AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0746880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0746880 MtrunA17_Chr5g0394891 93.225 369 9 1 1 353 1 369 0.0 702
Msa0746880 MtrunA17_Chr5g0394861 89.757 371 20 2 1 353 1 371 0.0 680
Msa0746880 MtrunA17_Chr5g0394841 83.827 371 42 2 1 353 1 371 0.0 642
Msa0746880 MtrunA17_Chr5g0395841 79.620 368 59 2 1 352 3 370 0.0 609
Msa0746880 MtrunA17_Chr5g0394751 81.644 365 45 2 5 353 1 359 0.0 605
Msa0746880 MtrunA17_Chr5g0394811 79.890 363 57 1 7 353 116 478 0.0 605
Msa0746880 MtrunA17_Chr5g0394811 89.157 83 9 0 18 100 1 83 1.22e-43 157
Msa0746880 MtrunA17_Chr5g0394771 80.165 363 50 2 7 353 35 391 0.0 594
Msa0746880 MtrunA17_Chr3g0144001 68.056 360 95 2 10 353 8 363 0.0 506
Msa0746880 MtrunA17_Chr4g0070561 51.213 371 150 5 12 352 19 388 1.34e-128 374
Msa0746880 MtrunA17_Chr5g0394791 69.110 191 49 1 4 184 3 193 8.22e-91 270
Msa0746880 MtrunA17_Chr5g0394801 66.154 195 39 1 151 345 18 185 9.82e-85 256
Msa0746880 MtrunA17_Chr3g0130471 69.091 55 14 1 178 232 1 52 4.95e-18 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0746880 AT1G76690.1 74.255 369 79 1 1 353 3 371 0.0 572
Msa0746880 AT1G76680.1 73.611 360 79 1 10 353 10 369 0.0 557
Msa0746880 AT1G76680.2 68.831 385 79 2 10 353 10 394 0.0 543
Msa0746880 AT1G09400.1 67.273 330 86 2 18 331 1 324 2.78e-165 464
Msa0746880 AT1G09400.2 67.778 270 65 2 78 331 2 265 8.24e-132 377
Msa0746880 AT1G17990.1 68.359 256 62 3 10 250 7 258 1.88e-126 364
Msa0746880 AT1G18020.1 68.359 256 62 3 10 250 7 258 1.88e-126 364
Msa0746880 AT2G06050.2 48.800 375 157 5 12 352 12 385 4.23e-123 360
Msa0746880 AT2G06050.1 48.800 375 157 5 12 352 12 385 4.23e-123 360
Msa0746880 AT2G06050.3 48.800 375 157 5 12 352 12 385 4.23e-123 360
Msa0746880 AT1G17990.2 65.234 256 62 4 10 250 7 250 8.93e-118 342

Find 126 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATCTCTTTGGCAAATC+TGG 0.201994 5_1:+70502357 None:intergenic
ATATAAAGTCCCAATTCTTT+AGG 0.204540 5_1:+70502606 None:intergenic
TAAAGAATTGGGACTTTATA+TGG 0.215484 5_1:-70502604 Msa0746880:CDS
TCACCAACAGTTATCATTCT+TGG 0.270456 5_1:+70502534 None:intergenic
TATAAAGTCCCAATTCTTTA+GGG 0.287263 5_1:+70502607 None:intergenic
CTCCTCTAAACAAGTATAAC+AGG 0.287689 5_1:-70502326 Msa0746880:CDS
ATAAGAGGATTTGATTATAT+TGG 0.291626 5_1:-70501927 Msa0746880:three_prime_UTR
ATTTCATTTCAGAGTTGTTT+TGG 0.300909 5_1:-70504040 Msa0746880:intron
ATCCAAACACGCCGGGTATA+TGG 0.309625 5_1:-70503885 Msa0746880:CDS
AAAGGCACTTTCATGGTTGC+AGG 0.311740 5_1:-70502465 Msa0746880:CDS
TGGAATCTCCTCACTAAATA+AGG 0.319627 5_1:-70502216 Msa0746880:three_prime_UTR
GCTTACTCTTGCTAATGCTT+TGG 0.322777 5_1:-70502105 Msa0746880:three_prime_UTR
GTTAATGCCCTCAATAAATA+TGG 0.323996 5_1:-70502582 Msa0746880:CDS
TCCCTGTTATACTTGTTTAG+AGG 0.330923 5_1:+70502324 None:intergenic
TACGTTCCTGATCCAGTTCT+AGG 0.338102 5_1:-70502294 Msa0746880:CDS
CTCATTGGCACAAGGCTGTC+GGG 0.340556 5_1:+70502498 None:intergenic
GTCCATATACCCGGCGTGTT+TGG 0.348909 5_1:+70503883 None:intergenic
TATGAGAAGACCACCTTTAG+AGG 0.360557 5_1:+70503945 None:intergenic
AGACTCCAACCCTAAAGAAT+TGG 0.376017 5_1:-70502616 Msa0746880:CDS
GTGCAAATTGCAGGATTTGA+TGG 0.377428 5_1:-70502840 Msa0746880:intron
TTGAATTTGCCCATCTTGTA+AGG 0.380236 5_1:+70504175 None:intergenic
CCTTTGAAGGCCTTTCTCAT+TGG 0.383217 5_1:+70502483 None:intergenic
GGCCTTCAAAGGCACTTTCA+TGG 0.385984 5_1:-70502472 Msa0746880:CDS
TCATGAACAGCATCTACAAT+AGG 0.392438 5_1:+70503835 None:intergenic
TCAACGCCATAGCTGAAAAC+AGG 0.396930 5_1:-70502419 Msa0746880:CDS
GCATCAAGTGCAAATCTCTT+TGG 0.407422 5_1:+70502348 None:intergenic
GATATTGGTGCTTGCCCATC+CGG 0.412505 5_1:+70503159 None:intergenic
CGGTTACTTCATTCAAGAAA+AGG 0.415590 5_1:+70502258 None:intergenic
ATACCATTACTTCGAATTTG+TGG 0.416930 5_1:+70503114 None:intergenic
GAACCGTTGTCGGTTTGCTT+TGG 0.420051 5_1:-70502724 Msa0746880:CDS
CTGAAGTCATTGACAATGTT+CGG 0.421977 5_1:+70503042 None:intergenic
CATTTACAAAATGTGTGAAC+TGG 0.425857 5_1:+70502080 None:intergenic
TGCAAATTGCAGGATTTGAT+GGG 0.429144 5_1:-70502839 Msa0746880:intron
AAAGAATACCATATTTATTG+AGG 0.434046 5_1:+70502574 None:intergenic
TCATCTGTCCTTAGCCGCCT+TGG 0.434930 5_1:+70503069 None:intergenic
GCAAATTCAATCTATCTCAT+AGG 0.435780 5_1:-70504162 Msa0746880:intron
AACCATGAAAGTGCCTTTGA+AGG 0.438354 5_1:+70502470 None:intergenic
CTCAACTTCAGTACAGGAAA+TGG 0.440662 5_1:-70504236 Msa0746880:exon
GTCAGAGACACCGGTAGCTT+CGG 0.447363 5_1:+70503921 None:intergenic
AGTGGAAAGTGCAGGCGGTT+TGG 0.449520 5_1:+70504296 None:intergenic
GAGATAGGAACAGAAAGAGT+TGG 0.455231 5_1:-70502678 Msa0746880:CDS
TTCAACCTCAACTTCAGTAC+AGG 0.468067 5_1:-70504242 Msa0746880:five_prime_UTR
TCTCATTGGCACAAGGCTGT+CGG 0.469927 5_1:+70502497 None:intergenic
GACTCCAACCCTAAAGAATT+GGG 0.474283 5_1:-70502615 Msa0746880:CDS
GGAGGTTACGATCGAAATGA+TGG 0.474346 5_1:-70502444 Msa0746880:CDS
AGGCTCTCTGAGAGTAATAG+AGG 0.476512 5_1:+70503965 None:intergenic
AGGGCAGACCTAGTTGTATA+TGG 0.479108 5_1:-70502399 Msa0746880:CDS
TAGTCAGTATAACCTAGAAC+TGG 0.480015 5_1:+70502282 None:intergenic
