AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0751780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0751780 MtrunA17_Chr5g0394121 93.734 399 25 0 1 399 1 399 0.0 751
Msa0751780 MtrunA17_Chr3g0098621 64.220 327 113 2 68 391 12 337 1.35e-155 445
Msa0751780 MtrunA17_Chr3g0097941 61.471 340 125 3 55 391 55 391 2.09e-155 446
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0751780 AT5G28237.2 58.883 394 153 3 1 392 1 387 2.89e-162 463
Msa0751780 AT5G28237.1 58.883 394 153 3 1 392 1 387 5.49e-162 463
Msa0751780 AT5G54810.1 58.108 370 135 4 41 391 27 395 1.15e-152 440
Msa0751780 AT4G27070.1 62.813 320 115 2 75 391 82 400 9.87e-152 438

Find 148 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATTGCATGTTGAAATATT+TGG 0.178089 5_2:+5269178 Msa0751780:three_prime_UTR
TTTGGAGTGCACCGTCTTTA+TGG 0.214615 5_2:+5266362 Msa0751780:CDS
TCCTTTGGATACAATTTATA+TGG 0.214819 5_2:-5268926 None:intergenic
GGTAACTCGTGATAAGTTTA+AGG 0.222361 5_2:+5265433 Msa0751780:CDS
GTAATAAATGATTAATATAT+TGG 0.227486 5_2:+5269298 Msa0751780:three_prime_UTR
ACCACTTCTACTGGAAAATT+TGG 0.233335 5_2:+5265551 Msa0751780:CDS
GGAGTTGAAGCTGCTGGTTT+AGG 0.247180 5_2:+5267664 Msa0751780:CDS
CACCGCAGAGTTACGCTCTT+TGG 0.262865 5_2:-5265399 None:intergenic
AAGCACATTACAAGTGTTTC+TGG 0.272299 5_2:-5265596 None:intergenic
TTTACCAAACGACAACATTA+AGG 0.283769 5_2:+5268820 Msa0751780:three_prime_UTR
GGAACAGGTTCAAATGCTTT+AGG 0.299421 5_2:+5267598 Msa0751780:CDS
GAGTTGAAGCTGCTGGTTTA+GGG 0.305218 5_2:+5267665 Msa0751780:CDS
ACTGGAAAATTTGGTAGGTT+TGG 0.314647 5_2:+5265560 Msa0751780:CDS
CTTACAACCACTTCTACAAT+AGG 0.315989 5_2:+5265033 Msa0751780:five_prime_UTR
CCAGTAGAAGTGGTATCTTC+TGG 0.317907 5_2:-5265542 None:intergenic
CACTTTGGCCAAAGGAGAAA+TGG 0.320799 5_2:+5267711 Msa0751780:CDS
GACCACCAAGTATAAATAAA+AGG 0.327114 5_2:+5265202 Msa0751780:five_prime_UTR
TGGTATAATAGTTCATAGTT+AGG 0.352582 5_2:-5264966 None:intergenic
ATGTAGGTTGAAGCTGTAAA+TGG 0.356386 5_2:+5267373 Msa0751780:intron
CGTGAATTTCAGTCGGTGAT+TGG 0.356593 5_2:+5267508 Msa0751780:CDS
TTCTGTGGCTTTCTCAATCA+AGG 0.358837 5_2:-5265507 None:intergenic
TGATTGTCTGTCCATGTCTT+TGG 0.364123 5_2:-5266388 None:intergenic
ATAAACACCCATTTCTCCTT+TGG 0.365617 5_2:-5267719 None:intergenic
TCATCTTGTGAGAGCCAGTA+TGG 0.367051 5_2:-5266224 None:intergenic
GATTGCATGTTGAAATATTT+GGG 0.372639 5_2:+5269179 Msa0751780:three_prime_UTR
GTACGGTTGATGAAGCTCTT+AGG 0.375053 5_2:+5266417 Msa0751780:CDS
TGGAGGCGTGTTAGACTGTT+TGG 0.378804 5_2:-5265171 None:intergenic
GTACGAGAGATTATGCAAAT+TGG 0.385327 5_2:+5268733 Msa0751780:three_prime_UTR
ACCGCAGAGTTACGCTCTTT+GGG 0.385722 5_2:-5265398 None:intergenic
GACACAGATGTGAGATTGAT+TGG 0.387117 5_2:+5267643 Msa0751780:CDS
TACTTGGTGGTCGACGCAAC+TGG 0.389594 5_2:-5265191 None:intergenic
TCGCTGTTGGGTTGGAGACT+TGG 0.396871 5_2:+5267426 Msa0751780:CDS
GACATTATTGTTGCAAGTGT+TGG 0.413780 5_2:+5267577 Msa0751780:CDS
ACAACATAACATACGATAAG+AGG 0.414036 5_2:+5265252 Msa0751780:five_prime_UTR
GTCATTACGGCCACCGGCTC+AGG 0.415832 5_2:+5266297 Msa0751780:CDS
TGCATGCGCAAAACTTGCTT+TGG 0.418487 5_2:+5266344 Msa0751780:CDS
ATCACCATCTTGCAATAAAT+AGG 0.421091 5_2:-5267755 None:intergenic
GTGAATTTCAGTCGGTGATT+GGG 0.424558 5_2:+5267509 Msa0751780:CDS
GGTATAATAGTTCATAGTTA+GGG 0.426437 5_2:-5264965 None:intergenic
AGCCACCTACTTGTTTGAAT+AGG 0.436759 5_2:+5269000 Msa0751780:three_prime_UTR
CTCAACTCTGGACCAACTCC+TGG 0.438434 5_2:-5268529 None:intergenic
TGTTTCAAAGATGCATCATC+AGG 0.443309 5_2:+5267397 Msa0751780:CDS
ACAACCTTAATGTTGTCGTT+TGG 0.444640 5_2:-5268824 None:intergenic
ATTGTTGCAAGTGTTGGAAC+AGG 0.446515 5_2:+5267583 Msa0751780:CDS
GAAAACAGCTACCACTTGTC+AGG 0.455616 5_2:+5267448 Msa0751780:CDS
GGAAAATTTGGTAGGTTTGG+AGG 0.456684 5_2:+5265563 Msa0751780:CDS
ATTGGCTATATTAGATAAGC+TGG 0.461016 5_2:+5268790 Msa0751780:three_prime_UTR
ATGTTGTCGTTTGGTAAAGT+AGG 0.462906 5_2:-5268815 None:intergenic
AGAGAGGATCTAAACCATAC+TGG 0.468188 5_2:+5266210 Msa0751780:CDS
GAACCTCACTCCATTGCAGC+TGG 0.468797 5_2:+5267790 Msa0751780:CDS
CCAGAAGATACCACTTCTAC+TGG 0.470024 5_2:+5265542 Msa0751780:CDS
TGGAAAACATTCTTCCACTT+TGG 0.473305 5_2:+5267696 Msa0751780:CDS
TTATGTCACGTGTAAATTTG+CGG 0.473605 5_2:+5265089 Msa0751780:five_prime_UTR
CTAATTTACATGGCGGAGCT+AGG 0.473645 5_2:-5265141 None:intergenic
GTATATGTAGTGGCTAATTG+AGG 0.478553 5_2:-5265464 None:intergenic
ATCTCCTATTTATTGCAAGA+TGG 0.482125 5_2:+5267751 Msa0751780:CDS
TATTTATTGCAAGATGGTGA+TGG 0.487590 5_2:+5267757 Msa0751780:CDS
GCCACCGGCTCAGGACATCA+TGG 0.487627 5_2:+5266306 Msa0751780:CDS
ACTTTGGCCAAAGGAGAAAT+GGG 0.488098 5_2:+5267712 Msa0751780:CDS
