAGATAATGATG+AGG | - | chr5_4:61721678-61721697 | Msa0862120:intron | 35.0% | |
| CACCTCATCATTATCTTCAA+GGG | + | chr5_4:61721683-61721702 | None:intergenic | 35.0% | |
| ! | AGGATTTAAGGTAACTGAAG+CGG | - | chr5_4:61721741-61721760 | Msa0862120:intron | 35.0% |
| AATGAAACCACATCAGTTGA+AGG | + | chr5_4:61721814-61721833 | None:intergenic | 35.0% | |
| ! | CTGATGTGGTTTCATTTTCA+AGG | - | chr5_4:61721818-61721837 | Msa0862120:intron | 35.0% |
| !! | ATTTTCAAGGGAAGTTGCTT+TGG | - | chr5_4:61721831-61721850 | Msa0862120:intron | 35.0% |
| !! | AATTGATGATGAGGGTGAAA+AGG | - | chr5_4:61721870-61721889 | Msa0862120:intron | 35.0% |
| !! | ATCATCCTATGAAAGTGCTA+AGG | - | chr5_4:61721975-61721994 | Msa0862120:intron | 35.0% |
| !! | TCTAGAGGCATTGAAAATCA+AGG | - | chr5_4:61722072-61722091 | Msa0862120:intron | 35.0% |
| !! | CTAGAGGCATTGAAAATCAA+GGG | - | chr5_4:61722073-61722092 | Msa0862120:intron | 35.0% |
| !! | TAGAGGCATTGAAAATCAAG+GGG | - | chr5_4:61722074-61722093 | Msa0862120:intron | 35.0% |
| CTGTCACAAAAGAAAGAAGA+AGG | + | chr5_4:61722236-61722255 | None:intergenic | 35.0% | |
| GCATGGTGATAGATAAATCA+AGG | - | chr5_4:61722327-61722346 | Msa0862120:intron | 35.0% | |
| GGTGAGTAAAACCTTAGTTT+AGG | - | chr5_4:61722348-61722367 | Msa0862120:intron | 35.0% | |
| GAACATGTTGAAACAGATGT+AGG | - | chr5_4:61722410-61722429 | Msa0862120:intron | 35.0% | |
| AACTTGTGAACCAAACTTGT+TGG | - | chr5_4:61722846-61722865 | Msa0862120:CDS | 35.0% | |
| ! | ACTTGTGAACCAAACTTGTT+GGG | - | chr5_4:61722847-61722866 | Msa0862120:CDS | 35.0% |
| ACAGTCCAATCTTGAACTTA+GGG | + | chr5_4:61722936-61722955 | None:intergenic | 35.0% | |
| AACAGTCCAATCTTGAACTT+AGG | + | chr5_4:61722937-61722956 | None:intergenic | 35.0% | |
| ACTTAAATCGATAGGCAACA+TGG | - | chr5_4:61723071-61723090 | Msa0862120:CDS | 35.0% | |
| CGGCATGTTAAATAAAGATG+TGG | - | chr5_4:61723096-61723115 | Msa0862120:CDS | 35.0% | |
| AAACTTGCAACATGTTGTCT+AGG | - | chr5_4:61723197-61723216 | Msa0862120:CDS | 35.0% | |
| AACTTGCAACATGTTGTCTA+GGG | - | chr5_4:61723198-61723217 | Msa0862120:CDS | 35.0% | |
| GTCAACTAGGTCAAGTAATA+TGG | + | chr5_4:61723295-61723314 | None:intergenic | 35.0% | |
| ATAGGTCAAGTAATATGGGA+CGG | - | chr5_4:61723508-61723527 | Msa0862120:CDS | 35.0% | |
| CAAGACAGATTAGATTATGC+AGG | + | chr5_4:61723569-61723588 | None:intergenic | 35.0% | |
| AGCTAAATTAAGCTCTTGAG+TGG | - | chr5_4:61723607-61723626 | Msa0862120:intron | 35.0% | |
| ! | GCAAGTTGACTGCTTTAATA+GGG | + | chr5_4:61723755-61723774 | None:intergenic | 35.0% |
| ! | AGCAAGTTGACTGCTTTAAT+AGG | + | chr5_4:61723756-61723775 | None:intergenic | 35.0% |
| ! | TTGATTTTGAGCCCTTTTTG+AGG | - | chr5_4:61723784-61723803 | Msa0862120:intron | 35.0% |
| AAAAGAACAGGCCTCAAAAA+GGG | + | chr5_4:61723798-61723817 | None:intergenic | 35.0% | |
| TAAAAGAACAGGCCTCAAAA+AGG | + | chr5_4:61723799-61723818 | None:intergenic | 35.0% | |
| ! | CATGCAACTGAAATGAGTTT+TGG | + | chr5_4:61723931-61723950 | None:intergenic | 35.0% |
