Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0786280 | XP_003617452.2 | 84.384 | 333 | 36 | 4 | 1 | 319 | 1 | 331 | 0.0 | 532 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0786280 | G7K3D3 | 84.384 | 333 | 36 | 4 | 1 | 319 | 1 | 331 | 0.0 | 532 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0608270 | Msa0786280 | 0.816524 | 5.290495e-52 | -8.615850e-47 |
| Msa0626460 | Msa0786280 | 0.809168 | 2.162556e-50 | -8.615850e-47 |
| Msa0648830 | Msa0786280 | 0.813789 | 2.142654e-51 | -8.615850e-47 |
| Msa0741920 | Msa0786280 | 0.863695 | 2.072436e-64 | -8.615850e-47 |
| Msa0786280 | Msa0823100 | 0.932462 | 8.216941e-95 | -8.615850e-47 |
| Msa0786280 | Msa0862120 | 0.863501 | 2.379410e-64 | -8.615850e-47 |
| Msa0786280 | Msa1165090 | 0.807367 | 5.233409e-50 | -8.615850e-47 |
| Msa0786280 | Msa1219830 | 0.801030 | 1.091022e-48 | -8.615850e-47 |
| Msa0263230 | Msa0786280 | 0.811686 | 6.182407e-51 | -8.615850e-47 |
| Msa0288620 | Msa0786280 | 0.816851 | 4.468690e-52 | -8.615850e-47 |
| Msa0544730 | Msa0786280 | 0.805000 | 1.648399e-49 | -8.615850e-47 |
| Msa0567380 | Msa0786280 | 0.816760 | 4.682380e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0786280 | MtrunA17_Chr5g0443381 | 84.384 | 333 | 36 | 4 | 1 | 319 | 1 | 331 | 0.0 | 532 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 88 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAACATGCCTCAAAATA+TGG | 0.198270 | 5_2:+71699530 | None:intergenic |
| GGATAATAATGAAGGATTTA+AGG | 0.221973 | 5_2:-71701517 | Msa0786280:CDS |
| ATCAATATCAACAAAATCTT+TGG | 0.250643 | 5_2:+71701749 | None:intergenic |
| TAAATATGAAAACTGAAATT+TGG | 0.273532 | 5_2:+71699448 | None:intergenic |
| AGCAAGTTGACTGCTTTAAT+AGG | 0.278280 | 5_2:+71699574 | None:intergenic |
| CATGCAACTGAAATGAGTTT+TGG | 0.306374 | 5_2:+71699423 | None:intergenic |
| TACAGCTTTACTGCTTGATT+TGG | 0.343468 | 5_2:-71699497 | Msa0786280:three_prime_UTR |
| ATCTGAAAATCATAGCAAAA+TGG | 0.345325 | 5_2:-71701904 | Msa0786280:CDS |
| TGACTCCTTAGCACTTTCAT+AGG | 0.369555 | 5_2:+71701266 | None:intergenic |
| GTGGATAAATAAACAAATAA+AGG | 0.379814 | 5_2:+71702333 | None:intergenic |
| GGCCTCAGAAGCTGTAGAAT+TGG | 0.384608 | 5_2:-71701622 | Msa0786280:CDS |
| AAGAACATGCCTCAAAATAT+GGG | 0.391107 | 5_2:+71699531 | None:intergenic |
| GTTAACTTCTATTGCATCAC+TGG | 0.396043 | 5_2:+71701662 | None:intergenic |
| GCAAGTTGACTGCTTTAATA+GGG | 0.396086 | 5_2:+71699575 | None:intergenic |
| CCACCTCATCATTATCTTCA+AGG | 0.400815 | 5_2:+71701565 | None:intergenic |
| AATGACTCCTCAATTCCCTT+TGG | 0.431098 | 5_2:+71701345 | None:intergenic |
| CTCAAAGGCAACACACCTCT+TGG | 0.437333 | 5_2:-71700983 | Msa0786280:CDS |
| AGATTCATTAAGTGAAGATA+AGG | 0.458262 | 5_2:-71701835 | Msa0786280:CDS |
| GTTGGGCAGAGTCAAAGGTT+TGG | 0.462169 | 5_2:+71702224 | None:intergenic |
| CTTCGATATACCTTTGCTCA+TGG | 0.465140 | 5_2:+71699625 | None:intergenic |
| AGGCCATCTTATTCTCAACT+TGG | 0.469285 | 5_2:+71701640 | None:intergenic |
| TATGAAAACTGAAATTTGGT+AGG | 0.474222 | 5_2:+71699452 | None:intergenic |
| AAAGGGAATTGAGGAGTCAT+TGG | 0.475443 | 5_2:-71701343 | Msa0786280:CDS |
| TGAAGTGGTTGAAACAGTTA+AGG | 0.481899 | 5_2:-71701490 | Msa0786280:CDS |
| AATGAAACCACATCAGTTGA+AGG | 0.488510 | 5_2:+71701435 | None:intergenic |
| CTCTTTGAAATTCTGAGGCA+TGG | 0.493717 | 5_2:-71700945 | Msa0786280:CDS |
| CTGCAGTTCTCATGCTGCGA+GGG | 0.495293 | 5_2:-71699600 | Msa0786280:three_prime_UTR |
| TTCGATATACCTTTGCTCAT+GGG | 0.495504 | 5_2:+71699626 | None:intergenic |