TAAATTGTATCCAAAGGAAA+AGG 0.488617 5_2:+5268931 Msa0751780:three_prime_UTR
CTTCTACTGGAAAATTTGGT+AGG 0.489001 5_2:+5265555 Msa0751780:CDS
GCTGGTTTAGGGTTAGATAG+TGG 0.489960 5_2:+5267676 Msa0751780:CDS
CATTTCTCCTTTGGCCAAAG+TGG 0.494631 5_2:-5267710 None:intergenic
TTACAACCACTTCTACAATA+GGG 0.494819 5_2:+5265034 Msa0751780:five_prime_UTR
CATTCTTCCACTTTGGCCAA+AGG 0.495954 5_2:+5267703 Msa0751780:CDS
ACACTTGCAACAATAATGTC+TGG 0.497623 5_2:-5267574 None:intergenic
TGGTTAAGCACTAATTTACA+TGG 0.506876 5_2:-5265151 None:intergenic
ATTATGCCCTATTGTAGAAG+TGG 0.508895 5_2:-5265040 None:intergenic
GAGCATTACAAAAGCAAGAA+TGG 0.508962 5_2:+5266159 Msa0751780:CDS
TGGCTCTACAATAATTTCTG+TGG 0.515208 5_2:-5265522 None:intergenic
AAGGTTGTTGTAAATTGTAG+TGG 0.521105 5_2:+5268839 Msa0751780:three_prime_UTR
TTGATTGGAGTTGAAGCTGC+TGG 0.521751 5_2:+5267658 Msa0751780:CDS
GAAAATTTGGTAGGTTTGGA+GGG 0.522358 5_2:+5265564 Msa0751780:CDS
AGTTGAGTTTCCTCAGAAAG+TGG 0.523977 5_2:+5268545 Msa0751780:CDS
AAAAGCAAGAATGGTGGGAA+AGG 0.530194 5_2:+5266168 Msa0751780:CDS
AAAGCAAGAATGGTGGGAAA+GGG 0.533130 5_2:+5266169 Msa0751780:CDS
CAAGGGTATTGTGGAAGGCA+AGG 0.533424 5_2:-5265489 None:intergenic
GGAGAAATGGGTGTTTATCA+TGG 0.535396 5_2:+5267724 Msa0751780:CDS
ACAAGTGATTGTAACTTGAA+TGG 0.535469 5_2:-5264986 None:intergenic
CGAGAGATTATGCAAATTGG+AGG 0.535793 5_2:+5268736 Msa0751780:three_prime_UTR
CTCTGCACGCCCACTTTCTG+AGG 0.539770 5_2:-5268555 None:intergenic
AAAAGTGTCATTACGGCCAC+CGG 0.545216 5_2:+5266291 Msa0751780:CDS
TCCATATAAATTGTATCCAA+AGG 0.547106 5_2:+5268925 Msa0751780:three_prime_UTR
CACTTGTCAGGTTCAGCGGT+GGG 0.551258 5_2:+5267460 Msa0751780:CDS
TGATTCCAAAGTACAAACTC+AGG 0.551285 5_2:-5269027 None:intergenic
CTTTATGGCTGCCAAAGACA+TGG 0.556703 5_2:+5266377 Msa0751780:CDS
CTGTGTCTGATAGAAACTCA+TGG 0.558634 5_2:-5267627 None:intergenic
CCACCGGCTCAGGACATCAT+GGG 0.558934 5_2:+5266307 Msa0751780:CDS
TCTGTGGCTTTCTCAATCAA+GGG 0.563729 5_2:-5265506 None:intergenic
TTTCTCAATCAAGGGTATTG+TGG 0.563983 5_2:-5265498 None:intergenic
TCTAGAGGCAGCACATGCAT+TGG 0.564224 5_2:+5268772 Msa0751780:three_prime_UTR
TATATGTAGTGGCTAATTGA+GGG 0.565294 5_2:-5265463 None:intergenic
GCATGTGCTGCCTCTAGAGA+TGG 0.565495 5_2:-5268767 None:intergenic
TCAATCAAGGGTATTGTGGA+AGG 0.569510 5_2:-5265494 None:intergenic
GATGAAGCTCTTAGGAGCTA+AGG 0.571020 5_2:+5266425 Msa0751780:CDS
TTTCTGAGGAAACTCAACTC+TGG 0.574131 5_2:-5268541 None:intergenic
AACCTCACTCCATTGCAGCT+GGG 0.576151 5_2:+5267791 Msa0751780:CDS
CTCTGCGGTGGTTCAAGCAG+TGG 0.576203 5_2:+5265412 Msa0751780:CDS
CCCATGATGTCCTGAGCCGG+TGG 0.579348 5_2:-5266307 None:intergenic
CGGTGATTGGGAAAGAAACA+AGG 0.584635 5_2:+5267521 Msa0751780:CDS
AGGATGGAGTACCCAGGAGT+TGG 0.585909 5_2:+5268517 Msa0751780:intron
AAGAAACAAGGAAACAAGCA+TGG 0.587611 5_2:+5267533 Msa0751780:CDS
AAGGGTATTGTGGAAGGCAA+GGG 0.587691 5_2:-5265488 None:intergenic
TGAAATTCACGTACCATGGT+AGG 0.591953 5_2:-5267496 None:intergenic
CCACTTGTCAGGTTCAGCGG+TGG 0.592505 5_2:+5267459 Msa0751780:CDS
GCTATGATTGCCAAGCGCAT+CGG 0.597909 5_2:+5266264 Msa0751780:CDS
GTTGAGTTTCCTCAGAAAGT+GGG 0.599492 5_2:+5268546 Msa0751780:CDS
ATTACAAAAGCAAGAATGGT+GGG 0.599564 5_2:+5266163 Msa0751780:CDS
TGTGACTTACCCAGCTGCAA+TGG 0.601635 5_2:-5267800 None:intergenic
ACCATCGAGAGCTTCTTCAT+CGG 0.602161 5_2:-5268591 None:intergenic
CTACCACTTGTCAGGTTCAG+CGG 0.602899 5_2:+5267456 Msa0751780:CDS
GTTTCAAAGATGCATCATCA+GGG 0.607514 5_2:+5267398 Msa0751780:CDS
AAGCCCATGATGTCCTGAGC+CGG 0.607685 5_2:-5266310 None:intergenic
TCAACTCTGGACCAACTCCT+GGG 0.607704 5_2:-5268528 None:intergenic
GATTCCAAAGTACAAACTCA+GGG 0.610136 5_2:-5269026 None:intergenic
CACCACTGTATCATGCTCAA+AGG 0.613763 5_2:+5266130 Msa0751780:CDS
ACAGCATTAAGAGACTATGT+TGG 0.614566 5_2:+5266099 Msa0751780:CDS
ACAGACAATCATCTAATGTA+CGG 0.615143 5_2:+5266400 Msa0751780:CDS
CGACTGAAATTCACGTACCA+TGG 0.615376 5_2:-5267500 None:intergenic
GTCTTTGGCAGCCATAAAGA+CGG 0.627383 5_2:-5266373 None:intergenic
TGTACCTTGCAATTTACATG+CGG 0.629082 5_2:-5265339 None:intergenic
TACCCAGCTGCAATGGAGTG+AGG 0.630521 5_2:-5267793 None:intergenic
AGGCAAGGGTGTATATGTAG+TGG 0.631568 5_2:-5265474 None:intergenic
GGGTATATTTCCATCTCTAG+AGG 0.631579 5_2:+5268757 Msa0751780:three_prime_UTR
ACCGATGAAGAAGCTCTCGA+TGG 0.633251 5_2:+5268590 Msa0751780:exon
TGATATATACTTGAAAAGAG+AGG 0.635009 5_2:+5266194 Msa0751780:CDS
GTTGTAAATTGTAGTGGACG+TGG 0.635806 5_2:+5268845 Msa0751780:three_prime_UTR
TCACGTACCATGGTAGGACA+TGG 0.639647 5_2:-5267490 None:intergenic
GTATAATAGTTCATAGTTAG+GGG 0.642332 5_2:-5264964 None:intergenic
ACCACATCCATGTCCTACCA+TGG 0.651627 5_2:+5267483 Msa0751780:CDS
