AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0711330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0711330 MtrunA17_Chr5g0394121 95.708 466 20 0 1 466 1 466 0.0 903
Msa0711330 MtrunA17_Chr3g0098621 64.631 393 134 3 68 457 12 402 0.0 535
Msa0711330 MtrunA17_Chr3g0097941 61.220 410 152 4 55 461 55 460 0.0 530
Msa0711330 MtrunA17_Chr6g0456431 27.679 336 194 9 123 430 124 438 2.06e-19 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0711330 AT5G28237.1 61.075 465 171 4 1 463 1 457 0.0 560
Msa0711330 AT5G54810.1 58.182 440 163 5 41 461 27 464 0.0 523
Msa0711330 AT4G27070.1 62.694 386 139 3 75 457 82 465 0.0 520
Msa0711330 AT5G28237.2 58.950 419 163 3 1 417 1 412 4.45e-172 491
Msa0711330 AT5G38530.1 27.492 331 201 8 123 430 130 444 4.89e-19 90.1

Find 152 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATTTCATGTTGAAATATT+TGG 0.065456 5_1:+3227278 Msa0711330:three_prime_UTR
ACCACTTCTAATGGAAAATT+TGG 0.173862 5_1:+3223430 Msa0711330:CDS
TTTGGAGTGCACGGTCTTTA+TGG 0.214615 5_1:+3224257 Msa0711330:CDS
TCCTTTGGATACAATTTATA+TGG 0.214819 5_1:-3227022 None:intergenic
GGTTACTCGTGATAAGTTTA+AGG 0.215974 5_1:+3223312 Msa0711330:CDS
GTAATAAATGATTAATATAT+TGG 0.227486 5_1:+3227398 Msa0711330:three_prime_UTR
GGAGTTGAAGCTGCTGGTTT+AGG 0.247180 5_1:+3225566 Msa0711330:CDS
CACCGCAGAGTTACGCTCTT+TGG 0.262865 5_1:-3223278 None:intergenic
AAGCACATTACAAGTGTTTC+TGG 0.272299 5_1:-3223475 None:intergenic
TTTACCAAACGACAACATTA+AGG 0.283769 5_1:+3226916 Msa0711330:CDS
AATGGAAAATTTGGTAGGTT+TGG 0.292394 5_1:+3223439 Msa0711330:CDS
TTATAACTATTTATATATTC+TGG 0.294421 5_1:+3222915 Msa0711330:five_prime_UTR
GGAACAGGTTCAAATGCTTT+AGG 0.299421 5_1:+3225500 Msa0711330:CDS
GAGTTGAAGCTGCTGGTTTA+GGG 0.305218 5_1:+3225567 Msa0711330:CDS
GATTTCATGTTGAAATATTT+GGG 0.309837 5_1:+3227279 Msa0711330:three_prime_UTR
CTGCACGCCCACTTTCTTTG+TGG 0.315424 5_1:-3226459 None:intergenic
CTTACAACCACTTCTACAAT+AGG 0.315989 5_1:+3222876 Msa0711330:five_prime_UTR
CACTTTGGCCAAAGGAGAAA+TGG 0.320799 5_1:+3225613 Msa0711330:CDS
GTCATTACGGCCACCGGTTC+AGG 0.323596 5_1:+3224192 Msa0711330:CDS
GCCCAGACTCTACAAAATTC+CGG 0.324786 5_1:+3222965 Msa0711330:five_prime_UTR
GACCACCAAGTATAAATAAA+AGG 0.327114 5_1:+3223081 Msa0711330:five_prime_UTR
ATGTAGGTTGAAGCTGTAAA+TGG 0.356386 5_1:+3225275 Msa0711330:intron
CGTGAATTTCAGTCGGTGAT+TGG 0.356593 5_1:+3225410 Msa0711330:CDS