| TCTAGAGGCATTGAAAATCA+AGG | 0.497245 | 5_2:-71701174 | Msa0786280:CDS |
| AACATTGCATGAAACTCAAA+AGG | 0.501815 | 5_2:-71701865 | Msa0786280:CDS |
| GACTCCTCAATTCCCTTTGG+AGG | 0.504945 | 5_2:+71701348 | None:intergenic |
| TGTTGGTTGGGCAGAGTCAA+AGG | 0.507031 | 5_2:+71702219 | None:intergenic |
| GTAGGTGAAGAGTGTTGGTT+GGG | 0.507556 | 5_2:+71702207 | None:intergenic |
| ATATGGGGCTCAAAATCAAC+GGG | 0.509920 | 5_2:+71699547 | None:intergenic |
| AATAAACAAATAAAGGAGAA+TGG | 0.511031 | 5_2:+71702340 | None:intergenic |
| TTGGAATTGAATGATGAGAA+AGG | 0.511441 | 5_2:-71701603 | Msa0786280:CDS |
| TCAAATAGTTGGGAGCTTGA+AGG | 0.524609 | 5_2:-71699656 | Msa0786280:intron |
| TGTTCCTCCAAAGGGAATTG+AGG | 0.527183 | 5_2:-71701352 | Msa0786280:CDS |
| GTTGGGAGCTTGAAGGAGGT+TGG | 0.528065 | 5_2:-71699649 | Msa0786280:three_prime_UTR |
| GCGGACTCTTTGAAATTCTG+AGG | 0.535370 | 5_2:-71700950 | Msa0786280:CDS |
| ACTTCAAAGGATAATAATGA+AGG | 0.536408 | 5_2:-71701525 | Msa0786280:CDS |
| TGAAGATAATGATGAGGTGG+AGG | 0.538135 | 5_2:-71701562 | Msa0786280:CDS |
| CACCTCATCATTATCTTCAA+GGG | 0.545624 | 5_2:+71701566 | None:intergenic |
| TGGGTTTGTAGTTGAACAGT+AGG | 0.549277 | 5_2:+71702189 | None:intergenic |
| TTCATTAAGTGAAGATAAGG+AGG | 0.550055 | 5_2:-71701832 | Msa0786280:CDS |
| TTTGGTATCACTGATAGACT+TGG | 0.551465 | 5_2:+71701767 | None:intergenic |
| AAAATGGAAGGAAATTTGAA+TGG | 0.553733 | 5_2:-71701888 | Msa0786280:CDS |
| GAACAGTAGGTGAAGAGTGT+TGG | 0.557856 | 5_2:+71702202 | None:intergenic |
| AATTGATGATGAGGGTGAAA+AGG | 0.558460 | 5_2:-71701376 | Msa0786280:CDS |
| TAACCAAGTTGAGAATAAGA+TGG | 0.563805 | 5_2:-71701643 | Msa0786280:CDS |
| GTTTGTTACTTCGAATAATG+CGG | 0.564690 | 5_2:+71699394 | None:intergenic |
| CTAGAGGCATTGAAAATCAA+GGG | 0.566438 | 5_2:-71701173 | Msa0786280:CDS |
| AGGATTTAAGGTAACTGAAG+TGG | 0.567004 | 5_2:-71701505 | Msa0786280:CDS |
| TTCCAATTCTACAGCTTCTG+AGG | 0.567350 | 5_2:+71701620 | None:intergenic |
| GCTTTGGAGACAAGTGGTGA+GGG | 0.567385 | 5_2:-71701399 | Msa0786280:CDS |
| GGACATGACAGTAGCTGAGG+AGG | 0.567686 | 5_2:-71701469 | Msa0786280:CDS |
| GAAAAGGTTGTTCCTCCAAA+GGG | 0.568369 | 5_2:-71701360 | Msa0786280:CDS |
| TGTTGAGTCATGCAAGGTGG+TGG | 0.568757 | 5_2:-71701721 | Msa0786280:CDS |
| ATGAAAACTGAAATTTGGTA+GGG | 0.571179 | 5_2:+71699453 | None:intergenic |
| TGCTTTGGAGACAAGTGGTG+AGG | 0.574628 | 5_2:-71701400 | Msa0786280:CDS |
| TCTGCTGATGATGATTATGA+TGG | 0.574692 | 5_2:-71701795 | Msa0786280:CDS |
| TGAAAAGGTTGTTCCTCCAA+AGG | 0.575350 | 5_2:-71701361 | Msa0786280:CDS |
| AGTAGGTGAAGAGTGTTGGT+TGG | 0.576236 | 5_2:+71702206 | None:intergenic |
| ACCTCTTGGAAGAATTGTTG+CGG | 0.585031 | 5_2:-71700969 | Msa0786280:CDS |
| ATCATCCTATGAAAGTGCTA+AGG | 0.585651 | 5_2:-71701271 | Msa0786280:CDS |
| GTATAGGCATGGTTACTGAC+TGG | 0.588901 | 5_2:+71702283 | None:intergenic |
| GAAAATCATAGCAAAATGGA+AGG | 0.594613 | 5_2:-71701900 | Msa0786280:CDS |
| AATATGGGGCTCAAAATCAA+CGG | 0.597706 | 5_2:+71699546 | None:intergenic |
| TAAGGACATGACAGTAGCTG+AGG | 0.602185 | 5_2:-71701472 | Msa0786280:CDS |
| AACTGAATTAGCTACTTCAA+AGG | 0.610607 | 5_2:-71701538 | Msa0786280:CDS |
| ACTGCAGTTCTCATGCTGCG+AGG | 0.612280 | 5_2:-71699601 | Msa0786280:three_prime_UTR |
| GGAGGTTGGCCCATGAGCAA+AGG | 0.613149 | 5_2:-71699635 | Msa0786280:three_prime_UTR |
| GAAGTTGCTTTGGAGACAAG+TGG | 0.613463 | 5_2:-71701405 | Msa0786280:CDS |
| CCTTGAAGATAATGATGAGG+TGG | 0.613497 | 5_2:-71701565 | Msa0786280:CDS |
| AATAGTTGGGAGCTTGAAGG+AGG | 0.616938 | 5_2:-71699653 | Msa0786280:intron |