CAAAGAGCGTAACTCTGCGG+TGG 0.651817 5_2:+5265400 Msa0751780:CDS
ACCATGGTAGGACATGGATG+TGG 0.654355 5_2:-5267484 None:intergenic
TTCCAAAGTACAAACTCAGG+GGG 0.657706 5_2:-5269024 None:intergenic
GGCCTATTCAAACAAGTAGG+TGG 0.660554 5_2:-5269002 None:intergenic
TTTCAAAGATGCATCATCAG+GGG 0.660672 5_2:+5267399 Msa0751780:CDS
CATTACAAAAGCAAGAATGG+TGG 0.664051 5_2:+5266162 Msa0751780:CDS
ATGGCCGCATGTAAATTGCA+AGG 0.666722 5_2:+5265335 Msa0751780:CDS
CATGGTACGTGAATTTCAGT+CGG 0.668535 5_2:+5267501 Msa0751780:CDS
CCACCGCTGAACCTGACAAG+TGG 0.669141 5_2:-5267459 None:intergenic
TTGGTGGTCGACGCAACTGG+AGG 0.671260 5_2:-5265188 None:intergenic
GAGAGATTATGCAAATTGGA+GGG 0.672303 5_2:+5268737 Msa0751780:three_prime_UTR
ATTTACAGGATGGAGTACCC+AGG 0.682078 5_2:+5268511 Msa0751780:intron
GCCCAAAGAGCGTAACTCTG+CGG 0.693803 5_2:+5265397 Msa0751780:CDS
TTAAGCACTAATTTACATGG+CGG 0.724379 5_2:-5265148 None:intergenic
TGGACGTGGAGACAAAGATG+CGG 0.727021 5_2:+5268859 Msa0751780:three_prime_UTR
AACCTTTGAGCATGATACAG+TGG 0.737050 5_2:-5266132 None:intergenic
ATTCCAAAGTACAAACTCAG+GGG 0.737228 5_2:-5269025 None:intergenic
TCCAAAGTACAAACTCAGGG+GGG 0.738584 5_2:-5269023 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTATCAGTATATAATT+TGG + chr5_2:5265789-5265808 Msa0751780:intron 10.0%
!!! TTGAAAAGAATTTTTTTTAA+GGG - chr5_2:5265920-5265939 None:intergenic 10.0%
!!! TTTGAAAAGAATTTTTTTTA+AGG - chr5_2:5265921-5265940 None:intergenic 10.0%
!! TGTTCAATAATTAAAATTAA+AGG - chr5_2:5266468-5266487 None:intergenic 10.0%
!! ATTAAACTTATTGTAAAAAA+TGG - chr5_2:5266565-5266584 None:intergenic 10.0%
!!! ATAAAATTGATAACAATTAT+TGG - chr5_2:5267826-5267845 None:intergenic 10.0%
!!! TATTAAATAGTTTAATTTAG+AGG + chr5_2:5268160-5268179 Msa0751780:intron 10.0%
!!! ATTAAATAGTTTAATTTAGA+GGG + chr5_2:5268161-5268180 Msa0751780:intron 10.0%
!! GTAATAAATGATTAATATAT+TGG + chr5_2:5269298-5269317 Msa0751780:three_prime_UTR 10.0%
!! TTAAATTAATTTCAAGATAC+TGG - chr5_2:5265765-5265784 None:intergenic 15.0%
!!! AAAAATTATTGGATTCTTTT+AGG - chr5_2:5266505-5266524 None:intergenic 15.0%
!! TTTAACATTCTCATTTAATT+TGG - chr5_2:5266733-5266752 None:intergenic 15.0%
!! AATTAAATGAGAATGTTAAA+CGG + chr5_2:5266733-5266752 Msa0751780:intron 15.0%
!! AATTACTTGATCAAAAATAA+CGG + chr5_2:5266818-5266837 Msa0751780:intron 15.0%
!! TAATTAAATTGAAATAGGAT+AGG - chr5_2:5267959-5267978 None:intergenic 15.0%
!! ATCACTAATTAAATTGAAAT+AGG - chr5_2:5267964-5267983 None:intergenic 15.0%
!!! AATTTTTATTTGGAAAAAGT+TGG - chr5_2:5268310-5268329 None:intergenic 15.0%
!!! TATATGCACAAATTTTTATT+TGG - chr5_2:5268320-5268339 None:intergenic 15.0%
!!! AATTTTTATTTGGAAAAAGT+TGG - chr5_2:5268310-5268329 None:intergenic 15.0%
!!! TATATGCACAAATTTTTATT+TGG - chr5_2:5268320-5268339 None:intergenic 15.0%
!! AATGATTTAATAAACAAACA+TGG + chr5_2:5268451-5268470 Msa0751780:intron 15.0%
!!! TTTTTTAATTATTTACAGGA+TGG + chr5_2:5268501-5268520 Msa0751780:intron 15.0%
!! AAGAAAAAAAAACTTAAATC+AGG - chr5_2:5269122-5269141 None:intergenic 15.0%
!!! TTAAGTTTTTTTTTCTTTGT+TGG + chr5_2:5269125-5269144 Msa0751780:three_prime_UTR 15.0%
!!! TAAGTTTTTTTTTCTTTGTT+GGG + chr5_2:5269126-5269145 Msa0751780:three_prime_UTR 15.0%
!!! TTCAGGTAATTTTGTTAATT+AGG + chr5_2:5265666-5265685 Msa0751780:intron 20.0%
!!! AATTTTGTTAATTAGGATGA+AGG + chr5_2:5265673-5265692 Msa0751780:intron 20.0%
!!! TTATGTTATTTGATAGTTTG+AGG - chr5_2:5266049-5266068 None:intergenic 20.0%
!! TTTATTTGGCAAAATTTATG+TGG + chr5_2:5266635-5266654 Msa0751780:intron 20.0%
!! AATGTCTTTATCTTTATGTT+TGG - chr5_2:5267276-5267295 None:intergenic 20.0%
!! AATAATGTATGTAAACATGT+AGG + chr5_2:5267357-5267376 Msa0751780:intron 20.0%
!!! GTAATGTCTATGTTTTAATT+AGG - chr5_2:5268631-5268650 None:intergenic 20.0%
!! AAAAATTAAACAACTCACAA+AGG - chr5_2:5269096-5269115 None:intergenic 20.0%
!!! ATGAATTTGTTGAGTTTTAT+GGG + chr5_2:5269211-5269230 Msa0751780:three_prime_UTR 20.0%
!!! AAGTGGTTGTAAGTTTTTTT+AGG - chr5_2:5265026-5265045 None:intergenic 25.0%
! AAAAAACACAAACACAAACA+TGG + chr5_2:5265316-5265335 Msa0751780:exon 25.0%
! AAGCCAATTCATAGAAAAAA+AGG + chr5_2:5265370-5265389 Msa0751780:CDS 25.0%
!!! CTACCTTTTTTTCTATGAAT+TGG - chr5_2:5265376-5265395 None:intergenic 25.0%
! AACAAGTGATTAAACTCTAT+TGG - chr5_2:5265839-5265858 None:intergenic 25.0%
! ATAAAAATAATTGTTCCCAC+AGG + chr5_2:5266065-5266084 Msa0751780:intron 25.0%
!!! TCTCTTTTCAAGTATATATC+AGG - chr5_2:5266195-5266214 None:intergenic 25.0%
! TGATATATACTTGAAAAGAG+AGG + chr5_2:5266194-5266213 Msa0751780:CDS 25.0%
!!! ATTATTGGATTCTTTTAGGT+AGG - chr5_2:5266501-5266520 None:intergenic 25.0%
! AAAATGGAGAAGACAATTAT+TGG - chr5_2:5266549-5266568 None:intergenic 25.0%