ACTTCTTACTCCTTACAAGA+TGG 0.486533 5_1:-70504185 Msa0746880:CDS
TATTTCAGTGACAAACTGAA+TGG 0.489114 5_1:+70502166 None:intergenic
AAGAATACCATATTTATTGA+GGG 0.490058 5_1:+70502575 None:intergenic
CTAAAGAGCACGTTGAGGCT+TGG 0.492352 5_1:-70503861 Msa0746880:CDS
GGTTACTTCATTCAAGAAAA+GGG 0.499808 5_1:+70502259 None:intergenic
CATTCTGCATACTCTGCAAA+AGG 0.500218 5_1:+70502642 None:intergenic
AAGTCCCAATTCTTTAGGGT+TGG 0.500435 5_1:+70502611 None:intergenic
GAAGCTGTTGCAAATGAGAT+AGG 0.501045 5_1:-70502693 Msa0746880:CDS
TAGAGGATAGCATGAGGTTG+TGG 0.502110 5_1:+70503982 None:intergenic
CAGCCTTGTGCCAATGAGAA+AGG 0.506956 5_1:-70502493 Msa0746880:CDS
TAAGGAGTAAGAAGTGGAAT+GGG 0.514396 5_1:+70504193 None:intergenic
TGAAAGATAAAGTGAATGAC+AGG 0.515619 5_1:-70502773 Msa0746880:CDS
CATTTCCTGTACTGAAGTTG+AGG 0.516207 5_1:+70504237 None:intergenic
GTATAACCTAGAACTGGATC+AGG 0.517171 5_1:+70502288 None:intergenic
GCAAGAAATGCTATTGAAGC+TGG 0.517901 5_1:-70503012 Msa0746880:intron
GGCTTGTCTGTGGAAGATAT+TGG 0.523697 5_1:+70503144 None:intergenic
AAACCACAAATTCGAAGTAA+TGG 0.528619 5_1:-70503117 Msa0746880:CDS
GTAAGGAGTAAGAAGTGGAA+TGG 0.528759 5_1:+70504192 None:intergenic
GATCCCTTGAGAACCGTTGT+CGG 0.529555 5_1:-70502734 Msa0746880:CDS
TTTGATGGGGTTGAAATCCA+TGG 0.529668 5_1:-70502825 Msa0746880:CDS
CTTTCATGAATTGTTCAAGT+AGG 0.530510 5_1:+70502790 None:intergenic
GTTGAAATCCATGGAGCTCA+TGG 0.532007 5_1:-70502816 Msa0746880:CDS
CAAACCGACAACGGTTCTCA+AGG 0.533263 5_1:+70502730 None:intergenic
TAGTGAGGAGATTCCACACT+TGG 0.535155 5_1:+70502223 None:intergenic
TCTGTCCTTAGCCGCCTTGG+TGG 0.535739 5_1:+70503072 None:intergenic
TTGAGCAGTGTCAGAGACAC+CGG 0.539225 5_1:+70503912 None:intergenic
CTTCTTACTCCTTACAAGAT+GGG 0.539764 5_1:-70504184 Msa0746880:CDS
TCACACCACCAAGGCGGCTA+AGG 0.540861 5_1:-70503077 Msa0746880:CDS
ATTCTCAACAGTTTATCAGC+CGG 0.545602 5_1:-70503178 Msa0746880:intron
CAACAGTTTATCAGCCGGAT+GGG 0.548494 5_1:-70503173 Msa0746880:intron
AATGACAGGACAGATGAGTA+TGG 0.553924 5_1:-70502759 Msa0746880:CDS
TCAACAGTTTATCAGCCGGA+TGG 0.554883 5_1:-70503174 Msa0746880:intron
TACTCTCAGAGAGCCTCTAA+AGG 0.554945 5_1:-70503958 Msa0746880:CDS
ACCTAGACGGATTATTTGAA+AGG 0.555324 5_1:-70504330 Msa0746880:five_prime_UTR
AGGCCTTTCTCATTGGCACA+AGG 0.555706 5_1:+70502490 None:intergenic
CTTCTCATAGCCGAAGCTAC+CGG 0.560076 5_1:-70503931 Msa0746880:CDS
CAAGGCTATCCAAACACGCC+GGG 0.568991 5_1:-70503892 Msa0746880:CDS
AAACTAAAAGTGGAAAGTGC+AGG 0.574102 5_1:+70504288 None:intergenic
CCAATGAGAAAGGCCTTCAA+AGG 0.575485 5_1:-70502483 Msa0746880:CDS
ACACTTGGATGCTACAGCAC+CGG 0.578230 5_1:+70502238 None:intergenic
TGGTATTCTTTATTGTCACA+TGG 0.580029 5_1:-70502562 Msa0746880:CDS
TCATTGGCACAAGGCTGTCG+GGG 0.584370 5_1:+70502499 None:intergenic
ACCTTTCAAATAATCCGTCT+AGG 0.587568 5_1:+70504329 None:intergenic
GGCACTTTCATGGTTGCAGG+AGG 0.593746 5_1:-70502462 Msa0746880:CDS
GTAGGTAGCCATGAGCTCCA+TGG 0.595976 5_1:+70502808 None:intergenic
TTTGCAGAGTATGCAGAATG+TGG 0.596323 5_1:-70502639 Msa0746880:CDS
ATTTACAAAATGTGTGAACT+GGG 0.598647 5_1:+70502081 None:intergenic
CTCACAAGACAAAGATCCTA+CGG 0.598712 5_1:-70504012 Msa0746880:CDS
ACTTCAGTACAGGAAATGGC+TGG 0.601525 5_1:-70504232 Msa0746880:exon
ATCTTGTAAGGAGTAAGAAG+TGG 0.605352 5_1:+70504187 None:intergenic
GCAAATTGCAGGATTTGATG+GGG 0.608055 5_1:-70502838 Msa0746880:intron
ATGGCATAAAGCAATTTGCA+AGG 0.617217 5_1:+70502185 None:intergenic
CTTCCAAAGCAAACCGACAA+CGG 0.620487 5_1:+70502721 None:intergenic
GGTGTCTCTGACACTGCTCA+AGG 0.621150 5_1:-70503910 Msa0746880:CDS
TGGCATAAAGCAATTTGCAA+GGG 0.621159 5_1:+70502186 None:intergenic
ACATATGGAACGAACCTAGA+CGG 0.621801 5_1:-70504343 None:intergenic
ACAAACGACCATATACAACT+AGG 0.621826 5_1:+70502391 None:intergenic
AAACCGACAACGGTTCTCAA+GGG 0.626011 5_1:+70502731 None:intergenic
TGCTCTTTAGTCCATATACC+CGG 0.626306 5_1:+70503874 None:intergenic
CAACGCCATAGCTGAAAACA+GGG 0.626950 5_1:-70502418 Msa0746880:CDS
GTAGATGCTGTTCATGACAA+AGG 0.628826 5_1:-70503829 Msa0746880:CDS
GAGGTTACGATCGAAATGAT+GGG 0.630066 5_1:-70502443 Msa0746880:CDS
GATAATGACCTTATTTAGTG+AGG 0.630521 5_1:+70502208 None:intergenic
TATTCTTTATTGTCACATGG+TGG 0.639708 5_1:-70502559 Msa0746880:CDS
TAGGATCTTTGTCTTGTGAG+TGG 0.640382 5_1:+70504015 None:intergenic
TCCTCTAAACAAGTATAACA+GGG 0.645269 5_1:-70502325 Msa0746880:CDS
GACAGGACAGATGAGTATGG+TGG 0.649651 5_1:-70502756 Msa0746880:CDS
TCAAGGCTATCCAAACACGC+CGG 0.650428 5_1:-70503893 Msa0746880:CDS
AGGTTGTGGAACATTGCCGT+AGG 0.656729 5_1:+70503996 None:intergenic
TCTCAGAGAGCCTCTAAAGG+TGG 0.663690 5_1:-70503955 Msa0746880:CDS
GGTGCTGTAGCATCCAAGTG+TGG 0.676085 5_1:-70502236 Msa0746880:three_prime_UTR
CTAAAAGTGGAAAGTGCAGG+CGG 0.679672 5_1:+70504291 None:intergenic
GAGTAATAGAGGATAGCATG+AGG 0.689366 5_1:+70503976 None:intergenic
GAACCAAGAATGATAACTGT+TGG 0.691135 5_1:-70502537 Msa0746880:CDS
TTGCAAAATTCACACCACCA+AGG 0.719184 5_1:-70503086 Msa0746880:CDS
ATGGACTAAAGAGCACGTTG+AGG 0.722206 5_1:-70503866 Msa0746880:CDS
CAAAATTCACACCACCAAGG+CGG 0.741166 5_1:-70503083 Msa0746880:CDS