| TGGTGAGGGAATTGATGATG+AGG | 0.630447 | 5_2:-71701385 | Msa0786280:CDS |
| AGAACATGCCTCAAAATATG+GGG | 0.635864 | 5_2:+71699532 | None:intergenic |
| GGTGAGGGAATTGATGATGA+GGG | 0.638068 | 5_2:-71701384 | Msa0786280:CDS |
| TCCGCAACAATTCTTCCAAG+AGG | 0.641763 | 5_2:+71700968 | None:intergenic |
| ATCTACACAGGAGAAAGTTG+AGG | 0.647223 | 5_2:-71701316 | Msa0786280:CDS |
| GTCATTGGTGACATCTACAC+AGG | 0.650440 | 5_2:-71701328 | Msa0786280:CDS |
| ACTGTTCAACTACAAACCCA+AGG | 0.650999 | 5_2:-71702186 | Msa0786280:intron |
| ATCCCTTGAAGATAATGATG+AGG | 0.651217 | 5_2:-71701568 | Msa0786280:CDS |
| TAGAGGCATTGAAAATCAAG+GGG | 0.660240 | 5_2:-71701172 | Msa0786280:intron |
| TGCTTGATTTGGTTTCAAAG+TGG | 0.673169 | 5_2:-71699486 | Msa0786280:three_prime_UTR |
| GACACGATTGAAGAATCTAG+AGG | 0.692176 | 5_2:-71701189 | Msa0786280:CDS |
| TGAACATGTTGAGTCATGCA+AGG | 0.711218 | 5_2:-71701727 | Msa0786280:CDS |
| ACATGTTGAGTCATGCAAGG+TGG | 0.794332 | 5_2:-71701724 | Msa0786280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTATAGTAATATGA+GGG | + | chr5_2:71700887-71700906 | None:intergenic | 10.0% |
| !!! | ATATTTTTTATAGTAATATG+AGG | + | chr5_2:71700888-71700907 | None:intergenic | 10.0% |
| !!! | AATAGTTTTTCTTTTTTATA+TGG | - | chr5_2:71701029-71701048 | Msa0786280:intron | 10.0% |
| !!! | TTTTCTTTCAATAAACAAAT+TGG | - | chr5_2:71699669-71699688 | Msa0786280:intron | 15.0% |
| !!! | ACTAACATGTTTTAATTAAA+AGG | - | chr5_2:71700818-71700837 | Msa0786280:intron | 15.0% |
| !! | AAAAGAAAAACTATTTAACA+AGG | + | chr5_2:71701024-71701043 | None:intergenic | 15.0% |
| !! | TTATAGTAATCTAAAAATGT+GGG | - | chr5_2:71701326-71701345 | Msa0786280:CDS | 15.0% |
| !!! | ATTTTTTTGATTCAAATAGT+TGG | - | chr5_2:71702018-71702037 | Msa0786280:intron | 15.0% |
| !!! | TTTTTTTGATTCAAATAGTT+GGG | - | chr5_2:71702019-71702038 | Msa0786280:intron | 15.0% |
| !! | TAAATATGAAAACTGAAATT+TGG | + | chr5_2:71702240-71702259 | None:intergenic | 15.0% |
| !!! | TCCTAATTATGATATTTTTA+TGG | - | chr5_2:71702338-71702357 | Msa0786280:five_prime_UTR | 15.0% |
| !! | TCCATAAAAATATCATAATT+AGG | + | chr5_2:71702342-71702361 | None:intergenic | 15.0% |
| !! | AATAAACAAATAAAGGAGAA+TGG | + | chr5_2:71699348-71699367 | None:intergenic | 20.0% |
| !! | GTGGATAAATAAACAAATAA+AGG | + | chr5_2:71699355-71699374 | None:intergenic | 20.0% |
| !! | GTAACAATTATTGAAAACAT+AGG | + | chr5_2:71699619-71699638 | None:intergenic | 20.0% |
| !!! | TGTTTTTTTTTTTTATCAGC+AGG | - | chr5_2:71699749-71699768 | Msa0786280:intron | 20.0% |
| !! | ATCAATATCAACAAAATCTT+TGG | + | chr5_2:71699939-71699958 | None:intergenic | 20.0% |
| !! | GAAAATAAAATCCTAAACTA+AGG | + | chr5_2:71700792-71700811 | None:intergenic | 20.0% |
| !! | ATTACTATAACAAAGTAACT+AGG | + | chr5_2:71701316-71701335 | None:intergenic | 20.0% |
| !! | GTTATAGTAATCTAAAAATG+TGG | - | chr5_2:71701325-71701344 | Msa0786280:CDS | 20.0% |
| !!! | ATATTTTCAATAGATTCTCT+TGG | - | chr5_2:71701379-71701398 | Msa0786280:CDS | 20.0% |
| !!! | GTTTTTTTTCTTGAAGGTAT+AGG | + | chr5_2:71699421-71699440 | None:intergenic | 25.0% |
| !!! | TGCTTTGTTTTTTTTCTTGA+AGG | + | chr5_2:71699427-71699446 | None:intergenic | 25.0% |
| ! | AACAAAGAAACAACAAAAAG+AGG | + | chr5_2:71699560-71699579 | None:intergenic | 25.0% |
| ! | GAAAAACAAAGAAAACATGA+GGG | + | chr5_2:71699654-71699673 | None:intergenic | 25.0% |
| ! | AGAAAAACAAAGAAAACATG+AGG | + | chr5_2:71699655-71699674 | None:intergenic | 25.0% |
| !! | AAATAGATCTTTTCCACATA+CGG | - | chr5_2:71699700-71699719 | Msa0786280:intron | 25.0% |