!!! TCCTCAATCATTGTTTTATT+TGG + chr5_2:5266621-5266640 Msa0751780:intron 25.0%
!!! AATTTTCATGCCTCTAAAAA+TGG - chr5_2:5267014-5267033 None:intergenic 25.0%
!!! ACCATTTTATTGATTCATCT+AGG + chr5_2:5267192-5267211 Msa0751780:intron 25.0%
! TCCTAGATGAATCAATAAAA+TGG - chr5_2:5267196-5267215 None:intergenic 25.0%
! TCTTTATCTTTATGTTTGGA+AGG - chr5_2:5267272-5267291 None:intergenic 25.0%
! CTACAAAACAATAATACTAC+TGG - chr5_2:5267910-5267929 None:intergenic 25.0%
!! GAAAGTGATTTTGTGTTTTA+TGG + chr5_2:5268106-5268125 Msa0751780:intron 25.0%
!!! GAAAAAGTTGGTCTTTTTTT+TGG - chr5_2:5268298-5268317 None:intergenic 25.0%
! ATCAAATGATGGTCTAATTT+GGG - chr5_2:5268421-5268440 None:intergenic 25.0%
! AATCAAATGATGGTCTAATT+TGG - chr5_2:5268422-5268441 None:intergenic 25.0%
! ACCATCATTTGATTATTGTA+GGG + chr5_2:5268428-5268447 Msa0751780:intron 25.0%
! ACTGTTTAAATATTTGTGCA+TGG - chr5_2:5268691-5268710 None:intergenic 25.0%
! TCCATATAAATTGTATCCAA+AGG + chr5_2:5268925-5268944 Msa0751780:three_prime_UTR 25.0%
! TCCTTTGGATACAATTTATA+TGG - chr5_2:5268929-5268948 None:intergenic 25.0%
! TAAATTGTATCCAAAGGAAA+AGG + chr5_2:5268931-5268950 Msa0751780:three_prime_UTR 25.0%
! TGATTGCATGTTGAAATATT+TGG + chr5_2:5269178-5269197 Msa0751780:three_prime_UTR 25.0%
! GATTGCATGTTGAAATATTT+GGG + chr5_2:5269179-5269198 Msa0751780:three_prime_UTR 25.0%
!!! GATGAATTTGTTGAGTTTTA+TGG + chr5_2:5269210-5269229 Msa0751780:three_prime_UTR 25.0%
ACAAGTGATTGTAACTTGAA+TGG - chr5_2:5264989-5265008 None:intergenic 30.0%
TTACAACCACTTCTACAATA+GGG + chr5_2:5265034-5265053 Msa0751780:five_prime_UTR 30.0%
TTATGTCACGTGTAAATTTG+CGG + chr5_2:5265089-5265108 Msa0751780:five_prime_UTR 30.0%
! CTAGGAATTTTGTAGAATCT+GGG - chr5_2:5265126-5265145 None:intergenic 30.0%
TTAAGCACTAATTTACATGG+CGG - chr5_2:5265151-5265170 None:intergenic 30.0%
TGGTTAAGCACTAATTTACA+TGG - chr5_2:5265154-5265173 None:intergenic 30.0%
GACCACCAAGTATAAATAAA+AGG + chr5_2:5265202-5265221 Msa0751780:five_prime_UTR 30.0%
!! CACCTTTTATTTATACTTGG+TGG - chr5_2:5265207-5265226 None:intergenic 30.0%
!! CAGCACCTTTTATTTATACT+TGG - chr5_2:5265210-5265229 None:intergenic 30.0%
ACAACATAACATACGATAAG+AGG + chr5_2:5265252-5265271 Msa0751780:five_prime_UTR 30.0%
!!! TGTGTTTGTGTTTTTTGTGT+TGG - chr5_2:5265312-5265331 None:intergenic 30.0%
TATATGTAGTGGCTAATTGA+GGG - chr5_2:5265466-5265485 None:intergenic 30.0%
AAAATCTTCAATTCCTACCT+TGG - chr5_2:5265711-5265730 None:intergenic 30.0%
! AGGTAGGAATTGAAGATTTT+TGG + chr5_2:5265711-5265730 Msa0751780:intron 30.0%
!!! GAATTTTTTTTAAGGGTGCA+TGG - chr5_2:5265913-5265932 None:intergenic 30.0%
GAATTCACAAACATAAGAGT+AGG - chr5_2:5266027-5266046 None:intergenic 30.0%
ATTACAAAAGCAAGAATGGT+GGG + chr5_2:5266163-5266182 Msa0751780:CDS 30.0%
ACAGACAATCATCTAATGTA+CGG + chr5_2:5266400-5266419 Msa0751780:CDS 30.0%
GCCAAATAAAACAATGATTG+AGG - chr5_2:5266625-5266644 None:intergenic 30.0%
TATGGGACCTATCTATAAAA+TGG - chr5_2:5266666-5266685 None:intergenic 30.0%
! ATTTGGTTGATTAGTTAAGC+AGG - chr5_2:5266716-5266735 None:intergenic 30.0%
!! ATGCTTTGAGAATATCTTAG+TGG + chr5_2:5266943-5266962 Msa0751780:intron 30.0%
!! ACTCGCTTTAATTGATTTTG+TGG + chr5_2:5267080-5267099 Msa0751780:intron 30.0%
GAAACAAGCATGGAAAAAAT+GGG + chr5_2:5267543-5267562 Msa0751780:CDS 30.0%
AAACAAGCATGGAAAAAATG+GGG + chr5_2:5267544-5267563 Msa0751780:CDS 30.0%
ATCTCCTATTTATTGCAAGA+TGG + chr5_2:5267751-5267770 Msa0751780:CDS 30.0%
ATCACCATCTTGCAATAAAT+AGG - chr5_2:5267758-5267777 None:intergenic 30.0%
TATTTATTGCAAGATGGTGA+TGG + chr5_2:5267757-5267776 Msa0751780:CDS 30.0%
GCATAAACATAAAATATGCC+CGG + chr5_2:5268252-5268271 Msa0751780:intron 30.0%
CATAAACATAAAATATGCCC+GGG + chr5_2:5268253-5268272 Msa0751780:intron 30.0%
ATAAACATAAAATATGCCCG+GGG + chr5_2:5268254-5268273 Msa0751780:intron 30.0%
!! TATTTTTGTGTGTTTGTTCC+CGG + chr5_2:5268338-5268357 Msa0751780:intron 30.0%
!!! GGAAAAAGTTGGTCTTTTTT+TGG - chr5_2:5268299-5268318 None:intergenic 30.0%
GACCATCATTTGATTATTGT+AGG + chr5_2:5268427-5268446 Msa0751780:intron 30.0%
TCCCTACAATAATCAAATGA+TGG - chr5_2:5268432-5268451 None:intergenic 30.0%
ATTGGCTATATTAGATAAGC+TGG + chr5_2:5268790-5268809 Msa0751780:three_prime_UTR 30.0%
TTTACCAAACGACAACATTA+AGG + chr5_2:5268820-5268839 Msa0751780:three_prime_UTR 30.0%
AAGGTTGTTGTAAATTGTAG+TGG + chr5_2:5268839-5268858 Msa0751780:three_prime_UTR 30.0%
! TAGTGTTTTTCCTTTTCCTT+TGG - chr5_2:5268944-5268963 None:intergenic 30.0%
CTTACAACCACTTCTACAAT+AGG + chr5_2:5265033-5265052 Msa0751780:five_prime_UTR 35.0%
ATTATGCCCTATTGTAGAAG+TGG - chr5_2:5265043-5265062 None:intergenic 35.0%
