AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0793930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0793930 MtrunA17_Chr5g0394891 93.225 369 9 1 1 353 1 369 0.0 702
Msa0793930 MtrunA17_Chr5g0394861 89.757 371 20 2 1 353 1 371 0.0 680
Msa0793930 MtrunA17_Chr5g0394841 83.827 371 42 2 1 353 1 371 0.0 642
Msa0793930 MtrunA17_Chr5g0395841 79.620 368 59 2 1 352 3 370 0.0 609
Msa0793930 MtrunA17_Chr5g0394751 81.644 365 45 2 5 353 1 359 0.0 605
Msa0793930 MtrunA17_Chr5g0394811 79.890 363 57 1 7 353 116 478 0.0 605
Msa0793930 MtrunA17_Chr5g0394811 89.157 83 9 0 18 100 1 83 1.22e-43 157
Msa0793930 MtrunA17_Chr5g0394771 80.165 363 50 2 7 353 35 391 0.0 594
Msa0793930 MtrunA17_Chr3g0144001 68.056 360 95 2 10 353 8 363 0.0 506
Msa0793930 MtrunA17_Chr4g0070561 51.213 371 150 5 12 352 19 388 1.34e-128 374
Msa0793930 MtrunA17_Chr5g0394791 69.110 191 49 1 4 184 3 193 8.22e-91 270
Msa0793930 MtrunA17_Chr5g0394801 66.154 195 39 1 151 345 18 185 9.82e-85 256
Msa0793930 MtrunA17_Chr3g0130471 69.091 55 14 1 178 232 1 52 4.95e-18 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0793930 AT1G76690.1 74.255 369 79 1 1 353 3 371 0.0 572
Msa0793930 AT1G76680.1 73.611 360 79 1 10 353 10 369 0.0 557
Msa0793930 AT1G76680.2 68.831 385 79 2 10 353 10 394 0.0 543
Msa0793930 AT1G09400.1 67.273 330 86 2 18 331 1 324 2.78e-165 464
Msa0793930 AT1G09400.2 67.778 270 65 2 78 331 2 265 8.24e-132 377
Msa0793930 AT1G17990.1 68.359 256 62 3 10 250 7 258 1.88e-126 364
Msa0793930 AT1G18020.1 68.359 256 62 3 10 250 7 258 1.88e-126 364
Msa0793930 AT2G06050.2 48.800 375 157 5 12 352 12 385 4.23e-123 360
Msa0793930 AT2G06050.1 48.800 375 157 5 12 352 12 385 4.23e-123 360
Msa0793930 AT2G06050.3 48.800 375 157 5 12 352 12 385 4.23e-123 360
Msa0793930 AT1G17990.2 65.234 256 62 4 10 250 7 250 8.93e-118 342

Find 126 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATCTCTTTGGCAAATC+TGG 0.201994 5_3:-5765445 None:intergenic
ATATAAAGTCCCAATTCTTT+AGG 0.204540 5_3:-5765196 None:intergenic
TAAAGAATTGGGACTTTATA+TGG 0.215484 5_3:+5765198 Msa0793930:CDS
TCACCAACAGTTATCATTCT+TGG 0.270456 5_3:-5765268 None:intergenic
TATAAAGTCCCAATTCTTTA+GGG 0.287263 5_3:-5765195 None:intergenic
CTCCTCTAAACAAGTATAAC+AGG 0.287689 5_3:+5765476 Msa0793930:CDS
ATAAGAGGATTTGATTATAT+TGG 0.291626 5_3:+5765875 Msa0793930:three_prime_UTR
ATTTCATTTCAGAGTTGTTT+TGG 0.300909 5_3:+5763763 Msa0793930:intron
ATCCAAACACGCCGGGTATA+TGG 0.309625 5_3:+5763918 Msa0793930:CDS
AAAGGCACTTTCATGGTTGC+AGG 0.311740 5_3:+5765337 Msa0793930:CDS
TGGAATCTCCTCACTAAATA+AGG 0.319627 5_3:+5765586 Msa0793930:three_prime_UTR
GCTTACTCTTGCTAATGCTT+TGG 0.322777 5_3:+5765697 Msa0793930:three_prime_UTR
GTTAATGCCCTCAATAAATA+TGG 0.323996 5_3:+5765220 Msa0793930:CDS
TCCCTGTTATACTTGTTTAG+AGG 0.330923 5_3:-5765478 None:intergenic
TACGTTCCTGATCCAGTTCT+AGG 0.338102 5_3:+5765508 Msa0793930:CDS
CTCATTGGCACAAGGCTGTC+GGG 0.340556 5_3:-5765304 None:intergenic
GTCCATATACCCGGCGTGTT+TGG 0.348909 5_3:-5763920 None:intergenic
TATGAGAAGACCACCTTTAG+AGG 0.360557 5_3:-5763858 None:intergenic
AGACTCCAACCCTAAAGAAT+TGG 0.376017 5_3:+5765186 Msa0793930:CDS
GTGCAAATTGCAGGATTTGA+TGG 0.377428 5_3:+5764962 Msa0793930:intron
TTGAATTTGCCCATCTTGTA+AGG 0.380236 5_3:-5763630 None:intergenic
CCTTTGAAGGCCTTTCTCAT+TGG 0.383217 5_3:-5765319 None:intergenic
GGCCTTCAAAGGCACTTTCA+TGG 0.385984 5_3:+5765330 Msa0793930:CDS
TCATGAACAGCATCTACAAT+AGG 0.392438 5_3:-5763968 None:intergenic
TCAACGCCATAGCTGAAAAC+AGG 0.396930 5_3:+5765383 Msa0793930:CDS
GCATCAAGTGCAAATCTCTT+TGG 0.407422 5_3:-5765454 None:intergenic
GATATTGGTGCTTGCCCATC+CGG 0.412505 5_3:-5764643 None:intergenic
CGGTTACTTCATTCAAGAAA+AGG 0.415590 5_3:-5765544 None:intergenic
ATACCATTACTTCGAATTTG+TGG 0.416930 5_3:-5764688 None:intergenic
GAACCGTTGTCGGTTTGCTT+TGG 0.420051 5_3:+5765078 Msa0793930:CDS
CTGAAGTCATTGACAATGTT+CGG 0.421977 5_3:-5764760 None:intergenic
CATTTACAAAATGTGTGAAC+TGG 0.425857 5_3:-5765722 None:intergenic
TGCAAATTGCAGGATTTGAT+GGG 0.429144 5_3:+5764963 Msa0793930:intron
AAAGAATACCATATTTATTG+AGG 0.434046 5_3:-5765228 None:intergenic
TCATCTGTCCTTAGCCGCCT+TGG 0.434930 5_3:-5764733 None:intergenic
GCAAATTCAATCTATCTCAT+AGG 0.435780 5_3:+5763643 Msa0793930:CDS
AACCATGAAAGTGCCTTTGA+AGG 0.438354 5_3:-5765332 None:intergenic
CTCAACTTCAGTACAGGAAA+TGG 0.440662 5_3:+5763569 Msa0793930:exon
GTCAGAGACACCGGTAGCTT+CGG 0.447363 5_3:-5763882 None:intergenic
AGTGGAAAGTGCAGGCGGTT+TGG 0.449520 5_3:-5763509 None:intergenic
GAGATAGGAACAGAAAGAGT+TGG 0.455231 5_3:+5765124 Msa0793930:CDS
TTCAACCTCAACTTCAGTAC+AGG 0.468067 5_3:+5763563 Msa0793930:five_prime_UTR
TCTCATTGGCACAAGGCTGT+CGG 0.469927 5_3:-5765305 None:intergenic
GACTCCAACCCTAAAGAATT+GGG 0.474283 5_3:+5765187 Msa0793930:CDS
GGAGGTTACGATCGAAATGA+TGG 0.474346 5_3:+5765358 Msa0793930:CDS
AGGCTCTCTGAGAGTAATAG+AGG 0.476512 5_3:-5763838 None:intergenic
AGGGCAGACCTAGTTGTATA+TGG 0.479108 5_3:+5765403 Msa0793930:CDS