| ! | ATCTGAAAATCATAGCAAAA+TGG | - | chr5_2:71699781-71699800 | Msa0786280:intron | 25.0% |
| ! | AAAATGGAAGGAAATTTGAA+TGG | - | chr5_2:71699797-71699816 | Msa0786280:intron | 25.0% |
| ! | AGATTCATTAAGTGAAGATA+AGG | - | chr5_2:71699850-71699869 | Msa0786280:intron | 25.0% |
| ! | ACTTCAAAGGATAATAATGA+AGG | - | chr5_2:71700160-71700179 | Msa0786280:intron | 25.0% |
| ! | GGATAATAATGAAGGATTTA+AGG | - | chr5_2:71700168-71700187 | Msa0786280:intron | 25.0% |
| ! | ATTGTTAATCAAACTTTGGT+TGG | + | chr5_2:71700920-71700939 | None:intergenic | 25.0% |
| ! | ATGCATTGTTAATCAAACTT+TGG | + | chr5_2:71700924-71700943 | None:intergenic | 25.0% |
| !! | CAATGCATTTTATGTCAATA+TGG | - | chr5_2:71700936-71700955 | Msa0786280:CDS | 25.0% |
| ! | TTTAACAAGGAATGTTTAAC+TGG | + | chr5_2:71701011-71701030 | None:intergenic | 25.0% |
| !!! | AGATTTTTGAACCTCTAAAA+GGG | + | chr5_2:71701080-71701099 | None:intergenic | 25.0% |
| ! | TCAAAAATCTGGAAAATACT+TGG | - | chr5_2:71701090-71701109 | Msa0786280:intron | 25.0% |
| ! | CAAAAATCTGGAAAATACTT+GGG | - | chr5_2:71701091-71701110 | Msa0786280:intron | 25.0% |
| ! | TAGATATTTGACTAGACTTT+AGG | + | chr5_2:71701416-71701435 | None:intergenic | 25.0% |
| !! | AATGATGAGATGTTTAAGAT+TGG | + | chr5_2:71701516-71701535 | None:intergenic | 25.0% |
| ! | CAAAGTTAACTTAAATCGAT+AGG | - | chr5_2:71701680-71701699 | Msa0786280:CDS | 25.0% |
| ! | AATGTGACAATTCATAGATA+TGG | + | chr5_2:71701782-71701801 | None:intergenic | 25.0% |
| !! | AATTTAGAGGATGAACTTTT+TGG | - | chr5_2:71701842-71701861 | Msa0786280:CDS | 25.0% |
| ! | ATGAAAACTGAAATTTGGTA+GGG | + | chr5_2:71702235-71702254 | None:intergenic | 25.0% |
| ! | TATGAAAACTGAAATTTGGT+AGG | + | chr5_2:71702236-71702255 | None:intergenic | 25.0% |
| AGAAACAACAAAAAGAGGTT+GGG | + | chr5_2:71699555-71699574 | None:intergenic | 30.0% | |
| AAGAAACAACAAAAAGAGGT+TGG | + | chr5_2:71699556-71699575 | None:intergenic | 30.0% | |
| TAGTTTACTACATCCTTGTA+TGG | - | chr5_2:71699590-71699609 | Msa0786280:three_prime_UTR | 30.0% | |
| AAAACATAGGATACCATACA+AGG | + | chr5_2:71699606-71699625 | None:intergenic | 30.0% | |
| ATAGAGATATATACCGTATG+TGG | + | chr5_2:71699716-71699735 | None:intergenic | 30.0% | |
| ATACGGTATATATCTCTATG+TGG | - | chr5_2:71699717-71699736 | Msa0786280:intron | 30.0% | |
| GAAAATCATAGCAAAATGGA+AGG | - | chr5_2:71699785-71699804 | Msa0786280:intron | 30.0% | |
| AACATTGCATGAAACTCAAA+AGG | - | chr5_2:71699820-71699839 | Msa0786280:intron | 30.0% | |
| TTCATTAAGTGAAGATAAGG+AGG | - | chr5_2:71699853-71699872 | Msa0786280:intron | 30.0% | |
| ! | TAACCAAGTTGAGAATAAGA+TGG | - | chr5_2:71700042-71700061 | Msa0786280:intron | 30.0% |
| TTGGAATTGAATGATGAGAA+AGG | - | chr5_2:71700082-71700101 | Msa0786280:intron | 30.0% | |
| AACTGAATTAGCTACTTCAA+AGG | - | chr5_2:71700147-71700166 | Msa0786280:intron | 30.0% | |
| ! | TGATGTGGTTTCATTTTCAA+GGG | - | chr5_2:71700258-71700277 | Msa0786280:intron | 30.0% |
| ! | AGCACAATCTAAAATGTCTA+TGG | + | chr5_2:71700598-71700617 | None:intergenic | 30.0% |
| AACATGTTGAAACAGATGTA+GGG | - | chr5_2:71700841-71700860 | Msa0786280:intron | 30.0% | |
| GTCAATATGGTCAAAATTGT+TGG | - | chr5_2:71700949-71700968 | Msa0786280:CDS | 30.0% | |
| ! | CAGATTTTTGAACCTCTAAA+AGG | + | chr5_2:71701081-71701100 | None:intergenic | 30.0% |
| !! | CTTTTAGAGGTTCAAAAATC+TGG | - | chr5_2:71701079-71701098 | Msa0786280:intron | 30.0% |
| ! | TGTGTTCACTTCAGATTTTT+GGG | + | chr5_2:71701279-71701298 | None:intergenic | 30.0% |
| TTGGTTATTGACCAATCTTT+GGG | + | chr5_2:71701497-71701516 | None:intergenic | 30.0% | |
