AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0831400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0831400 MtrunA17_Chr5g0394891 93.225 369 9 1 1 353 1 369 0.0 702
Msa0831400 MtrunA17_Chr5g0394861 89.757 371 20 2 1 353 1 371 0.0 680
Msa0831400 MtrunA17_Chr5g0394841 83.827 371 42 2 1 353 1 371 0.0 642
Msa0831400 MtrunA17_Chr5g0395841 79.620 368 59 2 1 352 3 370 0.0 609
Msa0831400 MtrunA17_Chr5g0394751 81.644 365 45 2 5 353 1 359 0.0 605
Msa0831400 MtrunA17_Chr5g0394811 79.890 363 57 1 7 353 116 478 0.0 605
Msa0831400 MtrunA17_Chr5g0394811 89.157 83 9 0 18 100 1 83 1.22e-43 157
Msa0831400 MtrunA17_Chr5g0394771 80.165 363 50 2 7 353 35 391 0.0 594
Msa0831400 MtrunA17_Chr3g0144001 68.056 360 95 2 10 353 8 363 0.0 506
Msa0831400 MtrunA17_Chr4g0070561 51.213 371 150 5 12 352 19 388 1.34e-128 374
Msa0831400 MtrunA17_Chr5g0394791 69.110 191 49 1 4 184 3 193 8.22e-91 270
Msa0831400 MtrunA17_Chr5g0394801 66.154 195 39 1 151 345 18 185 9.82e-85 256
Msa0831400 MtrunA17_Chr3g0130471 69.091 55 14 1 178 232 1 52 4.95e-18 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0831400 AT1G76690.1 74.255 369 79 1 1 353 3 371 0.0 572
Msa0831400 AT1G76680.1 73.611 360 79 1 10 353 10 369 0.0 557
Msa0831400 AT1G76680.2 68.831 385 79 2 10 353 10 394 0.0 543
Msa0831400 AT1G09400.1 67.273 330 86 2 18 331 1 324 2.78e-165 464
Msa0831400 AT1G09400.2 67.778 270 65 2 78 331 2 265 8.24e-132 377
Msa0831400 AT1G17990.1 68.359 256 62 3 10 250 7 258 1.88e-126 364
Msa0831400 AT1G18020.1 68.359 256 62 3 10 250 7 258 1.88e-126 364
Msa0831400 AT2G06050.2 48.800 375 157 5 12 352 12 385 4.23e-123 360
Msa0831400 AT2G06050.1 48.800 375 157 5 12 352 12 385 4.23e-123 360
Msa0831400 AT2G06050.3 48.800 375 157 5 12 352 12 385 4.23e-123 360
Msa0831400 AT1G17990.2 65.234 256 62 4 10 250 7 250 8.93e-118 342

Find 120 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATCTCTTTGGCAAATC+TGG 0.201994 5_4:+4401698 None:intergenic
ATATAAAGTCCCAATTCTTT+AGG 0.204540 5_4:+4401947 None:intergenic
TAAAGAATTGGGACTTTATA+TGG 0.215484 5_4:-4401945 Msa0831400:CDS
TCACCAACAGTTATCATTCT+TGG 0.270456 5_4:+4401875 None:intergenic
TATAAAGTCCCAATTCTTTA+GGG 0.287263 5_4:+4401948 None:intergenic
CTCCTCTAAACAAGTATAAC+AGG 0.287689 5_4:-4401667 Msa0831400:CDS
ATAAGAGGATTTGATTATAT+TGG 0.291626 5_4:-4401268 Msa0831400:three_prime_UTR
ATTTCATTTCAGAGTTGTTT+TGG 0.300909 5_4:-4403381 Msa0831400:intron
ATCCAAACACGCCGGGTATA+TGG 0.309625 5_4:-4403226 Msa0831400:CDS
AAAGGCACTTTCATGGTTGC+AGG 0.311740 5_4:-4401806 Msa0831400:CDS
TGGAATCTCCTCACTAAATA+AGG 0.319627 5_4:-4401557 Msa0831400:three_prime_UTR
GCTTACTCTTGCTAATGCTT+TGG 0.322777 5_4:-4401446 Msa0831400:three_prime_UTR
GTTAATGCCCTCAATAAATA+TGG 0.323996 5_4:-4401923 Msa0831400:CDS
TCCCTGTTATACTTGTTTAG+AGG 0.330923 5_4:+4401665 None:intergenic
TACGTTCCTGATCCAGTTCT+AGG 0.338102 5_4:-4401635 Msa0831400:CDS
CTCATTGGCACAAGGCTGTC+GGG 0.340556 5_4:+4401839 None:intergenic
GTCCATATACCCGGCGTGTT+TGG 0.348909 5_4:+4403224 None:intergenic
TATGAGAAGACCACCTTTAG+AGG 0.360557 5_4:+4403286 None:intergenic
AGACTCCAACCCTAAAGAAT+TGG 0.376017 5_4:-4401957 Msa0831400:CDS
GTGCAAATTGCAGGATTTGA+TGG 0.377428 5_4:-4402181 Msa0831400:intron
TTGAATTTGCCCATCTTGTA+AGG 0.380236 5_4:+4403514 None:intergenic
CCTTTGAAGGCCTTTCTCAT+TGG 0.383217 5_4:+4401824 None:intergenic
GGCCTTCAAAGGCACTTTCA+TGG 0.385984 5_4:-4401813 Msa0831400:CDS
TCATGAACAGCATCTACAAT+AGG 0.392438 5_4:+4403176 None:intergenic
TCAACGCCATAGCTGAAAAC+AGG 0.396930 5_4:-4401760 Msa0831400:CDS
GCATCAAGTGCAAATCTCTT+TGG 0.407422 5_4:+4401689 None:intergenic
GATATTGGTGCTTGCCCATC+CGG 0.412505 5_4:+4402500 None:intergenic
CGGTTACTTCATTCAAGAAA+AGG 0.415590 5_4:+4401599 None:intergenic
ATACCATTACTTCGAATTTG+TGG 0.416930 5_4:+4402455 None:intergenic
GAACCGTTGTCGGTTTGCTT+TGG 0.420051 5_4:-4402065 Msa0831400:CDS
CTGAAGTCATTGACAATGTT+CGG 0.421977 5_4:+4402383 None:intergenic
CATTTACAAAATGTGTGAAC+TGG 0.425857 5_4:+4401421 None:intergenic
TGCAAATTGCAGGATTTGAT+GGG 0.429144 5_4:-4402180 Msa0831400:intron
AAAGAATACCATATTTATTG+AGG 0.434046 5_4:+4401915 None:intergenic
TCATCTGTCCTTAGCCGCCT+TGG 0.434930 5_4:+4402410 None:intergenic
GCAAATTCAATCTATCTCAT+AGG 0.435780 5_4:-4403501 Msa0831400:intron
AACCATGAAAGTGCCTTTGA+AGG 0.438354 5_4:+4401811 None:intergenic
CTCAACTTCAGTACAGGAAA+TGG 0.440662 5_4:-4403575 Msa0831400:exon
GTCAGAGACACCGGTAGCTT+CGG 0.447363 5_4:+4403262 None:intergenic
GAGATAGGAACAGAAAGAGT+TGG 0.455231 5_4:-4402019 Msa0831400:CDS
TTCAACCTCAACTTCAGTAC+AGG 0.468067 5_4:-4403581 Msa0831400:five_prime_UTR
TCTCATTGGCACAAGGCTGT+CGG 0.469927 5_4:+4401838 None:intergenic
GACTCCAACCCTAAAGAATT+GGG 0.474283 5_4:-4401956 Msa0831400:CDS
GGAGGTTACGATCGAAATGA+TGG 0.474346 5_4:-4401785 Msa0831400:CDS
AGGCTCTCTGAGAGTAATAG+AGG 0.476512 5_4:+4403306 None:intergenic