TAGTCAGTATAACCTAGAAC+TGG 0.480015 5_3:-5765520 None:intergenic
ACTTCTTACTCCTTACAAGA+TGG 0.486533 5_3:+5763620 Msa0793930:CDS
TATTTCAGTGACAAACTGAA+TGG 0.489114 5_3:-5765636 None:intergenic
AAGAATACCATATTTATTGA+GGG 0.490058 5_3:-5765227 None:intergenic
CTAAAGAGCACGTTGAGGCT+TGG 0.492352 5_3:+5763942 Msa0793930:CDS
GGTTACTTCATTCAAGAAAA+GGG 0.499808 5_3:-5765543 None:intergenic
CATTCTGCATACTCTGCAAA+AGG 0.500218 5_3:-5765160 None:intergenic
AAGTCCCAATTCTTTAGGGT+TGG 0.500435 5_3:-5765191 None:intergenic
GAAGCTGTTGCAAATGAGAT+AGG 0.501045 5_3:+5765109 Msa0793930:CDS
TAGAGGATAGCATGAGGTTG+TGG 0.502110 5_3:-5763821 None:intergenic
CAGCCTTGTGCCAATGAGAA+AGG 0.506956 5_3:+5765309 Msa0793930:CDS
TAAGGAGTAAGAAGTGGAAT+GGG 0.514396 5_3:-5763612 None:intergenic
TGAAAGATAAAGTGAATGAC+AGG 0.515619 5_3:+5765029 Msa0793930:CDS
CATTTCCTGTACTGAAGTTG+AGG 0.516207 5_3:-5763568 None:intergenic
GTATAACCTAGAACTGGATC+AGG 0.517171 5_3:-5765514 None:intergenic
GCAAGAAATGCTATTGAAGC+TGG 0.517901 5_3:+5764790 Msa0793930:CDS
GGCTTGTCTGTGGAAGATAT+TGG 0.523697 5_3:-5764658 None:intergenic
AAACCACAAATTCGAAGTAA+TGG 0.528619 5_3:+5764685 Msa0793930:CDS
GTAAGGAGTAAGAAGTGGAA+TGG 0.528759 5_3:-5763613 None:intergenic
GATCCCTTGAGAACCGTTGT+CGG 0.529555 5_3:+5765068 Msa0793930:CDS
TTTGATGGGGTTGAAATCCA+TGG 0.529668 5_3:+5764977 Msa0793930:CDS
CTTTCATGAATTGTTCAAGT+AGG 0.530510 5_3:-5765012 None:intergenic
GTTGAAATCCATGGAGCTCA+TGG 0.532007 5_3:+5764986 Msa0793930:CDS
CAAACCGACAACGGTTCTCA+AGG 0.533263 5_3:-5765072 None:intergenic
TAGTGAGGAGATTCCACACT+TGG 0.535155 5_3:-5765579 None:intergenic
TCTGTCCTTAGCCGCCTTGG+TGG 0.535739 5_3:-5764730 None:intergenic
TTGAGCAGTGTCAGAGACAC+CGG 0.539225 5_3:-5763891 None:intergenic
CTTCTTACTCCTTACAAGAT+GGG 0.539764 5_3:+5763621 Msa0793930:CDS
TCACACCACCAAGGCGGCTA+AGG 0.540861 5_3:+5764725 Msa0793930:CDS
ATTCTCAACAGTTTATCAGC+CGG 0.545602 5_3:+5764624 Msa0793930:intron
CAACAGTTTATCAGCCGGAT+GGG 0.548494 5_3:+5764629 Msa0793930:intron
AATGACAGGACAGATGAGTA+TGG 0.553924 5_3:+5765043 Msa0793930:CDS
TCAACAGTTTATCAGCCGGA+TGG 0.554883 5_3:+5764628 Msa0793930:intron
TACTCTCAGAGAGCCTCTAA+AGG 0.554945 5_3:+5763845 Msa0793930:CDS
ACCTAGACGGATTATTTGAA+AGG 0.555324 5_3:+5763475 Msa0793930:five_prime_UTR
AGGCCTTTCTCATTGGCACA+AGG 0.555706 5_3:-5765312 None:intergenic
CTTCTCATAGCCGAAGCTAC+CGG 0.560076 5_3:+5763872 Msa0793930:CDS
CAAGGCTATCCAAACACGCC+GGG 0.568991 5_3:+5763911 Msa0793930:CDS
AAACTAAAAGTGGAAAGTGC+AGG 0.574102 5_3:-5763517 None:intergenic
CCAATGAGAAAGGCCTTCAA+AGG 0.575485 5_3:+5765319 Msa0793930:CDS
ACACTTGGATGCTACAGCAC+CGG 0.578230 5_3:-5765564 None:intergenic
TGGTATTCTTTATTGTCACA+TGG 0.580029 5_3:+5765240 Msa0793930:CDS
TCATTGGCACAAGGCTGTCG+GGG 0.584370 5_3:-5765303 None:intergenic
ACCTTTCAAATAATCCGTCT+AGG 0.587568 5_3:-5763476 None:intergenic
GGCACTTTCATGGTTGCAGG+AGG 0.593746 5_3:+5765340 Msa0793930:CDS
GTAGGTAGCCATGAGCTCCA+TGG 0.595976 5_3:-5764994 None:intergenic
TTTGCAGAGTATGCAGAATG+TGG 0.596323 5_3:+5765163 Msa0793930:CDS
ATTTACAAAATGTGTGAACT+GGG 0.598647 5_3:-5765721 None:intergenic
CTCACAAGACAAAGATCCTA+CGG 0.598712 5_3:+5763791 Msa0793930:CDS
ACTTCAGTACAGGAAATGGC+TGG 0.601525 5_3:+5763573 Msa0793930:exon
ATCTTGTAAGGAGTAAGAAG+TGG 0.605352 5_3:-5763618 None:intergenic
GCAAATTGCAGGATTTGATG+GGG 0.608055 5_3:+5764964 Msa0793930:intron
ATGGCATAAAGCAATTTGCA+AGG 0.617217 5_3:-5765617 None:intergenic
CTTCCAAAGCAAACCGACAA+CGG 0.620487 5_3:-5765081 None:intergenic
GGTGTCTCTGACACTGCTCA+AGG 0.621150 5_3:+5763893 Msa0793930:CDS
TGGCATAAAGCAATTTGCAA+GGG 0.621159 5_3:-5765616 None:intergenic
ACATATGGAACGAACCTAGA+CGG 0.621801 5_3:+5763462 None:intergenic
ACAAACGACCATATACAACT+AGG 0.621826 5_3:-5765411 None:intergenic
AAACCGACAACGGTTCTCAA+GGG 0.626011 5_3:-5765071 None:intergenic
TGCTCTTTAGTCCATATACC+CGG 0.626306 5_3:-5763929 None:intergenic
CAACGCCATAGCTGAAAACA+GGG 0.626950 5_3:+5765384 Msa0793930:CDS
GTAGATGCTGTTCATGACAA+AGG 0.628826 5_3:+5763974 Msa0793930:CDS
GAGGTTACGATCGAAATGAT+GGG 0.630066 5_3:+5765359 Msa0793930:CDS
GATAATGACCTTATTTAGTG+AGG 0.630521 5_3:-5765594 None:intergenic
TATTCTTTATTGTCACATGG+TGG 0.639708 5_3:+5765243 Msa0793930:CDS
TAGGATCTTTGTCTTGTGAG+TGG 0.640382 5_3:-5763788 None:intergenic
TCCTCTAAACAAGTATAACA+GGG 0.645269 5_3:+5765477 Msa0793930:CDS
GACAGGACAGATGAGTATGG+TGG 0.649651 5_3:+5765046 Msa0793930:CDS
TCAAGGCTATCCAAACACGC+CGG 0.650428 5_3:+5763910 Msa0793930:CDS
AGGTTGTGGAACATTGCCGT+AGG 0.656729 5_3:-5763807 None:intergenic
TCTCAGAGAGCCTCTAAAGG+TGG 0.663690 5_3:+5763848 Msa0793930:CDS
GGTGCTGTAGCATCCAAGTG+TGG 0.676085 5_3:+5765566 Msa0793930:three_prime_UTR
CTAAAAGTGGAAAGTGCAGG+CGG 0.679672 5_3:-5763514 None:intergenic
GAGTAATAGAGGATAGCATG+AGG 0.689366 5_3:-5763827 None:intergenic
GAACCAAGAATGATAACTGT+TGG 0.691135 5_3:+5765265 Msa0793930:CDS
TTGCAAAATTCACACCACCA+AGG 0.719184 5_3:+5764716 Msa0793930:CDS
ATGGACTAAAGAGCACGTTG+AGG 0.722206 5_3:+5763937 Msa0793930:CDS