! GCTAGGAATTTTGTAGAATC+TGG - chr5_2:5265127-5265146 None:intergenic 35.0%
TGTACCTTGCAATTTACATG+CGG - chr5_2:5265342-5265361 None:intergenic 35.0%
GGTAACTCGTGATAAGTTTA+AGG + chr5_2:5265433-5265452 Msa0751780:CDS 35.0%
GTATATGTAGTGGCTAATTG+AGG - chr5_2:5265467-5265486 None:intergenic 35.0%
!! TTTCTCAATCAAGGGTATTG+TGG - chr5_2:5265501-5265520 None:intergenic 35.0%
! TGGCTCTACAATAATTTCTG+TGG - chr5_2:5265525-5265544 None:intergenic 35.0%
ACCACTTCTACTGGAAAATT+TGG + chr5_2:5265551-5265570 Msa0751780:CDS 35.0%
! ACCAAATTTTCCAGTAGAAG+TGG - chr5_2:5265555-5265574 None:intergenic 35.0%
CTTCTACTGGAAAATTTGGT+AGG + chr5_2:5265555-5265574 Msa0751780:CDS 35.0%
ACTGGAAAATTTGGTAGGTT+TGG + chr5_2:5265560-5265579 Msa0751780:CDS 35.0%
GAAAATTTGGTAGGTTTGGA+GGG + chr5_2:5265564-5265583 Msa0751780:CDS 35.0%
AAGCACATTACAAGTGTTTC+TGG - chr5_2:5265599-5265618 None:intergenic 35.0%
! TTTTAAACTCAGCTTCAAGC+TGG - chr5_2:5265625-5265644 None:intergenic 35.0%
TTACCTGAAAAACATCATCG+TGG - chr5_2:5265655-5265674 None:intergenic 35.0%
ACAGCATTAAGAGACTATGT+TGG + chr5_2:5266099-5266118 Msa0751780:CDS 35.0%
GAGCATTACAAAAGCAAGAA+TGG + chr5_2:5266159-5266178 Msa0751780:CDS 35.0%
CATTACAAAAGCAAGAATGG+TGG + chr5_2:5266162-5266181 Msa0751780:CDS 35.0%
! GGTCCTACCATTTTATAGAT+AGG + chr5_2:5266656-5266675 Msa0751780:intron 35.0%
GGACCTATCTATAAAATGGT+AGG - chr5_2:5266662-5266681 None:intergenic 35.0%
GTTACGAGGATCATAACTAT+GGG - chr5_2:5266683-5266702 None:intergenic 35.0%
! TAGTTAAGCAGGACTTTTCT+TGG - chr5_2:5266705-5266724 None:intergenic 35.0%
TTGAGAATATCTTAGTGGCA+CGG + chr5_2:5266948-5266967 Msa0751780:intron 35.0%
ATATGATCGATCATGCTTTG+TGG + chr5_2:5267227-5267246 Msa0751780:intron 35.0%
! ATGTAGGTTGAAGCTGTAAA+TGG + chr5_2:5267373-5267392 Msa0751780:intron 35.0%
TGTTTCAAAGATGCATCATC+AGG + chr5_2:5267397-5267416 Msa0751780:CDS 35.0%
GTTTCAAAGATGCATCATCA+GGG + chr5_2:5267398-5267417 Msa0751780:CDS 35.0%
TTTCAAAGATGCATCATCAG+GGG + chr5_2:5267399-5267418 Msa0751780:CDS 35.0%
AAGAAACAAGGAAACAAGCA+TGG + chr5_2:5267533-5267552 Msa0751780:CDS 35.0%
GGAAACAAGCATGGAAAAAA+TGG + chr5_2:5267542-5267561 Msa0751780:CDS 35.0%
ACACTTGCAACAATAATGTC+TGG - chr5_2:5267577-5267596 None:intergenic 35.0%
GACATTATTGTTGCAAGTGT+TGG + chr5_2:5267577-5267596 Msa0751780:CDS 35.0%
TGGAAAACATTCTTCCACTT+TGG + chr5_2:5267696-5267715 Msa0751780:CDS 35.0%
ATAAACACCCATTTCTCCTT+TGG - chr5_2:5267722-5267741 None:intergenic 35.0%
!!! GTTGGTCTTTTTTTTGGTAG+TGG - chr5_2:5268292-5268311 None:intergenic 35.0%
!!! AGTTGGTCTTTTTTTGGTAG+TGG - chr5_2:5268364-5268383 None:intergenic 35.0%
GTACGAGAGATTATGCAAAT+TGG + chr5_2:5268733-5268752 Msa0751780:three_prime_UTR 35.0%
GAGAGATTATGCAAATTGGA+GGG + chr5_2:5268737-5268756 Msa0751780:three_prime_UTR 35.0%
! ATGTTGTCGTTTGGTAAAGT+AGG - chr5_2:5268818-5268837 None:intergenic 35.0%
ACAACCTTAATGTTGTCGTT+TGG - chr5_2:5268827-5268846 None:intergenic 35.0%
ATTCCAAAGTACAAACTCAG+GGG - chr5_2:5269028-5269047 None:intergenic 35.0%
GATTCCAAAGTACAAACTCA+GGG - chr5_2:5269029-5269048 None:intergenic 35.0%
TGATTCCAAAGTACAAACTC+AGG - chr5_2:5269030-5269049 None:intergenic 35.0%
!!! GTTGGGATTTTTTGAGTTGA+AGG + chr5_2:5269143-5269162 Msa0751780:three_prime_UTR 35.0%
!! TCAATCAAGGGTATTGTGGA+AGG - chr5_2:5265497-5265516 None:intergenic 40.0%
TCTGTGGCTTTCTCAATCAA+GGG - chr5_2:5265509-5265528 None:intergenic 40.0%
TTCTGTGGCTTTCTCAATCA+AGG - chr5_2:5265510-5265529 None:intergenic 40.0%
GGAAAATTTGGTAGGTTTGG+AGG + chr5_2:5265563-5265582 Msa0751780:CDS 40.0%
CTGAAAAACATCATCGTGGA+GGG - chr5_2:5265651-5265670 None:intergenic 40.0%
TTCAATTCCTACCTTGGACA+CGG - chr5_2:5265705-5265724 None:intergenic 40.0%
AACCTTTGAGCATGATACAG+TGG - chr5_2:5266135-5266154 None:intergenic 40.0%
! AAAAGCAAGAATGGTGGGAA+AGG + chr5_2:5266168-5266187 Msa0751780:CDS 40.0%
! AAAGCAAGAATGGTGGGAAA+GGG + chr5_2:5266169-5266188 Msa0751780:CDS 40.0%
AGAGAGGATCTAAACCATAC+TGG + chr5_2:5266210-5266229 Msa0751780:CDS 40.0%
!! CGGTCGAAAAAGTGTCATTA+CGG + chr5_2:5266284-5266303 Msa0751780:CDS 40.0%
TGATTGTCTGTCCATGTCTT+TGG - chr5_2:5266391-5266410 None:intergenic 40.0%
GGTTACGAGGATCATAACTA+TGG - chr5_2:5266684-5266703 None:intergenic 40.0%
AATGTTAAACGGTGCCCTTT+GGG + chr5_2:5266744-5266763 Msa0751780:intron 40.0%
TTGCTTAACCAATGCCCAAA+GGG - chr5_2:5266761-5266780 None:intergenic 40.0%
TTTGCTTAACCAATGCCCAA+AGG - chr5_2:5266762-5266781 None:intergenic 40.0%
!! ACCAAATGGGTCTTGTTAAC+CGG - chr5_2:5266911-5266930 None:intergenic 40.0%
AAGACCCATTTGGTCCTAAA+GGG + chr5_2:5266917-5266936 Msa0751780:intron 40.0%
TGAGAATATCTTAGTGGCAC+GGG + chr5_2:5266949-5266968 Msa0751780:intron 40.0%
