AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0749530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0749530 MtrunA17_Chr5g0394891 93.225 369 9 1 1 353 1 369 0.0 702
Msa0749530 MtrunA17_Chr5g0394861 89.757 371 20 2 1 353 1 371 0.0 680
Msa0749530 MtrunA17_Chr5g0394841 83.827 371 42 2 1 353 1 371 0.0 642
Msa0749530 MtrunA17_Chr5g0395841 79.620 368 59 2 1 352 3 370 0.0 609
Msa0749530 MtrunA17_Chr5g0394751 81.644 365 45 2 5 353 1 359 0.0 605
Msa0749530 MtrunA17_Chr5g0394811 79.890 363 57 1 7 353 116 478 0.0 605
Msa0749530 MtrunA17_Chr5g0394811 89.157 83 9 0 18 100 1 83 1.22e-43 157
Msa0749530 MtrunA17_Chr5g0394771 80.165 363 50 2 7 353 35 391 0.0 594
Msa0749530 MtrunA17_Chr3g0144001 68.056 360 95 2 10 353 8 363 0.0 506
Msa0749530 MtrunA17_Chr4g0070561 51.213 371 150 5 12 352 19 388 1.34e-128 374
Msa0749530 MtrunA17_Chr5g0394791 69.110 191 49 1 4 184 3 193 8.22e-91 270
Msa0749530 MtrunA17_Chr5g0394801 66.154 195 39 1 151 345 18 185 9.82e-85 256
Msa0749530 MtrunA17_Chr3g0130471 69.091 55 14 1 178 232 1 52 4.95e-18 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0749530 AT1G76690.1 74.255 369 79 1 1 353 3 371 0.0 572
Msa0749530 AT1G76680.1 73.611 360 79 1 10 353 10 369 0.0 557
Msa0749530 AT1G76680.2 68.831 385 79 2 10 353 10 394 0.0 543
Msa0749530 AT1G09400.1 67.273 330 86 2 18 331 1 324 2.78e-165 464
Msa0749530 AT1G09400.2 67.778 270 65 2 78 331 2 265 8.24e-132 377
Msa0749530 AT1G17990.1 68.359 256 62 3 10 250 7 258 1.88e-126 364
Msa0749530 AT1G18020.1 68.359 256 62 3 10 250 7 258 1.88e-126 364
Msa0749530 AT2G06050.2 48.800 375 157 5 12 352 12 385 4.23e-123 360
Msa0749530 AT2G06050.1 48.800 375 157 5 12 352 12 385 4.23e-123 360
Msa0749530 AT2G06050.3 48.800 375 157 5 12 352 12 385 4.23e-123 360
Msa0749530 AT1G17990.2 65.234 256 62 4 10 250 7 250 8.93e-118 342

Find 126 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATCTCTTTGGCAAATC+TGG 0.201994 5_2:-3062999 None:intergenic
ATATAAAGTCCCAATTCTTT+AGG 0.204540 5_2:-3062750 None:intergenic
TAAAGAATTGGGACTTTATA+TGG 0.215484 5_2:+3062752 Msa0749530:CDS
TCACCAACAGTTATCATTCT+TGG 0.270456 5_2:-3062822 None:intergenic
TATAAAGTCCCAATTCTTTA+GGG 0.287263 5_2:-3062749 None:intergenic
CTCCTCTAAACAAGTATAAC+AGG 0.287689 5_2:+3063030 Msa0749530:CDS
ATAAGAGGATTTGATTATAT+TGG 0.291626 5_2:+3063429 Msa0749530:three_prime_UTR
ATTTCATTTCAGAGTTGTTT+TGG 0.300909 5_2:+3061316 Msa0749530:intron
ATCCAAACACGCCGGGTATA+TGG 0.309625 5_2:+3061471 Msa0749530:CDS
AAAGGCACTTTCATGGTTGC+AGG 0.311740 5_2:+3062891 Msa0749530:CDS
TGGAATCTCCTCACTAAATA+AGG 0.319627 5_2:+3063140 Msa0749530:three_prime_UTR
GCTTACTCTTGCTAATGCTT+TGG 0.322777 5_2:+3063251 Msa0749530:three_prime_UTR
GTTAATGCCCTCAATAAATA+TGG 0.323996 5_2:+3062774 Msa0749530:CDS
TCCCTGTTATACTTGTTTAG+AGG 0.330923 5_2:-3063032 None:intergenic
TACGTTCCTGATCCAGTTCT+AGG 0.338102 5_2:+3063062 Msa0749530:CDS
CTCATTGGCACAAGGCTGTC+GGG 0.340556 5_2:-3062858 None:intergenic
GTCCATATACCCGGCGTGTT+TGG 0.348909 5_2:-3061473 None:intergenic
TATGAGAAGACCACCTTTAG+AGG 0.360557 5_2:-3061411 None:intergenic
AGACTCCAACCCTAAAGAAT+TGG 0.376017 5_2:+3062740 Msa0749530:CDS
GTGCAAATTGCAGGATTTGA+TGG 0.377428 5_2:+3062516 Msa0749530:intron
TTGAATTTGCCCATCTTGTA+AGG 0.380236 5_2:-3061181 None:intergenic
CCTTTGAAGGCCTTTCTCAT+TGG 0.383217 5_2:-3062873 None:intergenic
GGCCTTCAAAGGCACTTTCA+TGG 0.385984 5_2:+3062884 Msa0749530:CDS
TCATGAACAGCATCTACAAT+AGG 0.392438 5_2:-3061521 None:intergenic
TCAACGCCATAGCTGAAAAC+AGG 0.396930 5_2:+3062937 Msa0749530:CDS
GCATCAAGTGCAAATCTCTT+TGG 0.407422 5_2:-3063008 None:intergenic
GATATTGGTGCTTGCCCATC+CGG 0.412505 5_2:-3062197 None:intergenic
CGGTTACTTCATTCAAGAAA+AGG 0.415590 5_2:-3063098 None:intergenic
ATACCATTACTTCGAATTTG+TGG 0.416930 5_2:-3062242 None:intergenic
GAACCGTTGTCGGTTTGCTT+TGG 0.420051 5_2:+3062632 Msa0749530:CDS
CTGAAGTCATTGACAATGTT+CGG 0.421977 5_2:-3062314 None:intergenic
CATTTACAAAATGTGTGAAC+TGG 0.425857 5_2:-3063276 None:intergenic
TGCAAATTGCAGGATTTGAT+GGG 0.429144 5_2:+3062517 Msa0749530:intron
AAAGAATACCATATTTATTG+AGG 0.434046 5_2:-3062782 None:intergenic
TCATCTGTCCTTAGCCGCCT+TGG 0.434930 5_2:-3062287 None:intergenic
GCAAATTCAATCTATCTCAT+AGG 0.435780 5_2:+3061194 Msa0749530:CDS
AACCATGAAAGTGCCTTTGA+AGG 0.438354 5_2:-3062886 None:intergenic
CTCAACTTCAGTACAGGAAA+TGG 0.440662 5_2:+3061120 Msa0749530:exon
GTCAGAGACACCGGTAGCTT+CGG 0.447363 5_2:-3061435 None:intergenic
AGTGGAAAGTGCAGGCGGTT+TGG 0.449520 5_2:-3061060 None:intergenic
GAGATAGGAACAGAAAGAGT+TGG 0.455231 5_2:+3062678 Msa0749530:CDS
TTCAACCTCAACTTCAGTAC+AGG 0.468067 5_2:+3061114 Msa0749530:five_prime_UTR
TCTCATTGGCACAAGGCTGT+CGG 0.469927 5_2:-3062859 None:intergenic
GACTCCAACCCTAAAGAATT+GGG 0.474283 5_2:+3062741 Msa0749530:CDS
GGAGGTTACGATCGAAATGA+TGG 0.474346 5_2:+3062912 Msa0749530:CDS
AGGCTCTCTGAGAGTAATAG+AGG 0.476512 5_2:-3061391 None:intergenic
AGGGCAGACCTAGTTGTATA+TGG 0.479108 5_2:+3062957 Msa0749530:CDS