AGGGCAGACCTAGTTGTATA+TGG 0.479108 5_4:-4401740 Msa0831400:CDS
TAGTCAGTATAACCTAGAAC+TGG 0.480015 5_4:+4401623 None:intergenic
ACTTCTTACTCCTTACAAGA+TGG 0.486533 5_4:-4403524 Msa0831400:CDS
TATTTCAGTGACAAACTGAA+TGG 0.489114 5_4:+4401507 None:intergenic
AAGAATACCATATTTATTGA+GGG 0.490058 5_4:+4401916 None:intergenic
CTAAAGAGCACGTTGAGGCT+TGG 0.492352 5_4:-4403202 Msa0831400:CDS
GGTTACTTCATTCAAGAAAA+GGG 0.499808 5_4:+4401600 None:intergenic
CATTCTGCATACTCTGCAAA+AGG 0.500218 5_4:+4401983 None:intergenic
AAGTCCCAATTCTTTAGGGT+TGG 0.500435 5_4:+4401952 None:intergenic
GAAGCTGTTGCAAATGAGAT+AGG 0.501045 5_4:-4402034 Msa0831400:CDS
TAGAGGATAGCATGAGGTTG+TGG 0.502110 5_4:+4403323 None:intergenic
CAGCCTTGTGCCAATGAGAA+AGG 0.506956 5_4:-4401834 Msa0831400:CDS
TAAGGAGTAAGAAGTGGAAT+GGG 0.514396 5_4:+4403532 None:intergenic
TGAAAGATAAAGTGAATGAC+AGG 0.515619 5_4:-4402114 Msa0831400:CDS
CATTTCCTGTACTGAAGTTG+AGG 0.516207 5_4:+4403576 None:intergenic
GTATAACCTAGAACTGGATC+AGG 0.517171 5_4:+4401629 None:intergenic
GCAAGAAATGCTATTGAAGC+TGG 0.517901 5_4:-4402353 Msa0831400:intron
GGCTTGTCTGTGGAAGATAT+TGG 0.523697 5_4:+4402485 None:intergenic
AAACCACAAATTCGAAGTAA+TGG 0.528619 5_4:-4402458 Msa0831400:CDS
GTAAGGAGTAAGAAGTGGAA+TGG 0.528759 5_4:+4403531 None:intergenic
GATCCCTTGAGAACCGTTGT+CGG 0.529555 5_4:-4402075 Msa0831400:CDS
TTTGATGGGGTTGAAATCCA+TGG 0.529668 5_4:-4402166 Msa0831400:CDS
CTTTCATGAATTGTTCAAGT+AGG 0.530510 5_4:+4402131 None:intergenic
GTTGAAATCCATGGAGCTCA+TGG 0.532007 5_4:-4402157 Msa0831400:CDS
CAAACCGACAACGGTTCTCA+AGG 0.533263 5_4:+4402071 None:intergenic
TAGTGAGGAGATTCCACACT+TGG 0.535155 5_4:+4401564 None:intergenic
TCTGTCCTTAGCCGCCTTGG+TGG 0.535739 5_4:+4402413 None:intergenic
TTGAGCAGTGTCAGAGACAC+CGG 0.539225 5_4:+4403253 None:intergenic
CTTCTTACTCCTTACAAGAT+GGG 0.539764 5_4:-4403523 Msa0831400:CDS
TCACACCACCAAGGCGGCTA+AGG 0.540861 5_4:-4402418 Msa0831400:CDS
ATTCTCAACAGTTTATCAGC+CGG 0.545602 5_4:-4402519 Msa0831400:intron
CAACAGTTTATCAGCCGGAT+GGG 0.548494 5_4:-4402514 Msa0831400:intron
AATGACAGGACAGATGAGTA+TGG 0.553924 5_4:-4402100 Msa0831400:CDS
TCAACAGTTTATCAGCCGGA+TGG 0.554883 5_4:-4402515 Msa0831400:intron
TACTCTCAGAGAGCCTCTAA+AGG 0.554945 5_4:-4403299 Msa0831400:CDS
AGGCCTTTCTCATTGGCACA+AGG 0.555706 5_4:+4401831 None:intergenic
CTTCTCATAGCCGAAGCTAC+CGG 0.560076 5_4:-4403272 Msa0831400:CDS
CAAGGCTATCCAAACACGCC+GGG 0.568991 5_4:-4403233 Msa0831400:CDS
CCAATGAGAAAGGCCTTCAA+AGG 0.575485 5_4:-4401824 Msa0831400:CDS
ACACTTGGATGCTACAGCAC+CGG 0.578230 5_4:+4401579 None:intergenic
TGGTATTCTTTATTGTCACA+TGG 0.580029 5_4:-4401903 Msa0831400:CDS
TCATTGGCACAAGGCTGTCG+GGG 0.584370 5_4:+4401840 None:intergenic
GGCACTTTCATGGTTGCAGG+AGG 0.593746 5_4:-4401803 Msa0831400:CDS
GTAGGTAGCCATGAGCTCCA+TGG 0.595976 5_4:+4402149 None:intergenic
TTTGCAGAGTATGCAGAATG+TGG 0.596323 5_4:-4401980 Msa0831400:CDS
ATTTACAAAATGTGTGAACT+GGG 0.598647 5_4:+4401422 None:intergenic
CTCACAAGACAAAGATCCTA+CGG 0.598712 5_4:-4403353 Msa0831400:CDS
ACTTCAGTACAGGAAATGGC+TGG 0.601525 5_4:-4403571 Msa0831400:exon
ATCTTGTAAGGAGTAAGAAG+TGG 0.605352 5_4:+4403526 None:intergenic
GCAAATTGCAGGATTTGATG+GGG 0.608055 5_4:-4402179 Msa0831400:intron
ATGGCATAAAGCAATTTGCA+AGG 0.617217 5_4:+4401526 None:intergenic
CTTCCAAAGCAAACCGACAA+CGG 0.620487 5_4:+4402062 None:intergenic
GGTGTCTCTGACACTGCTCA+AGG 0.621150 5_4:-4403251 Msa0831400:CDS
TGGCATAAAGCAATTTGCAA+GGG 0.621159 5_4:+4401527 None:intergenic
ACAAACGACCATATACAACT+AGG 0.621826 5_4:+4401732 None:intergenic
AAACCGACAACGGTTCTCAA+GGG 0.626011 5_4:+4402072 None:intergenic
TGCTCTTTAGTCCATATACC+CGG 0.626306 5_4:+4403215 None:intergenic
CAACGCCATAGCTGAAAACA+GGG 0.626950 5_4:-4401759 Msa0831400:CDS
GTAGATGCTGTTCATGACAA+AGG 0.628826 5_4:-4403170 Msa0831400:CDS
GAGGTTACGATCGAAATGAT+GGG 0.630066 5_4:-4401784 Msa0831400:CDS
GATAATGACCTTATTTAGTG+AGG 0.630521 5_4:+4401549 None:intergenic
TATTCTTTATTGTCACATGG+TGG 0.639708 5_4:-4401900 Msa0831400:CDS
TAGGATCTTTGTCTTGTGAG+TGG 0.640382 5_4:+4403356 None:intergenic
TCCTCTAAACAAGTATAACA+GGG 0.645269 5_4:-4401666 Msa0831400:CDS
GACAGGACAGATGAGTATGG+TGG 0.649651 5_4:-4402097 Msa0831400:CDS
TCAAGGCTATCCAAACACGC+CGG 0.650428 5_4:-4403234 Msa0831400:CDS
AGGTTGTGGAACATTGCCGT+AGG 0.656729 5_4:+4403337 None:intergenic
TCTCAGAGAGCCTCTAAAGG+TGG 0.663690 5_4:-4403296 Msa0831400:CDS
GGTGCTGTAGCATCCAAGTG+TGG 0.676085 5_4:-4401577 Msa0831400:three_prime_UTR
GAGTAATAGAGGATAGCATG+AGG 0.689366 5_4:+4403317 None:intergenic
GAACCAAGAATGATAACTGT+TGG 0.691135 5_4:-4401878 Msa0831400:CDS
TTGCAAAATTCACACCACCA+AGG 0.719184 5_4:-4402427 Msa0831400:CDS
ATGGACTAAAGAGCACGTTG+AGG 0.722206 5_4:-4403207 Msa0831400:CDS
CAAAATTCACACCACCAAGG+CGG 0.741166 5_4:-4402424 Msa0831400:CDS