!! TATCCGTGCACCATTTTTAG+AGG + chr5_2:5267001-5267020 Msa0751780:intron 40.0%
! ATGCCTCTAAAAATGGTGCA+CGG - chr5_2:5267007-5267026 None:intergenic 40.0%
ATCGATCATGCTTTGTGGTT+TGG + chr5_2:5267232-5267251 Msa0751780:intron 40.0%
!! ATCATGCTTTGTGGTTTGGT+GGG + chr5_2:5267236-5267255 Msa0751780:intron 40.0%
TGAAATTCACGTACCATGGT+AGG - chr5_2:5267499-5267518 None:intergenic 40.0%
CATGGTACGTGAATTTCAGT+CGG + chr5_2:5267501-5267520 Msa0751780:CDS 40.0%
GTGAATTTCAGTCGGTGATT+GGG + chr5_2:5267509-5267528 Msa0751780:CDS 40.0%
!! ATTGTTGCAAGTGTTGGAAC+AGG + chr5_2:5267583-5267602 Msa0751780:CDS 40.0%
GGAACAGGTTCAAATGCTTT+AGG + chr5_2:5267598-5267617 Msa0751780:CDS 40.0%
CTGTGTCTGATAGAAACTCA+TGG - chr5_2:5267630-5267649 None:intergenic 40.0%
GACACAGATGTGAGATTGAT+TGG + chr5_2:5267643-5267662 Msa0751780:CDS 40.0%
ACTTTGGCCAAAGGAGAAAT+GGG + chr5_2:5267712-5267731 Msa0751780:CDS 40.0%
GGAGAAATGGGTGTTTATCA+TGG + chr5_2:5267724-5267743 Msa0751780:CDS 40.0%
TCACGAGGACAATCAAAAGT+TGG - chr5_2:5268207-5268226 None:intergenic 40.0%
!!! TCTTTTTTTTGGTAGTGGCC+GGG - chr5_2:5268287-5268306 None:intergenic 40.0%
!!! GTCTTTTTTTTGGTAGTGGC+CGG - chr5_2:5268288-5268307 None:intergenic 40.0%
! TTTCTGAGGAAACTCAACTC+TGG - chr5_2:5268544-5268563 None:intergenic 40.0%
AGTTGAGTTTCCTCAGAAAG+TGG + chr5_2:5268545-5268564 Msa0751780:CDS 40.0%
GTTGAGTTTCCTCAGAAAGT+GGG + chr5_2:5268546-5268565 Msa0751780:CDS 40.0%
CGAGAGATTATGCAAATTGG+AGG + chr5_2:5268736-5268755 Msa0751780:three_prime_UTR 40.0%
GGGTATATTTCCATCTCTAG+AGG + chr5_2:5268757-5268776 Msa0751780:three_prime_UTR 40.0%
!! GTTGTAAATTGTAGTGGACG+TGG + chr5_2:5268845-5268864 Msa0751780:three_prime_UTR 40.0%
AGCCACCTACTTGTTTGAAT+AGG + chr5_2:5269000-5269019 Msa0751780:three_prime_UTR 40.0%
TTCCAAAGTACAAACTCAGG+GGG - chr5_2:5269027-5269046 None:intergenic 40.0%
! CTAATTTACATGGCGGAGCT+AGG - chr5_2:5265144-5265163 None:intergenic 45.0%
ATGGCCGCATGTAAATTGCA+AGG + chr5_2:5265335-5265354 Msa0751780:CDS 45.0%
! AGGCAAGGGTGTATATGTAG+TGG - chr5_2:5265477-5265496 None:intergenic 45.0%
!! AAGGGTATTGTGGAAGGCAA+GGG - chr5_2:5265491-5265510 None:intergenic 45.0%
CCAGTAGAAGTGGTATCTTC+TGG - chr5_2:5265545-5265564 None:intergenic 45.0%
CCAGAAGATACCACTTCTAC+TGG + chr5_2:5265542-5265561 Msa0751780:CDS 45.0%
CCTGAAAAACATCATCGTGG+AGG - chr5_2:5265652-5265671 None:intergenic 45.0%
! CCTCCACGATGATGTTTTTC+AGG + chr5_2:5265649-5265668 Msa0751780:CDS 45.0%
CACCACTGTATCATGCTCAA+AGG + chr5_2:5266130-5266149 Msa0751780:CDS 45.0%
TCATCTTGTGAGAGCCAGTA+TGG - chr5_2:5266227-5266246 None:intergenic 45.0%
!! AAAAGTGTCATTACGGCCAC+CGG + chr5_2:5266291-5266310 Msa0751780:CDS 45.0%
! TGCATGCGCAAAACTTGCTT+TGG + chr5_2:5266344-5266363 Msa0751780:CDS 45.0%
! TTTGGAGTGCACCGTCTTTA+TGG + chr5_2:5266362-5266381 Msa0751780:CDS 45.0%
GTCTTTGGCAGCCATAAAGA+CGG - chr5_2:5266376-5266395 None:intergenic 45.0%
CTTTATGGCTGCCAAAGACA+TGG + chr5_2:5266377-5266396 Msa0751780:CDS 45.0%
!! GTACGGTTGATGAAGCTCTT+AGG + chr5_2:5266417-5266436 Msa0751780:CDS 45.0%
GATGAAGCTCTTAGGAGCTA+AGG + chr5_2:5266425-5266444 Msa0751780:CDS 45.0%
! CAGGACTTTTCTTGGTTACG+AGG - chr5_2:5266697-5266716 None:intergenic 45.0%
GAATGTTAAACGGTGCCCTT+TGG + chr5_2:5266743-5266762 Msa0751780:intron 45.0%
CAAGACCCATTTGGTCCTAA+AGG + chr5_2:5266916-5266935 Msa0751780:intron 45.0%
AGACCCATTTGGTCCTAAAG+GGG + chr5_2:5266918-5266937 Msa0751780:intron 45.0%
ATTCCTTCCATCCATGCTCT+GGG - chr5_2:5266978-5266997 None:intergenic 45.0%
! GATCATGCTTTGTGGTTTGG+TGG + chr5_2:5267235-5267254 Msa0751780:intron 45.0%
!! TCATGCTTTGTGGTTTGGTG+GGG + chr5_2:5267237-5267256 Msa0751780:intron 45.0%
GAAAACAGCTACCACTTGTC+AGG + chr5_2:5267448-5267467 Msa0751780:CDS 45.0%
CGACTGAAATTCACGTACCA+TGG - chr5_2:5267503-5267522 None:intergenic 45.0%
CGTGAATTTCAGTCGGTGAT+TGG + chr5_2:5267508-5267527 Msa0751780:CDS 45.0%
CGGTGATTGGGAAAGAAACA+AGG + chr5_2:5267521-5267540 Msa0751780:CDS 45.0%
CAAGCATGGAAAAAATGGGG+AGG + chr5_2:5267547-5267566 Msa0751780:CDS 45.0%
TTGATTGGAGTTGAAGCTGC+TGG + chr5_2:5267658-5267677 Msa0751780:CDS 45.0%
!! GAGTTGAAGCTGCTGGTTTA+GGG + chr5_2:5267665-5267684 Msa0751780:CDS 45.0%
! GCTGGTTTAGGGTTAGATAG+TGG + chr5_2:5267676-5267695 Msa0751780:CDS 45.0%
CATTCTTCCACTTTGGCCAA+AGG + chr5_2:5267703-5267722 Msa0751780:CDS 45.0%
CATTTCTCCTTTGGCCAAAG+TGG - chr5_2:5267713-5267732 None:intergenic 45.0%
CACTTTGGCCAAAGGAGAAA+TGG + chr5_2:5267711-5267730 Msa0751780:CDS 45.0%
!!! CTTTTTTTTGGTAGTGGCCG+GGG - chr5_2:5268286-5268305 None:intergenic 45.0%
!!! GTCTTTTTTTGGTAGTGGCC+GGG - chr5_2:5268359-5268378 None:intergenic 45.0%
!!! GGTCTTTTTTTGGTAGTGGC+CGG - chr5_2:5268360-5268379 None:intergenic 45.0%