| TGGGTTTGTAGTTGAACAGT+AGG | + | chr5_4:61721059-61721078 | None:intergenic | 40.0% | |
| ACTGTTCAACTACAAACCCA+AGG | - | chr5_4:61721059-61721078 | Msa0862120:three_prime_UTR | 40.0% | |
| CAACAAAAAGAGGTTGGGAA+AGG | + | chr5_4:61721110-61721129 | None:intergenic | 40.0% | |
| TGAACATGTTGAGTCATGCA+AGG | - | chr5_4:61721519-61721538 | Msa0862120:intron | 40.0% | |
| AGGCCATCTTATTCTCAACT+TGG | + | chr5_4:61721609-61721628 | None:intergenic | 40.0% | |
| TTCCAATTCTACAGCTTCTG+AGG | + | chr5_4:61721629-61721648 | None:intergenic | 40.0% | |
| CCACCTCATCATTATCTTCA+AGG | + | chr5_4:61721684-61721703 | None:intergenic | 40.0% | |
| CCTTGAAGATAATGATGAGG+TGG | - | chr5_4:61721681-61721700 | Msa0862120:intron | 40.0% | |
| TGAAGATAATGATGAGGTGG+AGG | - | chr5_4:61721684-61721703 | Msa0862120:intron | 40.0% | |
| TGAAGCGGTTGAAACAGTTA+AGG | - | chr5_4:61721756-61721775 | Msa0862120:intron | 40.0% | |
| ! | TGTTTTGCCTTCAACTGATG+TGG | - | chr5_4:61721804-61721823 | Msa0862120:intron | 40.0% |
| !! | TGGTAAGGGAATTGATGATG+AGG | - | chr5_4:61721861-61721880 | Msa0862120:intron | 40.0% |
| !! | GGTAAGGGAATTGATGATGA+GGG | - | chr5_4:61721862-61721881 | Msa0862120:intron | 40.0% |
| TGAAAAGGTTGTTCCTCCAA+AGG | - | chr5_4:61721885-61721904 | Msa0862120:intron | 40.0% | |
| GAAAAGGTTGTTCCTCCAAA+GGG | - | chr5_4:61721886-61721905 | Msa0862120:intron | 40.0% | |
| AATGACTCCTCAATTCCCTT+TGG | + | chr5_4:61721904-61721923 | None:intergenic | 40.0% | |
| AAAGGGAATTGAGGAGTCAT+TGG | - | chr5_4:61721903-61721922 | Msa0862120:intron | 40.0% | |
| ATCTCCACATGAGAAAGTTG+AGG | - | chr5_4:61721930-61721949 | Msa0862120:intron | 40.0% | |
| TGTTCCTCAACTTTCTCATG+TGG | + | chr5_4:61721937-61721956 | None:intergenic | 40.0% | |
| TGACTCCTTAGCACTTTCAT+AGG | + | chr5_4:61721983-61722002 | None:intergenic | 40.0% | |
| GACACGATTGAAGAATCTAG+AGG | - | chr5_4:61722057-61722076 | Msa0862120:intron | 40.0% | |
| !! | GCATTTTTGCTGTGACTCAA+AGG | - | chr5_4:61722257-61722276 | Msa0862120:intron | 40.0% |
| ACCTCTTGGAAGAATTGTTG+CGG | - | chr5_4:61722286-61722305 | Msa0862120:intron | 40.0% | |
| !! | CTCTTTGAAATTCTGAGGCA+TGG | - | chr5_4:61722310-61722329 | Msa0862120:intron | 40.0% |
| GAGGGTAATTGACACAAAGT+TGG | + | chr5_4:61722439-61722458 | None:intergenic | 40.0% | |
| ! | CTGATTGATCACCCTTTTAG+AGG | - | chr5_4:61722636-61722655 | Msa0862120:CDS | 40.0% |
| TTTCCCCCTAAGTTCAAGAT+TGG | - | chr5_4:61722928-61722947 | Msa0862120:CDS | 40.0% | |
| AGTCCAATCTTGAACTTAGG+GGG | + | chr5_4:61722934-61722953 | None:intergenic | 40.0% | |
| CAGTCCAATCTTGAACTTAG+GGG | + | chr5_4:61722935-61722954 | None:intergenic | 40.0% | |
| ! | ACACCGGTTAAATTCATCCT+TGG | - | chr5_4:61722995-61723014 | Msa0862120:CDS | 40.0% |
| AGTGAAGTGTGGAGTCTATA+TGG | + | chr5_4:61723126-61723145 | None:intergenic | 40.0% | |
| AATGAAGTCGTAGTGAAGTG+TGG | + | chr5_4:61723137-61723156 | None:intergenic | 40.0% | |
| CACTTCACTACGACTTCATT+AGG | - | chr5_4:61723137-61723156 | Msa0862120:CDS | 40.0% | |