TAGTCAGTATAACCTAGAAC+TGG 0.480015 5_2:-3063074 None:intergenic
ACTTCTTACTCCTTACAAGA+TGG 0.486533 5_2:+3061171 Msa0749530:CDS
TATTTCAGTGACAAACTGAA+TGG 0.489114 5_2:-3063190 None:intergenic
AAGAATACCATATTTATTGA+GGG 0.490058 5_2:-3062781 None:intergenic
CTAAAGAGCACGTTGAGGCT+TGG 0.492352 5_2:+3061495 Msa0749530:CDS
GGTTACTTCATTCAAGAAAA+GGG 0.499808 5_2:-3063097 None:intergenic
CATTCTGCATACTCTGCAAA+AGG 0.500218 5_2:-3062714 None:intergenic
AAGTCCCAATTCTTTAGGGT+TGG 0.500435 5_2:-3062745 None:intergenic
GAAGCTGTTGCAAATGAGAT+AGG 0.501045 5_2:+3062663 Msa0749530:CDS
TAGAGGATAGCATGAGGTTG+TGG 0.502110 5_2:-3061374 None:intergenic
CAGCCTTGTGCCAATGAGAA+AGG 0.506956 5_2:+3062863 Msa0749530:CDS
TAAGGAGTAAGAAGTGGAAT+GGG 0.514396 5_2:-3061163 None:intergenic
TGAAAGATAAAGTGAATGAC+AGG 0.515619 5_2:+3062583 Msa0749530:CDS
CATTTCCTGTACTGAAGTTG+AGG 0.516207 5_2:-3061119 None:intergenic
GTATAACCTAGAACTGGATC+AGG 0.517171 5_2:-3063068 None:intergenic
GCAAGAAATGCTATTGAAGC+TGG 0.517901 5_2:+3062344 Msa0749530:CDS
GGCTTGTCTGTGGAAGATAT+TGG 0.523697 5_2:-3062212 None:intergenic
AAACCACAAATTCGAAGTAA+TGG 0.528619 5_2:+3062239 Msa0749530:CDS
GTAAGGAGTAAGAAGTGGAA+TGG 0.528759 5_2:-3061164 None:intergenic
GATCCCTTGAGAACCGTTGT+CGG 0.529555 5_2:+3062622 Msa0749530:CDS
TTTGATGGGGTTGAAATCCA+TGG 0.529668 5_2:+3062531 Msa0749530:CDS
CTTTCATGAATTGTTCAAGT+AGG 0.530510 5_2:-3062566 None:intergenic
GTTGAAATCCATGGAGCTCA+TGG 0.532007 5_2:+3062540 Msa0749530:CDS
CAAACCGACAACGGTTCTCA+AGG 0.533263 5_2:-3062626 None:intergenic
TAGTGAGGAGATTCCACACT+TGG 0.535155 5_2:-3063133 None:intergenic
TCTGTCCTTAGCCGCCTTGG+TGG 0.535739 5_2:-3062284 None:intergenic
TTGAGCAGTGTCAGAGACAC+CGG 0.539225 5_2:-3061444 None:intergenic
CTTCTTACTCCTTACAAGAT+GGG 0.539764 5_2:+3061172 Msa0749530:CDS
TCACACCACCAAGGCGGCTA+AGG 0.540861 5_2:+3062279 Msa0749530:CDS
ATTCTCAACAGTTTATCAGC+CGG 0.545602 5_2:+3062178 Msa0749530:intron
CAACAGTTTATCAGCCGGAT+GGG 0.548494 5_2:+3062183 Msa0749530:intron
AATGACAGGACAGATGAGTA+TGG 0.553924 5_2:+3062597 Msa0749530:CDS
TCAACAGTTTATCAGCCGGA+TGG 0.554883 5_2:+3062182 Msa0749530:intron
TACTCTCAGAGAGCCTCTAA+AGG 0.554945 5_2:+3061398 Msa0749530:CDS
ACCTAGACGGATTATTTGAA+AGG 0.555324 5_2:+3061026 Msa0749530:five_prime_UTR
AGGCCTTTCTCATTGGCACA+AGG 0.555706 5_2:-3062866 None:intergenic
CTTCTCATAGCCGAAGCTAC+CGG 0.560076 5_2:+3061425 Msa0749530:CDS
CAAGGCTATCCAAACACGCC+GGG 0.568991 5_2:+3061464 Msa0749530:CDS
AAACTAAAAGTGGAAAGTGC+AGG 0.574102 5_2:-3061068 None:intergenic
CCAATGAGAAAGGCCTTCAA+AGG 0.575485 5_2:+3062873 Msa0749530:CDS
ACACTTGGATGCTACAGCAC+CGG 0.578230 5_2:-3063118 None:intergenic
TGGTATTCTTTATTGTCACA+TGG 0.580029 5_2:+3062794 Msa0749530:CDS
TCATTGGCACAAGGCTGTCG+GGG 0.584370 5_2:-3062857 None:intergenic
ACCTTTCAAATAATCCGTCT+AGG 0.587568 5_2:-3061027 None:intergenic
GGCACTTTCATGGTTGCAGG+AGG 0.593746 5_2:+3062894 Msa0749530:CDS
GTAGGTAGCCATGAGCTCCA+TGG 0.595976 5_2:-3062548 None:intergenic
TTTGCAGAGTATGCAGAATG+TGG 0.596323 5_2:+3062717 Msa0749530:CDS
ATTTACAAAATGTGTGAACT+GGG 0.598647 5_2:-3063275 None:intergenic
CTCACAAGACAAAGATCCTA+CGG 0.598712 5_2:+3061344 Msa0749530:CDS
ACTTCAGTACAGGAAATGGC+TGG 0.601525 5_2:+3061124 Msa0749530:exon
ATCTTGTAAGGAGTAAGAAG+TGG 0.605352 5_2:-3061169 None:intergenic
GCAAATTGCAGGATTTGATG+GGG 0.608055 5_2:+3062518 Msa0749530:intron
ATGGCATAAAGCAATTTGCA+AGG 0.617217 5_2:-3063171 None:intergenic
CTTCCAAAGCAAACCGACAA+CGG 0.620487 5_2:-3062635 None:intergenic
GGTGTCTCTGACACTGCTCA+AGG 0.621150 5_2:+3061446 Msa0749530:CDS
TGGCATAAAGCAATTTGCAA+GGG 0.621159 5_2:-3063170 None:intergenic
ACATATGGAACGAACCTAGA+CGG 0.621801 5_2:+3061013 None:intergenic
ACAAACGACCATATACAACT+AGG 0.621826 5_2:-3062965 None:intergenic
AAACCGACAACGGTTCTCAA+GGG 0.626011 5_2:-3062625 None:intergenic
TGCTCTTTAGTCCATATACC+CGG 0.626306 5_2:-3061482 None:intergenic
CAACGCCATAGCTGAAAACA+GGG 0.626950 5_2:+3062938 Msa0749530:CDS
GTAGATGCTGTTCATGACAA+AGG 0.628826 5_2:+3061527 Msa0749530:CDS
GAGGTTACGATCGAAATGAT+GGG 0.630066 5_2:+3062913 Msa0749530:CDS
GATAATGACCTTATTTAGTG+AGG 0.630521 5_2:-3063148 None:intergenic
TATTCTTTATTGTCACATGG+TGG 0.639708 5_2:+3062797 Msa0749530:CDS
TAGGATCTTTGTCTTGTGAG+TGG 0.640382 5_2:-3061341 None:intergenic
TCCTCTAAACAAGTATAACA+GGG 0.645269 5_2:+3063031 Msa0749530:CDS
GACAGGACAGATGAGTATGG+TGG 0.649651 5_2:+3062600 Msa0749530:CDS
TCAAGGCTATCCAAACACGC+CGG 0.650428 5_2:+3061463 Msa0749530:CDS
AGGTTGTGGAACATTGCCGT+AGG 0.656729 5_2:-3061360 None:intergenic
TCTCAGAGAGCCTCTAAAGG+TGG 0.663690 5_2:+3061401 Msa0749530:CDS
GGTGCTGTAGCATCCAAGTG+TGG 0.676085 5_2:+3063120 Msa0749530:three_prime_UTR
CTAAAAGTGGAAAGTGCAGG+CGG 0.679672 5_2:-3061065 None:intergenic
GAGTAATAGAGGATAGCATG+AGG 0.689366 5_2:-3061380 None:intergenic
GAACCAAGAATGATAACTGT+TGG 0.691135 5_2:+3062819 Msa0749530:CDS
TTGCAAAATTCACACCACCA+AGG 0.719184 5_2:+3062270 Msa0749530:CDS
ATGGACTAAAGAGCACGTTG+AGG 0.722206 5_2:+3061490 Msa0749530:CDS