GATGCTGTTCATGACAAAGG+CGG 0.776205 5_1:-70503826 Msa0746880:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTGTTTACAATAAAA+GGG - chr5_1:70502919-70502938 Msa0746880:intron 10.0%
!!! TATCTTAATTTTATAAAATC+AGG + chr5_1:70504291-70504310 None:intergenic 10.0%
!! TAATATTGTTTACAATAAAA+GGG - chr5_1:70502919-70502938 Msa0746880:intron 10.0%
!!! TATCTTAATTTTATAAAATC+AGG + chr5_1:70504291-70504310 None:intergenic 10.0%
!! CTAATATTGTTTACAATAAA+AGG - chr5_1:70502918-70502937 Msa0746880:intron 15.0%
!! CTAATATTGTTTACAATAAA+AGG - chr5_1:70502918-70502937 Msa0746880:intron 15.0%
!!! TTTTATGTTGAAACTAAAAG+TGG + chr5_1:70501977-70501996 None:intergenic 20.0%
!! AATATGGAATGATAAATGAA+TGG + chr5_1:70502133-70502152 None:intergenic 20.0%
!! AACATGACATAAAACATAAA+CGG - chr5_1:70502649-70502668 Msa0746880:CDS 20.0%
!! AATATGATATGATATGTTCT+AGG - chr5_1:70502772-70502791 Msa0746880:CDS 20.0%
!! TTGTTATCGAGTATTATTAA+GGG - chr5_1:70502963-70502982 Msa0746880:intron 20.0%
!! AATTATGTAACATACTTAGT+GGG - chr5_1:70503389-70503408 Msa0746880:intron 20.0%
!! AAGAATACCATATTTATTGA+GGG + chr5_1:70503680-70503699 None:intergenic 20.0%
!! AAAGAATACCATATTTATTG+AGG + chr5_1:70503681-70503700 None:intergenic 20.0%
!! ATAAGAGGATTTGATTATAT+TGG - chr5_1:70504325-70504344 Msa0746880:five_prime_UTR 20.0%
!!! TTTTATGTTGAAACTAAAAG+TGG + chr5_1:70501977-70501996 None:intergenic 20.0%
!! AATATGGAATGATAAATGAA+TGG + chr5_1:70502133-70502152 None:intergenic 20.0%
!! AACATGACATAAAACATAAA+CGG - chr5_1:70502649-70502668 Msa0746880:CDS 20.0%
!! AATATGATATGATATGTTCT+AGG - chr5_1:70502772-70502791 Msa0746880:CDS 20.0%
!! TTGTTATCGAGTATTATTAA+GGG - chr5_1:70502963-70502982 Msa0746880:intron 20.0%
!! AATTATGTAACATACTTAGT+GGG - chr5_1:70503389-70503408 Msa0746880:intron 20.0%
!! AAGAATACCATATTTATTGA+GGG + chr5_1:70503680-70503699 None:intergenic 20.0%
!! AAAGAATACCATATTTATTG+AGG + chr5_1:70503681-70503700 None:intergenic 20.0%
!! ATAAGAGGATTTGATTATAT+TGG - chr5_1:70504325-70504344 Msa0746880:five_prime_UTR 20.0%
! TGAGCAATTGAAATTGAATA+TGG + chr5_1:70502149-70502168 None:intergenic 25.0%
!! ATTTCATTTCAGAGTTGTTT+TGG - chr5_1:70502212-70502231 Msa0746880:three_prime_UTR 25.0%
! ACATGACATAAAACATAAAC+GGG - chr5_1:70502650-70502669 Msa0746880:CDS 25.0%
!!! TACATTTTGACTAAAGACAT+AGG + chr5_1:70502714-70502733 None:intergenic 25.0%
!! CAAAAGTATATTTGTACAAC+AGG + chr5_1:70502879-70502898 None:intergenic 25.0%
!! CTGTTGTACAAATATACTTT+TGG - chr5_1:70502877-70502896 Msa0746880:intron 25.0%
!! TTACAATAAAAGGGTATGAT+TGG - chr5_1:70502928-70502947 Msa0746880:intron 25.0%
! GTTGTTATCGAGTATTATTA+AGG - chr5_1:70502962-70502981 Msa0746880:intron 25.0%
! TGTTATCGAGTATTATTAAG+GGG - chr5_1:70502964-70502983 Msa0746880:intron 25.0%
! ATCACACATAAATGTTCTAA+TGG - chr5_1:70503011-70503030 Msa0746880:intron 25.0%
! ATAAACTGTTGAGAATAACA+TGG + chr5_1:70503070-70503089 None:intergenic 25.0%
!!! GAGATTTTTGTTACTTTAGA+TGG - chr5_1:70503350-70503369 Msa0746880:intron 25.0%
! CACTAAGTATGTTACATAAT+TGG + chr5_1:70503390-70503409 None:intergenic 25.0%
! CAATTATGTAACATACTTAG+TGG - chr5_1:70503388-70503407 Msa0746880:intron 25.0%
! ATTATGTAACATACTTAGTG+GGG - chr5_1:70503390-70503409 Msa0746880:intron 25.0%
! TATAAAGTCCCAATTCTTTA+GGG + chr5_1:70503648-70503667 None:intergenic 25.0%
! ATATAAAGTCCCAATTCTTT+AGG + chr5_1:70503649-70503668 None:intergenic 25.0%
! TAAAGAATTGGGACTTTATA+TGG - chr5_1:70503648-70503667 Msa0746880:intron 25.0%
! ATTTACAAAATGTGTGAACT+GGG + chr5_1:70504174-70504193 None:intergenic 25.0%
! TGAGCAATTGAAATTGAATA+TGG + chr5_1:70502149-70502168 None:intergenic 25.0%
!! ATTTCATTTCAGAGTTGTTT+TGG - chr5_1:70502212-70502231 Msa0746880:three_prime_UTR 25.0%
! ACATGACATAAAACATAAAC+GGG - chr5_1:70502650-70502669 Msa0746880:CDS 25.0%
!!! TACATTTTGACTAAAGACAT+AGG + chr5_1:70502714-70502733 None:intergenic 25.0%
!! CAAAAGTATATTTGTACAAC+AGG + chr5_1:70502879-70502898 None:intergenic 25.0%
!! CTGTTGTACAAATATACTTT+TGG - chr5_1:70502877-70502896 Msa0746880:intron 25.0%
!! TTACAATAAAAGGGTATGAT+TGG - chr5_1:70502928-70502947 Msa0746880:intron 25.0%
! GTTGTTATCGAGTATTATTA+AGG - chr5_1:70502962-70502981 Msa0746880:intron 25.0%
! TGTTATCGAGTATTATTAAG+GGG - chr5_1:70502964-70502983 Msa0746880:intron 25.0%
! ATCACACATAAATGTTCTAA+TGG - chr5_1:70503011-70503030 Msa0746880:intron 25.0%
! ATAAACTGTTGAGAATAACA+TGG + chr5_1:70503070-70503089 None:intergenic 25.0%
!!! GAGATTTTTGTTACTTTAGA+TGG - chr5_1:70503350-70503369 Msa0746880:intron 25.0%
! CACTAAGTATGTTACATAAT+TGG + chr5_1:70503390-70503409 None:intergenic 25.0%
! CAATTATGTAACATACTTAG+TGG - chr5_1:70503388-70503407 Msa0746880:intron 25.0%
! ATTATGTAACATACTTAGTG+GGG - chr5_1:70503390-70503409 Msa0746880:intron 25.0%
! TATAAAGTCCCAATTCTTTA+GGG + chr5_1:70503648-70503667 None:intergenic 25.0%
! ATATAAAGTCCCAATTCTTT+AGG + chr5_1:70503649-70503668 None:intergenic 25.0%
! TAAAGAATTGGGACTTTATA+TGG - chr5_1:70503648-70503667 Msa0746880:intron 25.0%
! ATTTACAAAATGTGTGAACT+GGG + chr5_1:70504174-70504193 None:intergenic 25.0%
GCAAATTCAATCTATCTCAT+AGG - chr5_1:70502090-70502109 Msa0746880:three_prime_UTR 30.0%