| TGTCTAGGGACTGAATTTAG+AGG | - | chr5_4:61723212-61723231 | Msa0862120:CDS | 40.0% | |
| CTAGGTCAAGTAATATGGGA+CGG | + | chr5_4:61723290-61723309 | None:intergenic | 40.0% | |
| TCAAATAGTTGGGAGCTTGA+AGG | - | chr5_4:61723671-61723690 | Msa0862120:intron | 40.0% | |
| CTCGATATACCTTTGCTCAT+GGG | + | chr5_4:61723704-61723723 | None:intergenic | 40.0% | |
| !! | GTTTTGGACTAAATAACCCG+TGG | + | chr5_4:61723915-61723934 | None:intergenic | 40.0% |
| GTATAGGCATGGTTACTGAC+TGG | + | chr5_4:61720965-61720984 | None:intergenic | 45.0% | |
| !! | GTAGGTGAAGAGTGTTGGTT+GGG | + | chr5_4:61721041-61721060 | None:intergenic | 45.0% |
| !! | AGTAGGTGAAGAGTGTTGGT+TGG | + | chr5_4:61721042-61721061 | None:intergenic | 45.0% |
| ! | GAACAGTAGGTGAAGAGTGT+TGG | + | chr5_4:61721046-61721065 | None:intergenic | 45.0% |
| GAGAGAGTGATGACTACCTT+GGG | + | chr5_4:61721078-61721097 | None:intergenic | 45.0% | |
| AGAGAGAGTGATGACTACCT+TGG | + | chr5_4:61721079-61721098 | None:intergenic | 45.0% | |
| AAGAGGTTGGGAAAGGTAGA+TGG | + | chr5_4:61721103-61721122 | None:intergenic | 45.0% | |
| ACATGTTGAGTCATGCAAGG+TGG | - | chr5_4:61721522-61721541 | Msa0862120:intron | 45.0% | |
| TAAGGACATGACAGTAGCTG+AGG | - | chr5_4:61721774-61721793 | Msa0862120:intron | 45.0% | |
| !! | GAAGTTGCTTTGGAGACAAG+TGG | - | chr5_4:61721841-61721860 | Msa0862120:intron | 45.0% |
| !! | TGCTTTGGAGACAAGTGGTA+AGG | - | chr5_4:61721846-61721865 | Msa0862120:intron | 45.0% |
| !! | GCTTTGGAGACAAGTGGTAA+GGG | - | chr5_4:61721847-61721866 | Msa0862120:intron | 45.0% |
| TGTTCCTCCAAAGGGAATTG+AGG | - | chr5_4:61721894-61721913 | Msa0862120:intron | 45.0% | |
| TCCGCAACAATTCTTCCAAG+AGG | + | chr5_4:61722290-61722309 | None:intergenic | 45.0% | |
| !! | GCGGACTCTTTGAAATTCTG+AGG | - | chr5_4:61722305-61722324 | Msa0862120:intron | 45.0% |
| GGTAGAAGACCCAACAAGTT+TGG | + | chr5_4:61722859-61722878 | None:intergenic | 45.0% | |
| TGGGTCTTCTACCCAAAGAT+TGG | - | chr5_4:61722866-61722885 | Msa0862120:CDS | 45.0% | |
| AATCGATAGGCAACATGGCA+CGG | - | chr5_4:61723076-61723095 | Msa0862120:CDS | 45.0% | |
| ! | GACGGAGGGAGTAACAATTT+TGG | + | chr5_4:61723272-61723291 | None:intergenic | 45.0% |
| GTCAAGTAATATGGGACGGA+GGG | + | chr5_4:61723512-61723531 | None:intergenic | 45.0% | |
| CATACGTGACAGAGTCAACT+AGG | + | chr5_4:61723308-61723327 | None:intergenic | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | - | chr5_4:61723512-61723531 | Msa0862120:CDS | 45.0% | |
| GCAGGCAGCATATTGTGAAT+AGG | + | chr5_4:61723551-61723570 | None:intergenic | 45.0% | |
| AATAGTTGGGAGCTTGAAGG+AGG | - | chr5_4:61723674-61723693 | Msa0862120:intron | 45.0% | |
| CCTCGATATACCTTTGCTCA+TGG | + | chr5_4:61723705-61723724 | None:intergenic | 45.0% | |
| ! | CCATGAGCAAAGGTATATCG+AGG | - | chr5_4:61723702-61723721 | Msa0862120:intron | 45.0% |
| GTTGGGCAGAGTCAAAGGTT+TGG | + | chr5_4:61721024-61721043 | None:intergenic | 50.0% | |