! ATTTACAGGATGGAGTACCC+AGG + chr5_2:5268511-5268530 Msa0751780:intron 45.0%
ACCATCGAGAGCTTCTTCAT+CGG - chr5_2:5268594-5268613 None:intergenic 45.0%
GGCCTATTCAAACAAGTAGG+TGG - chr5_2:5269005-5269024 None:intergenic 45.0%
TCCAAAGTACAAACTCAGGG+GGG - chr5_2:5269026-5269045 None:intergenic 45.0%
!!! ATATGTTTTTAAATTTAAAT+TGG - chr5_2:5265946-5265965 None:intergenic 5.0%
!! TTTCAAAAAAAAAAAATTAT+TGG - chr5_2:5266516-5266535 None:intergenic 5.0%
!!! TTAAAAAAATAATTTTTCAT+TGG + chr5_2:5268062-5268081 Msa0751780:intron 5.0%
!!! TTTTTTTTTTAATTATTTAC+AGG + chr5_2:5268497-5268516 Msa0751780:intron 5.0%
! TGGAGGCGTGTTAGACTGTT+TGG - chr5_2:5265174-5265193 None:intergenic 50.0%
ACCGCAGAGTTACGCTCTTT+GGG - chr5_2:5265401-5265420 None:intergenic 50.0%
!! CAAGGGTATTGTGGAAGGCA+AGG - chr5_2:5265492-5265511 None:intergenic 50.0%
GAAGGACAATACCGTGTCCA+AGG + chr5_2:5265691-5265710 Msa0751780:intron 50.0%
GACAATACCGTGTCCAAGGT+AGG + chr5_2:5265695-5265714 Msa0751780:intron 50.0%
GCTATGATTGCCAAGCGCAT+CGG + chr5_2:5266264-5266283 Msa0751780:CDS 50.0%
!!! ACTTTTTCGACCGATGCGCT+TGG - chr5_2:5266277-5266296 None:intergenic 50.0%
GCCGGTTAACAAGACCCATT+TGG + chr5_2:5266907-5266926 Msa0751780:intron 50.0%
!! TCGCCCCTTTAGGACCAAAT+GGG - chr5_2:5266924-5266943 None:intergenic 50.0%
!! ATCGCCCCTTTAGGACCAAA+TGG - chr5_2:5266925-5266944 None:intergenic 50.0%
!! TCTCAAAGCATCGCCCCTTT+AGG - chr5_2:5266934-5266953 None:intergenic 50.0%
CATTCCTTCCATCCATGCTC+TGG - chr5_2:5266979-5266998 None:intergenic 50.0%
CAGAGCATGGATGGAAGGAA+TGG + chr5_2:5266977-5266996 Msa0751780:intron 50.0%
!! CATGCTTTGTGGTTTGGTGG+GGG + chr5_2:5267238-5267257 Msa0751780:intron 50.0%
! ATCAGGGGCTTTTCGCTGTT+GGG + chr5_2:5267414-5267433 Msa0751780:CDS 50.0%
CTACCACTTGTCAGGTTCAG+CGG + chr5_2:5267456-5267475 Msa0751780:CDS 50.0%
ACCACATCCATGTCCTACCA+TGG + chr5_2:5267483-5267502 Msa0751780:CDS 50.0%
ACCATGGTAGGACATGGATG+TGG - chr5_2:5267487-5267506 None:intergenic 50.0%
TCACGTACCATGGTAGGACA+TGG - chr5_2:5267493-5267512 None:intergenic 50.0%
!! GGAGTTGAAGCTGCTGGTTT+AGG + chr5_2:5267664-5267683 Msa0751780:CDS 50.0%
AACCTCACTCCATTGCAGCT+GGG + chr5_2:5267791-5267810 Msa0751780:CDS 50.0%
TGTGACTTACCCAGCTGCAA+TGG - chr5_2:5267803-5267822 None:intergenic 50.0%
TGAGCGTAGCTCAGTTGGTT+GGG + chr5_2:5268224-5268243 Msa0751780:intron 50.0%
TCAACTCTGGACCAACTCCT+GGG - chr5_2:5268531-5268550 None:intergenic 50.0%
ACCGATGAAGAAGCTCTCGA+TGG + chr5_2:5268590-5268609 Msa0751780:exon 50.0%
TCTAGAGGCAGCACATGCAT+TGG + chr5_2:5268772-5268791 Msa0751780:three_prime_UTR 50.0%
TGGACGTGGAGACAAAGATG+CGG + chr5_2:5268859-5268878 Msa0751780:three_prime_UTR 50.0%
GGGGGCCTATTCAAACAAGT+AGG - chr5_2:5269008-5269027 None:intergenic 50.0%
! TACTTGGTGGTCGACGCAAC+TGG - chr5_2:5265194-5265213 None:intergenic 55.0%
! GCCCAAAGAGCGTAACTCTG+CGG + chr5_2:5265397-5265416 Msa0751780:CDS 55.0%
CACCGCAGAGTTACGCTCTT+TGG - chr5_2:5265402-5265421 None:intergenic 55.0%
! CAAAGAGCGTAACTCTGCGG+TGG + chr5_2:5265400-5265419 Msa0751780:CDS 55.0%
!! CTGTTGCTAGCTCTGCCTGT+GGG - chr5_2:5266083-5266102 None:intergenic 55.0%
AAGCCCATGATGTCCTGAGC+CGG - chr5_2:5266313-5266332 None:intergenic 55.0%
AAACGGTGCCCTTTGGGCAT+TGG + chr5_2:5266750-5266769 Msa0751780:intron 55.0%
TTGTTAACCGGCGCCTCTTG+GGG - chr5_2:5266899-5266918 None:intergenic 55.0%
CTTGTTAACCGGCGCCTCTT+GGG - chr5_2:5266900-5266919 None:intergenic 55.0%
TCTTGTTAACCGGCGCCTCT+TGG - chr5_2:5266901-5266920 None:intergenic 55.0%
TAGCCCAGAGCATGGATGGA+AGG + chr5_2:5266972-5266991 Msa0751780:intron 55.0%
! CATCAGGGGCTTTTCGCTGT+TGG + chr5_2:5267413-5267432 Msa0751780:CDS 55.0%
!! TCGCTGTTGGGTTGGAGACT+TGG + chr5_2:5267426-5267445 Msa0751780:CDS 55.0%
CACTTGTCAGGTTCAGCGGT+GGG + chr5_2:5267460-5267479 Msa0751780:CDS 55.0%
GAACCTCACTCCATTGCAGC+TGG + chr5_2:5267790-5267809 Msa0751780:CDS 55.0%
TACCCAGCTGCAATGGAGTG+AGG - chr5_2:5267796-5267815 None:intergenic 55.0%
GTGAGCGTAGCTCAGTTGGT+TGG + chr5_2:5268223-5268242 Msa0751780:intron 55.0%
! AGGATGGAGTACCCAGGAGT+TGG + chr5_2:5268517-5268536 Msa0751780:intron 55.0%
CTCAACTCTGGACCAACTCC+TGG - chr5_2:5268532-5268551 None:intergenic 55.0%
! GCATGTGCTGCCTCTAGAGA+TGG - chr5_2:5268770-5268789 None:intergenic 55.0%
GCCCCCCTGAGTTTGTACTT+TGG + chr5_2:5269022-5269041 Msa0751780:three_prime_UTR 55.0%
! TTGGTGGTCGACGCAACTGG+AGG - chr5_2:5265191-5265210 None:intergenic 60.0%
CTCTGCGGTGGTTCAAGCAG+TGG + chr5_2:5265412-5265431 Msa0751780:CDS 60.0%
!! GCTGTTGCTAGCTCTGCCTG+TGG - chr5_2:5266084-5266103 None:intergenic 60.0%
!! CCACCGGCTCAGGACATCAT+GGG + chr5_2:5266307-5266326 Msa0751780:CDS 60.0%