CAAAATTCACACCACCAAGG+CGG 0.741166 5_2:+3062273 Msa0749530:CDS
GATGCTGTTCATGACAAAGG+CGG 0.776205 5_2:+3061530 Msa0749530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTGTTTACAATAAAA+GGG + chr5_2:3062023-3062042 Msa0749530:intron 10.0%
!!! TATCTTAATTTTATAAAATC+AGG - chr5_2:3063395-3063414 None:intergenic 10.0%
!! TAATATTGTTTACAATAAAA+GGG + chr5_2:3062023-3062042 Msa0749530:intron 10.0%
!!! TATCTTAATTTTATAAAATC+AGG - chr5_2:3063395-3063414 None:intergenic 10.0%
!! CTAATATTGTTTACAATAAA+AGG + chr5_2:3062022-3062041 Msa0749530:intron 15.0%
!! CTAATATTGTTTACAATAAA+AGG + chr5_2:3062022-3062041 Msa0749530:intron 15.0%
!!! TTTTATGTTGAAACTAAAAG+TGG - chr5_2:3061081-3061100 None:intergenic 20.0%
!! AATATGGAATGATAAATGAA+TGG - chr5_2:3061237-3061256 None:intergenic 20.0%
!! AACATGACATAAAACATAAA+CGG + chr5_2:3061753-3061772 Msa0749530:intron 20.0%
!! AATATGATATGATATGTTCT+AGG + chr5_2:3061876-3061895 Msa0749530:intron 20.0%
!! TTGTTATCGAGTATTATTAA+GGG + chr5_2:3062067-3062086 Msa0749530:intron 20.0%
!! AATTATGTAACATACTTAGT+GGG + chr5_2:3062493-3062512 Msa0749530:intron 20.0%
!! AAGAATACCATATTTATTGA+GGG - chr5_2:3062784-3062803 None:intergenic 20.0%
!! AAAGAATACCATATTTATTG+AGG - chr5_2:3062785-3062804 None:intergenic 20.0%
!! ATAAGAGGATTTGATTATAT+TGG + chr5_2:3063429-3063448 Msa0749530:three_prime_UTR 20.0%
!!! TTTTATGTTGAAACTAAAAG+TGG - chr5_2:3061081-3061100 None:intergenic 20.0%
!! AATATGGAATGATAAATGAA+TGG - chr5_2:3061237-3061256 None:intergenic 20.0%
!! AACATGACATAAAACATAAA+CGG + chr5_2:3061753-3061772 Msa0749530:intron 20.0%
!! AATATGATATGATATGTTCT+AGG + chr5_2:3061876-3061895 Msa0749530:intron 20.0%
!! TTGTTATCGAGTATTATTAA+GGG + chr5_2:3062067-3062086 Msa0749530:intron 20.0%
!! AATTATGTAACATACTTAGT+GGG + chr5_2:3062493-3062512 Msa0749530:intron 20.0%
!! AAGAATACCATATTTATTGA+GGG - chr5_2:3062784-3062803 None:intergenic 20.0%
!! AAAGAATACCATATTTATTG+AGG - chr5_2:3062785-3062804 None:intergenic 20.0%
!! ATAAGAGGATTTGATTATAT+TGG + chr5_2:3063429-3063448 Msa0749530:three_prime_UTR 20.0%
! TGAGCAATTGAAATTGAATA+TGG - chr5_2:3061253-3061272 None:intergenic 25.0%
!! ATTTCATTTCAGAGTTGTTT+TGG + chr5_2:3061316-3061335 Msa0749530:intron 25.0%
! ACATGACATAAAACATAAAC+GGG + chr5_2:3061754-3061773 Msa0749530:intron 25.0%
!!! TACATTTTGACTAAAGACAT+AGG - chr5_2:3061818-3061837 None:intergenic 25.0%
!! CAAAAGTATATTTGTACAAC+AGG - chr5_2:3061983-3062002 None:intergenic 25.0%
!! CTGTTGTACAAATATACTTT+TGG + chr5_2:3061981-3062000 Msa0749530:intron 25.0%
!! TTACAATAAAAGGGTATGAT+TGG + chr5_2:3062032-3062051 Msa0749530:intron 25.0%
! GTTGTTATCGAGTATTATTA+AGG + chr5_2:3062066-3062085 Msa0749530:intron 25.0%
! TGTTATCGAGTATTATTAAG+GGG + chr5_2:3062068-3062087 Msa0749530:intron 25.0%
! ATCACACATAAATGTTCTAA+TGG + chr5_2:3062115-3062134 Msa0749530:intron 25.0%
! ATAAACTGTTGAGAATAACA+TGG - chr5_2:3062174-3062193 None:intergenic 25.0%
!!! GAGATTTTTGTTACTTTAGA+TGG + chr5_2:3062454-3062473 Msa0749530:intron 25.0%
! CACTAAGTATGTTACATAAT+TGG - chr5_2:3062494-3062513 None:intergenic 25.0%
! CAATTATGTAACATACTTAG+TGG + chr5_2:3062492-3062511 Msa0749530:intron 25.0%
! ATTATGTAACATACTTAGTG+GGG + chr5_2:3062494-3062513 Msa0749530:intron 25.0%
! TATAAAGTCCCAATTCTTTA+GGG - chr5_2:3062752-3062771 None:intergenic 25.0%
! ATATAAAGTCCCAATTCTTT+AGG - chr5_2:3062753-3062772 None:intergenic 25.0%
! TAAAGAATTGGGACTTTATA+TGG + chr5_2:3062752-3062771 Msa0749530:CDS 25.0%
! ATTTACAAAATGTGTGAACT+GGG - chr5_2:3063278-3063297 None:intergenic 25.0%
! TGAGCAATTGAAATTGAATA+TGG - chr5_2:3061253-3061272 None:intergenic 25.0%
!! ATTTCATTTCAGAGTTGTTT+TGG + chr5_2:3061316-3061335 Msa0749530:intron 25.0%
! ACATGACATAAAACATAAAC+GGG + chr5_2:3061754-3061773 Msa0749530:intron 25.0%
!!! TACATTTTGACTAAAGACAT+AGG - chr5_2:3061818-3061837 None:intergenic 25.0%
!! CAAAAGTATATTTGTACAAC+AGG - chr5_2:3061983-3062002 None:intergenic 25.0%
!! CTGTTGTACAAATATACTTT+TGG + chr5_2:3061981-3062000 Msa0749530:intron 25.0%
!! TTACAATAAAAGGGTATGAT+TGG + chr5_2:3062032-3062051 Msa0749530:intron 25.0%
! GTTGTTATCGAGTATTATTA+AGG + chr5_2:3062066-3062085 Msa0749530:intron 25.0%
! TGTTATCGAGTATTATTAAG+GGG + chr5_2:3062068-3062087 Msa0749530:intron 25.0%
! ATCACACATAAATGTTCTAA+TGG + chr5_2:3062115-3062134 Msa0749530:intron 25.0%
! ATAAACTGTTGAGAATAACA+TGG - chr5_2:3062174-3062193 None:intergenic 25.0%
!!! GAGATTTTTGTTACTTTAGA+TGG + chr5_2:3062454-3062473 Msa0749530:intron 25.0%
! CACTAAGTATGTTACATAAT+TGG - chr5_2:3062494-3062513 None:intergenic 25.0%
! CAATTATGTAACATACTTAG+TGG + chr5_2:3062492-3062511 Msa0749530:intron 25.0%
! ATTATGTAACATACTTAGTG+GGG + chr5_2:3062494-3062513 Msa0749530:intron 25.0%
! TATAAAGTCCCAATTCTTTA+GGG - chr5_2:3062752-3062771 None:intergenic 25.0%
! ATATAAAGTCCCAATTCTTT+AGG - chr5_2:3062753-3062772 None:intergenic 25.0%
! TAAAGAATTGGGACTTTATA+TGG + chr5_2:3062752-3062771 Msa0749530:CDS 25.0%
! ATTTACAAAATGTGTGAACT+GGG - chr5_2:3063278-3063297 None:intergenic 25.0%