GATGCTGTTCATGACAAAGG+CGG 0.776205 5_4:-4403167 Msa0831400:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTGTTTACAATAAAA+GGG - chr5_4:4402194-4402213 Msa0831400:intron 10.0%
!!! TATCTTAATTTTATAAAATC+AGG + chr5_4:4403566-4403585 None:intergenic 10.0%
!! TAATATTGTTTACAATAAAA+GGG - chr5_4:4402194-4402213 Msa0831400:intron 10.0%
!!! TATCTTAATTTTATAAAATC+AGG + chr5_4:4403566-4403585 None:intergenic 10.0%
!! CTAATATTGTTTACAATAAA+AGG - chr5_4:4402193-4402212 Msa0831400:intron 15.0%
!! CTAATATTGTTTACAATAAA+AGG - chr5_4:4402193-4402212 Msa0831400:intron 15.0%
!! AATATGGAATGATAAATGAA+TGG + chr5_4:4401410-4401429 None:intergenic 20.0%
!! AACATGACATAAAACATAAA+CGG - chr5_4:4401924-4401943 Msa0831400:CDS 20.0%
!! AATATGATATGATATGTTCT+AGG - chr5_4:4402047-4402066 Msa0831400:CDS 20.0%
!! TTGTTATCGAGTATTATTAA+GGG - chr5_4:4402238-4402257 Msa0831400:intron 20.0%
!! AATTATGTAACATACTTAGT+GGG - chr5_4:4402664-4402683 Msa0831400:intron 20.0%
!! AAGAATACCATATTTATTGA+GGG + chr5_4:4402955-4402974 None:intergenic 20.0%
!! AAAGAATACCATATTTATTG+AGG + chr5_4:4402956-4402975 None:intergenic 20.0%
!! ATAAGAGGATTTGATTATAT+TGG - chr5_4:4403600-4403619 Msa0831400:five_prime_UTR 20.0%
!! AATATGGAATGATAAATGAA+TGG + chr5_4:4401410-4401429 None:intergenic 20.0%
!! AACATGACATAAAACATAAA+CGG - chr5_4:4401924-4401943 Msa0831400:CDS 20.0%
!! AATATGATATGATATGTTCT+AGG - chr5_4:4402047-4402066 Msa0831400:CDS 20.0%
!! TTGTTATCGAGTATTATTAA+GGG - chr5_4:4402238-4402257 Msa0831400:intron 20.0%
!! AATTATGTAACATACTTAGT+GGG - chr5_4:4402664-4402683 Msa0831400:intron 20.0%
!! AAGAATACCATATTTATTGA+GGG + chr5_4:4402955-4402974 None:intergenic 20.0%
!! AAAGAATACCATATTTATTG+AGG + chr5_4:4402956-4402975 None:intergenic 20.0%
!! ATAAGAGGATTTGATTATAT+TGG - chr5_4:4403600-4403619 Msa0831400:five_prime_UTR 20.0%
! TGAGCAATTGAAATTGAATA+TGG + chr5_4:4401426-4401445 None:intergenic 25.0%
!! ATTTCATTTCAGAGTTGTTT+TGG - chr5_4:4401487-4401506 Msa0831400:three_prime_UTR 25.0%
! ACATGACATAAAACATAAAC+GGG - chr5_4:4401925-4401944 Msa0831400:CDS 25.0%
!!! TACATTTTGACTAAAGACAT+AGG + chr5_4:4401989-4402008 None:intergenic 25.0%
!! CAAAAGTATATTTGTACAAC+AGG + chr5_4:4402154-4402173 None:intergenic 25.0%
!! CTGTTGTACAAATATACTTT+TGG - chr5_4:4402152-4402171 Msa0831400:CDS 25.0%
!! TTACAATAAAAGGGTATGAT+TGG - chr5_4:4402203-4402222 Msa0831400:intron 25.0%
! GTTGTTATCGAGTATTATTA+AGG - chr5_4:4402237-4402256 Msa0831400:intron 25.0%
! TGTTATCGAGTATTATTAAG+GGG - chr5_4:4402239-4402258 Msa0831400:intron 25.0%
! ATCACACATAAATGTTCTAA+TGG - chr5_4:4402286-4402305 Msa0831400:intron 25.0%
! ATAAACTGTTGAGAATAACA+TGG + chr5_4:4402345-4402364 None:intergenic 25.0%
!!! GAGATTTTTGTTACTTTAGA+TGG - chr5_4:4402625-4402644 Msa0831400:intron 25.0%
! CACTAAGTATGTTACATAAT+TGG + chr5_4:4402665-4402684 None:intergenic 25.0%
! CAATTATGTAACATACTTAG+TGG - chr5_4:4402663-4402682 Msa0831400:intron 25.0%
! ATTATGTAACATACTTAGTG+GGG - chr5_4:4402665-4402684 Msa0831400:intron 25.0%
! TATAAAGTCCCAATTCTTTA+GGG + chr5_4:4402923-4402942 None:intergenic 25.0%
! ATATAAAGTCCCAATTCTTT+AGG + chr5_4:4402924-4402943 None:intergenic 25.0%
! TAAAGAATTGGGACTTTATA+TGG - chr5_4:4402923-4402942 Msa0831400:intron 25.0%
! ATTTACAAAATGTGTGAACT+GGG + chr5_4:4403449-4403468 None:intergenic 25.0%
! TGAGCAATTGAAATTGAATA+TGG + chr5_4:4401426-4401445 None:intergenic 25.0%
!! ATTTCATTTCAGAGTTGTTT+TGG - chr5_4:4401487-4401506 Msa0831400:three_prime_UTR 25.0%
! ACATGACATAAAACATAAAC+GGG - chr5_4:4401925-4401944 Msa0831400:CDS 25.0%
!!! TACATTTTGACTAAAGACAT+AGG + chr5_4:4401989-4402008 None:intergenic 25.0%
!! CAAAAGTATATTTGTACAAC+AGG + chr5_4:4402154-4402173 None:intergenic 25.0%
!! CTGTTGTACAAATATACTTT+TGG - chr5_4:4402152-4402171 Msa0831400:CDS 25.0%
!! TTACAATAAAAGGGTATGAT+TGG - chr5_4:4402203-4402222 Msa0831400:intron 25.0%
! GTTGTTATCGAGTATTATTA+AGG - chr5_4:4402237-4402256 Msa0831400:intron 25.0%
! TGTTATCGAGTATTATTAAG+GGG - chr5_4:4402239-4402258 Msa0831400:intron 25.0%
! ATCACACATAAATGTTCTAA+TGG - chr5_4:4402286-4402305 Msa0831400:intron 25.0%
! ATAAACTGTTGAGAATAACA+TGG + chr5_4:4402345-4402364 None:intergenic 25.0%
!!! GAGATTTTTGTTACTTTAGA+TGG - chr5_4:4402625-4402644 Msa0831400:intron 25.0%
! CACTAAGTATGTTACATAAT+TGG + chr5_4:4402665-4402684 None:intergenic 25.0%
! CAATTATGTAACATACTTAG+TGG - chr5_4:4402663-4402682 Msa0831400:intron 25.0%
! ATTATGTAACATACTTAGTG+GGG - chr5_4:4402665-4402684 Msa0831400:intron 25.0%
! TATAAAGTCCCAATTCTTTA+GGG + chr5_4:4402923-4402942 None:intergenic 25.0%
! ATATAAAGTCCCAATTCTTT+AGG + chr5_4:4402924-4402943 None:intergenic 25.0%
! TAAAGAATTGGGACTTTATA+TGG - chr5_4:4402923-4402942 Msa0831400:intron 25.0%
! ATTTACAAAATGTGTGAACT+GGG + chr5_4:4403449-4403468 None:intergenic 25.0%
GCAAATTCAATCTATCTCAT+AGG - chr5_4:4401367-4401386 Msa0831400:three_prime_UTR 30.0%