TGTTAACCGGCGCCTCTTGG+GGG - chr5_2:5266898-5266917 None:intergenic 60.0%
! GGGGCTTTTCGCTGTTGGGT+TGG + chr5_2:5267418-5267437 Msa0751780:CDS 60.0%
CCACCGCTGAACCTGACAAG+TGG - chr5_2:5267462-5267481 None:intergenic 60.0%
CCACTTGTCAGGTTCAGCGG+TGG + chr5_2:5267459-5267478 Msa0751780:CDS 60.0%
CCAACTGAGCTACGCTCACG+AGG - chr5_2:5268222-5268241 None:intergenic 60.0%
CCTCGTGAGCGTAGCTCAGT+TGG + chr5_2:5268219-5268238 Msa0751780:intron 60.0%
TATGCCCGGGGTTCAAACCC+CGG + chr5_2:5268266-5268285 Msa0751780:intron 60.0%
CTCTGCACGCCCACTTTCTG+AGG - chr5_2:5268558-5268577 None:intergenic 60.0%
!! GTCATTACGGCCACCGGCTC+AGG + chr5_2:5266297-5266316 Msa0751780:CDS 65.0%
!! GCCACCGGCTCAGGACATCA+TGG + chr5_2:5266306-5266325 Msa0751780:CDS 65.0%
CCCATGATGTCCTGAGCCGG+TGG - chr5_2:5266310-5266329 None:intergenic 65.0%
CGGGTAGCCCAGAGCATGGA+TGG + chr5_2:5266968-5266987 Msa0751780:intron 65.0%
AGTGGCCGGGGTTTGAACCC+CGG - chr5_2:5268274-5268293 None:intergenic 65.0%
CTAGTGCCCCAGCCCCCAAG+AGG + chr5_2:5266883-5266902 Msa0751780:intron 70.0%
GGCACGGGTAGCCCAGAGCA+TGG + chr5_2:5266964-5266983 Msa0751780:intron 70.0%
GTGGCCGGGGTTTGAACCCC+GGG - chr5_2:5268273-5268292 None:intergenic 70.0%
ACCGGCGCCTCTTGGGGGCT+GGG - chr5_2:5266893-5266912 None:intergenic 75.0%
AACCGGCGCCTCTTGGGGGC+TGG - chr5_2:5266894-5266913 None:intergenic 75.0%
! CCGGCGCCTCTTGGGGGCTG+GGG - chr5_2:5266892-5266911 None:intergenic 80.0%
!! CCCCAGCCCCCAAGAGGCGC+CGG + chr5_2:5266889-5266908 Msa0751780:intron 80.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 5264967 5269323 5264967 ID=Msa0751780;Name=Msa0751780
chr5_2 mRNA 5264967 5269323 5264967 ID=Msa0751780-mRNA-1;Parent=Msa0751780;Name=Msa0751780-mRNA-1;_AED=0.06;_eAED=0.06;_QI=368|1|1|1|0.75|0.8|5|606|402
chr5_2 exon 5264967 5265670 5264967 ID=Msa0751780-mRNA-1:exon:2101;Parent=Msa0751780-mRNA-1
chr5_2 exon 5266087 5266446 5266087 ID=Msa0751780-mRNA-1:exon:2102;Parent=Msa0751780-mRNA-1
chr5_2 exon 5267379 5267812 5267379 ID=Msa0751780-mRNA-1:exon:2103;Parent=Msa0751780-mRNA-1
chr5_2 exon 5268519 5268611 5268519 ID=Msa0751780-mRNA-1:exon:2104;Parent=Msa0751780-mRNA-1
chr5_2 exon 5268732 5269323 5268732 ID=Msa0751780-mRNA-1:exon:2105;Parent=Msa0751780-mRNA-1
chr5_2 five_prime_UTR 5264967 5265334 5264967 ID=Msa0751780-mRNA-1:five_prime_utr;Parent=Msa0751780-mRNA-1
chr5_2 CDS 5265335 5265670 5265335 ID=Msa0751780-mRNA-1:cds;Parent=Msa0751780-mRNA-1
chr5_2 CDS 5266087 5266446 5266087 ID=Msa0751780-mRNA-1:cds;Parent=Msa0751780-mRNA-1
chr5_2 CDS 5267379 5267812 5267379 ID=Msa0751780-mRNA-1:cds;Parent=Msa0751780-mRNA-1
chr5_2 CDS 5268519 5268597 5268519 ID=Msa0751780-mRNA-1:cds;Parent=Msa0751780-mRNA-1
chr5_2 three_prime_UTR 5268598 5268611 5268598 ID=Msa0751780-mRNA-1:three_prime_utr;Parent=Msa0751780-mRNA-1
chr5_2 three_prime_UTR 5268732 5269323 5268732 ID=Msa0751780-mRNA-1:three_prime_utr;Parent=Msa0751780-mRNA-1
Gene Sequence

>Msa0751780

ATGGCCGCATGTAAATTGCAAGGTACAATTGTAAGAAGCCAATTCATAGAAAAAAAGGTAGTGCCCAAAGAGCGTAACTCTGCGGTGGTTCAAGCAGTGGTAACTCGTGATAAGTTTAAGGTTAAGATCCCTCAATTAGCCACTACATATACACCCTTGCCTTCCACAATACCCTTGATTGAGAAAGCCACAGAAATTATTGTAGAGCCAGAAGATACCACTTCTACTGGAAAATTTGGTAGGTTTGGAGGGAAGTTTGTACCAGAAACACTTGTAATGTGCTTGAACCAGCTTGAAGCTGAGTTTAAAAATGCCCTCCACGATGATGTTTTTCAGGCAGAGCTAGCAACAGCATTAAGAGACTATGTTGGAAGAGAGACACCACTGTATCATGCTCAAAGGTTGTCAGAGCATTACAAAAGCAAGAATGGTGGGAAAGGGCCTGATATATACTTGAAAAGAGAGGATCTAAACCATACTGGCTCTCACAAGATGAACAATGCTCTTGCACAAGCTATGATTGCCAAGCGCATCGGTCGAAAAAGTGTCATTACGGCCACCGGCTCAGGACATCATGGGCTTGCAACAGCTGCTGCATGCGCAAAACTTGCTTTGGAGTGCACCGTCTTTATGGCTGCCAAAGACATGGACAGACAATCATCTAATGTACGGTTGATGAAGCTCTTAGGAGCTAAGGTTGAAGCTGTAAATGGATGTTTCAAAGATGCATCATCAGGGGCTTTTCGCTGTTGGGTTGGAGACTTGGAAAACAGCTACCACTTGTCAGGTTCAGCGGTGGGACCACATCCATGTCCTACCATGGTACGTGAATTTCAGTCGGTGATTGGGAAAGAAACAAGGAAACAAGCATGGAAAAAATGGGGAGGAAAACCAGACATTATTGTTGCAAGTGTTGGAACAGGTTCAAATGCTTTAGGTATATTCCATGAGTTTCTATCAGACACAGATGTGAGATTGATTGGAGTTGAAGCTGCTGGTTTAGGGTTAGATAGTGGAAAACATTCTTCCACTTTGGCCAAAGGAGAAATGGGTGTTTATCATGGTGCTATCTCCTATTTATTGCAAGATGGTGATGGACAAATTATTGAACCTCACTCCATTGCAGCTGGGATGGAGTACCCAGGAGTTGGTCCAGAGTTGAGTTTCCTCAGAAAGTGGGCGTGCAGAGTTTTGTGTCGCAACCGATGA
Protein sequence

>Msa0751780

MAACKLQGTIVRSQFIEKKVVPKERNSAVVQAVVTRDKFKVKIPQLATTYTPLPSTIPLIEKATEIIVEPEDTTSTGKFGRFGGKFVPETLVMCLNQLEAEFKNALHDDVFQAELATALRDYVGRETPLYHAQRLSEHYKSKNGGKGPDIYLKREDLNHTGSHKMNNALAQAMIAKRIGRKSVITATGSGHHGLATAAACAKLALECTVFMAAKDMDRQSSNVRLMKLLGAKVEAVNGCFKDASSGAFRCWVGDLENSYHLSGSAVGPHPCPTMVREFQSVIGKETRKQAWKKWGGKPDIIVASVGTGSNALGIFHEFLSDTDVRLIGVEAAGLGLDSGKHSSTLAKGEMGVYHGAISYLLQDGDGQIIEPHSIAAGMEYPGVGPELSFLRKWACRVLCRNR*