GCAAATTCAATCTATCTCAT+AGG + chr5_2:3061194-3061213 Msa0749530:CDS 30.0%
GAGTAAATAACACAAACACA+TGG - chr5_2:3061296-3061315 None:intergenic 30.0%
! GTGTGTTTTTCTGTCAAATT+TGG + chr5_2:3061552-3061571 Msa0749530:intron 30.0%
!! TAGGAGTTATTCGTTTTTCT+TGG + chr5_2:3061708-3061727 Msa0749530:intron 30.0%
CATGACATAAAACATAAACG+GGG + chr5_2:3061755-3061774 Msa0749530:intron 30.0%
!! GGCATTTTAATCAGAGTAAT+AGG - chr5_2:3061797-3061816 None:intergenic 30.0%
CTTTAGTCAAAATGTAACTG+CGG + chr5_2:3061822-3061841 Msa0749530:intron 30.0%
GTTATCGAGTATTATTAAGG+GGG + chr5_2:3062069-3062088 Msa0749530:intron 30.0%
AAACCACAAATTCGAAGTAA+TGG + chr5_2:3062239-3062258 Msa0749530:CDS 30.0%
ATACCATTACTTCGAATTTG+TGG - chr5_2:3062245-3062264 None:intergenic 30.0%
CTTTCATGAATTGTTCAAGT+AGG - chr5_2:3062569-3062588 None:intergenic 30.0%
TGAAAGATAAAGTGAATGAC+AGG + chr5_2:3062583-3062602 Msa0749530:CDS 30.0%
GTTAATGCCCTCAATAAATA+TGG + chr5_2:3062774-3062793 Msa0749530:CDS 30.0%
TGGTATTCTTTATTGTCACA+TGG + chr5_2:3062794-3062813 Msa0749530:CDS 30.0%
TATTCTTTATTGTCACATGG+TGG + chr5_2:3062797-3062816 Msa0749530:CDS 30.0%
TCCTCTAAACAAGTATAACA+GGG + chr5_2:3063031-3063050 Msa0749530:CDS 30.0%
GGTTACTTCATTCAAGAAAA+GGG - chr5_2:3063100-3063119 None:intergenic 30.0%
! CTTTTCTTGAATGAAGTAAC+CGG + chr5_2:3063099-3063118 Msa0749530:exon 30.0%
! GATAATGACCTTATTTAGTG+AGG - chr5_2:3063151-3063170 None:intergenic 30.0%
TATTTCAGTGACAAACTGAA+TGG - chr5_2:3063193-3063212 None:intergenic 30.0%
CATTTACAAAATGTGTGAAC+TGG - chr5_2:3063279-3063298 None:intergenic 30.0%
! CAGTTCACACATTTTGTAAA+TGG + chr5_2:3063277-3063296 Msa0749530:three_prime_UTR 30.0%
! ACACATTTTGTAAATGGTCA+GGG + chr5_2:3063283-3063302 Msa0749530:three_prime_UTR 30.0%
! TTTTGTCTAACACTTCTTGT+TGG - chr5_2:3063364-3063383 None:intergenic 30.0%
! ATGAATTTTGCGCTAATAAG+AGG + chr5_2:3063414-3063433 Msa0749530:three_prime_UTR 30.0%
GCAAATTCAATCTATCTCAT+AGG + chr5_2:3061194-3061213 Msa0749530:CDS 30.0%
GAGTAAATAACACAAACACA+TGG - chr5_2:3061296-3061315 None:intergenic 30.0%
! GTGTGTTTTTCTGTCAAATT+TGG + chr5_2:3061552-3061571 Msa0749530:intron 30.0%
!! TAGGAGTTATTCGTTTTTCT+TGG + chr5_2:3061708-3061727 Msa0749530:intron 30.0%
CATGACATAAAACATAAACG+GGG + chr5_2:3061755-3061774 Msa0749530:intron 30.0%
!! GGCATTTTAATCAGAGTAAT+AGG - chr5_2:3061797-3061816 None:intergenic 30.0%
CTTTAGTCAAAATGTAACTG+CGG + chr5_2:3061822-3061841 Msa0749530:intron 30.0%
GTTATCGAGTATTATTAAGG+GGG + chr5_2:3062069-3062088 Msa0749530:intron 30.0%
AAACCACAAATTCGAAGTAA+TGG + chr5_2:3062239-3062258 Msa0749530:CDS 30.0%
ATACCATTACTTCGAATTTG+TGG - chr5_2:3062245-3062264 None:intergenic 30.0%
CTTTCATGAATTGTTCAAGT+AGG - chr5_2:3062569-3062588 None:intergenic 30.0%
TGAAAGATAAAGTGAATGAC+AGG + chr5_2:3062583-3062602 Msa0749530:CDS 30.0%
GTTAATGCCCTCAATAAATA+TGG + chr5_2:3062774-3062793 Msa0749530:CDS 30.0%
TGGTATTCTTTATTGTCACA+TGG + chr5_2:3062794-3062813 Msa0749530:CDS 30.0%
TATTCTTTATTGTCACATGG+TGG + chr5_2:3062797-3062816 Msa0749530:CDS 30.0%
TCCTCTAAACAAGTATAACA+GGG + chr5_2:3063031-3063050 Msa0749530:CDS 30.0%
GGTTACTTCATTCAAGAAAA+GGG - chr5_2:3063100-3063119 None:intergenic 30.0%
! CTTTTCTTGAATGAAGTAAC+CGG + chr5_2:3063099-3063118 Msa0749530:exon 30.0%
! GATAATGACCTTATTTAGTG+AGG - chr5_2:3063151-3063170 None:intergenic 30.0%
TATTTCAGTGACAAACTGAA+TGG - chr5_2:3063193-3063212 None:intergenic 30.0%
CATTTACAAAATGTGTGAAC+TGG - chr5_2:3063279-3063298 None:intergenic 30.0%
! CAGTTCACACATTTTGTAAA+TGG + chr5_2:3063277-3063296 Msa0749530:three_prime_UTR 30.0%
! ACACATTTTGTAAATGGTCA+GGG + chr5_2:3063283-3063302 Msa0749530:three_prime_UTR 30.0%
! TTTTGTCTAACACTTCTTGT+TGG - chr5_2:3063364-3063383 None:intergenic 30.0%
! ATGAATTTTGCGCTAATAAG+AGG + chr5_2:3063414-3063433 Msa0749530:three_prime_UTR 30.0%
!! ACCTAGACGGATTATTTGAA+AGG + chr5_2:3061026-3061045 Msa0749530:five_prime_UTR 35.0%
ACCTTTCAAATAATCCGTCT+AGG - chr5_2:3061030-3061049 None:intergenic 35.0%
! AAACTAAAAGTGGAAAGTGC+AGG - chr5_2:3061071-3061090 None:intergenic 35.0%
TAAGGAGTAAGAAGTGGAAT+GGG - chr5_2:3061166-3061185 None:intergenic 35.0%
ATCTTGTAAGGAGTAAGAAG+TGG - chr5_2:3061172-3061191 None:intergenic 35.0%
ACTTCTTACTCCTTACAAGA+TGG + chr5_2:3061171-3061190 Msa0749530:CDS 35.0%
CTTCTTACTCCTTACAAGAT+GGG + chr5_2:3061172-3061191 Msa0749530:CDS 35.0%
TTGAATTTGCCCATCTTGTA+AGG - chr5_2:3061184-3061203 None:intergenic 35.0%
TCATGAACAGCATCTACAAT+AGG - chr5_2:3061524-3061543 None:intergenic 35.0%
TTCTGTCAAATTTGGCATGT+TGG + chr5_2:3061560-3061579 Msa0749530:intron 35.0%
ACCTCAAATCAATACTTGTG+TGG - chr5_2:3061659-3061678 None:intergenic 35.0%
!! ATTGATTTGAGGTTTCCTTG+TGG + chr5_2:3061666-3061685 Msa0749530:intron 35.0%
ACTGAGTGAATTATGTGACT+AGG + chr5_2:3061689-3061708 Msa0749530:intron 35.0%
AATGTAACTGCGGAAAGAAT+TGG + chr5_2:3061832-3061851 Msa0749530:intron 35.0%
!! ATGATATGTTCTAGGACAGT+AGG + chr5_2:3061884-3061903 Msa0749530:intron 35.0%
! CATTCAGTTTTCCTCACTTA+AGG - chr5_2:3061922-3061941 None:intergenic 35.0%