CAAAATTCACACCACCAAGG+CGG 0.741166 5_3:+5764719 Msa0793930:CDS
GATGCTGTTCATGACAAAGG+CGG 0.776205 5_3:+5763977 Msa0793930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTGTTTACAATAAAA+GGG + chr5_3:5764469-5764488 Msa0793930:intron 10.0%
!!! TATCTTAATTTTATAAAATC+AGG - chr5_3:5765841-5765860 None:intergenic 10.0%
!! TAATATTGTTTACAATAAAA+GGG + chr5_3:5764469-5764488 Msa0793930:intron 10.0%
!!! TATCTTAATTTTATAAAATC+AGG - chr5_3:5765841-5765860 None:intergenic 10.0%
!! CTAATATTGTTTACAATAAA+AGG + chr5_3:5764468-5764487 Msa0793930:intron 15.0%
!! CTAATATTGTTTACAATAAA+AGG + chr5_3:5764468-5764487 Msa0793930:intron 15.0%
!!! TTTTATGTTGAAACTAAAAG+TGG - chr5_3:5763530-5763549 None:intergenic 20.0%
!! AATATGGAATGATAAATGAA+TGG - chr5_3:5763686-5763705 None:intergenic 20.0%
!! AACATGACATAAAACATAAA+CGG + chr5_3:5764200-5764219 Msa0793930:intron 20.0%
!! AATATGATATGATATGTTCT+AGG + chr5_3:5764323-5764342 Msa0793930:intron 20.0%
!! TTGTTATCGAGTATTATTAA+GGG + chr5_3:5764513-5764532 Msa0793930:intron 20.0%
!! AATTATGTAACATACTTAGT+GGG + chr5_3:5764939-5764958 Msa0793930:intron 20.0%
!! AAGAATACCATATTTATTGA+GGG - chr5_3:5765230-5765249 None:intergenic 20.0%
!! AAAGAATACCATATTTATTG+AGG - chr5_3:5765231-5765250 None:intergenic 20.0%
!! ATAAGAGGATTTGATTATAT+TGG + chr5_3:5765875-5765894 Msa0793930:three_prime_UTR 20.0%
!!! TTTTATGTTGAAACTAAAAG+TGG - chr5_3:5763530-5763549 None:intergenic 20.0%
!! AATATGGAATGATAAATGAA+TGG - chr5_3:5763686-5763705 None:intergenic 20.0%
!! AACATGACATAAAACATAAA+CGG + chr5_3:5764200-5764219 Msa0793930:intron 20.0%
!! AATATGATATGATATGTTCT+AGG + chr5_3:5764323-5764342 Msa0793930:intron 20.0%
!! TTGTTATCGAGTATTATTAA+GGG + chr5_3:5764513-5764532 Msa0793930:intron 20.0%
!! AATTATGTAACATACTTAGT+GGG + chr5_3:5764939-5764958 Msa0793930:intron 20.0%
!! AAGAATACCATATTTATTGA+GGG - chr5_3:5765230-5765249 None:intergenic 20.0%
!! AAAGAATACCATATTTATTG+AGG - chr5_3:5765231-5765250 None:intergenic 20.0%
!! ATAAGAGGATTTGATTATAT+TGG + chr5_3:5765875-5765894 Msa0793930:three_prime_UTR 20.0%
! TGAGCAATTGAAATTGAATA+TGG - chr5_3:5763702-5763721 None:intergenic 25.0%
!! ATTTCATTTCAGAGTTGTTT+TGG + chr5_3:5763763-5763782 Msa0793930:intron 25.0%
! ACATGACATAAAACATAAAC+GGG + chr5_3:5764201-5764220 Msa0793930:intron 25.0%
!!! TACATTTTGACTAAAGACAT+AGG - chr5_3:5764265-5764284 None:intergenic 25.0%
!! CAAAAGTATATTTGTACAAC+AGG - chr5_3:5764429-5764448 None:intergenic 25.0%
!! CTGTTGTACAAATATACTTT+TGG + chr5_3:5764427-5764446 Msa0793930:intron 25.0%
!! TTACAATAAAAGGGTATGAT+TGG + chr5_3:5764478-5764497 Msa0793930:intron 25.0%
! GTTGTTATCGAGTATTATTA+AGG + chr5_3:5764512-5764531 Msa0793930:intron 25.0%
! TGTTATCGAGTATTATTAAG+GGG + chr5_3:5764514-5764533 Msa0793930:intron 25.0%
! ATCACACATAAATGTTCTAA+TGG + chr5_3:5764561-5764580 Msa0793930:intron 25.0%
! ATAAACTGTTGAGAATAACA+TGG - chr5_3:5764620-5764639 None:intergenic 25.0%
!!! GAGATTTTTGTTACTTTAGA+TGG + chr5_3:5764900-5764919 Msa0793930:intron 25.0%
! CACTAAGTATGTTACATAAT+TGG - chr5_3:5764940-5764959 None:intergenic 25.0%
! CAATTATGTAACATACTTAG+TGG + chr5_3:5764938-5764957 Msa0793930:intron 25.0%
! ATTATGTAACATACTTAGTG+GGG + chr5_3:5764940-5764959 Msa0793930:intron 25.0%
! TATAAAGTCCCAATTCTTTA+GGG - chr5_3:5765198-5765217 None:intergenic 25.0%
! ATATAAAGTCCCAATTCTTT+AGG - chr5_3:5765199-5765218 None:intergenic 25.0%
! TAAAGAATTGGGACTTTATA+TGG + chr5_3:5765198-5765217 Msa0793930:CDS 25.0%
! ATTTACAAAATGTGTGAACT+GGG - chr5_3:5765724-5765743 None:intergenic 25.0%
! TGAGCAATTGAAATTGAATA+TGG - chr5_3:5763702-5763721 None:intergenic 25.0%
!! ATTTCATTTCAGAGTTGTTT+TGG + chr5_3:5763763-5763782 Msa0793930:intron 25.0%
! ACATGACATAAAACATAAAC+GGG + chr5_3:5764201-5764220 Msa0793930:intron 25.0%
!!! TACATTTTGACTAAAGACAT+AGG - chr5_3:5764265-5764284 None:intergenic 25.0%
!! CAAAAGTATATTTGTACAAC+AGG - chr5_3:5764429-5764448 None:intergenic 25.0%
!! CTGTTGTACAAATATACTTT+TGG + chr5_3:5764427-5764446 Msa0793930:intron 25.0%
!! TTACAATAAAAGGGTATGAT+TGG + chr5_3:5764478-5764497 Msa0793930:intron 25.0%
! GTTGTTATCGAGTATTATTA+AGG + chr5_3:5764512-5764531 Msa0793930:intron 25.0%
! TGTTATCGAGTATTATTAAG+GGG + chr5_3:5764514-5764533 Msa0793930:intron 25.0%
! ATCACACATAAATGTTCTAA+TGG + chr5_3:5764561-5764580 Msa0793930:intron 25.0%
! ATAAACTGTTGAGAATAACA+TGG - chr5_3:5764620-5764639 None:intergenic 25.0%
!!! GAGATTTTTGTTACTTTAGA+TGG + chr5_3:5764900-5764919 Msa0793930:intron 25.0%
! CACTAAGTATGTTACATAAT+TGG - chr5_3:5764940-5764959 None:intergenic 25.0%
! CAATTATGTAACATACTTAG+TGG + chr5_3:5764938-5764957 Msa0793930:intron 25.0%
! ATTATGTAACATACTTAGTG+GGG + chr5_3:5764940-5764959 Msa0793930:intron 25.0%
! TATAAAGTCCCAATTCTTTA+GGG - chr5_3:5765198-5765217 None:intergenic 25.0%
! ATATAAAGTCCCAATTCTTT+AGG - chr5_3:5765199-5765218 None:intergenic 25.0%
! TAAAGAATTGGGACTTTATA+TGG + chr5_3:5765198-5765217 Msa0793930:CDS 25.0%