TGATTGTCTGTCCATGTCTT+TGG 0.364123 5_1:-3224283 None:intergenic
ATAAACACCCATTTCTCCTT+TGG 0.365617 5_1:-3225621 None:intergenic
TCATCTTGTGAGAGCCAGTA+TGG 0.367051 5_1:-3224119 None:intergenic
GTACGGTTGATGAAGCTCTT+AGG 0.375053 5_1:+3224312 Msa0711330:CDS
TGCTGTGCCTTTCTCAATCA+AGG 0.381753 5_1:-3223386 None:intergenic
ACAGAAGATACCACTTCTAA+TGG 0.382417 5_1:+3223421 Msa0711330:CDS
CCCAGACTCTACAAAATTCC+GGG 0.382504 5_1:+3222966 Msa0711330:five_prime_UTR
GTACGAGAGATTATGCAAAT+TGG 0.385327 5_1:+3226829 Msa0711330:CDS
ACCGCAGAGTTACGCTCTTT+GGG 0.385722 5_1:-3223277 None:intergenic
GACACAGATGTGAGATTGAT+TGG 0.387117 5_1:+3225545 Msa0711330:CDS
TGAGAATTGGTTTGAGTGAA+TGG 0.391106 5_1:-3222703 None:intergenic
TCGCTGTTGGGTTGGAGACT+TGG 0.396871 5_1:+3225328 Msa0711330:CDS
TGGAGGCGTGTTTGACTGTT+TGG 0.398041 5_1:-3223050 None:intergenic
TACTTGGTGGTCGATGCAAC+TGG 0.399396 5_1:-3223070 None:intergenic
GTCCCATTCGTTGCGGAGCC+CGG 0.403361 5_1:-3222984 None:intergenic
ACAGCATTAAGAGACTATAT+TGG 0.410677 5_1:+3223994 Msa0711330:CDS
GACATTATTGTTGCAAGTGT+TGG 0.413780 5_1:+3225479 Msa0711330:CDS
TGCATGCGCAAAACTTGCTT+TGG 0.418487 5_1:+3224239 Msa0711330:CDS
ATCACCATCTTGCAATAAAT+AGG 0.421091 5_1:-3225657 None:intergenic
GTGAATTTCAGTCGGTGATT+GGG 0.424558 5_1:+3225411 Msa0711330:CDS
ACCGATGAAGAAGCTCTTGA+TGG 0.431720 5_1:+3226496 Msa0711330:CDS
GGTATAATAGTTCATAGTTA+TGG 0.434212 5_1:-3222682 None:intergenic
AGCCACCTACTTGTTTGAAT+AGG 0.436759 5_1:+3227099 Msa0711330:three_prime_UTR
CTCAACTCTGGACCAACTCC+TGG 0.438434 5_1:-3226433 None:intergenic
GAACCTCATTCCATTGCAGC+TGG 0.442675 5_1:+3225692 Msa0711330:CDS
ACAACCTTAATGTTGTCGTT+TGG 0.444640 5_1:-3226920 None:intergenic
ATTGTTGCAAGTGTTGGAAC+AGG 0.446515 5_1:+3225485 Msa0711330:CDS
GAAAACAGCTACCACTTGTC+AGG 0.455616 5_1:+3225350 Msa0711330:CDS
ATTGGCTATATTAGATAAGC+TGG 0.461016 5_1:+3226886 Msa0711330:CDS
ATGTTGTCGTTTGGTAAAGT+AGG 0.462906 5_1:-3226911 None:intergenic
GGAAAATTTGGTAGGTTTGG+AGG 0.467377 5_1:+3223442 Msa0711330:CDS
AGAGAGGATCTAAACCATAC+TGG 0.468188 5_1:+3224105 Msa0711330:CDS
TTCTGGCACGTGTAAATTTG+CGG 0.470714 5_1:+3222932 Msa0711330:five_prime_UTR
TGCTTAACCTACGTCAAAGA+TGG 0.471634 5_1:+3223020 Msa0711330:five_prime_UTR
TGGAAAACATTCTTCCACTT+TGG 0.473305 5_1:+3225598 Msa0711330:CDS
TTCCGGGCTCCGCAACGAAT+GGG 0.474318 5_1:+3222982 Msa0711330:five_prime_UTR