ATTCTCAACAGTTTATCAGC+CGG + chr5_2:3062178-3062197 Msa0749530:intron 35.0%
!!! CTTCGAATTTGTGGTTTTAG+TGG - chr5_2:3062236-3062255 None:intergenic 35.0%
CTGAAGTCATTGACAATGTT+CGG - chr5_2:3062317-3062336 None:intergenic 35.0%
!! TTGTTACTTTAGATGGCACT+AGG + chr5_2:3062461-3062480 Msa0749530:intron 35.0%
TGCAAATTGCAGGATTTGAT+GGG + chr5_2:3062517-3062536 Msa0749530:intron 35.0%
GAACCAAGAATGATAACTGT+TGG + chr5_2:3062819-3062838 Msa0749530:CDS 35.0%
TCACCAACAGTTATCATTCT+TGG - chr5_2:3062825-3062844 None:intergenic 35.0%
ACAAACGACCATATACAACT+AGG - chr5_2:3062968-3062987 None:intergenic 35.0%
CTCCTCTAAACAAGTATAAC+AGG + chr5_2:3063030-3063049 Msa0749530:CDS 35.0%
TCCCTGTTATACTTGTTTAG+AGG - chr5_2:3063035-3063054 None:intergenic 35.0%
TAGTCAGTATAACCTAGAAC+TGG - chr5_2:3063077-3063096 None:intergenic 35.0%
CGGTTACTTCATTCAAGAAA+AGG - chr5_2:3063101-3063120 None:intergenic 35.0%
TGGAATCTCCTCACTAAATA+AGG + chr5_2:3063140-3063159 Msa0749530:three_prime_UTR 35.0%
TGGCATAAAGCAATTTGCAA+GGG - chr5_2:3063173-3063192 None:intergenic 35.0%
ATGGCATAAAGCAATTTGCA+AGG - chr5_2:3063174-3063193 None:intergenic 35.0%
! CACACATTTTGTAAATGGTC+AGG + chr5_2:3063282-3063301 Msa0749530:three_prime_UTR 35.0%
!! ACCTAGACGGATTATTTGAA+AGG + chr5_2:3061026-3061045 Msa0749530:five_prime_UTR 35.0%
ACCTTTCAAATAATCCGTCT+AGG - chr5_2:3061030-3061049 None:intergenic 35.0%
! AAACTAAAAGTGGAAAGTGC+AGG - chr5_2:3061071-3061090 None:intergenic 35.0%
TAAGGAGTAAGAAGTGGAAT+GGG - chr5_2:3061166-3061185 None:intergenic 35.0%
ATCTTGTAAGGAGTAAGAAG+TGG - chr5_2:3061172-3061191 None:intergenic 35.0%
ACTTCTTACTCCTTACAAGA+TGG + chr5_2:3061171-3061190 Msa0749530:CDS 35.0%
CTTCTTACTCCTTACAAGAT+GGG + chr5_2:3061172-3061191 Msa0749530:CDS 35.0%
TTGAATTTGCCCATCTTGTA+AGG - chr5_2:3061184-3061203 None:intergenic 35.0%
TCATGAACAGCATCTACAAT+AGG - chr5_2:3061524-3061543 None:intergenic 35.0%
TTCTGTCAAATTTGGCATGT+TGG + chr5_2:3061560-3061579 Msa0749530:intron 35.0%
ACCTCAAATCAATACTTGTG+TGG - chr5_2:3061659-3061678 None:intergenic 35.0%
!! ATTGATTTGAGGTTTCCTTG+TGG + chr5_2:3061666-3061685 Msa0749530:intron 35.0%
ACTGAGTGAATTATGTGACT+AGG + chr5_2:3061689-3061708 Msa0749530:intron 35.0%
AATGTAACTGCGGAAAGAAT+TGG + chr5_2:3061832-3061851 Msa0749530:intron 35.0%
!! ATGATATGTTCTAGGACAGT+AGG + chr5_2:3061884-3061903 Msa0749530:intron 35.0%
! CATTCAGTTTTCCTCACTTA+AGG - chr5_2:3061922-3061941 None:intergenic 35.0%
ATTCTCAACAGTTTATCAGC+CGG + chr5_2:3062178-3062197 Msa0749530:intron 35.0%
!!! CTTCGAATTTGTGGTTTTAG+TGG - chr5_2:3062236-3062255 None:intergenic 35.0%
CTGAAGTCATTGACAATGTT+CGG - chr5_2:3062317-3062336 None:intergenic 35.0%
!! TTGTTACTTTAGATGGCACT+AGG + chr5_2:3062461-3062480 Msa0749530:intron 35.0%
TGCAAATTGCAGGATTTGAT+GGG + chr5_2:3062517-3062536 Msa0749530:intron 35.0%
GAACCAAGAATGATAACTGT+TGG + chr5_2:3062819-3062838 Msa0749530:CDS 35.0%
TCACCAACAGTTATCATTCT+TGG - chr5_2:3062825-3062844 None:intergenic 35.0%
ACAAACGACCATATACAACT+AGG - chr5_2:3062968-3062987 None:intergenic 35.0%
CTCCTCTAAACAAGTATAAC+AGG + chr5_2:3063030-3063049 Msa0749530:CDS 35.0%
TCCCTGTTATACTTGTTTAG+AGG - chr5_2:3063035-3063054 None:intergenic 35.0%
TAGTCAGTATAACCTAGAAC+TGG - chr5_2:3063077-3063096 None:intergenic 35.0%
CGGTTACTTCATTCAAGAAA+AGG - chr5_2:3063101-3063120 None:intergenic 35.0%
TGGAATCTCCTCACTAAATA+AGG + chr5_2:3063140-3063159 Msa0749530:three_prime_UTR 35.0%
TGGCATAAAGCAATTTGCAA+GGG - chr5_2:3063173-3063192 None:intergenic 35.0%
ATGGCATAAAGCAATTTGCA+AGG - chr5_2:3063174-3063193 None:intergenic 35.0%
! CACACATTTTGTAAATGGTC+AGG + chr5_2:3063282-3063301 Msa0749530:three_prime_UTR 35.0%
TTCAACCTCAACTTCAGTAC+AGG + chr5_2:3061114-3061133 Msa0749530:five_prime_UTR 40.0%
CATTTCCTGTACTGAAGTTG+AGG - chr5_2:3061122-3061141 None:intergenic 40.0%
CTCAACTTCAGTACAGGAAA+TGG + chr5_2:3061120-3061139 Msa0749530:exon 40.0%
GTAAGGAGTAAGAAGTGGAA+TGG - chr5_2:3061167-3061186 None:intergenic 40.0%
TAGGATCTTTGTCTTGTGAG+TGG - chr5_2:3061344-3061363 None:intergenic 40.0%
CTCACAAGACAAAGATCCTA+CGG + chr5_2:3061344-3061363 Msa0749530:CDS 40.0%
GAGTAATAGAGGATAGCATG+AGG - chr5_2:3061383-3061402 None:intergenic 40.0%
TATGAGAAGACCACCTTTAG+AGG - chr5_2:3061414-3061433 None:intergenic 40.0%
TGCTCTTTAGTCCATATACC+CGG - chr5_2:3061485-3061504 None:intergenic 40.0%
GTAGATGCTGTTCATGACAA+AGG + chr5_2:3061527-3061546 Msa0749530:CDS 40.0%
!! GCCACACAAGTATTGATTTG+AGG + chr5_2:3061655-3061674 Msa0749530:intron 40.0%
CATAATTCACTCAGTCCACA+AGG - chr5_2:3061684-3061703 None:intergenic 40.0%
CACACATGTTACCTTAAGTG+AGG + chr5_2:3061908-3061927 Msa0749530:intron 40.0%
TTGCAAAATTCACACCACCA+AGG + chr5_2:3062270-3062289 Msa0749530:CDS 40.0%
GCAAGAAATGCTATTGAAGC+TGG + chr5_2:3062344-3062363 Msa0749530:CDS 40.0%
GTGCAAATTGCAGGATTTGA+TGG + chr5_2:3062516-3062535 Msa0749530:intron 40.0%
GCAAATTGCAGGATTTGATG+GGG + chr5_2:3062518-3062537 Msa0749530:intron 40.0%