! ATTTACAAAATGTGTGAACT+GGG - chr5_3:5765724-5765743 None:intergenic 25.0%
GCAAATTCAATCTATCTCAT+AGG + chr5_3:5763643-5763662 Msa0793930:CDS 30.0%
GAGTAAATAACACAAACACA+TGG - chr5_3:5763743-5763762 None:intergenic 30.0%
! GTGTGTTTTTCTGTCAAATT+TGG + chr5_3:5763999-5764018 Msa0793930:intron 30.0%
!! TAGGAGTTATTCGTTTTTCT+TGG + chr5_3:5764155-5764174 Msa0793930:intron 30.0%
CATGACATAAAACATAAACG+GGG + chr5_3:5764202-5764221 Msa0793930:intron 30.0%
!! GGCATTTTAATCAGAGTAAT+AGG - chr5_3:5764244-5764263 None:intergenic 30.0%
CTTTAGTCAAAATGTAACTG+CGG + chr5_3:5764269-5764288 Msa0793930:intron 30.0%
GTTATCGAGTATTATTAAGG+GGG + chr5_3:5764515-5764534 Msa0793930:intron 30.0%
AAACCACAAATTCGAAGTAA+TGG + chr5_3:5764685-5764704 Msa0793930:CDS 30.0%
ATACCATTACTTCGAATTTG+TGG - chr5_3:5764691-5764710 None:intergenic 30.0%
CTTTCATGAATTGTTCAAGT+AGG - chr5_3:5765015-5765034 None:intergenic 30.0%
TGAAAGATAAAGTGAATGAC+AGG + chr5_3:5765029-5765048 Msa0793930:CDS 30.0%
GTTAATGCCCTCAATAAATA+TGG + chr5_3:5765220-5765239 Msa0793930:CDS 30.0%
TGGTATTCTTTATTGTCACA+TGG + chr5_3:5765240-5765259 Msa0793930:CDS 30.0%
TATTCTTTATTGTCACATGG+TGG + chr5_3:5765243-5765262 Msa0793930:CDS 30.0%
TCCTCTAAACAAGTATAACA+GGG + chr5_3:5765477-5765496 Msa0793930:CDS 30.0%
GGTTACTTCATTCAAGAAAA+GGG - chr5_3:5765546-5765565 None:intergenic 30.0%
! CTTTTCTTGAATGAAGTAAC+CGG + chr5_3:5765545-5765564 Msa0793930:exon 30.0%
! GATAATGACCTTATTTAGTG+AGG - chr5_3:5765597-5765616 None:intergenic 30.0%
TATTTCAGTGACAAACTGAA+TGG - chr5_3:5765639-5765658 None:intergenic 30.0%
CATTTACAAAATGTGTGAAC+TGG - chr5_3:5765725-5765744 None:intergenic 30.0%
! CAGTTCACACATTTTGTAAA+TGG + chr5_3:5765723-5765742 Msa0793930:three_prime_UTR 30.0%
! ACACATTTTGTAAATGGTCA+GGG + chr5_3:5765729-5765748 Msa0793930:three_prime_UTR 30.0%
! TTTTGTCTAACACTTCTTGT+TGG - chr5_3:5765810-5765829 None:intergenic 30.0%
! ATGAATTTTGCGCTAATAAG+AGG + chr5_3:5765860-5765879 Msa0793930:three_prime_UTR 30.0%
GCAAATTCAATCTATCTCAT+AGG + chr5_3:5763643-5763662 Msa0793930:CDS 30.0%
GAGTAAATAACACAAACACA+TGG - chr5_3:5763743-5763762 None:intergenic 30.0%
! GTGTGTTTTTCTGTCAAATT+TGG + chr5_3:5763999-5764018 Msa0793930:intron 30.0%
!! TAGGAGTTATTCGTTTTTCT+TGG + chr5_3:5764155-5764174 Msa0793930:intron 30.0%
CATGACATAAAACATAAACG+GGG + chr5_3:5764202-5764221 Msa0793930:intron 30.0%
!! GGCATTTTAATCAGAGTAAT+AGG - chr5_3:5764244-5764263 None:intergenic 30.0%
CTTTAGTCAAAATGTAACTG+CGG + chr5_3:5764269-5764288 Msa0793930:intron 30.0%
GTTATCGAGTATTATTAAGG+GGG + chr5_3:5764515-5764534 Msa0793930:intron 30.0%
AAACCACAAATTCGAAGTAA+TGG + chr5_3:5764685-5764704 Msa0793930:CDS 30.0%
ATACCATTACTTCGAATTTG+TGG - chr5_3:5764691-5764710 None:intergenic 30.0%
CTTTCATGAATTGTTCAAGT+AGG - chr5_3:5765015-5765034 None:intergenic 30.0%
TGAAAGATAAAGTGAATGAC+AGG + chr5_3:5765029-5765048 Msa0793930:CDS 30.0%
GTTAATGCCCTCAATAAATA+TGG + chr5_3:5765220-5765239 Msa0793930:CDS 30.0%
TGGTATTCTTTATTGTCACA+TGG + chr5_3:5765240-5765259 Msa0793930:CDS 30.0%
TATTCTTTATTGTCACATGG+TGG + chr5_3:5765243-5765262 Msa0793930:CDS 30.0%
TCCTCTAAACAAGTATAACA+GGG + chr5_3:5765477-5765496 Msa0793930:CDS 30.0%
GGTTACTTCATTCAAGAAAA+GGG - chr5_3:5765546-5765565 None:intergenic 30.0%
! CTTTTCTTGAATGAAGTAAC+CGG + chr5_3:5765545-5765564 Msa0793930:exon 30.0%
! GATAATGACCTTATTTAGTG+AGG - chr5_3:5765597-5765616 None:intergenic 30.0%
TATTTCAGTGACAAACTGAA+TGG - chr5_3:5765639-5765658 None:intergenic 30.0%
CATTTACAAAATGTGTGAAC+TGG - chr5_3:5765725-5765744 None:intergenic 30.0%
! CAGTTCACACATTTTGTAAA+TGG + chr5_3:5765723-5765742 Msa0793930:three_prime_UTR 30.0%
! ACACATTTTGTAAATGGTCA+GGG + chr5_3:5765729-5765748 Msa0793930:three_prime_UTR 30.0%
! TTTTGTCTAACACTTCTTGT+TGG - chr5_3:5765810-5765829 None:intergenic 30.0%
! ATGAATTTTGCGCTAATAAG+AGG + chr5_3:5765860-5765879 Msa0793930:three_prime_UTR 30.0%
!! ACCTAGACGGATTATTTGAA+AGG + chr5_3:5763475-5763494 Msa0793930:five_prime_UTR 35.0%
ACCTTTCAAATAATCCGTCT+AGG - chr5_3:5763479-5763498 None:intergenic 35.0%
! AAACTAAAAGTGGAAAGTGC+AGG - chr5_3:5763520-5763539 None:intergenic 35.0%
TAAGGAGTAAGAAGTGGAAT+GGG - chr5_3:5763615-5763634 None:intergenic 35.0%
ATCTTGTAAGGAGTAAGAAG+TGG - chr5_3:5763621-5763640 None:intergenic 35.0%
ACTTCTTACTCCTTACAAGA+TGG + chr5_3:5763620-5763639 Msa0793930:CDS 35.0%
CTTCTTACTCCTTACAAGAT+GGG + chr5_3:5763621-5763640 Msa0793930:CDS 35.0%
TTGAATTTGCCCATCTTGTA+AGG - chr5_3:5763633-5763652 None:intergenic 35.0%
TCATGAACAGCATCTACAAT+AGG - chr5_3:5763971-5763990 None:intergenic 35.0%
TTCTGTCAAATTTGGCATGT+TGG + chr5_3:5764007-5764026 Msa0793930:intron 35.0%
ACCTCAAATCAATACTTGTG+TGG - chr5_3:5764106-5764125 None:intergenic 35.0%
!! ATTGATTTGAGGTTTCCTTG+TGG + chr5_3:5764113-5764132 Msa0793930:intron 35.0%
ACTGAGTGAATTATGTGACT+AGG + chr5_3:5764136-5764155 Msa0793930:intron 35.0%
AATGTAACTGCGGAAAGAAT+TGG + chr5_3:5764279-5764298 Msa0793930:intron 35.0%
!! ATGATATGTTCTAGGACAGT+AGG + chr5_3:5764331-5764350 Msa0793930:intron 35.0%