ACAACATAACATGCGATAAG+AGG 0.476332 5_1:+3223131 Msa0711330:five_prime_UTR
GTATATGTAGTGGCTAATTG+AGG 0.478553 5_1:-3223343 None:intergenic
CTTCTAATGGAAAATTTGGT+AGG 0.480618 5_1:+3223434 Msa0711330:CDS
ACAATACCCTTGATTGAGAA+AGG 0.481846 5_1:+3223379 Msa0711330:CDS
ATCTCCTATTTATTGCAAGA+TGG 0.482125 5_1:+3225653 Msa0711330:CDS
TATTTATTGCAAGATGGTGA+TGG 0.487590 5_1:+3225659 Msa0711330:CDS
ACTTTGGCCAAAGGAGAAAT+GGG 0.488098 5_1:+3225614 Msa0711330:CDS
TAAATTGTATCCAAAGGAAA+AGG 0.488617 5_1:+3227027 Msa0711330:three_prime_UTR
GCTGGTTTAGGGTTAGATAG+TGG 0.489960 5_1:+3225578 Msa0711330:CDS
CATTTCTCCTTTGGCCAAAG+TGG 0.494631 5_1:-3225612 None:intergenic
TTACAACCACTTCTACAATA+GGG 0.494819 5_1:+3222877 Msa0711330:five_prime_UTR
CATTCTTCCACTTTGGCCAA+AGG 0.495954 5_1:+3225605 Msa0711330:CDS
ACACTTGCAACAATAATGTC+TGG 0.497623 5_1:-3225476 None:intergenic
ATTATGCCCTATTGTAGAAG+TGG 0.508895 5_1:-3222883 None:intergenic
GAGCATTACAAAAGCAAGAA+TGG 0.508962 5_1:+3224054 Msa0711330:CDS
TTGAGTTTCCACAAAGAAAG+TGG 0.510284 5_1:+3226451 Msa0711330:CDS
ATTCCGGGCTCCGCAACGAA+TGG 0.514362 5_1:+3222981 Msa0711330:five_prime_UTR
GCCACCGGTTCAGGACATCA+TGG 0.514927 5_1:+3224201 Msa0711330:CDS
GAAAATTTGGTAGGTTTGGA+GGG 0.517596 5_1:+3223443 Msa0711330:CDS
AAGGTTGTTGTAAATTGTAG+TGG 0.521105 5_1:+3226935 Msa0711330:CDS
TTGATTGGAGTTGAAGCTGC+TGG 0.521751 5_1:+3225560 Msa0711330:CDS
TTTCTCAATCAAGGGTATTG+TGG 0.524550 5_1:-3223377 None:intergenic
TCTTTGTGGAAACTCAACTC+TGG 0.527612 5_1:-3226445 None:intergenic
AAAAGCAAGAATGGTGGGAA+AGG 0.530194 5_1:+3224063 Msa0711330:CDS
AAAGCAAGAATGGTGGGAAA+GGG 0.533130 5_1:+3224064 Msa0711330:CDS
CAAGGGTATTGTGGAAGGCA+AGG 0.533424 5_1:-3223368 None:intergenic
GGAGAAATGGGTGTTTATCA+TGG 0.535396 5_1:+3225626 Msa0711330:CDS
GCTTAACCTACGTCAAAGAT+GGG 0.535508 5_1:+3223021 Msa0711330:five_prime_UTR
CGAGAGATTATGCAAATTGG+AGG 0.535793 5_1:+3226832 Msa0711330:CDS
TCCATATAAATTGTATCCAA+AGG 0.547106 5_1:+3227021 Msa0711330:three_prime_UTR
CACTTGTCAGGTTCAGCGGT+GGG 0.551258 5_1:+3225362 Msa0711330:CDS
TGATTCCAAAGTACAAACTC+AGG 0.551285 5_1:-3227126 None:intergenic
CTTTATGGCTGCCAAAGACA+TGG 0.556703 5_1:+3224272 Msa0711330:CDS
AAAAGTGTCATTACGGCCAC+CGG 0.557084 5_1:+3224186 Msa0711330:CDS
AAGCCCATGATGTCCTGAAC+CGG 0.557178 5_1:-3224205 None:intergenic
CTGTGTCTGATAGAAACTCA+TGG 0.558634 5_1:-3225529 None:intergenic