| ! | TGTTGGTTGGGCAGAGTCAA+AGG | + | chr5_4:61721029-61721048 | None:intergenic | 50.0% |
| TGTTGAGTCATGCAAGGTGG+TGG | - | chr5_4:61721525-61721544 | Msa0862120:intron | 50.0% | |
| GGCCTCAGAAGCTGTAGAAT+TGG | - | chr5_4:61721624-61721643 | Msa0862120:intron | 50.0% | |
| GACTCCTCAATTCCCTTTGG+AGG | + | chr5_4:61721901-61721920 | None:intergenic | 50.0% | |
| CTCAAAGGCAACACACCTCT+TGG | - | chr5_4:61722272-61722291 | Msa0862120:intron | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | + | chr5_4:61723511-61723530 | None:intergenic | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | - | chr5_4:61723511-61723530 | Msa0862120:CDS | 50.0% | |
| GGACATGACAGTAGCTGAGG+AGG | - | chr5_4:61721777-61721796 | Msa0862120:intron | 55.0% | |
| GTTGGGAGCTTGAAGGAGGT+TGG | - | chr5_4:61723678-61723697 | Msa0862120:intron | 55.0% | |
| ! | AGGCACTGCAGTTCTCATGC+TGG | - | chr5_4:61723722-61723741 | Msa0862120:intron | 55.0% |
| GGCACTGCAGTTCTCATGCT+GGG | - | chr5_4:61723723-61723742 | Msa0862120:intron | 55.0% | |
| ACTGCAGTTCTCATGCTGGG+AGG | - | chr5_4:61723726-61723745 | Msa0862120:intron | 55.0% | |
| CTGCAGTTCTCATGCTGGGA+GGG | - | chr5_4:61723727-61723746 | Msa0862120:intron | 55.0% | |
| ! | GGAGGTTGGCCCATGAGCAA+AGG | - | chr5_4:61723692-61723711 | Msa0862120:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 61720887 | 61724048 | 61720887 | ID=Msa0862120;Name=Msa0862120 |
| chr5_4 | mRNA | 61720887 | 61724048 | 61720887 | ID=Msa0862120-mRNA-1;Parent=Msa0862120;Name=Msa0862120-mRNA-1;_AED=0.09;_eAED=0.09;_QI=88|1|1|1|0.25|0|5|349|319 |
| chr5_4 | exon | 61720887 | 61721011 | 61720887 | ID=Msa0862120-mRNA-1:exon:19192;Parent=Msa0862120-mRNA-1 |
| chr5_4 | exon | 61721039 | 61721256 | 61721039 | ID=Msa0862120-mRNA-1:exon:19191;Parent=Msa0862120-mRNA-1 |
| chr5_4 | exon | 61722587 | 61722679 | 61722587 | ID=Msa0862120-mRNA-1:exon:19190;Parent=Msa0862120-mRNA-1 |
| chr5_4 | exon | 61722840 | 61723606 | 61722840 | ID=Msa0862120-mRNA-1:exon:19189;Parent=Msa0862120-mRNA-1 |
| chr5_4 | exon | 61723855 | 61724048 | 61723855 | ID=Msa0862120-mRNA-1:exon:19188;Parent=Msa0862120-mRNA-1 |
| chr5_4 | five_prime_UTR | 61723961 | 61724048 | 61723961 | ID=Msa0862120-mRNA-1:five_prime_utr;Parent=Msa0862120-mRNA-1 |
| chr5_4 | CDS | 61723855 | 61723960 | 61723855 | ID=Msa0862120-mRNA-1:cds;Parent=Msa0862120-mRNA-1 |
| chr5_4 | CDS | 61722840 | 61723606 | 61722840 | ID=Msa0862120-mRNA-1:cds;Parent=Msa0862120-mRNA-1 |
| chr5_4 | CDS | 61722593 | 61722679 | 61722593 | ID=Msa0862120-mRNA-1:cds;Parent=Msa0862120-mRNA-1 |
| chr5_4 | three_prime_UTR | 61722587 | 61722592 | 61722587 | ID=Msa0862120-mRNA-1:three_prime_utr;Parent=Msa0862120-mRNA-1 |
| chr5_4 | three_prime_UTR | 61721039 | 61721256 | 61721039 | ID=Msa0862120-mRNA-1:three_prime_utr;Parent=Msa0862120-mRNA-1 |
| chr5_4 | three_prime_UTR | 61720887 | 61721011 | 61720887 | ID=Msa0862120-mRNA-1:three_prime_utr;Parent=Msa0862120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