GAGTAAATAACACAAACACA+TGG + chr5_4:4401467-4401486 None:intergenic 30.0%
! GTGTGTTTTTCTGTCAAATT+TGG - chr5_4:4401723-4401742 Msa0831400:CDS 30.0%
!! TAGGAGTTATTCGTTTTTCT+TGG - chr5_4:4401879-4401898 Msa0831400:CDS 30.0%
CATGACATAAAACATAAACG+GGG - chr5_4:4401926-4401945 Msa0831400:CDS 30.0%
!! GGCATTTTAATCAGAGTAAT+AGG + chr5_4:4401968-4401987 None:intergenic 30.0%
CTTTAGTCAAAATGTAACTG+CGG - chr5_4:4401993-4402012 Msa0831400:CDS 30.0%
GTTATCGAGTATTATTAAGG+GGG - chr5_4:4402240-4402259 Msa0831400:intron 30.0%
AAACCACAAATTCGAAGTAA+TGG - chr5_4:4402410-4402429 Msa0831400:CDS 30.0%
ATACCATTACTTCGAATTTG+TGG + chr5_4:4402416-4402435 None:intergenic 30.0%
CTTTCATGAATTGTTCAAGT+AGG + chr5_4:4402740-4402759 None:intergenic 30.0%
TGAAAGATAAAGTGAATGAC+AGG - chr5_4:4402754-4402773 Msa0831400:intron 30.0%
GTTAATGCCCTCAATAAATA+TGG - chr5_4:4402945-4402964 Msa0831400:intron 30.0%
TGGTATTCTTTATTGTCACA+TGG - chr5_4:4402965-4402984 Msa0831400:intron 30.0%
TATTCTTTATTGTCACATGG+TGG - chr5_4:4402968-4402987 Msa0831400:intron 30.0%
TCCTCTAAACAAGTATAACA+GGG - chr5_4:4403202-4403221 Msa0831400:CDS 30.0%
GGTTACTTCATTCAAGAAAA+GGG + chr5_4:4403271-4403290 None:intergenic 30.0%
! CTTTTCTTGAATGAAGTAAC+CGG - chr5_4:4403270-4403289 Msa0831400:CDS 30.0%
! GATAATGACCTTATTTAGTG+AGG + chr5_4:4403322-4403341 None:intergenic 30.0%
TATTTCAGTGACAAACTGAA+TGG + chr5_4:4403364-4403383 None:intergenic 30.0%
CATTTACAAAATGTGTGAAC+TGG + chr5_4:4403450-4403469 None:intergenic 30.0%
! CAGTTCACACATTTTGTAAA+TGG - chr5_4:4403448-4403467 Msa0831400:intron 30.0%
! ACACATTTTGTAAATGGTCA+GGG - chr5_4:4403454-4403473 Msa0831400:intron 30.0%
! TTTTGTCTAACACTTCTTGT+TGG + chr5_4:4403535-4403554 None:intergenic 30.0%
! ATGAATTTTGCGCTAATAAG+AGG - chr5_4:4403585-4403604 Msa0831400:five_prime_UTR 30.0%
GCAAATTCAATCTATCTCAT+AGG - chr5_4:4401367-4401386 Msa0831400:three_prime_UTR 30.0%
GAGTAAATAACACAAACACA+TGG + chr5_4:4401467-4401486 None:intergenic 30.0%
! GTGTGTTTTTCTGTCAAATT+TGG - chr5_4:4401723-4401742 Msa0831400:CDS 30.0%
!! TAGGAGTTATTCGTTTTTCT+TGG - chr5_4:4401879-4401898 Msa0831400:CDS 30.0%
CATGACATAAAACATAAACG+GGG - chr5_4:4401926-4401945 Msa0831400:CDS 30.0%
!! GGCATTTTAATCAGAGTAAT+AGG + chr5_4:4401968-4401987 None:intergenic 30.0%
CTTTAGTCAAAATGTAACTG+CGG - chr5_4:4401993-4402012 Msa0831400:CDS 30.0%
GTTATCGAGTATTATTAAGG+GGG - chr5_4:4402240-4402259 Msa0831400:intron 30.0%
AAACCACAAATTCGAAGTAA+TGG - chr5_4:4402410-4402429 Msa0831400:CDS 30.0%
ATACCATTACTTCGAATTTG+TGG + chr5_4:4402416-4402435 None:intergenic 30.0%
CTTTCATGAATTGTTCAAGT+AGG + chr5_4:4402740-4402759 None:intergenic 30.0%
TGAAAGATAAAGTGAATGAC+AGG - chr5_4:4402754-4402773 Msa0831400:intron 30.0%
GTTAATGCCCTCAATAAATA+TGG - chr5_4:4402945-4402964 Msa0831400:intron 30.0%
TGGTATTCTTTATTGTCACA+TGG - chr5_4:4402965-4402984 Msa0831400:intron 30.0%
TATTCTTTATTGTCACATGG+TGG - chr5_4:4402968-4402987 Msa0831400:intron 30.0%
TCCTCTAAACAAGTATAACA+GGG - chr5_4:4403202-4403221 Msa0831400:CDS 30.0%
GGTTACTTCATTCAAGAAAA+GGG + chr5_4:4403271-4403290 None:intergenic 30.0%
! CTTTTCTTGAATGAAGTAAC+CGG - chr5_4:4403270-4403289 Msa0831400:CDS 30.0%
! GATAATGACCTTATTTAGTG+AGG + chr5_4:4403322-4403341 None:intergenic 30.0%
TATTTCAGTGACAAACTGAA+TGG + chr5_4:4403364-4403383 None:intergenic 30.0%
CATTTACAAAATGTGTGAAC+TGG + chr5_4:4403450-4403469 None:intergenic 30.0%
! CAGTTCACACATTTTGTAAA+TGG - chr5_4:4403448-4403467 Msa0831400:intron 30.0%
! ACACATTTTGTAAATGGTCA+GGG - chr5_4:4403454-4403473 Msa0831400:intron 30.0%
! TTTTGTCTAACACTTCTTGT+TGG + chr5_4:4403535-4403554 None:intergenic 30.0%
! ATGAATTTTGCGCTAATAAG+AGG - chr5_4:4403585-4403604 Msa0831400:five_prime_UTR 30.0%
TAAGGAGTAAGAAGTGGAAT+GGG + chr5_4:4401339-4401358 None:intergenic 35.0%
ATCTTGTAAGGAGTAAGAAG+TGG + chr5_4:4401345-4401364 None:intergenic 35.0%
ACTTCTTACTCCTTACAAGA+TGG - chr5_4:4401344-4401363 Msa0831400:three_prime_UTR 35.0%
CTTCTTACTCCTTACAAGAT+GGG - chr5_4:4401345-4401364 Msa0831400:three_prime_UTR 35.0%
TTGAATTTGCCCATCTTGTA+AGG + chr5_4:4401357-4401376 None:intergenic 35.0%
TCATGAACAGCATCTACAAT+AGG + chr5_4:4401695-4401714 None:intergenic 35.0%
TTCTGTCAAATTTGGCATGT+TGG - chr5_4:4401731-4401750 Msa0831400:CDS 35.0%
ACCTCAAATCAATACTTGTG+TGG + chr5_4:4401830-4401849 None:intergenic 35.0%
!! ATTGATTTGAGGTTTCCTTG+TGG - chr5_4:4401837-4401856 Msa0831400:CDS 35.0%
ACTGAGTGAATTATGTGACT+AGG - chr5_4:4401860-4401879 Msa0831400:CDS 35.0%
AATGTAACTGCGGAAAGAAT+TGG - chr5_4:4402003-4402022 Msa0831400:CDS 35.0%
!! ATGATATGTTCTAGGACAGT+AGG - chr5_4:4402055-4402074 Msa0831400:CDS 35.0%
! CATTCAGTTTTCCTCACTTA+AGG + chr5_4:4402093-4402112 None:intergenic 35.0%
ATTCTCAACAGTTTATCAGC+CGG - chr5_4:4402349-4402368 Msa0831400:intron 35.0%
!!! CTTCGAATTTGTGGTTTTAG+TGG + chr5_4:4402407-4402426 None:intergenic 35.0%