GAGTAAATAACACAAACACA+TGG + chr5_1:70502192-70502211 None:intergenic 30.0%
! GTGTGTTTTTCTGTCAAATT+TGG - chr5_1:70502448-70502467 Msa0746880:CDS 30.0%
!! TAGGAGTTATTCGTTTTTCT+TGG - chr5_1:70502604-70502623 Msa0746880:CDS 30.0%
CATGACATAAAACATAAACG+GGG - chr5_1:70502651-70502670 Msa0746880:CDS 30.0%
!! GGCATTTTAATCAGAGTAAT+AGG + chr5_1:70502693-70502712 None:intergenic 30.0%
CTTTAGTCAAAATGTAACTG+CGG - chr5_1:70502718-70502737 Msa0746880:CDS 30.0%
GTTATCGAGTATTATTAAGG+GGG - chr5_1:70502965-70502984 Msa0746880:intron 30.0%
AAACCACAAATTCGAAGTAA+TGG - chr5_1:70503135-70503154 Msa0746880:CDS 30.0%
ATACCATTACTTCGAATTTG+TGG + chr5_1:70503141-70503160 None:intergenic 30.0%
CTTTCATGAATTGTTCAAGT+AGG + chr5_1:70503465-70503484 None:intergenic 30.0%
TGAAAGATAAAGTGAATGAC+AGG - chr5_1:70503479-70503498 Msa0746880:intron 30.0%
GTTAATGCCCTCAATAAATA+TGG - chr5_1:70503670-70503689 Msa0746880:intron 30.0%
TGGTATTCTTTATTGTCACA+TGG - chr5_1:70503690-70503709 Msa0746880:intron 30.0%
TATTCTTTATTGTCACATGG+TGG - chr5_1:70503693-70503712 Msa0746880:intron 30.0%
TCCTCTAAACAAGTATAACA+GGG - chr5_1:70503927-70503946 Msa0746880:CDS 30.0%
GGTTACTTCATTCAAGAAAA+GGG + chr5_1:70503996-70504015 None:intergenic 30.0%
! CTTTTCTTGAATGAAGTAAC+CGG - chr5_1:70503995-70504014 Msa0746880:CDS 30.0%
! GATAATGACCTTATTTAGTG+AGG + chr5_1:70504047-70504066 None:intergenic 30.0%
TATTTCAGTGACAAACTGAA+TGG + chr5_1:70504089-70504108 None:intergenic 30.0%
CATTTACAAAATGTGTGAAC+TGG + chr5_1:70504175-70504194 None:intergenic 30.0%
! CAGTTCACACATTTTGTAAA+TGG - chr5_1:70504173-70504192 Msa0746880:CDS 30.0%
! ACACATTTTGTAAATGGTCA+GGG - chr5_1:70504179-70504198 Msa0746880:CDS 30.0%
! TTTTGTCTAACACTTCTTGT+TGG + chr5_1:70504260-70504279 None:intergenic 30.0%
! ATGAATTTTGCGCTAATAAG+AGG - chr5_1:70504310-70504329 Msa0746880:five_prime_UTR 30.0%
GCAAATTCAATCTATCTCAT+AGG - chr5_1:70502090-70502109 Msa0746880:three_prime_UTR 30.0%
GAGTAAATAACACAAACACA+TGG + chr5_1:70502192-70502211 None:intergenic 30.0%
! GTGTGTTTTTCTGTCAAATT+TGG - chr5_1:70502448-70502467 Msa0746880:CDS 30.0%
!! TAGGAGTTATTCGTTTTTCT+TGG - chr5_1:70502604-70502623 Msa0746880:CDS 30.0%
CATGACATAAAACATAAACG+GGG - chr5_1:70502651-70502670 Msa0746880:CDS 30.0%
!! GGCATTTTAATCAGAGTAAT+AGG + chr5_1:70502693-70502712 None:intergenic 30.0%
CTTTAGTCAAAATGTAACTG+CGG - chr5_1:70502718-70502737 Msa0746880:CDS 30.0%
GTTATCGAGTATTATTAAGG+GGG - chr5_1:70502965-70502984 Msa0746880:intron 30.0%
AAACCACAAATTCGAAGTAA+TGG - chr5_1:70503135-70503154 Msa0746880:CDS 30.0%
ATACCATTACTTCGAATTTG+TGG + chr5_1:70503141-70503160 None:intergenic 30.0%
CTTTCATGAATTGTTCAAGT+AGG + chr5_1:70503465-70503484 None:intergenic 30.0%
TGAAAGATAAAGTGAATGAC+AGG - chr5_1:70503479-70503498 Msa0746880:intron 30.0%
GTTAATGCCCTCAATAAATA+TGG - chr5_1:70503670-70503689 Msa0746880:intron 30.0%
TGGTATTCTTTATTGTCACA+TGG - chr5_1:70503690-70503709 Msa0746880:intron 30.0%
TATTCTTTATTGTCACATGG+TGG - chr5_1:70503693-70503712 Msa0746880:intron 30.0%
TCCTCTAAACAAGTATAACA+GGG - chr5_1:70503927-70503946 Msa0746880:CDS 30.0%
GGTTACTTCATTCAAGAAAA+GGG + chr5_1:70503996-70504015 None:intergenic 30.0%
! CTTTTCTTGAATGAAGTAAC+CGG - chr5_1:70503995-70504014 Msa0746880:CDS 30.0%
! GATAATGACCTTATTTAGTG+AGG + chr5_1:70504047-70504066 None:intergenic 30.0%
TATTTCAGTGACAAACTGAA+TGG + chr5_1:70504089-70504108 None:intergenic 30.0%
CATTTACAAAATGTGTGAAC+TGG + chr5_1:70504175-70504194 None:intergenic 30.0%
! CAGTTCACACATTTTGTAAA+TGG - chr5_1:70504173-70504192 Msa0746880:CDS 30.0%
! ACACATTTTGTAAATGGTCA+GGG - chr5_1:70504179-70504198 Msa0746880:CDS 30.0%
! TTTTGTCTAACACTTCTTGT+TGG + chr5_1:70504260-70504279 None:intergenic 30.0%
! ATGAATTTTGCGCTAATAAG+AGG - chr5_1:70504310-70504329 Msa0746880:five_prime_UTR 30.0%
!! ACCTAGACGGATTATTTGAA+AGG - chr5_1:70501922-70501941 Msa0746880:three_prime_UTR 35.0%
ACCTTTCAAATAATCCGTCT+AGG + chr5_1:70501926-70501945 None:intergenic 35.0%
! AAACTAAAAGTGGAAAGTGC+AGG + chr5_1:70501967-70501986 None:intergenic 35.0%
TAAGGAGTAAGAAGTGGAAT+GGG + chr5_1:70502062-70502081 None:intergenic 35.0%
ATCTTGTAAGGAGTAAGAAG+TGG + chr5_1:70502068-70502087 None:intergenic 35.0%
ACTTCTTACTCCTTACAAGA+TGG - chr5_1:70502067-70502086 Msa0746880:three_prime_UTR 35.0%
CTTCTTACTCCTTACAAGAT+GGG - chr5_1:70502068-70502087 Msa0746880:three_prime_UTR 35.0%
TTGAATTTGCCCATCTTGTA+AGG + chr5_1:70502080-70502099 None:intergenic 35.0%
TCATGAACAGCATCTACAAT+AGG + chr5_1:70502420-70502439 None:intergenic 35.0%
TTCTGTCAAATTTGGCATGT+TGG - chr5_1:70502456-70502475 Msa0746880:CDS 35.0%
ACCTCAAATCAATACTTGTG+TGG + chr5_1:70502555-70502574 None:intergenic 35.0%
!! ATTGATTTGAGGTTTCCTTG+TGG - chr5_1:70502562-70502581 Msa0746880:CDS 35.0%
ACTGAGTGAATTATGTGACT+AGG - chr5_1:70502585-70502604 Msa0746880:CDS 35.0%
AATGTAACTGCGGAAAGAAT+TGG - chr5_1:70502728-70502747 Msa0746880:CDS 35.0%
!! ATGATATGTTCTAGGACAGT+AGG - chr5_1:70502780-70502799 Msa0746880:CDS 35.0%
! CATTCAGTTTTCCTCACTTA+AGG + chr5_1:70502818-70502837 None:intergenic 35.0%
ATTCTCAACAGTTTATCAGC+CGG - chr5_1:70503074-70503093 Msa0746880:CDS 35.0%