TCTAGAGGCAGCACATGCAT+TGG 0.564224 5_1:+3226868 Msa0711330:CDS
AACCTCATTCCATTGCAGCT+GGG 0.564426 5_1:+3225693 Msa0711330:CDS
TATATGTAGTGGCTAATTGA+GGG 0.565294 5_1:-3223342 None:intergenic
GCATGTGCTGCCTCTAGAGA+TGG 0.565495 5_1:-3226863 None:intergenic
CCACCGGTTCAGGACATCAT+GGG 0.569455 5_1:+3224202 Msa0711330:CDS
TCAATCAAGGGTATTGTGGA+AGG 0.569510 5_1:-3223373 None:intergenic
GATGAAGCTCTTAGGAGCTA+AGG 0.571020 5_1:+3224320 Msa0711330:CDS
TACCCAGCTGCAATGGAATG+AGG 0.571811 5_1:-3225695 None:intergenic
TACATTGGTCCCATTCGTTG+CGG 0.572793 5_1:-3222991 None:intergenic
CTCTGCGGTGGTTCAAGCAG+TGG 0.574183 5_1:+3223291 Msa0711330:CDS
AAAACTTGCTTTGGAGTGCA+CGG 0.574611 5_1:+3224248 Msa0711330:CDS
GGTTAAGCACTAATTTACAT+TGG 0.580256 5_1:-3223006 None:intergenic
TTGTACCCCATCTTTGACGT+AGG 0.582072 5_1:-3223027 None:intergenic
CGGTGATTGGGAAAGAAACA+AGG 0.584635 5_1:+3225423 Msa0711330:CDS
AGGATGGAGTACCCAGGAGT+TGG 0.585909 5_1:+3226421 Msa0711330:intron
ACCATCAAGAGCTTCTTCAT+CGG 0.586467 5_1:-3226497 None:intergenic
AAGAAACAAGGAAACAAGCA+TGG 0.587611 5_1:+3225435 Msa0711330:CDS
AAGGGTATTGTGGAAGGCAA+GGG 0.587691 5_1:-3223367 None:intergenic
TGAAATTCACGTACCATGGT+AGG 0.591953 5_1:-3225398 None:intergenic
CCACTTGTCAGGTTCAGCGG+TGG 0.592505 5_1:+3225361 Msa0711330:CDS
GCTATGATTGCCAAGCGCAT+CGG 0.597909 5_1:+3224159 Msa0711330:CDS
ATTACAAAAGCAAGAATGGT+GGG 0.599564 5_1:+3224058 Msa0711330:CDS
CTACCACTTGTCAGGTTCAG+CGG 0.602899 5_1:+3225358 Msa0711330:CDS
GCTGTGCCTTTCTCAATCAA+GGG 0.603787 5_1:-3223385 None:intergenic
TGTGACTTACCCAGCTGCAA+TGG 0.605420 5_1:-3225702 None:intergenic
TCAACTCTGGACCAACTCCT+GGG 0.607704 5_1:-3226432 None:intergenic
TGAGTTTCCACAAAGAAAGT+GGG 0.608742 5_1:+3226452 Msa0711330:CDS
CCCATGATGTCCTGAACCGG+TGG 0.609306 5_1:-3224202 None:intergenic
GATTCCAAAGTACAAACTCA+GGG 0.610136 5_1:-3227125 None:intergenic
TTTCAAAGATGCATCATCAG+AGG 0.611931 5_1:+3225301 Msa0711330:CDS
CACCACTGTATCATGCTCAA+AGG 0.613763 5_1:+3224025 Msa0711330:CDS
ACAGACAATCATCTAATGTA+CGG 0.615143 5_1:+3224295 Msa0711330:CDS
CGACTGAAATTCACGTACCA+TGG 0.615376 5_1:-3225402 None:intergenic
TGTACCTTGTAATTTACATG+CGG 0.629082 5_1:-3223218 None:intergenic
AGGCAAGGGTGTATATGTAG+TGG 0.631568 5_1:-3223353 None:intergenic
GGGTATATTTCCATCTCTAG+AGG 0.631579 5_1:+3226853 Msa0711330:CDS
TGATATATACTTGAAAAGAG+AGG 0.635009 5_1:+3224089 Msa0711330:CDS
GTTGTAAATTGTAGTGGACG+TGG 0.635806 5_1:+3226941 Msa0711330:CDS