CTGAAGTCATTGACAATGTT+CGG + chr5_4:4402488-4402507 None:intergenic 35.0%
!! TTGTTACTTTAGATGGCACT+AGG - chr5_4:4402632-4402651 Msa0831400:intron 35.0%
TGCAAATTGCAGGATTTGAT+GGG - chr5_4:4402688-4402707 Msa0831400:intron 35.0%
GAACCAAGAATGATAACTGT+TGG - chr5_4:4402990-4403009 Msa0831400:intron 35.0%
TCACCAACAGTTATCATTCT+TGG + chr5_4:4402996-4403015 None:intergenic 35.0%
ACAAACGACCATATACAACT+AGG + chr5_4:4403139-4403158 None:intergenic 35.0%
CTCCTCTAAACAAGTATAAC+AGG - chr5_4:4403201-4403220 Msa0831400:CDS 35.0%
TCCCTGTTATACTTGTTTAG+AGG + chr5_4:4403206-4403225 None:intergenic 35.0%
TAGTCAGTATAACCTAGAAC+TGG + chr5_4:4403248-4403267 None:intergenic 35.0%
CGGTTACTTCATTCAAGAAA+AGG + chr5_4:4403272-4403291 None:intergenic 35.0%
TGGAATCTCCTCACTAAATA+AGG - chr5_4:4403311-4403330 Msa0831400:CDS 35.0%
TGGCATAAAGCAATTTGCAA+GGG + chr5_4:4403344-4403363 None:intergenic 35.0%
ATGGCATAAAGCAATTTGCA+AGG + chr5_4:4403345-4403364 None:intergenic 35.0%
! CACACATTTTGTAAATGGTC+AGG - chr5_4:4403453-4403472 Msa0831400:intron 35.0%
TAAGGAGTAAGAAGTGGAAT+GGG + chr5_4:4401339-4401358 None:intergenic 35.0%
ATCTTGTAAGGAGTAAGAAG+TGG + chr5_4:4401345-4401364 None:intergenic 35.0%
ACTTCTTACTCCTTACAAGA+TGG - chr5_4:4401344-4401363 Msa0831400:three_prime_UTR 35.0%
CTTCTTACTCCTTACAAGAT+GGG - chr5_4:4401345-4401364 Msa0831400:three_prime_UTR 35.0%
TTGAATTTGCCCATCTTGTA+AGG + chr5_4:4401357-4401376 None:intergenic 35.0%
TCATGAACAGCATCTACAAT+AGG + chr5_4:4401695-4401714 None:intergenic 35.0%
TTCTGTCAAATTTGGCATGT+TGG - chr5_4:4401731-4401750 Msa0831400:CDS 35.0%
ACCTCAAATCAATACTTGTG+TGG + chr5_4:4401830-4401849 None:intergenic 35.0%
!! ATTGATTTGAGGTTTCCTTG+TGG - chr5_4:4401837-4401856 Msa0831400:CDS 35.0%
ACTGAGTGAATTATGTGACT+AGG - chr5_4:4401860-4401879 Msa0831400:CDS 35.0%
AATGTAACTGCGGAAAGAAT+TGG - chr5_4:4402003-4402022 Msa0831400:CDS 35.0%
!! ATGATATGTTCTAGGACAGT+AGG - chr5_4:4402055-4402074 Msa0831400:CDS 35.0%
! CATTCAGTTTTCCTCACTTA+AGG + chr5_4:4402093-4402112 None:intergenic 35.0%
ATTCTCAACAGTTTATCAGC+CGG - chr5_4:4402349-4402368 Msa0831400:intron 35.0%
!!! CTTCGAATTTGTGGTTTTAG+TGG + chr5_4:4402407-4402426 None:intergenic 35.0%
CTGAAGTCATTGACAATGTT+CGG + chr5_4:4402488-4402507 None:intergenic 35.0%
!! TTGTTACTTTAGATGGCACT+AGG - chr5_4:4402632-4402651 Msa0831400:intron 35.0%
TGCAAATTGCAGGATTTGAT+GGG - chr5_4:4402688-4402707 Msa0831400:intron 35.0%
GAACCAAGAATGATAACTGT+TGG - chr5_4:4402990-4403009 Msa0831400:intron 35.0%
TCACCAACAGTTATCATTCT+TGG + chr5_4:4402996-4403015 None:intergenic 35.0%
ACAAACGACCATATACAACT+AGG + chr5_4:4403139-4403158 None:intergenic 35.0%
CTCCTCTAAACAAGTATAAC+AGG - chr5_4:4403201-4403220 Msa0831400:CDS 35.0%
TCCCTGTTATACTTGTTTAG+AGG + chr5_4:4403206-4403225 None:intergenic 35.0%
TAGTCAGTATAACCTAGAAC+TGG + chr5_4:4403248-4403267 None:intergenic 35.0%
CGGTTACTTCATTCAAGAAA+AGG + chr5_4:4403272-4403291 None:intergenic 35.0%
TGGAATCTCCTCACTAAATA+AGG - chr5_4:4403311-4403330 Msa0831400:CDS 35.0%
TGGCATAAAGCAATTTGCAA+GGG + chr5_4:4403344-4403363 None:intergenic 35.0%
ATGGCATAAAGCAATTTGCA+AGG + chr5_4:4403345-4403364 None:intergenic 35.0%
! CACACATTTTGTAAATGGTC+AGG - chr5_4:4403453-4403472 Msa0831400:intron 35.0%
TTCAACCTCAACTTCAGTAC+AGG - chr5_4:4401287-4401306 Msa0831400:three_prime_UTR 40.0%
CATTTCCTGTACTGAAGTTG+AGG + chr5_4:4401295-4401314 None:intergenic 40.0%
CTCAACTTCAGTACAGGAAA+TGG - chr5_4:4401293-4401312 Msa0831400:three_prime_UTR 40.0%
GTAAGGAGTAAGAAGTGGAA+TGG + chr5_4:4401340-4401359 None:intergenic 40.0%
TAGGATCTTTGTCTTGTGAG+TGG + chr5_4:4401515-4401534 None:intergenic 40.0%
CTCACAAGACAAAGATCCTA+CGG - chr5_4:4401515-4401534 Msa0831400:three_prime_UTR 40.0%
GAGTAATAGAGGATAGCATG+AGG + chr5_4:4401554-4401573 None:intergenic 40.0%
TATGAGAAGACCACCTTTAG+AGG + chr5_4:4401585-4401604 None:intergenic 40.0%
TGCTCTTTAGTCCATATACC+CGG + chr5_4:4401656-4401675 None:intergenic 40.0%
GTAGATGCTGTTCATGACAA+AGG - chr5_4:4401698-4401717 Msa0831400:CDS 40.0%
!! GCCACACAAGTATTGATTTG+AGG - chr5_4:4401826-4401845 Msa0831400:CDS 40.0%
CATAATTCACTCAGTCCACA+AGG + chr5_4:4401855-4401874 None:intergenic 40.0%
CACACATGTTACCTTAAGTG+AGG - chr5_4:4402079-4402098 Msa0831400:CDS 40.0%
TTGCAAAATTCACACCACCA+AGG - chr5_4:4402441-4402460 Msa0831400:CDS 40.0%
GCAAGAAATGCTATTGAAGC+TGG - chr5_4:4402515-4402534 Msa0831400:intron 40.0%
GTGCAAATTGCAGGATTTGA+TGG - chr5_4:4402687-4402706 Msa0831400:intron 40.0%
GCAAATTGCAGGATTTGATG+GGG - chr5_4:4402689-4402708 Msa0831400:intron 40.0%
TTTGATGGGGTTGAAATCCA+TGG - chr5_4:4402702-4402721 Msa0831400:intron 40.0%
AATGACAGGACAGATGAGTA+TGG - chr5_4:4402768-4402787 Msa0831400:intron 40.0%
GAAGCTGTTGCAAATGAGAT+AGG - chr5_4:4402834-4402853 Msa0831400:intron 40.0%
GAGATAGGAACAGAAAGAGT+TGG - chr5_4:4402849-4402868 Msa0831400:intron 40.0%