| ATTGGTTATTGACCAATCTT+TGG | + | chr5_2:71701498-71701517 | None:intergenic | 30.0% | |
| TCCCTAAAATTGTAAAACAC+CGG | - | chr5_2:71701596-71701615 | Msa0786280:CDS | 30.0% | |
| ! | ACCGGTGTTTTACAATTTTA+GGG | + | chr5_2:71701600-71701619 | None:intergenic | 30.0% |
| ! | AACCGGTGTTTTACAATTTT+AGG | + | chr5_2:71701601-71701620 | None:intergenic | 30.0% |
| AAACCAAGGATGAATTTAAC+CGG | + | chr5_2:71701618-71701637 | None:intergenic | 30.0% | |
| ATTGCTAATTCGTAAAACCA+AGG | + | chr5_2:71701632-71701651 | None:intergenic | 30.0% | |
| TGGATTGACGTTAAAATCTT+CGG | - | chr5_2:71701862-71701881 | Msa0786280:CDS | 30.0% | |
| ! | GGCTAATTCGTTAACAATTT+TGG | + | chr5_2:71701889-71701908 | None:intergenic | 30.0% |
| AAGAACATGCCTCAAAATAT+GGG | + | chr5_2:71702157-71702176 | None:intergenic | 30.0% | |
| AAAGAACATGCCTCAAAATA+TGG | + | chr5_2:71702158-71702177 | None:intergenic | 30.0% | |
| ! | GTTTGTTACTTCGAATAATG+CGG | + | chr5_2:71702294-71702313 | None:intergenic | 30.0% |
| !! | TTGTTTTGTGAAGAGAATGG+TGG | + | chr5_2:71699374-71699393 | None:intergenic | 35.0% |
| !!! | GCTTTGTTTTGTGAAGAGAA+TGG | + | chr5_2:71699377-71699396 | None:intergenic | 35.0% |
| !! | TTTTCTTGAAGGTATAGGCA+TGG | + | chr5_2:71699416-71699435 | None:intergenic | 35.0% |
| !!! | CAAAGGTTTGGTTTTGTTCT+TGG | + | chr5_2:71699452-71699471 | None:intergenic | 35.0% |
| AGAAAACATGAGGGTTTGAA+AGG | + | chr5_2:71699645-71699664 | None:intergenic | 35.0% | |
| ! | TCTGCTGATGATGATTATGA+TGG | - | chr5_2:71699890-71699909 | Msa0786280:intron | 35.0% |
| TTTGGTATCACTGATAGACT+TGG | + | chr5_2:71699921-71699940 | None:intergenic | 35.0% | |
| GTTAACTTCTATTGCATCAC+TGG | + | chr5_2:71700026-71700045 | None:intergenic | 35.0% | |
| ATCCCTTGAAGATAATGATG+AGG | - | chr5_2:71700117-71700136 | Msa0786280:intron | 35.0% | |
| CACCTCATCATTATCTTCAA+GGG | + | chr5_2:71700122-71700141 | None:intergenic | 35.0% | |
| ! | AGGATTTAAGGTAACTGAAG+TGG | - | chr5_2:71700180-71700199 | Msa0786280:intron | 35.0% |
| TGAAGTGGTTGAAACAGTTA+AGG | - | chr5_2:71700195-71700214 | Msa0786280:intron | 35.0% | |
| AATGAAACCACATCAGTTGA+AGG | + | chr5_2:71700253-71700272 | None:intergenic | 35.0% | |
| ! | CTGATGTGGTTTCATTTTCA+AGG | - | chr5_2:71700257-71700276 | Msa0786280:intron | 35.0% |
| !! | ATTTTCAAGGGAAGTTGCTT+TGG | - | chr5_2:71700270-71700289 | Msa0786280:intron | 35.0% |
| !! | AATTGATGATGAGGGTGAAA+AGG | - | chr5_2:71700309-71700328 | Msa0786280:intron | 35.0% |
| !! | ATCATCCTATGAAAGTGCTA+AGG | - | chr5_2:71700414-71700433 | Msa0786280:intron | 35.0% |
| !! | TCTAGAGGCATTGAAAATCA+AGG | - | chr5_2:71700511-71700530 | Msa0786280:intron | 35.0% |
| !! | CTAGAGGCATTGAAAATCAA+GGG | - | chr5_2:71700512-71700531 | Msa0786280:intron | 35.0% |
| !! | TAGAGGCATTGAAAATCAAG+GGG | - | chr5_2:71700513-71700532 | Msa0786280:intron | 35.0% |
| CTGTCACAAAAGAAAGAAGA+AGG | + | chr5_2:71700666-71700685 | None:intergenic | 35.0% | |
| CGTGAGTAAAACCTTAGTTT+AGG | - | chr5_2:71700778-71700797 | Msa0786280:intron | 35.0% | |
| GAACATGTTGAAACAGATGT+AGG | - | chr5_2:71700840-71700859 | Msa0786280:intron | 35.0% | |
| ATTAAATCTGGGTCACACAA+AGG | - | chr5_2:71701134-71701153 | Msa0786280:intron | 35.0% | |
| ACAACACATACAACACATCT+GGG | + | chr5_2:71701175-71701194 | None:intergenic | 35.0% | |
| ! | GTGTTCACTTCAGATTTTTG+GGG | + | chr5_2:71701278-71701297 | None:intergenic | 35.0% |
| ! | CTGTGTTCACTTCAGATTTT+TGG | + | chr5_2:71701280-71701299 | None:intergenic | 35.0% |