! ACACACATGTTACTTAAGTG+AGG + chr5_3:5764354-5764373 Msa0793930:intron 35.0%
ATTCTCAACAGTTTATCAGC+CGG + chr5_3:5764624-5764643 Msa0793930:intron 35.0%
!!! CTTCGAATTTGTGGTTTTAG+TGG - chr5_3:5764682-5764701 None:intergenic 35.0%
CTGAAGTCATTGACAATGTT+CGG - chr5_3:5764763-5764782 None:intergenic 35.0%
!! TTGTTACTTTAGATGGCACT+AGG + chr5_3:5764907-5764926 Msa0793930:intron 35.0%
TGCAAATTGCAGGATTTGAT+GGG + chr5_3:5764963-5764982 Msa0793930:intron 35.0%
GAACCAAGAATGATAACTGT+TGG + chr5_3:5765265-5765284 Msa0793930:CDS 35.0%
TCACCAACAGTTATCATTCT+TGG - chr5_3:5765271-5765290 None:intergenic 35.0%
ACAAACGACCATATACAACT+AGG - chr5_3:5765414-5765433 None:intergenic 35.0%
CTCCTCTAAACAAGTATAAC+AGG + chr5_3:5765476-5765495 Msa0793930:CDS 35.0%
TCCCTGTTATACTTGTTTAG+AGG - chr5_3:5765481-5765500 None:intergenic 35.0%
TAGTCAGTATAACCTAGAAC+TGG - chr5_3:5765523-5765542 None:intergenic 35.0%
CGGTTACTTCATTCAAGAAA+AGG - chr5_3:5765547-5765566 None:intergenic 35.0%
TGGAATCTCCTCACTAAATA+AGG + chr5_3:5765586-5765605 Msa0793930:three_prime_UTR 35.0%
TGGCATAAAGCAATTTGCAA+GGG - chr5_3:5765619-5765638 None:intergenic 35.0%
ATGGCATAAAGCAATTTGCA+AGG - chr5_3:5765620-5765639 None:intergenic 35.0%
! CACACATTTTGTAAATGGTC+AGG + chr5_3:5765728-5765747 Msa0793930:three_prime_UTR 35.0%
!! ACCTAGACGGATTATTTGAA+AGG + chr5_3:5763475-5763494 Msa0793930:five_prime_UTR 35.0%
ACCTTTCAAATAATCCGTCT+AGG - chr5_3:5763479-5763498 None:intergenic 35.0%
! AAACTAAAAGTGGAAAGTGC+AGG - chr5_3:5763520-5763539 None:intergenic 35.0%
TAAGGAGTAAGAAGTGGAAT+GGG - chr5_3:5763615-5763634 None:intergenic 35.0%
ATCTTGTAAGGAGTAAGAAG+TGG - chr5_3:5763621-5763640 None:intergenic 35.0%
ACTTCTTACTCCTTACAAGA+TGG + chr5_3:5763620-5763639 Msa0793930:CDS 35.0%
CTTCTTACTCCTTACAAGAT+GGG + chr5_3:5763621-5763640 Msa0793930:CDS 35.0%
TTGAATTTGCCCATCTTGTA+AGG - chr5_3:5763633-5763652 None:intergenic 35.0%
TCATGAACAGCATCTACAAT+AGG - chr5_3:5763971-5763990 None:intergenic 35.0%
TTCTGTCAAATTTGGCATGT+TGG + chr5_3:5764007-5764026 Msa0793930:intron 35.0%
ACCTCAAATCAATACTTGTG+TGG - chr5_3:5764106-5764125 None:intergenic 35.0%
!! ATTGATTTGAGGTTTCCTTG+TGG + chr5_3:5764113-5764132 Msa0793930:intron 35.0%
ACTGAGTGAATTATGTGACT+AGG + chr5_3:5764136-5764155 Msa0793930:intron 35.0%
AATGTAACTGCGGAAAGAAT+TGG + chr5_3:5764279-5764298 Msa0793930:intron 35.0%
!! ATGATATGTTCTAGGACAGT+AGG + chr5_3:5764331-5764350 Msa0793930:intron 35.0%
! ACACACATGTTACTTAAGTG+AGG + chr5_3:5764354-5764373 Msa0793930:intron 35.0%
ATTCTCAACAGTTTATCAGC+CGG + chr5_3:5764624-5764643 Msa0793930:intron 35.0%
!!! CTTCGAATTTGTGGTTTTAG+TGG - chr5_3:5764682-5764701 None:intergenic 35.0%
CTGAAGTCATTGACAATGTT+CGG - chr5_3:5764763-5764782 None:intergenic 35.0%
!! TTGTTACTTTAGATGGCACT+AGG + chr5_3:5764907-5764926 Msa0793930:intron 35.0%
TGCAAATTGCAGGATTTGAT+GGG + chr5_3:5764963-5764982 Msa0793930:intron 35.0%
GAACCAAGAATGATAACTGT+TGG + chr5_3:5765265-5765284 Msa0793930:CDS 35.0%
TCACCAACAGTTATCATTCT+TGG - chr5_3:5765271-5765290 None:intergenic 35.0%
ACAAACGACCATATACAACT+AGG - chr5_3:5765414-5765433 None:intergenic 35.0%
CTCCTCTAAACAAGTATAAC+AGG + chr5_3:5765476-5765495 Msa0793930:CDS 35.0%
TCCCTGTTATACTTGTTTAG+AGG - chr5_3:5765481-5765500 None:intergenic 35.0%
TAGTCAGTATAACCTAGAAC+TGG - chr5_3:5765523-5765542 None:intergenic 35.0%
CGGTTACTTCATTCAAGAAA+AGG - chr5_3:5765547-5765566 None:intergenic 35.0%
TGGAATCTCCTCACTAAATA+AGG + chr5_3:5765586-5765605 Msa0793930:three_prime_UTR 35.0%
TGGCATAAAGCAATTTGCAA+GGG - chr5_3:5765619-5765638 None:intergenic 35.0%
ATGGCATAAAGCAATTTGCA+AGG - chr5_3:5765620-5765639 None:intergenic 35.0%
! CACACATTTTGTAAATGGTC+AGG + chr5_3:5765728-5765747 Msa0793930:three_prime_UTR 35.0%
TTCAACCTCAACTTCAGTAC+AGG + chr5_3:5763563-5763582 Msa0793930:five_prime_UTR 40.0%
CATTTCCTGTACTGAAGTTG+AGG - chr5_3:5763571-5763590 None:intergenic 40.0%
CTCAACTTCAGTACAGGAAA+TGG + chr5_3:5763569-5763588 Msa0793930:exon 40.0%
GTAAGGAGTAAGAAGTGGAA+TGG - chr5_3:5763616-5763635 None:intergenic 40.0%
TAGGATCTTTGTCTTGTGAG+TGG - chr5_3:5763791-5763810 None:intergenic 40.0%
CTCACAAGACAAAGATCCTA+CGG + chr5_3:5763791-5763810 Msa0793930:CDS 40.0%
GAGTAATAGAGGATAGCATG+AGG - chr5_3:5763830-5763849 None:intergenic 40.0%
TATGAGAAGACCACCTTTAG+AGG - chr5_3:5763861-5763880 None:intergenic 40.0%
TGCTCTTTAGTCCATATACC+CGG - chr5_3:5763932-5763951 None:intergenic 40.0%
GTAGATGCTGTTCATGACAA+AGG + chr5_3:5763974-5763993 Msa0793930:CDS 40.0%
!! GCCACACAAGTATTGATTTG+AGG + chr5_3:5764102-5764121 Msa0793930:intron 40.0%
CATAATTCACTCAGTCCACA+AGG - chr5_3:5764131-5764150 None:intergenic 40.0%
TTGCAAAATTCACACCACCA+AGG + chr5_3:5764716-5764735 Msa0793930:CDS 40.0%
GCAAGAAATGCTATTGAAGC+TGG + chr5_3:5764790-5764809 Msa0793930:CDS 40.0%
GTGCAAATTGCAGGATTTGA+TGG + chr5_3:5764962-5764981 Msa0793930:intron 40.0%
GCAAATTGCAGGATTTGATG+GGG + chr5_3:5764964-5764983 Msa0793930:intron 40.0%