TTTGATGGGGTTGAAATCCA+TGG + chr5_2:3062531-3062550 Msa0749530:CDS 40.0%
AATGACAGGACAGATGAGTA+TGG + chr5_2:3062597-3062616 Msa0749530:CDS 40.0%
GAAGCTGTTGCAAATGAGAT+AGG + chr5_2:3062663-3062682 Msa0749530:CDS 40.0%
GAGATAGGAACAGAAAGAGT+TGG + chr5_2:3062678-3062697 Msa0749530:CDS 40.0%
CATTCTGCATACTCTGCAAA+AGG - chr5_2:3062717-3062736 None:intergenic 40.0%
TTTGCAGAGTATGCAGAATG+TGG + chr5_2:3062717-3062736 Msa0749530:CDS 40.0%
AGACTCCAACCCTAAAGAAT+TGG + chr5_2:3062740-3062759 Msa0749530:CDS 40.0%
GACTCCAACCCTAAAGAATT+GGG + chr5_2:3062741-3062760 Msa0749530:CDS 40.0%
!! AAGTCCCAATTCTTTAGGGT+TGG - chr5_2:3062748-3062767 None:intergenic 40.0%
!! AACCATGAAAGTGCCTTTGA+AGG - chr5_2:3062889-3062908 None:intergenic 40.0%
GAGGTTACGATCGAAATGAT+GGG + chr5_2:3062913-3062932 Msa0749530:CDS 40.0%
GCAAATCTCTTTGGCAAATC+TGG - chr5_2:3063002-3063021 None:intergenic 40.0%
GCATCAAGTGCAAATCTCTT+TGG - chr5_2:3063011-3063030 None:intergenic 40.0%
GTATAACCTAGAACTGGATC+AGG - chr5_2:3063071-3063090 None:intergenic 40.0%
GCTTACTCTTGCTAATGCTT+TGG + chr5_2:3063251-3063270 Msa0749530:three_prime_UTR 40.0%
TTCAACCTCAACTTCAGTAC+AGG + chr5_2:3061114-3061133 Msa0749530:five_prime_UTR 40.0%
CATTTCCTGTACTGAAGTTG+AGG - chr5_2:3061122-3061141 None:intergenic 40.0%
CTCAACTTCAGTACAGGAAA+TGG + chr5_2:3061120-3061139 Msa0749530:exon 40.0%
GTAAGGAGTAAGAAGTGGAA+TGG - chr5_2:3061167-3061186 None:intergenic 40.0%
TAGGATCTTTGTCTTGTGAG+TGG - chr5_2:3061344-3061363 None:intergenic 40.0%
CTCACAAGACAAAGATCCTA+CGG + chr5_2:3061344-3061363 Msa0749530:CDS 40.0%
GAGTAATAGAGGATAGCATG+AGG - chr5_2:3061383-3061402 None:intergenic 40.0%
TATGAGAAGACCACCTTTAG+AGG - chr5_2:3061414-3061433 None:intergenic 40.0%
TGCTCTTTAGTCCATATACC+CGG - chr5_2:3061485-3061504 None:intergenic 40.0%
GTAGATGCTGTTCATGACAA+AGG + chr5_2:3061527-3061546 Msa0749530:CDS 40.0%
!! GCCACACAAGTATTGATTTG+AGG + chr5_2:3061655-3061674 Msa0749530:intron 40.0%
CATAATTCACTCAGTCCACA+AGG - chr5_2:3061684-3061703 None:intergenic 40.0%
CACACATGTTACCTTAAGTG+AGG + chr5_2:3061908-3061927 Msa0749530:intron 40.0%
TTGCAAAATTCACACCACCA+AGG + chr5_2:3062270-3062289 Msa0749530:CDS 40.0%
GCAAGAAATGCTATTGAAGC+TGG + chr5_2:3062344-3062363 Msa0749530:CDS 40.0%
GTGCAAATTGCAGGATTTGA+TGG + chr5_2:3062516-3062535 Msa0749530:intron 40.0%
GCAAATTGCAGGATTTGATG+GGG + chr5_2:3062518-3062537 Msa0749530:intron 40.0%
TTTGATGGGGTTGAAATCCA+TGG + chr5_2:3062531-3062550 Msa0749530:CDS 40.0%
AATGACAGGACAGATGAGTA+TGG + chr5_2:3062597-3062616 Msa0749530:CDS 40.0%
GAAGCTGTTGCAAATGAGAT+AGG + chr5_2:3062663-3062682 Msa0749530:CDS 40.0%
GAGATAGGAACAGAAAGAGT+TGG + chr5_2:3062678-3062697 Msa0749530:CDS 40.0%
CATTCTGCATACTCTGCAAA+AGG - chr5_2:3062717-3062736 None:intergenic 40.0%
TTTGCAGAGTATGCAGAATG+TGG + chr5_2:3062717-3062736 Msa0749530:CDS 40.0%
AGACTCCAACCCTAAAGAAT+TGG + chr5_2:3062740-3062759 Msa0749530:CDS 40.0%
GACTCCAACCCTAAAGAATT+GGG + chr5_2:3062741-3062760 Msa0749530:CDS 40.0%
!! AAGTCCCAATTCTTTAGGGT+TGG - chr5_2:3062748-3062767 None:intergenic 40.0%
!! AACCATGAAAGTGCCTTTGA+AGG - chr5_2:3062889-3062908 None:intergenic 40.0%
GAGGTTACGATCGAAATGAT+GGG + chr5_2:3062913-3062932 Msa0749530:CDS 40.0%
GCAAATCTCTTTGGCAAATC+TGG - chr5_2:3063002-3063021 None:intergenic 40.0%
GCATCAAGTGCAAATCTCTT+TGG - chr5_2:3063011-3063030 None:intergenic 40.0%
GTATAACCTAGAACTGGATC+AGG - chr5_2:3063071-3063090 None:intergenic 40.0%
GCTTACTCTTGCTAATGCTT+TGG + chr5_2:3063251-3063270 Msa0749530:three_prime_UTR 40.0%
! CTAAAAGTGGAAAGTGCAGG+CGG - chr5_2:3061068-3061087 None:intergenic 45.0%
ACTTCAGTACAGGAAATGGC+TGG + chr5_2:3061124-3061143 Msa0749530:exon 45.0%
TAGAGGATAGCATGAGGTTG+TGG - chr5_2:3061377-3061396 None:intergenic 45.0%
! AGGCTCTCTGAGAGTAATAG+AGG - chr5_2:3061394-3061413 None:intergenic 45.0%
TACTCTCAGAGAGCCTCTAA+AGG + chr5_2:3061398-3061417 Msa0749530:CDS 45.0%
! ATGGACTAAAGAGCACGTTG+AGG + chr5_2:3061490-3061509 Msa0749530:CDS 45.0%
GATGCTGTTCATGACAAAGG+CGG + chr5_2:3061530-3061549 Msa0749530:CDS 45.0%
GTTGGAAGAGTTTCTGATGC+TGG + chr5_2:3061578-3061597 Msa0749530:intron 45.0%
!! CTCGCGGTACTTTTGTTTAC+TGG - chr5_2:3061633-3061652 None:intergenic 45.0%
AATACTTGTGTGGCAACTCG+CGG - chr5_2:3061649-3061668 None:intergenic 45.0%
TCAACAGTTTATCAGCCGGA+TGG + chr5_2:3062182-3062201 Msa0749530:intron 45.0%
CAACAGTTTATCAGCCGGAT+GGG + chr5_2:3062183-3062202 Msa0749530:intron 45.0%
GGCTTGTCTGTGGAAGATAT+TGG - chr5_2:3062215-3062234 None:intergenic 45.0%
!!! TGGTTTTAGTGGCTTGTCTG+TGG - chr5_2:3062225-3062244 None:intergenic 45.0%
CAAAATTCACACCACCAAGG+CGG + chr5_2:3062273-3062292 Msa0749530:CDS 45.0%
GTTGAAATCCATGGAGCTCA+TGG + chr5_2:3062540-3062559 Msa0749530:CDS 45.0%
AAACCGACAACGGTTCTCAA+GGG - chr5_2:3062628-3062647 None:intergenic 45.0%
CTTCCAAAGCAAACCGACAA+CGG - chr5_2:3062638-3062657 None:intergenic 45.0%
! CCTTTGAAGGCCTTTCTCAT+TGG - chr5_2:3062876-3062895 None:intergenic 45.0%
CCAATGAGAAAGGCCTTCAA+AGG + chr5_2:3062873-3062892 Msa0749530:CDS 45.0%