!!! CTTCGAATTTGTGGTTTTAG+TGG + chr5_1:70503132-70503151 None:intergenic 35.0%
CTGAAGTCATTGACAATGTT+CGG + chr5_1:70503213-70503232 None:intergenic 35.0%
!! TTGTTACTTTAGATGGCACT+AGG - chr5_1:70503357-70503376 Msa0746880:intron 35.0%
TGCAAATTGCAGGATTTGAT+GGG - chr5_1:70503413-70503432 Msa0746880:intron 35.0%
GAACCAAGAATGATAACTGT+TGG - chr5_1:70503715-70503734 Msa0746880:intron 35.0%
TCACCAACAGTTATCATTCT+TGG + chr5_1:70503721-70503740 None:intergenic 35.0%
ACAAACGACCATATACAACT+AGG + chr5_1:70503864-70503883 None:intergenic 35.0%
CTCCTCTAAACAAGTATAAC+AGG - chr5_1:70503926-70503945 Msa0746880:CDS 35.0%
TCCCTGTTATACTTGTTTAG+AGG + chr5_1:70503931-70503950 None:intergenic 35.0%
TAGTCAGTATAACCTAGAAC+TGG + chr5_1:70503973-70503992 None:intergenic 35.0%
CGGTTACTTCATTCAAGAAA+AGG + chr5_1:70503997-70504016 None:intergenic 35.0%
TGGAATCTCCTCACTAAATA+AGG - chr5_1:70504036-70504055 Msa0746880:intron 35.0%
TGGCATAAAGCAATTTGCAA+GGG + chr5_1:70504069-70504088 None:intergenic 35.0%
ATGGCATAAAGCAATTTGCA+AGG + chr5_1:70504070-70504089 None:intergenic 35.0%
! CACACATTTTGTAAATGGTC+AGG - chr5_1:70504178-70504197 Msa0746880:CDS 35.0%
!! ACCTAGACGGATTATTTGAA+AGG - chr5_1:70501922-70501941 Msa0746880:three_prime_UTR 35.0%
ACCTTTCAAATAATCCGTCT+AGG + chr5_1:70501926-70501945 None:intergenic 35.0%
! AAACTAAAAGTGGAAAGTGC+AGG + chr5_1:70501967-70501986 None:intergenic 35.0%
TAAGGAGTAAGAAGTGGAAT+GGG + chr5_1:70502062-70502081 None:intergenic 35.0%
ATCTTGTAAGGAGTAAGAAG+TGG + chr5_1:70502068-70502087 None:intergenic 35.0%
ACTTCTTACTCCTTACAAGA+TGG - chr5_1:70502067-70502086 Msa0746880:three_prime_UTR 35.0%
CTTCTTACTCCTTACAAGAT+GGG - chr5_1:70502068-70502087 Msa0746880:three_prime_UTR 35.0%
TTGAATTTGCCCATCTTGTA+AGG + chr5_1:70502080-70502099 None:intergenic 35.0%
TCATGAACAGCATCTACAAT+AGG + chr5_1:70502420-70502439 None:intergenic 35.0%
TTCTGTCAAATTTGGCATGT+TGG - chr5_1:70502456-70502475 Msa0746880:CDS 35.0%
ACCTCAAATCAATACTTGTG+TGG + chr5_1:70502555-70502574 None:intergenic 35.0%
!! ATTGATTTGAGGTTTCCTTG+TGG - chr5_1:70502562-70502581 Msa0746880:CDS 35.0%
ACTGAGTGAATTATGTGACT+AGG - chr5_1:70502585-70502604 Msa0746880:CDS 35.0%
AATGTAACTGCGGAAAGAAT+TGG - chr5_1:70502728-70502747 Msa0746880:CDS 35.0%
!! ATGATATGTTCTAGGACAGT+AGG - chr5_1:70502780-70502799 Msa0746880:CDS 35.0%
! CATTCAGTTTTCCTCACTTA+AGG + chr5_1:70502818-70502837 None:intergenic 35.0%
ATTCTCAACAGTTTATCAGC+CGG - chr5_1:70503074-70503093 Msa0746880:CDS 35.0%
!!! CTTCGAATTTGTGGTTTTAG+TGG + chr5_1:70503132-70503151 None:intergenic 35.0%
CTGAAGTCATTGACAATGTT+CGG + chr5_1:70503213-70503232 None:intergenic 35.0%
!! TTGTTACTTTAGATGGCACT+AGG - chr5_1:70503357-70503376 Msa0746880:intron 35.0%
TGCAAATTGCAGGATTTGAT+GGG - chr5_1:70503413-70503432 Msa0746880:intron 35.0%
GAACCAAGAATGATAACTGT+TGG - chr5_1:70503715-70503734 Msa0746880:intron 35.0%
TCACCAACAGTTATCATTCT+TGG + chr5_1:70503721-70503740 None:intergenic 35.0%
ACAAACGACCATATACAACT+AGG + chr5_1:70503864-70503883 None:intergenic 35.0%
CTCCTCTAAACAAGTATAAC+AGG - chr5_1:70503926-70503945 Msa0746880:CDS 35.0%
TCCCTGTTATACTTGTTTAG+AGG + chr5_1:70503931-70503950 None:intergenic 35.0%
TAGTCAGTATAACCTAGAAC+TGG + chr5_1:70503973-70503992 None:intergenic 35.0%
CGGTTACTTCATTCAAGAAA+AGG + chr5_1:70503997-70504016 None:intergenic 35.0%
TGGAATCTCCTCACTAAATA+AGG - chr5_1:70504036-70504055 Msa0746880:intron 35.0%
TGGCATAAAGCAATTTGCAA+GGG + chr5_1:70504069-70504088 None:intergenic 35.0%
ATGGCATAAAGCAATTTGCA+AGG + chr5_1:70504070-70504089 None:intergenic 35.0%
! CACACATTTTGTAAATGGTC+AGG - chr5_1:70504178-70504197 Msa0746880:CDS 35.0%
TTCAACCTCAACTTCAGTAC+AGG - chr5_1:70502010-70502029 Msa0746880:three_prime_UTR 40.0%
CATTTCCTGTACTGAAGTTG+AGG + chr5_1:70502018-70502037 None:intergenic 40.0%
CTCAACTTCAGTACAGGAAA+TGG - chr5_1:70502016-70502035 Msa0746880:three_prime_UTR 40.0%
GTAAGGAGTAAGAAGTGGAA+TGG + chr5_1:70502063-70502082 None:intergenic 40.0%
TAGGATCTTTGTCTTGTGAG+TGG + chr5_1:70502240-70502259 None:intergenic 40.0%
CTCACAAGACAAAGATCCTA+CGG - chr5_1:70502240-70502259 Msa0746880:three_prime_UTR 40.0%
GAGTAATAGAGGATAGCATG+AGG + chr5_1:70502279-70502298 None:intergenic 40.0%
TATGAGAAGACCACCTTTAG+AGG + chr5_1:70502310-70502329 None:intergenic 40.0%
TGCTCTTTAGTCCATATACC+CGG + chr5_1:70502381-70502400 None:intergenic 40.0%
GTAGATGCTGTTCATGACAA+AGG - chr5_1:70502423-70502442 Msa0746880:CDS 40.0%
!! GCCACACAAGTATTGATTTG+AGG - chr5_1:70502551-70502570 Msa0746880:CDS 40.0%
CATAATTCACTCAGTCCACA+AGG + chr5_1:70502580-70502599 None:intergenic 40.0%
CACACATGTTACCTTAAGTG+AGG - chr5_1:70502804-70502823 Msa0746880:CDS 40.0%
TTGCAAAATTCACACCACCA+AGG - chr5_1:70503166-70503185 Msa0746880:CDS 40.0%
GCAAGAAATGCTATTGAAGC+TGG - chr5_1:70503240-70503259 Msa0746880:intron 40.0%
GTGCAAATTGCAGGATTTGA+TGG - chr5_1:70503412-70503431 Msa0746880:intron 40.0%
GCAAATTGCAGGATTTGATG+GGG - chr5_1:70503414-70503433 Msa0746880:intron 40.0%
TTTGATGGGGTTGAAATCCA+TGG - chr5_1:70503427-70503446 Msa0746880:intron 40.0%
AATGACAGGACAGATGAGTA+TGG - chr5_1:70503493-70503512 Msa0746880:intron 40.0%