TCACGTACCATGGTAGGACA+TGG 0.639647 5_1:-3225392 None:intergenic
ACCACATCCATGTCCTACCA+TGG 0.651627 5_1:+3225385 Msa0711330:CDS
CAAAGAGCGTAACTCTGCGG+TGG 0.651817 5_1:+3223279 Msa0711330:CDS
ACCATGGTAGGACATGGATG+TGG 0.654355 5_1:-3225386 None:intergenic
TTCCAAAGTACAAACTCAGG+GGG 0.657706 5_1:-3227123 None:intergenic
GGCCTATTCAAACAAGTAGG+TGG 0.660554 5_1:-3227101 None:intergenic
CATTACAAAAGCAAGAATGG+TGG 0.664051 5_1:+3224057 Msa0711330:CDS
ATGGCCGCATGTAAATTACA+AGG 0.665675 5_1:+3223214 Msa0711330:CDS
CATGGTACGTGAATTTCAGT+CGG 0.668535 5_1:+3225403 Msa0711330:CDS
CCACCGCTGAACCTGACAAG+TGG 0.669141 5_1:-3225361 None:intergenic
GAGAGATTATGCAAATTGGA+GGG 0.672303 5_1:+3226833 Msa0711330:CDS
ATTTACAGGATGGAGTACCC+AGG 0.682078 5_1:+3226415 Msa0711330:intron
TTGGTGGTCGATGCAACTGG+AGG 0.692375 5_1:-3223067 None:intergenic
GCCCAAAGAGCGTAACTCTG+CGG 0.693803 5_1:+3223276 Msa0711330:CDS
CTTAACCTACGTCAAAGATG+GGG 0.697575 5_1:+3223022 Msa0711330:five_prime_UTR
TGGACGTGGAGACAAAGATG+CGG 0.727021 5_1:+3226955 Msa0711330:CDS
AACCTTTGAGCATGATACAG+TGG 0.737050 5_1:-3224027 None:intergenic
ATTCCAAAGTACAAACTCAG+GGG 0.737228 5_1:-3227124 None:intergenic
TCCAAAGTACAAACTCAGGG+GGG 0.738584 5_1:-3227122 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAACTATTTATATATTC+TGG + chr5_1:3222915-3222934 Msa0711330:five_prime_UTR 10.0%
!!! TATTTTATCAGTATATAATT+TGG + chr5_1:3223671-3223690 Msa0711330:intron 10.0%
!!! TTTGAAAAGAATTTTTTTAA+GGG - chr5_1:3223848-3223867 None:intergenic 10.0%
!!! ATTTGAAAAGAATTTTTTTA+AGG - chr5_1:3223849-3223868 None:intergenic 10.0%
!! CTAAAATTTAGATAATATAT+AGG + chr5_1:3223897-3223916 Msa0711330:intron 10.0%
!! TGTTCAATAATTAAAATTAA+AGG - chr5_1:3224363-3224382 None:intergenic 10.0%
!! ATTAAACTTATTGTAAAAAA+TGG - chr5_1:3224462-3224481 None:intergenic 10.0%
!!! ATAAAATTGATAACAATTAT+TGG - chr5_1:3225728-3225747 None:intergenic 10.0%
!!! TATTAAATAGTTTAATTTAG+AGG + chr5_1:3226061-3226080 Msa0711330:intron 10.0%
!!! ATTAAATAGTTTAATTTAGA+GGG + chr5_1:3226062-3226081 Msa0711330:intron 10.0%
!!! TATATACACAAATTTTTATT+TGG - chr5_1:3226291-3226310 None:intergenic 10.0%
!! GTAATAAATGATTAATATAT+TGG + chr5_1:3227398-3227417 Msa0711330:three_prime_UTR 10.0%
!! TTAAATTAATTTCAAGATAC+TGG - chr5_1:3223647-3223666 None:intergenic 15.0%
!!! AAAAATTATTGGATTCTTTT+AGG - chr5_1:3224400-3224419 None:intergenic 15.0%