TTTGATGGGGTTGAAATCCA+TGG + chr5_3:5764977-5764996 Msa0793930:CDS 40.0%
AATGACAGGACAGATGAGTA+TGG + chr5_3:5765043-5765062 Msa0793930:CDS 40.0%
GAAGCTGTTGCAAATGAGAT+AGG + chr5_3:5765109-5765128 Msa0793930:CDS 40.0%
GAGATAGGAACAGAAAGAGT+TGG + chr5_3:5765124-5765143 Msa0793930:CDS 40.0%
CATTCTGCATACTCTGCAAA+AGG - chr5_3:5765163-5765182 None:intergenic 40.0%
TTTGCAGAGTATGCAGAATG+TGG + chr5_3:5765163-5765182 Msa0793930:CDS 40.0%
AGACTCCAACCCTAAAGAAT+TGG + chr5_3:5765186-5765205 Msa0793930:CDS 40.0%
GACTCCAACCCTAAAGAATT+GGG + chr5_3:5765187-5765206 Msa0793930:CDS 40.0%
!! AAGTCCCAATTCTTTAGGGT+TGG - chr5_3:5765194-5765213 None:intergenic 40.0%
!! AACCATGAAAGTGCCTTTGA+AGG - chr5_3:5765335-5765354 None:intergenic 40.0%
GAGGTTACGATCGAAATGAT+GGG + chr5_3:5765359-5765378 Msa0793930:CDS 40.0%
GCAAATCTCTTTGGCAAATC+TGG - chr5_3:5765448-5765467 None:intergenic 40.0%
GCATCAAGTGCAAATCTCTT+TGG - chr5_3:5765457-5765476 None:intergenic 40.0%
GTATAACCTAGAACTGGATC+AGG - chr5_3:5765517-5765536 None:intergenic 40.0%
GCTTACTCTTGCTAATGCTT+TGG + chr5_3:5765697-5765716 Msa0793930:three_prime_UTR 40.0%
TTCAACCTCAACTTCAGTAC+AGG + chr5_3:5763563-5763582 Msa0793930:five_prime_UTR 40.0%
CATTTCCTGTACTGAAGTTG+AGG - chr5_3:5763571-5763590 None:intergenic 40.0%
CTCAACTTCAGTACAGGAAA+TGG + chr5_3:5763569-5763588 Msa0793930:exon 40.0%
GTAAGGAGTAAGAAGTGGAA+TGG - chr5_3:5763616-5763635 None:intergenic 40.0%
TAGGATCTTTGTCTTGTGAG+TGG - chr5_3:5763791-5763810 None:intergenic 40.0%
CTCACAAGACAAAGATCCTA+CGG + chr5_3:5763791-5763810 Msa0793930:CDS 40.0%
GAGTAATAGAGGATAGCATG+AGG - chr5_3:5763830-5763849 None:intergenic 40.0%
TATGAGAAGACCACCTTTAG+AGG - chr5_3:5763861-5763880 None:intergenic 40.0%
TGCTCTTTAGTCCATATACC+CGG - chr5_3:5763932-5763951 None:intergenic 40.0%
GTAGATGCTGTTCATGACAA+AGG + chr5_3:5763974-5763993 Msa0793930:CDS 40.0%
!! GCCACACAAGTATTGATTTG+AGG + chr5_3:5764102-5764121 Msa0793930:intron 40.0%
CATAATTCACTCAGTCCACA+AGG - chr5_3:5764131-5764150 None:intergenic 40.0%
TTGCAAAATTCACACCACCA+AGG + chr5_3:5764716-5764735 Msa0793930:CDS 40.0%
GCAAGAAATGCTATTGAAGC+TGG + chr5_3:5764790-5764809 Msa0793930:CDS 40.0%
GTGCAAATTGCAGGATTTGA+TGG + chr5_3:5764962-5764981 Msa0793930:intron 40.0%
GCAAATTGCAGGATTTGATG+GGG + chr5_3:5764964-5764983 Msa0793930:intron 40.0%
TTTGATGGGGTTGAAATCCA+TGG + chr5_3:5764977-5764996 Msa0793930:CDS 40.0%
AATGACAGGACAGATGAGTA+TGG + chr5_3:5765043-5765062 Msa0793930:CDS 40.0%
GAAGCTGTTGCAAATGAGAT+AGG + chr5_3:5765109-5765128 Msa0793930:CDS 40.0%
GAGATAGGAACAGAAAGAGT+TGG + chr5_3:5765124-5765143 Msa0793930:CDS 40.0%
CATTCTGCATACTCTGCAAA+AGG - chr5_3:5765163-5765182 None:intergenic 40.0%
TTTGCAGAGTATGCAGAATG+TGG + chr5_3:5765163-5765182 Msa0793930:CDS 40.0%
AGACTCCAACCCTAAAGAAT+TGG + chr5_3:5765186-5765205 Msa0793930:CDS 40.0%
GACTCCAACCCTAAAGAATT+GGG + chr5_3:5765187-5765206 Msa0793930:CDS 40.0%
!! AAGTCCCAATTCTTTAGGGT+TGG - chr5_3:5765194-5765213 None:intergenic 40.0%
!! AACCATGAAAGTGCCTTTGA+AGG - chr5_3:5765335-5765354 None:intergenic 40.0%
GAGGTTACGATCGAAATGAT+GGG + chr5_3:5765359-5765378 Msa0793930:CDS 40.0%
GCAAATCTCTTTGGCAAATC+TGG - chr5_3:5765448-5765467 None:intergenic 40.0%
GCATCAAGTGCAAATCTCTT+TGG - chr5_3:5765457-5765476 None:intergenic 40.0%
GTATAACCTAGAACTGGATC+AGG - chr5_3:5765517-5765536 None:intergenic 40.0%
GCTTACTCTTGCTAATGCTT+TGG + chr5_3:5765697-5765716 Msa0793930:three_prime_UTR 40.0%
! CTAAAAGTGGAAAGTGCAGG+CGG - chr5_3:5763517-5763536 None:intergenic 45.0%
ACTTCAGTACAGGAAATGGC+TGG + chr5_3:5763573-5763592 Msa0793930:exon 45.0%
TAGAGGATAGCATGAGGTTG+TGG - chr5_3:5763824-5763843 None:intergenic 45.0%
! AGGCTCTCTGAGAGTAATAG+AGG - chr5_3:5763841-5763860 None:intergenic 45.0%
TACTCTCAGAGAGCCTCTAA+AGG + chr5_3:5763845-5763864 Msa0793930:CDS 45.0%
! ATGGACTAAAGAGCACGTTG+AGG + chr5_3:5763937-5763956 Msa0793930:CDS 45.0%
GATGCTGTTCATGACAAAGG+CGG + chr5_3:5763977-5763996 Msa0793930:CDS 45.0%
GTTGGAAGAGTTTCTGATGC+TGG + chr5_3:5764025-5764044 Msa0793930:intron 45.0%
!! CTCGCGGTACTTTTGTTTAC+TGG - chr5_3:5764080-5764099 None:intergenic 45.0%
AATACTTGTGTGGCAACTCG+CGG - chr5_3:5764096-5764115 None:intergenic 45.0%
TCAACAGTTTATCAGCCGGA+TGG + chr5_3:5764628-5764647 Msa0793930:intron 45.0%
CAACAGTTTATCAGCCGGAT+GGG + chr5_3:5764629-5764648 Msa0793930:intron 45.0%
GGCTTGTCTGTGGAAGATAT+TGG - chr5_3:5764661-5764680 None:intergenic 45.0%
!!! TGGTTTTAGTGGCTTGTCTG+TGG - chr5_3:5764671-5764690 None:intergenic 45.0%
CAAAATTCACACCACCAAGG+CGG + chr5_3:5764719-5764738 Msa0793930:CDS 45.0%
GTTGAAATCCATGGAGCTCA+TGG + chr5_3:5764986-5765005 Msa0793930:CDS 45.0%
AAACCGACAACGGTTCTCAA+GGG - chr5_3:5765074-5765093 None:intergenic 45.0%
CTTCCAAAGCAAACCGACAA+CGG - chr5_3:5765084-5765103 None:intergenic 45.0%
! CCTTTGAAGGCCTTTCTCAT+TGG - chr5_3:5765322-5765341 None:intergenic 45.0%
CCAATGAGAAAGGCCTTCAA+AGG + chr5_3:5765319-5765338 Msa0793930:CDS 45.0%
!! AAAGGCACTTTCATGGTTGC+AGG + chr5_3:5765337-5765356 Msa0793930:CDS 45.0%