| AACTTGTGAACCAAACTTGT+TGG | - | chr5_2:71701463-71701482 | Msa0786280:CDS | 35.0% | |
| ! | ACTTGTGAACCAAACTTGTT+GGG | - | chr5_2:71701464-71701483 | Msa0786280:CDS | 35.0% |
| ACAGTCCAATCTTGAACTTA+GGG | + | chr5_2:71701553-71701572 | None:intergenic | 35.0% | |
| AACAGTCCAATCTTGAACTT+AGG | + | chr5_2:71701554-71701573 | None:intergenic | 35.0% | |
| ACTTAAATCGATAGGCAACA+TGG | - | chr5_2:71701688-71701707 | Msa0786280:CDS | 35.0% | |
| CGGCATGTTAAATAAAGATG+CGG | - | chr5_2:71701713-71701732 | Msa0786280:CDS | 35.0% | |
| AAACTTGCAACATGTTGTCT+AGG | - | chr5_2:71701814-71701833 | Msa0786280:CDS | 35.0% | |
| AACTTGCAACATGTTGTCTA+GGG | - | chr5_2:71701815-71701834 | Msa0786280:CDS | 35.0% | |
| CAAGACAGATTAGATTATGC+AGG | + | chr5_2:71701928-71701947 | None:intergenic | 35.0% | |
| AAAGCTAAATTAAGCTCGAG+TGG | - | chr5_2:71701964-71701983 | Msa0786280:intron | 35.0% | |
| TTCGATATACCTTTGCTCAT+GGG | + | chr5_2:71702062-71702081 | None:intergenic | 35.0% | |
| ! | GCAAGTTGACTGCTTTAATA+GGG | + | chr5_2:71702113-71702132 | None:intergenic | 35.0% |
| ! | AGCAAGTTGACTGCTTTAAT+AGG | + | chr5_2:71702114-71702133 | None:intergenic | 35.0% |
| AATATGGGGCTCAAAATCAA+CGG | + | chr5_2:71702142-71702161 | None:intergenic | 35.0% | |
| ! | ATTTTGAGCCCCATATTTTG+AGG | - | chr5_2:71702145-71702164 | Msa0786280:intron | 35.0% |
| AGAACATGCCTCAAAATATG+GGG | + | chr5_2:71702156-71702175 | None:intergenic | 35.0% | |
| TACAGCTTTACTGCTTGATT+TGG | - | chr5_2:71702188-71702207 | Msa0786280:CDS | 35.0% | |
| !! | TGCTTGATTTGGTTTCAAAG+TGG | - | chr5_2:71702199-71702218 | Msa0786280:CDS | 35.0% |
| ! | CATGCAACTGAAATGAGTTT+TGG | + | chr5_2:71702265-71702284 | None:intergenic | 35.0% |
| TGGGTTTGTAGTTGAACAGT+AGG | + | chr5_2:71699499-71699518 | None:intergenic | 40.0% | |
| ACTGTTCAACTACAAACCCA+AGG | - | chr5_2:71699499-71699518 | Msa0786280:three_prime_UTR | 40.0% | |
| CAACAAAAAGAGGTTGGGAA+AGG | + | chr5_2:71699550-71699569 | None:intergenic | 40.0% | |
| TGAACATGTTGAGTCATGCA+AGG | - | chr5_2:71699958-71699977 | Msa0786280:intron | 40.0% | |
| AGGCCATCTTATTCTCAACT+TGG | + | chr5_2:71700048-71700067 | None:intergenic | 40.0% | |
| TTCCAATTCTACAGCTTCTG+AGG | + | chr5_2:71700068-71700087 | None:intergenic | 40.0% | |
| CCACCTCATCATTATCTTCA+AGG | + | chr5_2:71700123-71700142 | None:intergenic | 40.0% | |
| CCTTGAAGATAATGATGAGG+TGG | - | chr5_2:71700120-71700139 | Msa0786280:intron | 40.0% | |
| TGAAGATAATGATGAGGTGG+AGG | - | chr5_2:71700123-71700142 | Msa0786280:intron | 40.0% | |
| ! | TGTTTTGCCTTCAACTGATG+TGG | - | chr5_2:71700243-71700262 | Msa0786280:intron | 40.0% |
| TGAAAAGGTTGTTCCTCCAA+AGG | - | chr5_2:71700324-71700343 | Msa0786280:intron | 40.0% | |
| GAAAAGGTTGTTCCTCCAAA+GGG | - | chr5_2:71700325-71700344 | Msa0786280:intron | 40.0% | |
| AATGACTCCTCAATTCCCTT+TGG | + | chr5_2:71700343-71700362 | None:intergenic | 40.0% | |
| AAAGGGAATTGAGGAGTCAT+TGG | - | chr5_2:71700342-71700361 | Msa0786280:intron | 40.0% | |
| ATCTACACAGGAGAAAGTTG+AGG | - | chr5_2:71700369-71700388 | Msa0786280:intron | 40.0% | |
| TGACTCCTTAGCACTTTCAT+AGG | + | chr5_2:71700422-71700441 | None:intergenic | 40.0% | |
| GACACGATTGAAGAATCTAG+AGG | - | chr5_2:71700496-71700515 | Msa0786280:intron | 40.0% | |
| !! | GCATTTTTGCTGTGACTCAA+AGG | - | chr5_2:71700687-71700706 | Msa0786280:intron | 40.0% |
| ACCTCTTGGAAGAATTGTTG+CGG | - | chr5_2:71700716-71700735 | Msa0786280:intron | 40.0% | |
| !! | CTCTTTGAAATTCTGAGGCA+TGG | - | chr5_2:71700740-71700759 | Msa0786280:intron | 40.0% |