!! TTTAACATTCTCATTTAATT+TGG - chr5_1:3224626-3224645 None:intergenic 15.0%
!! AATTAAATGAGAATGTTAAA+CGG + chr5_1:3224626-3224645 Msa0711330:intron 15.0%
!! AATTACTTGATCAAAAATAA+CGG + chr5_1:3224711-3224730 Msa0711330:intron 15.0%
!! TAATTAAATTGAAATAGGAT+AGG - chr5_1:3225861-3225880 None:intergenic 15.0%
!! ATCACTAATTAAATTGAAAT+AGG - chr5_1:3225866-3225885 None:intergenic 15.0%
!!! TATATGCACAAATTTTTATT+TGG - chr5_1:3226220-3226239 None:intergenic 15.0%
!!! AATTTTTATTTGGAAAAAGT+TGG - chr5_1:3226210-3226229 None:intergenic 15.0%
!! AATGATTTAATAAACAATCA+TGG + chr5_1:3226351-3226370 Msa0711330:intron 15.0%
!!! TTTTTAAATTATTTACAGGA+TGG + chr5_1:3226405-3226424 Msa0711330:intron 15.0%
!! AGAAAAAAAAAACTTAAATC+AGG - chr5_1:3227221-3227240 None:intergenic 15.0%
!!! TAAGTTTTTTTTTTCTTTGT+TGG + chr5_1:3227225-3227244 Msa0711330:three_prime_UTR 15.0%
!!! AAGTTTTTTTTTTCTTTGTT+GGG + chr5_1:3227226-3227245 Msa0711330:three_prime_UTR 15.0%
!! AAACCAATTCATAGAAAAAA+AGG + chr5_1:3223249-3223268 Msa0711330:CDS 20.0%
!!! TTTCAGGTAATTTGTTAATT+AGG + chr5_1:3223544-3223563 Msa0711330:intron 20.0%
!!! TTCAGGTAATTTGTTAATTA+GGG + chr5_1:3223545-3223564 Msa0711330:intron 20.0%
!! TATGTTTGTCTAACTAAAAT+TGG - chr5_1:3223818-3223837 None:intergenic 20.0%
!!! TTATGTTATTTGATAGTTTG+AGG - chr5_1:3223944-3223963 None:intergenic 20.0%
!! AATGTCTTTATCTTTATGTT+TGG - chr5_1:3225178-3225197 None:intergenic 20.0%
!! AATAATGTATGTAAACATGT+AGG + chr5_1:3225259-3225278 Msa0711330:intron 20.0%
!!! GTAATGTCTATGTTTTAATT+AGG - chr5_1:3226537-3226556 None:intergenic 20.0%
!! AAAAATTAAACAACTCACAA+AGG - chr5_1:3227195-3227214 None:intergenic 20.0%
!! TGATTTCATGTTGAAATATT+TGG + chr5_1:3227278-3227297 Msa0711330:three_prime_UTR 20.0%
!! GATTTCATGTTGAAATATTT+GGG + chr5_1:3227279-3227298 Msa0711330:three_prime_UTR 20.0%
!!! ATGAATTTGTTGAGTTTTAT+GGG + chr5_1:3227311-3227330 Msa0711330:three_prime_UTR 20.0%
!!! AAGTGGTTGTAAGTTTTTTT+AGG - chr5_1:3222869-3222888 None:intergenic 25.0%
!!! CAACACCTTTTATTTATACT+TGG - chr5_1:3223089-3223108 None:intergenic 25.0%
! AAAAAACACAAACACAAACA+TGG + chr5_1:3223195-3223214 Msa0711330:exon 25.0%
!!! CTACCTTTTTTTCTATGAAT+TGG - chr5_1:3223255-3223274 None:intergenic 25.0%
! AACAAGTGATTAAACTCTAT+TGG - chr5_1:3223721-3223740 None:intergenic 25.0%
! ATAAAAATAATTGTTCCCAC+AGG + chr5_1:3223960-3223979 Msa0711330:intron 25.0%