GGAGGTTACGATCGAAATGA+TGG + chr5_3:5765358-5765377 Msa0793930:CDS 45.0%
TCAACGCCATAGCTGAAAAC+AGG + chr5_3:5765383-5765402 Msa0793930:CDS 45.0%
CAACGCCATAGCTGAAAACA+GGG + chr5_3:5765384-5765403 Msa0793930:CDS 45.0%
AGGGCAGACCTAGTTGTATA+TGG + chr5_3:5765403-5765422 Msa0793930:CDS 45.0%
TACGTTCCTGATCCAGTTCT+AGG + chr5_3:5765508-5765527 Msa0793930:CDS 45.0%
TAGTGAGGAGATTCCACACT+TGG - chr5_3:5765582-5765601 None:intergenic 45.0%
! CTAAAAGTGGAAAGTGCAGG+CGG - chr5_3:5763517-5763536 None:intergenic 45.0%
ACTTCAGTACAGGAAATGGC+TGG + chr5_3:5763573-5763592 Msa0793930:exon 45.0%
TAGAGGATAGCATGAGGTTG+TGG - chr5_3:5763824-5763843 None:intergenic 45.0%
! AGGCTCTCTGAGAGTAATAG+AGG - chr5_3:5763841-5763860 None:intergenic 45.0%
TACTCTCAGAGAGCCTCTAA+AGG + chr5_3:5763845-5763864 Msa0793930:CDS 45.0%
! ATGGACTAAAGAGCACGTTG+AGG + chr5_3:5763937-5763956 Msa0793930:CDS 45.0%
GATGCTGTTCATGACAAAGG+CGG + chr5_3:5763977-5763996 Msa0793930:CDS 45.0%
GTTGGAAGAGTTTCTGATGC+TGG + chr5_3:5764025-5764044 Msa0793930:intron 45.0%
!! CTCGCGGTACTTTTGTTTAC+TGG - chr5_3:5764080-5764099 None:intergenic 45.0%
AATACTTGTGTGGCAACTCG+CGG - chr5_3:5764096-5764115 None:intergenic 45.0%
TCAACAGTTTATCAGCCGGA+TGG + chr5_3:5764628-5764647 Msa0793930:intron 45.0%
CAACAGTTTATCAGCCGGAT+GGG + chr5_3:5764629-5764648 Msa0793930:intron 45.0%
GGCTTGTCTGTGGAAGATAT+TGG - chr5_3:5764661-5764680 None:intergenic 45.0%
!!! TGGTTTTAGTGGCTTGTCTG+TGG - chr5_3:5764671-5764690 None:intergenic 45.0%
CAAAATTCACACCACCAAGG+CGG + chr5_3:5764719-5764738 Msa0793930:CDS 45.0%
GTTGAAATCCATGGAGCTCA+TGG + chr5_3:5764986-5765005 Msa0793930:CDS 45.0%
AAACCGACAACGGTTCTCAA+GGG - chr5_3:5765074-5765093 None:intergenic 45.0%
CTTCCAAAGCAAACCGACAA+CGG - chr5_3:5765084-5765103 None:intergenic 45.0%
! CCTTTGAAGGCCTTTCTCAT+TGG - chr5_3:5765322-5765341 None:intergenic 45.0%
CCAATGAGAAAGGCCTTCAA+AGG + chr5_3:5765319-5765338 Msa0793930:CDS 45.0%
!! AAAGGCACTTTCATGGTTGC+AGG + chr5_3:5765337-5765356 Msa0793930:CDS 45.0%
GGAGGTTACGATCGAAATGA+TGG + chr5_3:5765358-5765377 Msa0793930:CDS 45.0%
TCAACGCCATAGCTGAAAAC+AGG + chr5_3:5765383-5765402 Msa0793930:CDS 45.0%
CAACGCCATAGCTGAAAACA+GGG + chr5_3:5765384-5765403 Msa0793930:CDS 45.0%
AGGGCAGACCTAGTTGTATA+TGG + chr5_3:5765403-5765422 Msa0793930:CDS 45.0%
TACGTTCCTGATCCAGTTCT+AGG + chr5_3:5765508-5765527 Msa0793930:CDS 45.0%
TAGTGAGGAGATTCCACACT+TGG - chr5_3:5765582-5765601 None:intergenic 45.0%
AGGTTGTGGAACATTGCCGT+AGG - chr5_3:5763810-5763829 None:intergenic 50.0%
! TCTCAGAGAGCCTCTAAAGG+TGG + chr5_3:5763848-5763867 Msa0793930:CDS 50.0%
CTTCTCATAGCCGAAGCTAC+CGG + chr5_3:5763872-5763891 Msa0793930:CDS 50.0%
TTGAGCAGTGTCAGAGACAC+CGG - chr5_3:5763894-5763913 None:intergenic 50.0%
TCAAGGCTATCCAAACACGC+CGG + chr5_3:5763910-5763929 Msa0793930:CDS 50.0%
ATCCAAACACGCCGGGTATA+TGG + chr5_3:5763918-5763937 Msa0793930:CDS 50.0%
! CTAAAGAGCACGTTGAGGCT+TGG + chr5_3:5763942-5763961 Msa0793930:CDS 50.0%
! GATATTGGTGCTTGCCCATC+CGG - chr5_3:5764646-5764665 None:intergenic 50.0%
CTTAGTGGGGTGCAAATTGC+AGG + chr5_3:5764953-5764972 Msa0793930:intron 50.0%
GACAGGACAGATGAGTATGG+TGG + chr5_3:5765046-5765065 Msa0793930:CDS 50.0%
GATCCCTTGAGAACCGTTGT+CGG + chr5_3:5765068-5765087 Msa0793930:CDS 50.0%
CAAACCGACAACGGTTCTCA+AGG - chr5_3:5765075-5765094 None:intergenic 50.0%
!! GAACCGTTGTCGGTTTGCTT+TGG + chr5_3:5765078-5765097 Msa0793930:CDS 50.0%
TCTCATTGGCACAAGGCTGT+CGG - chr5_3:5765308-5765327 None:intergenic 50.0%
! CAGCCTTGTGCCAATGAGAA+AGG + chr5_3:5765309-5765328 Msa0793930:CDS 50.0%
AGGCCTTTCTCATTGGCACA+AGG - chr5_3:5765315-5765334 None:intergenic 50.0%
!! GGCCTTCAAAGGCACTTTCA+TGG + chr5_3:5765330-5765349 Msa0793930:CDS 50.0%
! GTCTGCCCTGTTTTCAGCTA+TGG - chr5_3:5765392-5765411 None:intergenic 50.0%
ACACTTGGATGCTACAGCAC+CGG - chr5_3:5765567-5765586 None:intergenic 50.0%
AGGTTGTGGAACATTGCCGT+AGG - chr5_3:5763810-5763829 None:intergenic 50.0%
! TCTCAGAGAGCCTCTAAAGG+TGG + chr5_3:5763848-5763867 Msa0793930:CDS 50.0%
CTTCTCATAGCCGAAGCTAC+CGG + chr5_3:5763872-5763891 Msa0793930:CDS 50.0%
TTGAGCAGTGTCAGAGACAC+CGG - chr5_3:5763894-5763913 None:intergenic 50.0%
TCAAGGCTATCCAAACACGC+CGG + chr5_3:5763910-5763929 Msa0793930:CDS 50.0%
ATCCAAACACGCCGGGTATA+TGG + chr5_3:5763918-5763937 Msa0793930:CDS 50.0%
! CTAAAGAGCACGTTGAGGCT+TGG + chr5_3:5763942-5763961 Msa0793930:CDS 50.0%
! GATATTGGTGCTTGCCCATC+CGG - chr5_3:5764646-5764665 None:intergenic 50.0%
CTTAGTGGGGTGCAAATTGC+AGG + chr5_3:5764953-5764972 Msa0793930:intron 50.0%
GACAGGACAGATGAGTATGG+TGG + chr5_3:5765046-5765065 Msa0793930:CDS 50.0%
GATCCCTTGAGAACCGTTGT+CGG + chr5_3:5765068-5765087 Msa0793930:CDS 50.0%
CAAACCGACAACGGTTCTCA+AGG - chr5_3:5765075-5765094 None:intergenic 50.0%
!! GAACCGTTGTCGGTTTGCTT+TGG + chr5_3:5765078-5765097 Msa0793930:CDS 50.0%
TCTCATTGGCACAAGGCTGT+CGG - chr5_3:5765308-5765327 None:intergenic 50.0%
! CAGCCTTGTGCCAATGAGAA+AGG + chr5_3:5765309-5765328 Msa0793930:CDS 50.0%