GAAGCTGTTGCAAATGAGAT+AGG - chr5_1:70503559-70503578 Msa0746880:intron 40.0%
GAGATAGGAACAGAAAGAGT+TGG - chr5_1:70503574-70503593 Msa0746880:intron 40.0%
CATTCTGCATACTCTGCAAA+AGG + chr5_1:70503613-70503632 None:intergenic 40.0%
TTTGCAGAGTATGCAGAATG+TGG - chr5_1:70503613-70503632 Msa0746880:intron 40.0%
AGACTCCAACCCTAAAGAAT+TGG - chr5_1:70503636-70503655 Msa0746880:intron 40.0%
GACTCCAACCCTAAAGAATT+GGG - chr5_1:70503637-70503656 Msa0746880:intron 40.0%
!! AAGTCCCAATTCTTTAGGGT+TGG + chr5_1:70503644-70503663 None:intergenic 40.0%
!! AACCATGAAAGTGCCTTTGA+AGG + chr5_1:70503785-70503804 None:intergenic 40.0%
GAGGTTACGATCGAAATGAT+GGG - chr5_1:70503809-70503828 Msa0746880:intron 40.0%
GCAAATCTCTTTGGCAAATC+TGG + chr5_1:70503898-70503917 None:intergenic 40.0%
GCATCAAGTGCAAATCTCTT+TGG + chr5_1:70503907-70503926 None:intergenic 40.0%
GTATAACCTAGAACTGGATC+AGG + chr5_1:70503967-70503986 None:intergenic 40.0%
GCTTACTCTTGCTAATGCTT+TGG - chr5_1:70504147-70504166 Msa0746880:intron 40.0%
TTCAACCTCAACTTCAGTAC+AGG - chr5_1:70502010-70502029 Msa0746880:three_prime_UTR 40.0%
CATTTCCTGTACTGAAGTTG+AGG + chr5_1:70502018-70502037 None:intergenic 40.0%
CTCAACTTCAGTACAGGAAA+TGG - chr5_1:70502016-70502035 Msa0746880:three_prime_UTR 40.0%
GTAAGGAGTAAGAAGTGGAA+TGG + chr5_1:70502063-70502082 None:intergenic 40.0%
TAGGATCTTTGTCTTGTGAG+TGG + chr5_1:70502240-70502259 None:intergenic 40.0%
CTCACAAGACAAAGATCCTA+CGG - chr5_1:70502240-70502259 Msa0746880:three_prime_UTR 40.0%
GAGTAATAGAGGATAGCATG+AGG + chr5_1:70502279-70502298 None:intergenic 40.0%
TATGAGAAGACCACCTTTAG+AGG + chr5_1:70502310-70502329 None:intergenic 40.0%
TGCTCTTTAGTCCATATACC+CGG + chr5_1:70502381-70502400 None:intergenic 40.0%
GTAGATGCTGTTCATGACAA+AGG - chr5_1:70502423-70502442 Msa0746880:CDS 40.0%
!! GCCACACAAGTATTGATTTG+AGG - chr5_1:70502551-70502570 Msa0746880:CDS 40.0%
CATAATTCACTCAGTCCACA+AGG + chr5_1:70502580-70502599 None:intergenic 40.0%
CACACATGTTACCTTAAGTG+AGG - chr5_1:70502804-70502823 Msa0746880:CDS 40.0%
TTGCAAAATTCACACCACCA+AGG - chr5_1:70503166-70503185 Msa0746880:CDS 40.0%
GCAAGAAATGCTATTGAAGC+TGG - chr5_1:70503240-70503259 Msa0746880:intron 40.0%
GTGCAAATTGCAGGATTTGA+TGG - chr5_1:70503412-70503431 Msa0746880:intron 40.0%
GCAAATTGCAGGATTTGATG+GGG - chr5_1:70503414-70503433 Msa0746880:intron 40.0%
TTTGATGGGGTTGAAATCCA+TGG - chr5_1:70503427-70503446 Msa0746880:intron 40.0%
AATGACAGGACAGATGAGTA+TGG - chr5_1:70503493-70503512 Msa0746880:intron 40.0%
GAAGCTGTTGCAAATGAGAT+AGG - chr5_1:70503559-70503578 Msa0746880:intron 40.0%
GAGATAGGAACAGAAAGAGT+TGG - chr5_1:70503574-70503593 Msa0746880:intron 40.0%
CATTCTGCATACTCTGCAAA+AGG + chr5_1:70503613-70503632 None:intergenic 40.0%
TTTGCAGAGTATGCAGAATG+TGG - chr5_1:70503613-70503632 Msa0746880:intron 40.0%
AGACTCCAACCCTAAAGAAT+TGG - chr5_1:70503636-70503655 Msa0746880:intron 40.0%
GACTCCAACCCTAAAGAATT+GGG - chr5_1:70503637-70503656 Msa0746880:intron 40.0%
!! AAGTCCCAATTCTTTAGGGT+TGG + chr5_1:70503644-70503663 None:intergenic 40.0%
!! AACCATGAAAGTGCCTTTGA+AGG + chr5_1:70503785-70503804 None:intergenic 40.0%
GAGGTTACGATCGAAATGAT+GGG - chr5_1:70503809-70503828 Msa0746880:intron 40.0%
GCAAATCTCTTTGGCAAATC+TGG + chr5_1:70503898-70503917 None:intergenic 40.0%
GCATCAAGTGCAAATCTCTT+TGG + chr5_1:70503907-70503926 None:intergenic 40.0%
GTATAACCTAGAACTGGATC+AGG + chr5_1:70503967-70503986 None:intergenic 40.0%
GCTTACTCTTGCTAATGCTT+TGG - chr5_1:70504147-70504166 Msa0746880:intron 40.0%
! CTAAAAGTGGAAAGTGCAGG+CGG + chr5_1:70501964-70501983 None:intergenic 45.0%
ACTTCAGTACAGGAAATGGC+TGG - chr5_1:70502020-70502039 Msa0746880:three_prime_UTR 45.0%
TAGAGGATAGCATGAGGTTG+TGG + chr5_1:70502273-70502292 None:intergenic 45.0%
! AGGCTCTCTGAGAGTAATAG+AGG + chr5_1:70502290-70502309 None:intergenic 45.0%
TACTCTCAGAGAGCCTCTAA+AGG - chr5_1:70502294-70502313 Msa0746880:CDS 45.0%
! ATGGACTAAAGAGCACGTTG+AGG - chr5_1:70502386-70502405 Msa0746880:CDS 45.0%
GATGCTGTTCATGACAAAGG+CGG - chr5_1:70502426-70502445 Msa0746880:CDS 45.0%
GTTGGAAGAGTTTCTGATGC+TGG - chr5_1:70502474-70502493 Msa0746880:CDS 45.0%
!! CTCGCGGTACTTTTGTTTAC+TGG + chr5_1:70502529-70502548 None:intergenic 45.0%
AATACTTGTGTGGCAACTCG+CGG + chr5_1:70502545-70502564 None:intergenic 45.0%
TCAACAGTTTATCAGCCGGA+TGG - chr5_1:70503078-70503097 Msa0746880:CDS 45.0%
CAACAGTTTATCAGCCGGAT+GGG - chr5_1:70503079-70503098 Msa0746880:CDS 45.0%
GGCTTGTCTGTGGAAGATAT+TGG + chr5_1:70503111-70503130 None:intergenic 45.0%
!!! TGGTTTTAGTGGCTTGTCTG+TGG + chr5_1:70503121-70503140 None:intergenic 45.0%
CAAAATTCACACCACCAAGG+CGG - chr5_1:70503169-70503188 Msa0746880:CDS 45.0%
GTTGAAATCCATGGAGCTCA+TGG - chr5_1:70503436-70503455 Msa0746880:intron 45.0%
AAACCGACAACGGTTCTCAA+GGG + chr5_1:70503524-70503543 None:intergenic 45.0%
CTTCCAAAGCAAACCGACAA+CGG + chr5_1:70503534-70503553 None:intergenic 45.0%
! CCTTTGAAGGCCTTTCTCAT+TGG + chr5_1:70503772-70503791 None:intergenic 45.0%
CCAATGAGAAAGGCCTTCAA+AGG - chr5_1:70503769-70503788 Msa0746880:intron 45.0%
!! AAAGGCACTTTCATGGTTGC+AGG - chr5_1:70503787-70503806 Msa0746880:intron 45.0%