!!! TCTCTTTTCAAGTATATATC+AGG - chr5_1:3224090-3224109 None:intergenic 25.0%
! TGATATATACTTGAAAAGAG+AGG + chr5_1:3224089-3224108 Msa0711330:CDS 25.0%
!!! ATTATTGGATTCTTTTAGGT+AGG - chr5_1:3224396-3224415 None:intergenic 25.0%
! AAAATGGAGAAGACAATTAT+TGG - chr5_1:3224446-3224465 None:intergenic 25.0%
! TGAAAAAATCGTGTAAAATG+AGG - chr5_1:3224493-3224512 None:intergenic 25.0%
!!! TCCTCAATCATTGTTTTATT+TGG + chr5_1:3224514-3224533 Msa0711330:intron 25.0%
! TTTATTTGGCAAAATTTACG+TGG + chr5_1:3224528-3224547 Msa0711330:intron 25.0%
!!! AATTTTCATGCCTCTAAAAA+TGG - chr5_1:3224907-3224926 None:intergenic 25.0%
!!! ACCATTTTATTGATTCATCT+AGG + chr5_1:3225097-3225116 Msa0711330:intron 25.0%
!!! CCATTTTATTGATTCATCTA+GGG + chr5_1:3225098-3225117 Msa0711330:intron 25.0%
! TCTTTATCTTTATGTTTGGA+AGG - chr5_1:3225174-3225193 None:intergenic 25.0%
!! GAAAGTGATTTTGTGTTTTA+TGG + chr5_1:3226008-3226027 Msa0711330:intron 25.0%
!!! GGAAAAAGTTGATCTTTTTT+TGG - chr5_1:3226199-3226218 None:intergenic 25.0%
! ATCAAATGATGGTCTAATTT+GGG - chr5_1:3226321-3226340 None:intergenic 25.0%
! AATCAAATGATGGTCTAATT+TGG - chr5_1:3226322-3226341 None:intergenic 25.0%
! ACCATCATTTGATTATTGTA+GGG + chr5_1:3226328-3226347 Msa0711330:intron 25.0%
! AAAACAATGGAGAGAAAAAA+AGG - chr5_1:3226681-3226700 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr5_1:3226694-3226713 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG - chr5_1:3226707-3226726 None:intergenic 25.0%
! AATAAGAAGTGAGAAAAACA+AGG + chr5_1:3226706-3226725 Msa0711330:intron 25.0%
! ACTGTTTAAATATTTGTGCA+TGG - chr5_1:3226787-3226806 None:intergenic 25.0%
! TCCATATAAATTGTATCCAA+AGG + chr5_1:3227021-3227040 Msa0711330:three_prime_UTR 25.0%
! TCCTTTGGATACAATTTATA+TGG - chr5_1:3227025-3227044 None:intergenic 25.0%
! TAAATTGTATCCAAAGGAAA+AGG + chr5_1:3227027-3227046 Msa0711330:three_prime_UTR 25.0%
!!! GATGAATTTGTTGAGTTTTA+TGG + chr5_1:3227310-3227329 Msa0711330:three_prime_UTR 25.0%
!! TTTCTGTGAGTATTGAGAAT+TGG - chr5_1:3222719-3222738 None:intergenic 30.0%
AGCATAAATCAAATGAGCAA+TGG - chr5_1:3222760-3222779 None:intergenic 30.0%
TTACAACCACTTCTACAATA+GGG + chr5_1:3222877-3222896 Msa0711330:five_prime_UTR 30.0%
GGTTAAGCACTAATTTACAT+TGG - chr5_1:3223009-3223028 None:intergenic 30.0%
GACCACCAAGTATAAATAAA+AGG + chr5_1:3223081-3223100 Msa0711330:five_prime_UTR 30.0%