CATTCTGCATACTCTGCAAA+AGG + chr5_4:4402888-4402907 None:intergenic 40.0%
TTTGCAGAGTATGCAGAATG+TGG - chr5_4:4402888-4402907 Msa0831400:intron 40.0%
AGACTCCAACCCTAAAGAAT+TGG - chr5_4:4402911-4402930 Msa0831400:intron 40.0%
GACTCCAACCCTAAAGAATT+GGG - chr5_4:4402912-4402931 Msa0831400:intron 40.0%
!! AAGTCCCAATTCTTTAGGGT+TGG + chr5_4:4402919-4402938 None:intergenic 40.0%
!! AACCATGAAAGTGCCTTTGA+AGG + chr5_4:4403060-4403079 None:intergenic 40.0%
GAGGTTACGATCGAAATGAT+GGG - chr5_4:4403084-4403103 Msa0831400:intron 40.0%
GCAAATCTCTTTGGCAAATC+TGG + chr5_4:4403173-4403192 None:intergenic 40.0%
GCATCAAGTGCAAATCTCTT+TGG + chr5_4:4403182-4403201 None:intergenic 40.0%
GTATAACCTAGAACTGGATC+AGG + chr5_4:4403242-4403261 None:intergenic 40.0%
GCTTACTCTTGCTAATGCTT+TGG - chr5_4:4403422-4403441 Msa0831400:intron 40.0%
TTCAACCTCAACTTCAGTAC+AGG - chr5_4:4401287-4401306 Msa0831400:three_prime_UTR 40.0%
CATTTCCTGTACTGAAGTTG+AGG + chr5_4:4401295-4401314 None:intergenic 40.0%
CTCAACTTCAGTACAGGAAA+TGG - chr5_4:4401293-4401312 Msa0831400:three_prime_UTR 40.0%
GTAAGGAGTAAGAAGTGGAA+TGG + chr5_4:4401340-4401359 None:intergenic 40.0%
TAGGATCTTTGTCTTGTGAG+TGG + chr5_4:4401515-4401534 None:intergenic 40.0%
CTCACAAGACAAAGATCCTA+CGG - chr5_4:4401515-4401534 Msa0831400:three_prime_UTR 40.0%
GAGTAATAGAGGATAGCATG+AGG + chr5_4:4401554-4401573 None:intergenic 40.0%
TATGAGAAGACCACCTTTAG+AGG + chr5_4:4401585-4401604 None:intergenic 40.0%
TGCTCTTTAGTCCATATACC+CGG + chr5_4:4401656-4401675 None:intergenic 40.0%
GTAGATGCTGTTCATGACAA+AGG - chr5_4:4401698-4401717 Msa0831400:CDS 40.0%
!! GCCACACAAGTATTGATTTG+AGG - chr5_4:4401826-4401845 Msa0831400:CDS 40.0%
CATAATTCACTCAGTCCACA+AGG + chr5_4:4401855-4401874 None:intergenic 40.0%
CACACATGTTACCTTAAGTG+AGG - chr5_4:4402079-4402098 Msa0831400:CDS 40.0%
TTGCAAAATTCACACCACCA+AGG - chr5_4:4402441-4402460 Msa0831400:CDS 40.0%
GCAAGAAATGCTATTGAAGC+TGG - chr5_4:4402515-4402534 Msa0831400:intron 40.0%
GTGCAAATTGCAGGATTTGA+TGG - chr5_4:4402687-4402706 Msa0831400:intron 40.0%
GCAAATTGCAGGATTTGATG+GGG - chr5_4:4402689-4402708 Msa0831400:intron 40.0%
TTTGATGGGGTTGAAATCCA+TGG - chr5_4:4402702-4402721 Msa0831400:intron 40.0%
AATGACAGGACAGATGAGTA+TGG - chr5_4:4402768-4402787 Msa0831400:intron 40.0%
GAAGCTGTTGCAAATGAGAT+AGG - chr5_4:4402834-4402853 Msa0831400:intron 40.0%
GAGATAGGAACAGAAAGAGT+TGG - chr5_4:4402849-4402868 Msa0831400:intron 40.0%
CATTCTGCATACTCTGCAAA+AGG + chr5_4:4402888-4402907 None:intergenic 40.0%
TTTGCAGAGTATGCAGAATG+TGG - chr5_4:4402888-4402907 Msa0831400:intron 40.0%
AGACTCCAACCCTAAAGAAT+TGG - chr5_4:4402911-4402930 Msa0831400:intron 40.0%
GACTCCAACCCTAAAGAATT+GGG - chr5_4:4402912-4402931 Msa0831400:intron 40.0%
!! AAGTCCCAATTCTTTAGGGT+TGG + chr5_4:4402919-4402938 None:intergenic 40.0%
!! AACCATGAAAGTGCCTTTGA+AGG + chr5_4:4403060-4403079 None:intergenic 40.0%
GAGGTTACGATCGAAATGAT+GGG - chr5_4:4403084-4403103 Msa0831400:intron 40.0%
GCAAATCTCTTTGGCAAATC+TGG + chr5_4:4403173-4403192 None:intergenic 40.0%
GCATCAAGTGCAAATCTCTT+TGG + chr5_4:4403182-4403201 None:intergenic 40.0%
GTATAACCTAGAACTGGATC+AGG + chr5_4:4403242-4403261 None:intergenic 40.0%
GCTTACTCTTGCTAATGCTT+TGG - chr5_4:4403422-4403441 Msa0831400:intron 40.0%
ACTTCAGTACAGGAAATGGC+TGG - chr5_4:4401297-4401316 Msa0831400:three_prime_UTR 45.0%
TAGAGGATAGCATGAGGTTG+TGG + chr5_4:4401548-4401567 None:intergenic 45.0%
! AGGCTCTCTGAGAGTAATAG+AGG + chr5_4:4401565-4401584 None:intergenic 45.0%
TACTCTCAGAGAGCCTCTAA+AGG - chr5_4:4401569-4401588 Msa0831400:three_prime_UTR 45.0%
! ATGGACTAAAGAGCACGTTG+AGG - chr5_4:4401661-4401680 Msa0831400:CDS 45.0%
GATGCTGTTCATGACAAAGG+CGG - chr5_4:4401701-4401720 Msa0831400:CDS 45.0%
GTTGGAAGAGTTTCTGATGC+TGG - chr5_4:4401749-4401768 Msa0831400:CDS 45.0%
!! CTCGCGGTACTTTTGTTTAC+TGG + chr5_4:4401804-4401823 None:intergenic 45.0%
AATACTTGTGTGGCAACTCG+CGG + chr5_4:4401820-4401839 None:intergenic 45.0%
TCAACAGTTTATCAGCCGGA+TGG - chr5_4:4402353-4402372 Msa0831400:intron 45.0%
CAACAGTTTATCAGCCGGAT+GGG - chr5_4:4402354-4402373 Msa0831400:CDS 45.0%
GGCTTGTCTGTGGAAGATAT+TGG + chr5_4:4402386-4402405 None:intergenic 45.0%
!!! TGGTTTTAGTGGCTTGTCTG+TGG + chr5_4:4402396-4402415 None:intergenic 45.0%
CAAAATTCACACCACCAAGG+CGG - chr5_4:4402444-4402463 Msa0831400:CDS 45.0%
GTTGAAATCCATGGAGCTCA+TGG - chr5_4:4402711-4402730 Msa0831400:intron 45.0%
AAACCGACAACGGTTCTCAA+GGG + chr5_4:4402799-4402818 None:intergenic 45.0%
CTTCCAAAGCAAACCGACAA+CGG + chr5_4:4402809-4402828 None:intergenic 45.0%
! CCTTTGAAGGCCTTTCTCAT+TGG + chr5_4:4403047-4403066 None:intergenic 45.0%
CCAATGAGAAAGGCCTTCAA+AGG - chr5_4:4403044-4403063 Msa0831400:intron 45.0%
!! AAAGGCACTTTCATGGTTGC+AGG - chr5_4:4403062-4403081 Msa0831400:intron 45.0%
GGAGGTTACGATCGAAATGA+TGG - chr5_4:4403083-4403102 Msa0831400:intron 45.0%