| GAGGGTAATTGACACAAAGT+TGG | + | chr5_2:71700869-71700888 | None:intergenic | 40.0% | |
| ! | CTGATTGATCACCCTTTTAG+AGG | - | chr5_2:71701066-71701085 | Msa0786280:intron | 40.0% |
| TGTCACCGTGACATTAAATC+TGG | - | chr5_2:71701122-71701141 | Msa0786280:intron | 40.0% | |
| GTCACCGTGACATTAAATCT+GGG | - | chr5_2:71701123-71701142 | Msa0786280:intron | 40.0% | |
| GTGACCCAGATTTAATGTCA+CGG | + | chr5_2:71701130-71701149 | None:intergenic | 40.0% | |
| CACAACACATACAACACATC+TGG | + | chr5_2:71701176-71701195 | None:intergenic | 40.0% | |
| GATGTGTTGTATGTGTTGTG+TGG | - | chr5_2:71701176-71701195 | Msa0786280:CDS | 40.0% | |
| GTCACCGTGACATTAAATCT+GGG | + | chr5_2:71701123-71701142 | None:intergenic | 40.0% | |
| TGTCACCGTGACATTAAATC+TGG | + | chr5_2:71701122-71701141 | None:intergenic | 40.0% | |
| !!! | AGATTTTTGGGGAAGCACTT+GGG | + | chr5_2:71701267-71701286 | None:intergenic | 40.0% |
| TTTCCCCCTAAGTTCAAGAT+TGG | - | chr5_2:71701545-71701564 | Msa0786280:CDS | 40.0% | |
| AGTCCAATCTTGAACTTAGG+GGG | + | chr5_2:71701551-71701570 | None:intergenic | 40.0% | |
| CAGTCCAATCTTGAACTTAG+GGG | + | chr5_2:71701552-71701571 | None:intergenic | 40.0% | |
| ! | ACACCGGTTAAATTCATCCT+TGG | - | chr5_2:71701612-71701631 | Msa0786280:CDS | 40.0% |
| AGTGAAGTGTGGAGTCTATA+TGG | + | chr5_2:71701743-71701762 | None:intergenic | 40.0% | |
| AATGAAGTCGTAGTGAAGTG+TGG | + | chr5_2:71701754-71701773 | None:intergenic | 40.0% | |
| CACTTCACTACGACTTCATT+AGG | - | chr5_2:71701754-71701773 | Msa0786280:CDS | 40.0% | |
| TGTCTAGGGACTGAATTTAG+AGG | - | chr5_2:71701829-71701848 | Msa0786280:CDS | 40.0% | |
| TCAAATAGTTGGGAGCTTGA+AGG | - | chr5_2:71702029-71702048 | Msa0786280:intron | 40.0% | |
| CTTCGATATACCTTTGCTCA+TGG | + | chr5_2:71702063-71702082 | None:intergenic | 40.0% | |
| ATATGGGGCTCAAAATCAAC+GGG | + | chr5_2:71702141-71702160 | None:intergenic | 40.0% | |
| GTATAGGCATGGTTACTGAC+TGG | + | chr5_2:71699405-71699424 | None:intergenic | 45.0% | |
| !! | GTAGGTGAAGAGTGTTGGTT+GGG | + | chr5_2:71699481-71699500 | None:intergenic | 45.0% |
| !! | AGTAGGTGAAGAGTGTTGGT+TGG | + | chr5_2:71699482-71699501 | None:intergenic | 45.0% |
| ! | GAACAGTAGGTGAAGAGTGT+TGG | + | chr5_2:71699486-71699505 | None:intergenic | 45.0% |
| GAGAGAGTGATGACTACCTT+GGG | + | chr5_2:71699518-71699537 | None:intergenic | 45.0% | |
| AGAGAGAGTGATGACTACCT+TGG | + | chr5_2:71699519-71699538 | None:intergenic | 45.0% | |
| AAGAGGTTGGGAAAGGTAGA+TGG | + | chr5_2:71699543-71699562 | None:intergenic | 45.0% | |
| ACATGTTGAGTCATGCAAGG+TGG | - | chr5_2:71699961-71699980 | Msa0786280:intron | 45.0% | |
| TAAGGACATGACAGTAGCTG+AGG | - | chr5_2:71700213-71700232 | Msa0786280:intron | 45.0% | |
| !! | GAAGTTGCTTTGGAGACAAG+TGG | - | chr5_2:71700280-71700299 | Msa0786280:intron | 45.0% |
| !! | TGGTGAGGGAATTGATGATG+AGG | - | chr5_2:71700300-71700319 | Msa0786280:intron | 45.0% |
| !! | GGTGAGGGAATTGATGATGA+GGG | - | chr5_2:71700301-71700320 | Msa0786280:intron | 45.0% |
| TGTTCCTCCAAAGGGAATTG+AGG | - | chr5_2:71700333-71700352 | Msa0786280:intron | 45.0% | |
| ! | GTCATTGGTGACATCTACAC+AGG | - | chr5_2:71700357-71700376 | Msa0786280:intron | 45.0% |
| TCCGCAACAATTCTTCCAAG+AGG | + | chr5_2:71700720-71700739 | None:intergenic | 45.0% | |
| !! | GCGGACTCTTTGAAATTCTG+AGG | - | chr5_2:71700735-71700754 | Msa0786280:intron | 45.0% |
| !! | CACAAAGGTGTTGTGTTGTG+TGG | - | chr5_2:71701149-71701168 | Msa0786280:intron | 45.0% |
| CACATTGCCACACAACATCT+GGG | + | chr5_2:71701202-71701221 | None:intergenic | 45.0% | |