GGAGGTTACGATCGAAATGA+TGG - chr5_1:70503808-70503827 Msa0746880:intron 45.0%
TCAACGCCATAGCTGAAAAC+AGG - chr5_1:70503833-70503852 Msa0746880:CDS 45.0%
CAACGCCATAGCTGAAAACA+GGG - chr5_1:70503834-70503853 Msa0746880:CDS 45.0%
AGGGCAGACCTAGTTGTATA+TGG - chr5_1:70503853-70503872 Msa0746880:CDS 45.0%
TACGTTCCTGATCCAGTTCT+AGG - chr5_1:70503958-70503977 Msa0746880:CDS 45.0%
TAGTGAGGAGATTCCACACT+TGG + chr5_1:70504032-70504051 None:intergenic 45.0%
! CTAAAAGTGGAAAGTGCAGG+CGG + chr5_1:70501964-70501983 None:intergenic 45.0%
ACTTCAGTACAGGAAATGGC+TGG - chr5_1:70502020-70502039 Msa0746880:three_prime_UTR 45.0%
TAGAGGATAGCATGAGGTTG+TGG + chr5_1:70502273-70502292 None:intergenic 45.0%
! AGGCTCTCTGAGAGTAATAG+AGG + chr5_1:70502290-70502309 None:intergenic 45.0%
TACTCTCAGAGAGCCTCTAA+AGG - chr5_1:70502294-70502313 Msa0746880:CDS 45.0%
! ATGGACTAAAGAGCACGTTG+AGG - chr5_1:70502386-70502405 Msa0746880:CDS 45.0%
GATGCTGTTCATGACAAAGG+CGG - chr5_1:70502426-70502445 Msa0746880:CDS 45.0%
GTTGGAAGAGTTTCTGATGC+TGG - chr5_1:70502474-70502493 Msa0746880:CDS 45.0%
!! CTCGCGGTACTTTTGTTTAC+TGG + chr5_1:70502529-70502548 None:intergenic 45.0%
AATACTTGTGTGGCAACTCG+CGG + chr5_1:70502545-70502564 None:intergenic 45.0%
TCAACAGTTTATCAGCCGGA+TGG - chr5_1:70503078-70503097 Msa0746880:CDS 45.0%
CAACAGTTTATCAGCCGGAT+GGG - chr5_1:70503079-70503098 Msa0746880:CDS 45.0%
GGCTTGTCTGTGGAAGATAT+TGG + chr5_1:70503111-70503130 None:intergenic 45.0%
!!! TGGTTTTAGTGGCTTGTCTG+TGG + chr5_1:70503121-70503140 None:intergenic 45.0%
CAAAATTCACACCACCAAGG+CGG - chr5_1:70503169-70503188 Msa0746880:CDS 45.0%
GTTGAAATCCATGGAGCTCA+TGG - chr5_1:70503436-70503455 Msa0746880:intron 45.0%
AAACCGACAACGGTTCTCAA+GGG + chr5_1:70503524-70503543 None:intergenic 45.0%
CTTCCAAAGCAAACCGACAA+CGG + chr5_1:70503534-70503553 None:intergenic 45.0%
! CCTTTGAAGGCCTTTCTCAT+TGG + chr5_1:70503772-70503791 None:intergenic 45.0%
CCAATGAGAAAGGCCTTCAA+AGG - chr5_1:70503769-70503788 Msa0746880:intron 45.0%
!! AAAGGCACTTTCATGGTTGC+AGG - chr5_1:70503787-70503806 Msa0746880:intron 45.0%
GGAGGTTACGATCGAAATGA+TGG - chr5_1:70503808-70503827 Msa0746880:intron 45.0%
TCAACGCCATAGCTGAAAAC+AGG - chr5_1:70503833-70503852 Msa0746880:CDS 45.0%
CAACGCCATAGCTGAAAACA+GGG - chr5_1:70503834-70503853 Msa0746880:CDS 45.0%
AGGGCAGACCTAGTTGTATA+TGG - chr5_1:70503853-70503872 Msa0746880:CDS 45.0%
TACGTTCCTGATCCAGTTCT+AGG - chr5_1:70503958-70503977 Msa0746880:CDS 45.0%
TAGTGAGGAGATTCCACACT+TGG + chr5_1:70504032-70504051 None:intergenic 45.0%
AGGTTGTGGAACATTGCCGT+AGG + chr5_1:70502259-70502278 None:intergenic 50.0%
! TCTCAGAGAGCCTCTAAAGG+TGG - chr5_1:70502297-70502316 Msa0746880:CDS 50.0%
CTTCTCATAGCCGAAGCTAC+CGG - chr5_1:70502321-70502340 Msa0746880:CDS 50.0%
TTGAGCAGTGTCAGAGACAC+CGG + chr5_1:70502343-70502362 None:intergenic 50.0%
TCAAGGCTATCCAAACACGC+CGG - chr5_1:70502359-70502378 Msa0746880:CDS 50.0%
ATCCAAACACGCCGGGTATA+TGG - chr5_1:70502367-70502386 Msa0746880:CDS 50.0%
! CTAAAGAGCACGTTGAGGCT+TGG - chr5_1:70502391-70502410 Msa0746880:CDS 50.0%
! GATATTGGTGCTTGCCCATC+CGG + chr5_1:70503096-70503115 None:intergenic 50.0%
CTTAGTGGGGTGCAAATTGC+AGG - chr5_1:70503403-70503422 Msa0746880:intron 50.0%
GACAGGACAGATGAGTATGG+TGG - chr5_1:70503496-70503515 Msa0746880:intron 50.0%
GATCCCTTGAGAACCGTTGT+CGG - chr5_1:70503518-70503537 Msa0746880:intron 50.0%
CAAACCGACAACGGTTCTCA+AGG + chr5_1:70503525-70503544 None:intergenic 50.0%
!! GAACCGTTGTCGGTTTGCTT+TGG - chr5_1:70503528-70503547 Msa0746880:intron 50.0%
TCTCATTGGCACAAGGCTGT+CGG + chr5_1:70503758-70503777 None:intergenic 50.0%
! CAGCCTTGTGCCAATGAGAA+AGG - chr5_1:70503759-70503778 Msa0746880:intron 50.0%
AGGCCTTTCTCATTGGCACA+AGG + chr5_1:70503765-70503784 None:intergenic 50.0%
!! GGCCTTCAAAGGCACTTTCA+TGG - chr5_1:70503780-70503799 Msa0746880:intron 50.0%
! GTCTGCCCTGTTTTCAGCTA+TGG + chr5_1:70503842-70503861 None:intergenic 50.0%
ACACTTGGATGCTACAGCAC+CGG + chr5_1:70504017-70504036 None:intergenic 50.0%
AGGTTGTGGAACATTGCCGT+AGG + chr5_1:70502259-70502278 None:intergenic 50.0%
! TCTCAGAGAGCCTCTAAAGG+TGG - chr5_1:70502297-70502316 Msa0746880:CDS 50.0%
CTTCTCATAGCCGAAGCTAC+CGG - chr5_1:70502321-70502340 Msa0746880:CDS 50.0%
TTGAGCAGTGTCAGAGACAC+CGG + chr5_1:70502343-70502362 None:intergenic 50.0%
TCAAGGCTATCCAAACACGC+CGG - chr5_1:70502359-70502378 Msa0746880:CDS 50.0%
ATCCAAACACGCCGGGTATA+TGG - chr5_1:70502367-70502386 Msa0746880:CDS 50.0%
! CTAAAGAGCACGTTGAGGCT+TGG - chr5_1:70502391-70502410 Msa0746880:CDS 50.0%
! GATATTGGTGCTTGCCCATC+CGG + chr5_1:70503096-70503115 None:intergenic 50.0%
CTTAGTGGGGTGCAAATTGC+AGG - chr5_1:70503403-70503422 Msa0746880:intron 50.0%
GACAGGACAGATGAGTATGG+TGG - chr5_1:70503496-70503515 Msa0746880:intron 50.0%
GATCCCTTGAGAACCGTTGT+CGG - chr5_1:70503518-70503537 Msa0746880:intron 50.0%
CAAACCGACAACGGTTCTCA+AGG + chr5_1:70503525-70503544 None:intergenic 50.0%
!! GAACCGTTGTCGGTTTGCTT+TGG - chr5_1:70503528-70503547 Msa0746880:intron 50.0%
TCTCATTGGCACAAGGCTGT+CGG + chr5_1:70503758-70503777 None:intergenic 50.0%