TCAACGCCATAGCTGAAAAC+AGG - chr5_4:4403108-4403127 Msa0831400:intron 45.0%
CAACGCCATAGCTGAAAACA+GGG - chr5_4:4403109-4403128 Msa0831400:intron 45.0%
AGGGCAGACCTAGTTGTATA+TGG - chr5_4:4403128-4403147 Msa0831400:intron 45.0%
TACGTTCCTGATCCAGTTCT+AGG - chr5_4:4403233-4403252 Msa0831400:CDS 45.0%
TAGTGAGGAGATTCCACACT+TGG + chr5_4:4403307-4403326 None:intergenic 45.0%
ACTTCAGTACAGGAAATGGC+TGG - chr5_4:4401297-4401316 Msa0831400:three_prime_UTR 45.0%
TAGAGGATAGCATGAGGTTG+TGG + chr5_4:4401548-4401567 None:intergenic 45.0%
! AGGCTCTCTGAGAGTAATAG+AGG + chr5_4:4401565-4401584 None:intergenic 45.0%
TACTCTCAGAGAGCCTCTAA+AGG - chr5_4:4401569-4401588 Msa0831400:three_prime_UTR 45.0%
! ATGGACTAAAGAGCACGTTG+AGG - chr5_4:4401661-4401680 Msa0831400:CDS 45.0%
GATGCTGTTCATGACAAAGG+CGG - chr5_4:4401701-4401720 Msa0831400:CDS 45.0%
GTTGGAAGAGTTTCTGATGC+TGG - chr5_4:4401749-4401768 Msa0831400:CDS 45.0%
!! CTCGCGGTACTTTTGTTTAC+TGG + chr5_4:4401804-4401823 None:intergenic 45.0%
AATACTTGTGTGGCAACTCG+CGG + chr5_4:4401820-4401839 None:intergenic 45.0%
TCAACAGTTTATCAGCCGGA+TGG - chr5_4:4402353-4402372 Msa0831400:intron 45.0%
CAACAGTTTATCAGCCGGAT+GGG - chr5_4:4402354-4402373 Msa0831400:CDS 45.0%
GGCTTGTCTGTGGAAGATAT+TGG + chr5_4:4402386-4402405 None:intergenic 45.0%
!!! TGGTTTTAGTGGCTTGTCTG+TGG + chr5_4:4402396-4402415 None:intergenic 45.0%
CAAAATTCACACCACCAAGG+CGG - chr5_4:4402444-4402463 Msa0831400:CDS 45.0%
GTTGAAATCCATGGAGCTCA+TGG - chr5_4:4402711-4402730 Msa0831400:intron 45.0%
AAACCGACAACGGTTCTCAA+GGG + chr5_4:4402799-4402818 None:intergenic 45.0%
CTTCCAAAGCAAACCGACAA+CGG + chr5_4:4402809-4402828 None:intergenic 45.0%
! CCTTTGAAGGCCTTTCTCAT+TGG + chr5_4:4403047-4403066 None:intergenic 45.0%
CCAATGAGAAAGGCCTTCAA+AGG - chr5_4:4403044-4403063 Msa0831400:intron 45.0%
!! AAAGGCACTTTCATGGTTGC+AGG - chr5_4:4403062-4403081 Msa0831400:intron 45.0%
GGAGGTTACGATCGAAATGA+TGG - chr5_4:4403083-4403102 Msa0831400:intron 45.0%
TCAACGCCATAGCTGAAAAC+AGG - chr5_4:4403108-4403127 Msa0831400:intron 45.0%
CAACGCCATAGCTGAAAACA+GGG - chr5_4:4403109-4403128 Msa0831400:intron 45.0%
AGGGCAGACCTAGTTGTATA+TGG - chr5_4:4403128-4403147 Msa0831400:intron 45.0%
TACGTTCCTGATCCAGTTCT+AGG - chr5_4:4403233-4403252 Msa0831400:CDS 45.0%
TAGTGAGGAGATTCCACACT+TGG + chr5_4:4403307-4403326 None:intergenic 45.0%
AGGTTGTGGAACATTGCCGT+AGG + chr5_4:4401534-4401553 None:intergenic 50.0%
! TCTCAGAGAGCCTCTAAAGG+TGG - chr5_4:4401572-4401591 Msa0831400:three_prime_UTR 50.0%
CTTCTCATAGCCGAAGCTAC+CGG - chr5_4:4401596-4401615 Msa0831400:exon 50.0%
TTGAGCAGTGTCAGAGACAC+CGG + chr5_4:4401618-4401637 None:intergenic 50.0%
TCAAGGCTATCCAAACACGC+CGG - chr5_4:4401634-4401653 Msa0831400:CDS 50.0%
ATCCAAACACGCCGGGTATA+TGG - chr5_4:4401642-4401661 Msa0831400:CDS 50.0%
! CTAAAGAGCACGTTGAGGCT+TGG - chr5_4:4401666-4401685 Msa0831400:CDS 50.0%
! GATATTGGTGCTTGCCCATC+CGG + chr5_4:4402371-4402390 None:intergenic 50.0%
CTTAGTGGGGTGCAAATTGC+AGG - chr5_4:4402678-4402697 Msa0831400:intron 50.0%
GACAGGACAGATGAGTATGG+TGG - chr5_4:4402771-4402790 Msa0831400:intron 50.0%
GATCCCTTGAGAACCGTTGT+CGG - chr5_4:4402793-4402812 Msa0831400:intron 50.0%
CAAACCGACAACGGTTCTCA+AGG + chr5_4:4402800-4402819 None:intergenic 50.0%
!! GAACCGTTGTCGGTTTGCTT+TGG - chr5_4:4402803-4402822 Msa0831400:intron 50.0%
TCTCATTGGCACAAGGCTGT+CGG + chr5_4:4403033-4403052 None:intergenic 50.0%
! CAGCCTTGTGCCAATGAGAA+AGG - chr5_4:4403034-4403053 Msa0831400:intron 50.0%
AGGCCTTTCTCATTGGCACA+AGG + chr5_4:4403040-4403059 None:intergenic 50.0%
!! GGCCTTCAAAGGCACTTTCA+TGG - chr5_4:4403055-4403074 Msa0831400:intron 50.0%
! GTCTGCCCTGTTTTCAGCTA+TGG + chr5_4:4403117-4403136 None:intergenic 50.0%
ACACTTGGATGCTACAGCAC+CGG + chr5_4:4403292-4403311 None:intergenic 50.0%
AGGTTGTGGAACATTGCCGT+AGG + chr5_4:4401534-4401553 None:intergenic 50.0%
! TCTCAGAGAGCCTCTAAAGG+TGG - chr5_4:4401572-4401591 Msa0831400:three_prime_UTR 50.0%
CTTCTCATAGCCGAAGCTAC+CGG - chr5_4:4401596-4401615 Msa0831400:exon 50.0%
TTGAGCAGTGTCAGAGACAC+CGG + chr5_4:4401618-4401637 None:intergenic 50.0%
TCAAGGCTATCCAAACACGC+CGG - chr5_4:4401634-4401653 Msa0831400:CDS 50.0%
ATCCAAACACGCCGGGTATA+TGG - chr5_4:4401642-4401661 Msa0831400:CDS 50.0%
! CTAAAGAGCACGTTGAGGCT+TGG - chr5_4:4401666-4401685 Msa0831400:CDS 50.0%
! GATATTGGTGCTTGCCCATC+CGG + chr5_4:4402371-4402390 None:intergenic 50.0%
CTTAGTGGGGTGCAAATTGC+AGG - chr5_4:4402678-4402697 Msa0831400:intron 50.0%
GACAGGACAGATGAGTATGG+TGG - chr5_4:4402771-4402790 Msa0831400:intron 50.0%
GATCCCTTGAGAACCGTTGT+CGG - chr5_4:4402793-4402812 Msa0831400:intron 50.0%
CAAACCGACAACGGTTCTCA+AGG + chr5_4:4402800-4402819 None:intergenic 50.0%
!! GAACCGTTGTCGGTTTGCTT+TGG - chr5_4:4402803-4402822 Msa0831400:intron 50.0%
TCTCATTGGCACAAGGCTGT+CGG + chr5_4:4403033-4403052 None:intergenic 50.0%