AGGCCTTTCTCATTGGCACA+AGG - chr5_3:5765315-5765334 None:intergenic 50.0%
!! GGCCTTCAAAGGCACTTTCA+TGG + chr5_3:5765330-5765349 Msa0793930:CDS 50.0%
! GTCTGCCCTGTTTTCAGCTA+TGG - chr5_3:5765392-5765411 None:intergenic 50.0%
ACACTTGGATGCTACAGCAC+CGG - chr5_3:5765567-5765586 None:intergenic 50.0%
! AGTGGAAAGTGCAGGCGGTT+TGG - chr5_3:5763512-5763531 None:intergenic 55.0%
GTCAGAGACACCGGTAGCTT+CGG - chr5_3:5763885-5763904 None:intergenic 55.0%
GGTGTCTCTGACACTGCTCA+AGG + chr5_3:5763893-5763912 Msa0793930:CDS 55.0%
CAAGGCTATCCAAACACGCC+GGG + chr5_3:5763911-5763930 Msa0793930:CDS 55.0%
GTCCATATACCCGGCGTGTT+TGG - chr5_3:5763923-5763942 None:intergenic 55.0%
TCATCTGTCCTTAGCCGCCT+TGG - chr5_3:5764736-5764755 None:intergenic 55.0%
GTAGGTAGCCATGAGCTCCA+TGG - chr5_3:5764997-5765016 None:intergenic 55.0%
TCATTGGCACAAGGCTGTCG+GGG - chr5_3:5765306-5765325 None:intergenic 55.0%
CTCATTGGCACAAGGCTGTC+GGG - chr5_3:5765307-5765326 None:intergenic 55.0%
GGCACTTTCATGGTTGCAGG+AGG + chr5_3:5765340-5765359 Msa0793930:CDS 55.0%
! GGTGCTGTAGCATCCAAGTG+TGG + chr5_3:5765566-5765585 Msa0793930:three_prime_UTR 55.0%
! AGTGGAAAGTGCAGGCGGTT+TGG - chr5_3:5763512-5763531 None:intergenic 55.0%
GTCAGAGACACCGGTAGCTT+CGG - chr5_3:5763885-5763904 None:intergenic 55.0%
GGTGTCTCTGACACTGCTCA+AGG + chr5_3:5763893-5763912 Msa0793930:CDS 55.0%
CAAGGCTATCCAAACACGCC+GGG + chr5_3:5763911-5763930 Msa0793930:CDS 55.0%
GTCCATATACCCGGCGTGTT+TGG - chr5_3:5763923-5763942 None:intergenic 55.0%
TCATCTGTCCTTAGCCGCCT+TGG - chr5_3:5764736-5764755 None:intergenic 55.0%
GTAGGTAGCCATGAGCTCCA+TGG - chr5_3:5764997-5765016 None:intergenic 55.0%
TCATTGGCACAAGGCTGTCG+GGG - chr5_3:5765306-5765325 None:intergenic 55.0%
CTCATTGGCACAAGGCTGTC+GGG - chr5_3:5765307-5765326 None:intergenic 55.0%
GGCACTTTCATGGTTGCAGG+AGG + chr5_3:5765340-5765359 Msa0793930:CDS 55.0%
! GGTGCTGTAGCATCCAAGTG+TGG + chr5_3:5765566-5765585 Msa0793930:three_prime_UTR 55.0%
TCACACCACCAAGGCGGCTA+AGG + chr5_3:5764725-5764744 Msa0793930:CDS 60.0%
TCTGTCCTTAGCCGCCTTGG+TGG - chr5_3:5764733-5764752 None:intergenic 60.0%
TCACACCACCAAGGCGGCTA+AGG + chr5_3:5764725-5764744 Msa0793930:CDS 60.0%
TCTGTCCTTAGCCGCCTTGG+TGG - chr5_3:5764733-5764752 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 5763469 5765908 5763469 ID=Msa0793930;Name=Msa0793930
chr5_3 mRNA 5763469 5765908 5763469 ID=Msa0793930-mRNA-1;Parent=Msa0793930;Name=Msa0793930-mRNA-1;_AED=0.12;_eAED=0.12;_QI=119|0.66|0.75|1|1|1|4|350|353
chr5_3 exon 5763469 5763664 5763469 ID=Msa0793930-mRNA-1:exon:2274;Parent=Msa0793930-mRNA-1
chr5_3 exon 5763775 5763998 5763775 ID=Msa0793930-mRNA-1:exon:2275;Parent=Msa0793930-mRNA-1
chr5_3 exon 5764635 5764811 5764635 ID=Msa0793930-mRNA-1:exon:2276;Parent=Msa0793930-mRNA-1
chr5_3 exon 5764975 5765908 5764975 ID=Msa0793930-mRNA-1:exon:2277;Parent=Msa0793930-mRNA-1
chr5_3 five_prime_UTR 5763469 5763587 5763469 ID=Msa0793930-mRNA-1:five_prime_utr;Parent=Msa0793930-mRNA-1
chr5_3 CDS 5763588 5763664 5763588 ID=Msa0793930-mRNA-1:cds;Parent=Msa0793930-mRNA-1
chr5_3 CDS 5763775 5763998 5763775 ID=Msa0793930-mRNA-1:cds;Parent=Msa0793930-mRNA-1
chr5_3 CDS 5764635 5764811 5764635 ID=Msa0793930-mRNA-1:cds;Parent=Msa0793930-mRNA-1
chr5_3 CDS 5764975 5765558 5764975 ID=Msa0793930-mRNA-1:cds;Parent=Msa0793930-mRNA-1
chr5_3 three_prime_UTR 5765559 5765908 5765559 ID=Msa0793930-mRNA-1:three_prime_utr;Parent=Msa0793930-mRNA-1
Gene Sequence

>Msa0793930

ATGGCTGGTGTTGTTGAATCTGATCCCATTCCACTTCTTACTCCTTACAAGATGGGCAAATTCAATCTATCTCATAGAGTTGTTTTGGCACCACTCACAAGACAAAGATCCTACGGCAATGTTCCACAACCTCATGCTATCCTCTATTACTCTCAGAGAGCCTCTAAAGGTGGTCTTCTCATAGCCGAAGCTACCGGTGTCTCTGACACTGCTCAAGGCTATCCAAACACGCCGGGTATATGGACTAAAGAGCACGTTGAGGCTTGGAAACCTATTGTAGATGCTGTTCATGACAAAGGCGTTTATCAGCCGGATGGGCAAGCACCAATATCTTCCACAGACAAGCCACTAAAACCACAAATTCGAAGTAATGGTATTGATGTTGCAAAATTCACACCACCAAGGCGGCTAAGGACAGATGAAATTCCGAACATTGTCAATGACTTCAGACTCGCTGCAAGAAATGCTATTGAAGCTGGATTTGATGGGGTTGAAATCCATGGAGCTCATGGCTACCTACTTGAACAATTCATGAAAGATAAAGTGAATGACAGGACAGATGAGTATGGTGGATCCCTTGAGAACCGTTGTCGGTTTGCTTTGGAAGTTGTTGAAGCTGTTGCAAATGAGATAGGAACAGAAAGAGTTGGAATAAGATTATCACCTTTTGCAGAGTATGCAGAATGTGGAGACTCCAACCCTAAAGAATTGGGACTTTATATGGTTAATGCCCTCAATAAATATGGTATTCTTTATTGTCACATGGTGGAACCAAGAATGATAACTGTTGGTGAAAAAACTGAATGCCCCGACAGCCTTGTGCCAATGAGAAAGGCCTTCAAAGGCACTTTCATGGTTGCAGGAGGTTACGATCGAAATGATGGGATCAACGCCATAGCTGAAAACAGGGCAGACCTAGTTGTATATGGTCGTTTGTTCTTAGCTAATCCAGATTTGCCAAAGAGATTTGCACTTGATGCTCCTCTAAACAAGTATAACAGGGAGACATTTTACGTTCCTGATCCAGTTCTAGGTTATACTGACTACCCTTTTCTTGAATGA
Protein sequence

>Msa0793930

MAGVVESDPIPLLTPYKMGKFNLSHRVVLAPLTRQRSYGNVPQPHAILYYSQRASKGGLLIAEATGVSDTAQGYPNTPGIWTKEHVEAWKPIVDAVHDKGVYQPDGQAPISSTDKPLKPQIRSNGIDVAKFTPPRRLRTDEIPNIVNDFRLAARNAIEAGFDGVEIHGAHGYLLEQFMKDKVNDRTDEYGGSLENRCRFALEVVEAVANEIGTERVGIRLSPFAEYAECGDSNPKELGLYMVNALNKYGILYCHMVEPRMITVGEKTECPDSLVPMRKAFKGTFMVAGGYDRNDGINAIAENRADLVVYGRLFLANPDLPKRFALDAPLNKYNRETFYVPDPVLGYTDYPFLE*