!! AAAGGCACTTTCATGGTTGC+AGG + chr5_2:3062891-3062910 Msa0749530:CDS 45.0%
GGAGGTTACGATCGAAATGA+TGG + chr5_2:3062912-3062931 Msa0749530:CDS 45.0%
TCAACGCCATAGCTGAAAAC+AGG + chr5_2:3062937-3062956 Msa0749530:CDS 45.0%
CAACGCCATAGCTGAAAACA+GGG + chr5_2:3062938-3062957 Msa0749530:CDS 45.0%
AGGGCAGACCTAGTTGTATA+TGG + chr5_2:3062957-3062976 Msa0749530:CDS 45.0%
TACGTTCCTGATCCAGTTCT+AGG + chr5_2:3063062-3063081 Msa0749530:CDS 45.0%
TAGTGAGGAGATTCCACACT+TGG - chr5_2:3063136-3063155 None:intergenic 45.0%
! CTAAAAGTGGAAAGTGCAGG+CGG - chr5_2:3061068-3061087 None:intergenic 45.0%
ACTTCAGTACAGGAAATGGC+TGG + chr5_2:3061124-3061143 Msa0749530:exon 45.0%
TAGAGGATAGCATGAGGTTG+TGG - chr5_2:3061377-3061396 None:intergenic 45.0%
! AGGCTCTCTGAGAGTAATAG+AGG - chr5_2:3061394-3061413 None:intergenic 45.0%
TACTCTCAGAGAGCCTCTAA+AGG + chr5_2:3061398-3061417 Msa0749530:CDS 45.0%
! ATGGACTAAAGAGCACGTTG+AGG + chr5_2:3061490-3061509 Msa0749530:CDS 45.0%
GATGCTGTTCATGACAAAGG+CGG + chr5_2:3061530-3061549 Msa0749530:CDS 45.0%
GTTGGAAGAGTTTCTGATGC+TGG + chr5_2:3061578-3061597 Msa0749530:intron 45.0%
!! CTCGCGGTACTTTTGTTTAC+TGG - chr5_2:3061633-3061652 None:intergenic 45.0%
AATACTTGTGTGGCAACTCG+CGG - chr5_2:3061649-3061668 None:intergenic 45.0%
TCAACAGTTTATCAGCCGGA+TGG + chr5_2:3062182-3062201 Msa0749530:intron 45.0%
CAACAGTTTATCAGCCGGAT+GGG + chr5_2:3062183-3062202 Msa0749530:intron 45.0%
GGCTTGTCTGTGGAAGATAT+TGG - chr5_2:3062215-3062234 None:intergenic 45.0%
!!! TGGTTTTAGTGGCTTGTCTG+TGG - chr5_2:3062225-3062244 None:intergenic 45.0%
CAAAATTCACACCACCAAGG+CGG + chr5_2:3062273-3062292 Msa0749530:CDS 45.0%
GTTGAAATCCATGGAGCTCA+TGG + chr5_2:3062540-3062559 Msa0749530:CDS 45.0%
AAACCGACAACGGTTCTCAA+GGG - chr5_2:3062628-3062647 None:intergenic 45.0%
CTTCCAAAGCAAACCGACAA+CGG - chr5_2:3062638-3062657 None:intergenic 45.0%
! CCTTTGAAGGCCTTTCTCAT+TGG - chr5_2:3062876-3062895 None:intergenic 45.0%
CCAATGAGAAAGGCCTTCAA+AGG + chr5_2:3062873-3062892 Msa0749530:CDS 45.0%
!! AAAGGCACTTTCATGGTTGC+AGG + chr5_2:3062891-3062910 Msa0749530:CDS 45.0%
GGAGGTTACGATCGAAATGA+TGG + chr5_2:3062912-3062931 Msa0749530:CDS 45.0%
TCAACGCCATAGCTGAAAAC+AGG + chr5_2:3062937-3062956 Msa0749530:CDS 45.0%
CAACGCCATAGCTGAAAACA+GGG + chr5_2:3062938-3062957 Msa0749530:CDS 45.0%
AGGGCAGACCTAGTTGTATA+TGG + chr5_2:3062957-3062976 Msa0749530:CDS 45.0%
TACGTTCCTGATCCAGTTCT+AGG + chr5_2:3063062-3063081 Msa0749530:CDS 45.0%
TAGTGAGGAGATTCCACACT+TGG - chr5_2:3063136-3063155 None:intergenic 45.0%
AGGTTGTGGAACATTGCCGT+AGG - chr5_2:3061363-3061382 None:intergenic 50.0%
! TCTCAGAGAGCCTCTAAAGG+TGG + chr5_2:3061401-3061420 Msa0749530:CDS 50.0%
CTTCTCATAGCCGAAGCTAC+CGG + chr5_2:3061425-3061444 Msa0749530:CDS 50.0%
TTGAGCAGTGTCAGAGACAC+CGG - chr5_2:3061447-3061466 None:intergenic 50.0%
TCAAGGCTATCCAAACACGC+CGG + chr5_2:3061463-3061482 Msa0749530:CDS 50.0%
ATCCAAACACGCCGGGTATA+TGG + chr5_2:3061471-3061490 Msa0749530:CDS 50.0%
! CTAAAGAGCACGTTGAGGCT+TGG + chr5_2:3061495-3061514 Msa0749530:CDS 50.0%
! GATATTGGTGCTTGCCCATC+CGG - chr5_2:3062200-3062219 None:intergenic 50.0%
CTTAGTGGGGTGCAAATTGC+AGG + chr5_2:3062507-3062526 Msa0749530:intron 50.0%
GACAGGACAGATGAGTATGG+TGG + chr5_2:3062600-3062619 Msa0749530:CDS 50.0%
GATCCCTTGAGAACCGTTGT+CGG + chr5_2:3062622-3062641 Msa0749530:CDS 50.0%
CAAACCGACAACGGTTCTCA+AGG - chr5_2:3062629-3062648 None:intergenic 50.0%
!! GAACCGTTGTCGGTTTGCTT+TGG + chr5_2:3062632-3062651 Msa0749530:CDS 50.0%
TCTCATTGGCACAAGGCTGT+CGG - chr5_2:3062862-3062881 None:intergenic 50.0%
! CAGCCTTGTGCCAATGAGAA+AGG + chr5_2:3062863-3062882 Msa0749530:CDS 50.0%
AGGCCTTTCTCATTGGCACA+AGG - chr5_2:3062869-3062888 None:intergenic 50.0%
!! GGCCTTCAAAGGCACTTTCA+TGG + chr5_2:3062884-3062903 Msa0749530:CDS 50.0%
! GTCTGCCCTGTTTTCAGCTA+TGG - chr5_2:3062946-3062965 None:intergenic 50.0%
ACACTTGGATGCTACAGCAC+CGG - chr5_2:3063121-3063140 None:intergenic 50.0%
AGGTTGTGGAACATTGCCGT+AGG - chr5_2:3061363-3061382 None:intergenic 50.0%
! TCTCAGAGAGCCTCTAAAGG+TGG + chr5_2:3061401-3061420 Msa0749530:CDS 50.0%
CTTCTCATAGCCGAAGCTAC+CGG + chr5_2:3061425-3061444 Msa0749530:CDS 50.0%
TTGAGCAGTGTCAGAGACAC+CGG - chr5_2:3061447-3061466 None:intergenic 50.0%
TCAAGGCTATCCAAACACGC+CGG + chr5_2:3061463-3061482 Msa0749530:CDS 50.0%
ATCCAAACACGCCGGGTATA+TGG + chr5_2:3061471-3061490 Msa0749530:CDS 50.0%
! CTAAAGAGCACGTTGAGGCT+TGG + chr5_2:3061495-3061514 Msa0749530:CDS 50.0%
! GATATTGGTGCTTGCCCATC+CGG - chr5_2:3062200-3062219 None:intergenic 50.0%
CTTAGTGGGGTGCAAATTGC+AGG + chr5_2:3062507-3062526 Msa0749530:intron 50.0%
GACAGGACAGATGAGTATGG+TGG + chr5_2:3062600-3062619 Msa0749530:CDS 50.0%
GATCCCTTGAGAACCGTTGT+CGG + chr5_2:3062622-3062641 Msa0749530:CDS 50.0%
CAAACCGACAACGGTTCTCA+AGG - chr5_2:3062629-3062648 None:intergenic 50.0%
!! GAACCGTTGTCGGTTTGCTT+TGG + chr5_2:3062632-3062651 Msa0749530:CDS 50.0%
TCTCATTGGCACAAGGCTGT+CGG - chr5_2:3062862-3062881 None:intergenic 50.0%
! CAGCCTTGTGCCAATGAGAA+AGG + chr5_2:3062863-3062882 Msa0749530:CDS 50.0%