! CAGCCTTGTGCCAATGAGAA+AGG - chr5_4:4403034-4403053 Msa0831400:intron 50.0%
AGGCCTTTCTCATTGGCACA+AGG + chr5_4:4403040-4403059 None:intergenic 50.0%
!! GGCCTTCAAAGGCACTTTCA+TGG - chr5_4:4403055-4403074 Msa0831400:intron 50.0%
! GTCTGCCCTGTTTTCAGCTA+TGG + chr5_4:4403117-4403136 None:intergenic 50.0%
ACACTTGGATGCTACAGCAC+CGG + chr5_4:4403292-4403311 None:intergenic 50.0%
GTCAGAGACACCGGTAGCTT+CGG + chr5_4:4401609-4401628 None:intergenic 55.0%
GGTGTCTCTGACACTGCTCA+AGG - chr5_4:4401617-4401636 Msa0831400:CDS 55.0%
CAAGGCTATCCAAACACGCC+GGG - chr5_4:4401635-4401654 Msa0831400:CDS 55.0%
GTCCATATACCCGGCGTGTT+TGG + chr5_4:4401647-4401666 None:intergenic 55.0%
TCATCTGTCCTTAGCCGCCT+TGG + chr5_4:4402461-4402480 None:intergenic 55.0%
GTAGGTAGCCATGAGCTCCA+TGG + chr5_4:4402722-4402741 None:intergenic 55.0%
TCATTGGCACAAGGCTGTCG+GGG + chr5_4:4403031-4403050 None:intergenic 55.0%
CTCATTGGCACAAGGCTGTC+GGG + chr5_4:4403032-4403051 None:intergenic 55.0%
GGCACTTTCATGGTTGCAGG+AGG - chr5_4:4403065-4403084 Msa0831400:intron 55.0%
! GGTGCTGTAGCATCCAAGTG+TGG - chr5_4:4403291-4403310 Msa0831400:CDS 55.0%
GTCAGAGACACCGGTAGCTT+CGG + chr5_4:4401609-4401628 None:intergenic 55.0%
GGTGTCTCTGACACTGCTCA+AGG - chr5_4:4401617-4401636 Msa0831400:CDS 55.0%
CAAGGCTATCCAAACACGCC+GGG - chr5_4:4401635-4401654 Msa0831400:CDS 55.0%
GTCCATATACCCGGCGTGTT+TGG + chr5_4:4401647-4401666 None:intergenic 55.0%
TCATCTGTCCTTAGCCGCCT+TGG + chr5_4:4402461-4402480 None:intergenic 55.0%
GTAGGTAGCCATGAGCTCCA+TGG + chr5_4:4402722-4402741 None:intergenic 55.0%
TCATTGGCACAAGGCTGTCG+GGG + chr5_4:4403031-4403050 None:intergenic 55.0%
CTCATTGGCACAAGGCTGTC+GGG + chr5_4:4403032-4403051 None:intergenic 55.0%
GGCACTTTCATGGTTGCAGG+AGG - chr5_4:4403065-4403084 Msa0831400:intron 55.0%
! GGTGCTGTAGCATCCAAGTG+TGG - chr5_4:4403291-4403310 Msa0831400:CDS 55.0%
TCACACCACCAAGGCGGCTA+AGG - chr5_4:4402450-4402469 Msa0831400:CDS 60.0%
TCTGTCCTTAGCCGCCTTGG+TGG + chr5_4:4402458-4402477 None:intergenic 60.0%
TCACACCACCAAGGCGGCTA+AGG - chr5_4:4402450-4402469 Msa0831400:CDS 60.0%
TCTGTCCTTAGCCGCCTTGG+TGG + chr5_4:4402458-4402477 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 4401257 4403633 4401257 ID=Msa0831400;Name=Msa0831400
chr5_4 mRNA 4401257 4403633 4401257 ID=Msa0831400-mRNA-1;Parent=Msa0831400;Name=Msa0831400-mRNA-1;_AED=0.13;_eAED=0.13;_QI=55|0.66|0.75|1|1|1|4|350|353
chr5_4 exon 4401257 4402190 4401257 ID=Msa0831400-mRNA-1:exon:1819;Parent=Msa0831400-mRNA-1
chr5_4 exon 4402354 4402530 4402354 ID=Msa0831400-mRNA-1:exon:1818;Parent=Msa0831400-mRNA-1
chr5_4 exon 4403168 4403391 4403168 ID=Msa0831400-mRNA-1:exon:1817;Parent=Msa0831400-mRNA-1
chr5_4 exon 4403502 4403633 4403502 ID=Msa0831400-mRNA-1:exon:1816;Parent=Msa0831400-mRNA-1
chr5_4 five_prime_UTR 4403579 4403633 4403579 ID=Msa0831400-mRNA-1:five_prime_utr;Parent=Msa0831400-mRNA-1
chr5_4 CDS 4403502 4403578 4403502 ID=Msa0831400-mRNA-1:cds;Parent=Msa0831400-mRNA-1
chr5_4 CDS 4403168 4403391 4403168 ID=Msa0831400-mRNA-1:cds;Parent=Msa0831400-mRNA-1
chr5_4 CDS 4402354 4402530 4402354 ID=Msa0831400-mRNA-1:cds;Parent=Msa0831400-mRNA-1
chr5_4 CDS 4401607 4402190 4401607 ID=Msa0831400-mRNA-1:cds;Parent=Msa0831400-mRNA-1
chr5_4 three_prime_UTR 4401257 4401606 4401257 ID=Msa0831400-mRNA-1:three_prime_utr;Parent=Msa0831400-mRNA-1
Gene Sequence

>Msa0831400

ATGGCTGGTGTTGTTGAATCTGATCCCATTCCACTTCTTACTCCTTACAAGATGGGCAAATTCAATCTATCTCATAGAGTTGTTTTGGCACCACTCACAAGACAAAGATCCTACGGCAATGTTCCACAACCTCATGCTATCCTCTATTACTCTCAGAGAGCCTCTAAAGGTGGTCTTCTCATAGCCGAAGCTACCGGTGTCTCTGACACTGCTCAAGGCTATCCAAACACGCCGGGTATATGGACTAAAGAGCACGTTGAGGCTTGGAAACCTATTGTAGATGCTGTTCATGACAAAGGCGTTTATCAGCCGGATGGGCAAGCACCAATATCTTCCACAGACAAGCCACTAAAACCACAAATTCGAAGTAATGGTATTGATGTTGCAAAATTCACACCACCAAGGCGGCTAAGGACAGATGAAATTCCGAACATTGTCAATGACTTCAGACTCGCTGCAAGAAATGCTATTGAAGCTGGATTTGATGGGGTTGAAATCCATGGAGCTCATGGCTACCTACTTGAACAATTCATGAAAGATAAAGTGAATGACAGGACAGATGAGTATGGTGGATCCCTTGAGAACCGTTGTCGGTTTGCTTTGGAAGTTGTTGAAGCTGTTGCAAATGAGATAGGAACAGAAAGAGTTGGAATAAGATTATCACCTTTTGCAGAGTATGCAGAATGTGGAGACTCCAACCCTAAAGAATTGGGACTTTATATGGTTAATGCCCTCAATAAATATGGTATTCTTTATTGTCACATGGTGGAACCAAGAATGATAACTGTTGGTGAAAAAACTGAATGCCCCGACAGCCTTGTGCCAATGAGAAAGGCCTTCAAAGGCACTTTCATGGTTGCAGGAGGTTACGATCGAAATGATGGGATCAACGCCATAGCTGAAAACAGGGCAGACCTAGTTGTATATGGTCGTTTGTTCTTAGCTAATCCAGATTTGCCAAAGAGATTTGCACTTGATGCTCCTCTAAACAAGTATAACAGGGAGACATTTTACGTTCCTGATCCAGTTCTAGGTTATACTGACTACCCTTTTCTTGAATGA
Protein sequence

>Msa0831400

MAGVVESDPIPLLTPYKMGKFNLSHRVVLAPLTRQRSYGNVPQPHAILYYSQRASKGGLLIAEATGVSDTAQGYPNTPGIWTKEHVEAWKPIVDAVHDKGVYQPDGQAPISSTDKPLKPQIRSNGIDVAKFTPPRRLRTDEIPNIVNDFRLAARNAIEAGFDGVEIHGAHGYLLEQFMKDKVNDRTDEYGGSLENRCRFALEVVEAVANEIGTERVGIRLSPFAEYAECGDSNPKELGLYMVNALNKYGILYCHMVEPRMITVGEKTECPDSLVPMRKAFKGTFMVAGGYDRNDGINAIAENRADLVVYGRLFLANPDLPKRFALDAPLNKYNRETFYVPDPVLGYTDYPFLE*