| ACACATTGCCACACAACATC+TGG | + | chr5_2:71701203-71701222 | None:intergenic | 45.0% | |
| GTGGCCCAGATTTAATGTCA+CGG | - | chr5_2:71701228-71701247 | Msa0786280:CDS | 45.0% | |
| !!! | CAGATTTTTGGGGAAGCACT+TGG | + | chr5_2:71701268-71701287 | None:intergenic | 45.0% |
| GGTAGAAGACCCAACAAGTT+TGG | + | chr5_2:71701476-71701495 | None:intergenic | 45.0% | |
| TGGGTCTTCTACCCAAAGAT+TGG | - | chr5_2:71701483-71701502 | Msa0786280:CDS | 45.0% | |
| AATCGATAGGCAACATGGCA+CGG | - | chr5_2:71701693-71701712 | Msa0786280:CDS | 45.0% | |
| GCAGGCAGCATATTGTGAAT+AGG | + | chr5_2:71701910-71701929 | None:intergenic | 45.0% | |
| AATAGTTGGGAGCTTGAAGG+AGG | - | chr5_2:71702032-71702051 | Msa0786280:intron | 45.0% | |
| GTTGGGCAGAGTCAAAGGTT+TGG | + | chr5_2:71699464-71699483 | None:intergenic | 50.0% | |
| ! | TGTTGGTTGGGCAGAGTCAA+AGG | + | chr5_2:71699469-71699488 | None:intergenic | 50.0% |
| TGTTGAGTCATGCAAGGTGG+TGG | - | chr5_2:71699964-71699983 | Msa0786280:intron | 50.0% | |
| GGCCTCAGAAGCTGTAGAAT+TGG | - | chr5_2:71700063-71700082 | Msa0786280:intron | 50.0% | |
| !! | TGCTTTGGAGACAAGTGGTG+AGG | - | chr5_2:71700285-71700304 | Msa0786280:intron | 50.0% |
| !! | GCTTTGGAGACAAGTGGTGA+GGG | - | chr5_2:71700286-71700305 | Msa0786280:intron | 50.0% |
| GACTCCTCAATTCCCTTTGG+AGG | + | chr5_2:71700340-71700359 | None:intergenic | 50.0% | |
| CTCAAAGGCAACACACCTCT+TGG | - | chr5_2:71700702-71700721 | Msa0786280:intron | 50.0% | |
| GTGTGGCAATGTGTGTTGTG+TGG | - | chr5_2:71701209-71701228 | Msa0786280:CDS | 50.0% | |
| GGACATGACAGTAGCTGAGG+AGG | - | chr5_2:71700216-71700235 | Msa0786280:intron | 55.0% | |
| TGTGTGGCCCAGATGTTGTG+TGG | - | chr5_2:71701192-71701211 | Msa0786280:CDS | 55.0% | |
| GTTGGGAGCTTGAAGGAGGT+TGG | - | chr5_2:71702036-71702055 | Msa0786280:intron | 55.0% | |
| ACTGCAGTTCTCATGCTGCG+AGG | - | chr5_2:71702084-71702103 | Msa0786280:intron | 55.0% | |
| CTGCAGTTCTCATGCTGCGA+GGG | - | chr5_2:71702085-71702104 | Msa0786280:intron | 55.0% | |
| ! | GGAGGTTGGCCCATGAGCAA+AGG | - | chr5_2:71702050-71702069 | Msa0786280:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 71699327 | 71702380 | 71699327 | ID=Msa0786280;Name=Msa0786280 |
| chr5_2 | mRNA | 71699327 | 71702380 | 71699327 | ID=Msa0786280-mRNA-1;Parent=Msa0786280;Name=Msa0786280-mRNA-1;_AED=0.04;_eAED=0.04;_QI=88|1|1|1|0.33|0|4|350|319 |
| chr5_2 | exon | 71699327 | 71699670 | 71699327 | ID=Msa0786280-mRNA-1:exon:21701;Parent=Msa0786280-mRNA-1 |
| chr5_2 | exon | 71700929 | 71701021 | 71700929 | ID=Msa0786280-mRNA-1:exon:21700;Parent=Msa0786280-mRNA-1 |
| chr5_2 | exon | 71701173 | 71701939 | 71701173 | ID=Msa0786280-mRNA-1:exon:21699;Parent=Msa0786280-mRNA-1 |
| chr5_2 | exon | 71702187 | 71702380 | 71702187 | ID=Msa0786280-mRNA-1:exon:21698;Parent=Msa0786280-mRNA-1 |
| chr5_2 | five_prime_UTR | 71702293 | 71702380 | 71702293 | ID=Msa0786280-mRNA-1:five_prime_utr;Parent=Msa0786280-mRNA-1 |
| chr5_2 | CDS | 71702187 | 71702292 | 71702187 | ID=Msa0786280-mRNA-1:cds;Parent=Msa0786280-mRNA-1 |
| chr5_2 | CDS | 71701173 | 71701939 | 71701173 | ID=Msa0786280-mRNA-1:cds;Parent=Msa0786280-mRNA-1 |
| chr5_2 | CDS | 71700935 | 71701021 | 71700935 | ID=Msa0786280-mRNA-1:cds;Parent=Msa0786280-mRNA-1 |
| chr5_2 | three_prime_UTR | 71700929 | 71700934 | 71700929 | ID=Msa0786280-mRNA-1:three_prime_utr;Parent=Msa0786280-mRNA-1 |
| chr5_2 | three_prime_UTR | 71699327 | 71699670 | 71699327 | ID=Msa0786280-mRNA-1:three_prime_utr;Parent=Msa0786280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