! CAGCCTTGTGCCAATGAGAA+AGG - chr5_1:70503759-70503778 Msa0746880:intron 50.0%
AGGCCTTTCTCATTGGCACA+AGG + chr5_1:70503765-70503784 None:intergenic 50.0%
!! GGCCTTCAAAGGCACTTTCA+TGG - chr5_1:70503780-70503799 Msa0746880:intron 50.0%
! GTCTGCCCTGTTTTCAGCTA+TGG + chr5_1:70503842-70503861 None:intergenic 50.0%
ACACTTGGATGCTACAGCAC+CGG + chr5_1:70504017-70504036 None:intergenic 50.0%
! AGTGGAAAGTGCAGGCGGTT+TGG + chr5_1:70501959-70501978 None:intergenic 55.0%
GTCAGAGACACCGGTAGCTT+CGG + chr5_1:70502334-70502353 None:intergenic 55.0%
GGTGTCTCTGACACTGCTCA+AGG - chr5_1:70502342-70502361 Msa0746880:CDS 55.0%
CAAGGCTATCCAAACACGCC+GGG - chr5_1:70502360-70502379 Msa0746880:CDS 55.0%
GTCCATATACCCGGCGTGTT+TGG + chr5_1:70502372-70502391 None:intergenic 55.0%
TCATCTGTCCTTAGCCGCCT+TGG + chr5_1:70503186-70503205 None:intergenic 55.0%
GTAGGTAGCCATGAGCTCCA+TGG + chr5_1:70503447-70503466 None:intergenic 55.0%
TCATTGGCACAAGGCTGTCG+GGG + chr5_1:70503756-70503775 None:intergenic 55.0%
CTCATTGGCACAAGGCTGTC+GGG + chr5_1:70503757-70503776 None:intergenic 55.0%
GGCACTTTCATGGTTGCAGG+AGG - chr5_1:70503790-70503809 Msa0746880:intron 55.0%
! GGTGCTGTAGCATCCAAGTG+TGG - chr5_1:70504016-70504035 Msa0746880:CDS 55.0%
! AGTGGAAAGTGCAGGCGGTT+TGG + chr5_1:70501959-70501978 None:intergenic 55.0%
GTCAGAGACACCGGTAGCTT+CGG + chr5_1:70502334-70502353 None:intergenic 55.0%
GGTGTCTCTGACACTGCTCA+AGG - chr5_1:70502342-70502361 Msa0746880:CDS 55.0%
CAAGGCTATCCAAACACGCC+GGG - chr5_1:70502360-70502379 Msa0746880:CDS 55.0%
GTCCATATACCCGGCGTGTT+TGG + chr5_1:70502372-70502391 None:intergenic 55.0%
TCATCTGTCCTTAGCCGCCT+TGG + chr5_1:70503186-70503205 None:intergenic 55.0%
GTAGGTAGCCATGAGCTCCA+TGG + chr5_1:70503447-70503466 None:intergenic 55.0%
TCATTGGCACAAGGCTGTCG+GGG + chr5_1:70503756-70503775 None:intergenic 55.0%
CTCATTGGCACAAGGCTGTC+GGG + chr5_1:70503757-70503776 None:intergenic 55.0%
GGCACTTTCATGGTTGCAGG+AGG - chr5_1:70503790-70503809 Msa0746880:intron 55.0%
! GGTGCTGTAGCATCCAAGTG+TGG - chr5_1:70504016-70504035 Msa0746880:CDS 55.0%
TCACACCACCAAGGCGGCTA+AGG - chr5_1:70503175-70503194 Msa0746880:intron 60.0%
TCTGTCCTTAGCCGCCTTGG+TGG + chr5_1:70503183-70503202 None:intergenic 60.0%
TCACACCACCAAGGCGGCTA+AGG - chr5_1:70503175-70503194 Msa0746880:intron 60.0%
TCTGTCCTTAGCCGCCTTGG+TGG + chr5_1:70503183-70503202 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 70501916 70504358 70501916 ID=Msa0746880;Name=Msa0746880
chr5_1 mRNA 70501916 70504358 70501916 ID=Msa0746880-mRNA-1;Parent=Msa0746880;Name=Msa0746880-mRNA-1;_AED=0.12;_eAED=0.12;_QI=119|0.66|0.75|1|1|1|4|350|353
chr5_1 exon 70501916 70502849 70501916 ID=Msa0746880-mRNA-1:exon:20731;Parent=Msa0746880-mRNA-1
chr5_1 exon 70503013 70503189 70503013 ID=Msa0746880-mRNA-1:exon:20730;Parent=Msa0746880-mRNA-1
chr5_1 exon 70503827 70504050 70503827 ID=Msa0746880-mRNA-1:exon:20729;Parent=Msa0746880-mRNA-1
chr5_1 exon 70504163 70504358 70504163 ID=Msa0746880-mRNA-1:exon:20728;Parent=Msa0746880-mRNA-1
chr5_1 five_prime_UTR 70504240 70504358 70504240 ID=Msa0746880-mRNA-1:five_prime_utr;Parent=Msa0746880-mRNA-1
chr5_1 CDS 70504163 70504239 70504163 ID=Msa0746880-mRNA-1:cds;Parent=Msa0746880-mRNA-1
chr5_1 CDS 70503827 70504050 70503827 ID=Msa0746880-mRNA-1:cds;Parent=Msa0746880-mRNA-1
chr5_1 CDS 70503013 70503189 70503013 ID=Msa0746880-mRNA-1:cds;Parent=Msa0746880-mRNA-1
chr5_1 CDS 70502266 70502849 70502266 ID=Msa0746880-mRNA-1:cds;Parent=Msa0746880-mRNA-1
chr5_1 three_prime_UTR 70501916 70502265 70501916 ID=Msa0746880-mRNA-1:three_prime_utr;Parent=Msa0746880-mRNA-1
Gene Sequence

>Msa0746880

ATGGCTGGTGTTGTTGAATCTGATCCCATTCCACTTCTTACTCCTTACAAGATGGGCAAATTCAATCTATCTCATAGAGTTGTTTTGGCACCACTCACAAGACAAAGATCCTACGGCAATGTTCCACAACCTCATGCTATCCTCTATTACTCTCAGAGAGCCTCTAAAGGTGGTCTTCTCATAGCCGAAGCTACCGGTGTCTCTGACACTGCTCAAGGCTATCCAAACACGCCGGGTATATGGACTAAAGAGCACGTTGAGGCTTGGAAACCTATTGTAGATGCTGTTCATGACAAAGGCGTTTATCAGCCGGATGGGCAAGCACCAATATCTTCCACAGACAAGCCACTAAAACCACAAATTCGAAGTAATGGTATTGATGTTGCAAAATTCACACCACCAAGGCGGCTAAGGACAGATGAAATTCCGAACATTGTCAATGACTTCAGACTCGCTGCAAGAAATGCTATTGAAGCTGGATTTGATGGGGTTGAAATCCATGGAGCTCATGGCTACCTACTTGAACAATTCATGAAAGATAAAGTGAATGACAGGACAGATGAGTATGGTGGATCCCTTGAGAACCGTTGTCGGTTTGCTTTGGAAGTTGTTGAAGCTGTTGCAAATGAGATAGGAACAGAAAGAGTTGGAATAAGATTATCACCTTTTGCAGAGTATGCAGAATGTGGAGACTCCAACCCTAAAGAATTGGGACTTTATATGGTTAATGCCCTCAATAAATATGGTATTCTTTATTGTCACATGGTGGAACCAAGAATGATAACTGTTGGTGAAAAAACTGAATGCCCCGACAGCCTTGTGCCAATGAGAAAGGCCTTCAAAGGCACTTTCATGGTTGCAGGAGGTTACGATCGAAATGATGGGATCAACGCCATAGCTGAAAACAGGGCAGACCTAGTTGTATATGGTCGTTTGTTCTTAGCTAATCCAGATTTGCCAAAGAGATTTGCACTTGATGCTCCTCTAAACAAGTATAACAGGGAGACATTTTACGTTCCTGATCCAGTTCTAGGTTATACTGACTACCCTTTTCTTGAATGA
Protein sequence

>Msa0746880

MAGVVESDPIPLLTPYKMGKFNLSHRVVLAPLTRQRSYGNVPQPHAILYYSQRASKGGLLIAEATGVSDTAQGYPNTPGIWTKEHVEAWKPIVDAVHDKGVYQPDGQAPISSTDKPLKPQIRSNGIDVAKFTPPRRLRTDEIPNIVNDFRLAARNAIEAGFDGVEIHGAHGYLLEQFMKDKVNDRTDEYGGSLENRCRFALEVVEAVANEIGTERVGIRLSPFAEYAECGDSNPKELGLYMVNALNKYGILYCHMVEPRMITVGEKTECPDSLVPMRKAFKGTFMVAGGYDRNDGINAIAENRADLVVYGRLFLANPDLPKRFALDAPLNKYNRETFYVPDPVLGYTDYPFLE*