AGGCCTTTCTCATTGGCACA+AGG - chr5_2:3062869-3062888 None:intergenic 50.0%
!! GGCCTTCAAAGGCACTTTCA+TGG + chr5_2:3062884-3062903 Msa0749530:CDS 50.0%
! GTCTGCCCTGTTTTCAGCTA+TGG - chr5_2:3062946-3062965 None:intergenic 50.0%
ACACTTGGATGCTACAGCAC+CGG - chr5_2:3063121-3063140 None:intergenic 50.0%
! AGTGGAAAGTGCAGGCGGTT+TGG - chr5_2:3061063-3061082 None:intergenic 55.0%
GTCAGAGACACCGGTAGCTT+CGG - chr5_2:3061438-3061457 None:intergenic 55.0%
GGTGTCTCTGACACTGCTCA+AGG + chr5_2:3061446-3061465 Msa0749530:CDS 55.0%
CAAGGCTATCCAAACACGCC+GGG + chr5_2:3061464-3061483 Msa0749530:CDS 55.0%
GTCCATATACCCGGCGTGTT+TGG - chr5_2:3061476-3061495 None:intergenic 55.0%
TCATCTGTCCTTAGCCGCCT+TGG - chr5_2:3062290-3062309 None:intergenic 55.0%
GTAGGTAGCCATGAGCTCCA+TGG - chr5_2:3062551-3062570 None:intergenic 55.0%
TCATTGGCACAAGGCTGTCG+GGG - chr5_2:3062860-3062879 None:intergenic 55.0%
CTCATTGGCACAAGGCTGTC+GGG - chr5_2:3062861-3062880 None:intergenic 55.0%
GGCACTTTCATGGTTGCAGG+AGG + chr5_2:3062894-3062913 Msa0749530:CDS 55.0%
! GGTGCTGTAGCATCCAAGTG+TGG + chr5_2:3063120-3063139 Msa0749530:three_prime_UTR 55.0%
! AGTGGAAAGTGCAGGCGGTT+TGG - chr5_2:3061063-3061082 None:intergenic 55.0%
GTCAGAGACACCGGTAGCTT+CGG - chr5_2:3061438-3061457 None:intergenic 55.0%
GGTGTCTCTGACACTGCTCA+AGG + chr5_2:3061446-3061465 Msa0749530:CDS 55.0%
CAAGGCTATCCAAACACGCC+GGG + chr5_2:3061464-3061483 Msa0749530:CDS 55.0%
GTCCATATACCCGGCGTGTT+TGG - chr5_2:3061476-3061495 None:intergenic 55.0%
TCATCTGTCCTTAGCCGCCT+TGG - chr5_2:3062290-3062309 None:intergenic 55.0%
GTAGGTAGCCATGAGCTCCA+TGG - chr5_2:3062551-3062570 None:intergenic 55.0%
TCATTGGCACAAGGCTGTCG+GGG - chr5_2:3062860-3062879 None:intergenic 55.0%
CTCATTGGCACAAGGCTGTC+GGG - chr5_2:3062861-3062880 None:intergenic 55.0%
GGCACTTTCATGGTTGCAGG+AGG + chr5_2:3062894-3062913 Msa0749530:CDS 55.0%
! GGTGCTGTAGCATCCAAGTG+TGG + chr5_2:3063120-3063139 Msa0749530:three_prime_UTR 55.0%
TCACACCACCAAGGCGGCTA+AGG + chr5_2:3062279-3062298 Msa0749530:CDS 60.0%
TCTGTCCTTAGCCGCCTTGG+TGG - chr5_2:3062287-3062306 None:intergenic 60.0%
TCACACCACCAAGGCGGCTA+AGG + chr5_2:3062279-3062298 Msa0749530:CDS 60.0%
TCTGTCCTTAGCCGCCTTGG+TGG - chr5_2:3062287-3062306 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 3061020 3063462 3061020 ID=Msa0749530;Name=Msa0749530
chr5_2 mRNA 3061020 3063462 3061020 ID=Msa0749530-mRNA-1;Parent=Msa0749530;Name=Msa0749530-mRNA-1;_AED=0.12;_eAED=0.12;_QI=119|0.66|0.75|1|1|1|4|350|353
chr5_2 exon 3061020 3061215 3061020 ID=Msa0749530-mRNA-1:exon:1016;Parent=Msa0749530-mRNA-1
chr5_2 exon 3061328 3061551 3061328 ID=Msa0749530-mRNA-1:exon:1017;Parent=Msa0749530-mRNA-1
chr5_2 exon 3062189 3062365 3062189 ID=Msa0749530-mRNA-1:exon:1018;Parent=Msa0749530-mRNA-1
chr5_2 exon 3062529 3063462 3062529 ID=Msa0749530-mRNA-1:exon:1019;Parent=Msa0749530-mRNA-1
chr5_2 five_prime_UTR 3061020 3061138 3061020 ID=Msa0749530-mRNA-1:five_prime_utr;Parent=Msa0749530-mRNA-1
chr5_2 CDS 3061139 3061215 3061139 ID=Msa0749530-mRNA-1:cds;Parent=Msa0749530-mRNA-1
chr5_2 CDS 3061328 3061551 3061328 ID=Msa0749530-mRNA-1:cds;Parent=Msa0749530-mRNA-1
chr5_2 CDS 3062189 3062365 3062189 ID=Msa0749530-mRNA-1:cds;Parent=Msa0749530-mRNA-1
chr5_2 CDS 3062529 3063112 3062529 ID=Msa0749530-mRNA-1:cds;Parent=Msa0749530-mRNA-1
chr5_2 three_prime_UTR 3063113 3063462 3063113 ID=Msa0749530-mRNA-1:three_prime_utr;Parent=Msa0749530-mRNA-1
Gene Sequence

>Msa0749530

ATGGCTGGTGTTGTTGAATCTGATCCCATTCCACTTCTTACTCCTTACAAGATGGGCAAATTCAATCTATCTCATAGAGTTGTTTTGGCACCACTCACAAGACAAAGATCCTACGGCAATGTTCCACAACCTCATGCTATCCTCTATTACTCTCAGAGAGCCTCTAAAGGTGGTCTTCTCATAGCCGAAGCTACCGGTGTCTCTGACACTGCTCAAGGCTATCCAAACACGCCGGGTATATGGACTAAAGAGCACGTTGAGGCTTGGAAACCTATTGTAGATGCTGTTCATGACAAAGGCGTTTATCAGCCGGATGGGCAAGCACCAATATCTTCCACAGACAAGCCACTAAAACCACAAATTCGAAGTAATGGTATTGATGTTGCAAAATTCACACCACCAAGGCGGCTAAGGACAGATGAAATTCCGAACATTGTCAATGACTTCAGACTCGCTGCAAGAAATGCTATTGAAGCTGGATTTGATGGGGTTGAAATCCATGGAGCTCATGGCTACCTACTTGAACAATTCATGAAAGATAAAGTGAATGACAGGACAGATGAGTATGGTGGATCCCTTGAGAACCGTTGTCGGTTTGCTTTGGAAGTTGTTGAAGCTGTTGCAAATGAGATAGGAACAGAAAGAGTTGGAATAAGATTATCACCTTTTGCAGAGTATGCAGAATGTGGAGACTCCAACCCTAAAGAATTGGGACTTTATATGGTTAATGCCCTCAATAAATATGGTATTCTTTATTGTCACATGGTGGAACCAAGAATGATAACTGTTGGTGAAAAAACTGAATGCCCCGACAGCCTTGTGCCAATGAGAAAGGCCTTCAAAGGCACTTTCATGGTTGCAGGAGGTTACGATCGAAATGATGGGATCAACGCCATAGCTGAAAACAGGGCAGACCTAGTTGTATATGGTCGTTTGTTCTTAGCTAATCCAGATTTGCCAAAGAGATTTGCACTTGATGCTCCTCTAAACAAGTATAACAGGGAGACATTTTACGTTCCTGATCCAGTTCTAGGTTATACTGACTACCCTTTTCTTGAATGA
Protein sequence

>Msa0749530

MAGVVESDPIPLLTPYKMGKFNLSHRVVLAPLTRQRSYGNVPQPHAILYYSQRASKGGLLIAEATGVSDTAQGYPNTPGIWTKEHVEAWKPIVDAVHDKGVYQPDGQAPISSTDKPLKPQIRSNGIDVAKFTPPRRLRTDEIPNIVNDFRLAARNAIEAGFDGVEIHGAHGYLLEQFMKDKVNDRTDEYGGSLENRCRFALEVVEAVANEIGTERVGIRLSPFAEYAECGDSNPKELGLYMVNALNKYGILYCHMVEPRMITVGEKTECPDSLVPMRKAFKGTFMVAGGYDRNDGINAIAENRADLVVYGRLFLANPDLPKRFALDAPLNKYNRETFYVPDPVLGYTDYPFLE*