!! CACCTTTTATTTATACTTGG+TGG - chr5_1:3223086-3223105 None:intergenic 30.0%
!!! TGTGTTTGTGTTTTTTGTGT+TGG - chr5_1:3223191-3223210 None:intergenic 30.0%
TGTACCTTGTAATTTACATG+CGG - chr5_1:3223221-3223240 None:intergenic 30.0%
TATATGTAGTGGCTAATTGA+GGG - chr5_1:3223345-3223364 None:intergenic 30.0%
ACCACTTCTAATGGAAAATT+TGG + chr5_1:3223430-3223449 Msa0711330:CDS 30.0%
! ACCAAATTTTCCATTAGAAG+TGG - chr5_1:3223434-3223453 None:intergenic 30.0%
CTTCTAATGGAAAATTTGGT+AGG + chr5_1:3223434-3223453 Msa0711330:CDS 30.0%
AATGGAAAATTTGGTAGGTT+TGG + chr5_1:3223439-3223458 Msa0711330:CDS 30.0%
! AGGAATTGAATCTCGATTTT+TGG + chr5_1:3223593-3223612 Msa0711330:intron 30.0%
ACAGCATTAAGAGACTATAT+TGG + chr5_1:3223994-3224013 Msa0711330:CDS 30.0%
ATTACAAAAGCAAGAATGGT+GGG + chr5_1:3224058-3224077 Msa0711330:CDS 30.0%
ACAGACAATCATCTAATGTA+CGG + chr5_1:3224295-3224314 Msa0711330:CDS 30.0%
GCCAAATAAAACAATGATTG+AGG - chr5_1:3224518-3224537 None:intergenic 30.0%
TATGGGACCTATCTATAAAA+TGG - chr5_1:3224559-3224578 None:intergenic 30.0%
! ATTTGGTTGATTAGTTAAGC+AGG - chr5_1:3224609-3224628 None:intergenic 30.0%
!! ATGCTTTGAGAATATCTTAG+TGG + chr5_1:3224836-3224855 Msa0711330:intron 30.0%
CTTGAATTAAGCTTAATGGA+TGG + chr5_1:3224979-3224998 Msa0711330:intron 30.0%
CCCTAGATGAATCAATAAAA+TGG - chr5_1:3225101-3225120 None:intergenic 30.0%
GAAACAAGCATGGAAAAAAT+GGG + chr5_1:3225445-3225464 Msa0711330:CDS 30.0%
AAACAAGCATGGAAAAAATG+GGG + chr5_1:3225446-3225465 Msa0711330:CDS 30.0%
ATCTCCTATTTATTGCAAGA+TGG + chr5_1:3225653-3225672 Msa0711330:CDS 30.0%
ATCACCATCTTGCAATAAAT+AGG - chr5_1:3225660-3225679 None:intergenic 30.0%
TATTTATTGCAAGATGGTGA+TGG + chr5_1:3225659-3225678 Msa0711330:CDS 30.0%
CCACAAAACAATAATACTAC+TGG - chr5_1:3225812-3225831 None:intergenic 30.0%
!! CCAGTAGTATTATTGTTTTG+TGG + chr5_1:3225809-3225828 Msa0711330:intron 30.0%
GCATAAACATAAAATATGCC+CGG + chr5_1:3226153-3226172 Msa0711330:intron 30.0%
CATAAACATAAAATATGCCC+GGG + chr5_1:3226154-3226173 Msa0711330:intron 30.0%
ATAAACATAAAATATGCCCG+GGG + chr5_1:3226155-3226174 Msa0711330:intron 30.0%
!!! AGTTGATCTTTTTTTGGTAG+TGG - chr5_1:3226193-3226212 None:intergenic 30.0%
!!! GGAAAAAGTTGGTCTTTTTT+TGG - chr5_1:3226270-3226289 None:intergenic 30.0%
GACCATCATTTGATTATTGT+AGG + chr5_1:3226327-3226346 Msa0711330:intron 30.0%
TCCCTACAATAATCAAATGA+TGG - chr5_1:3226332-3226351 None:intergenic 30.0%
GTCTAAAAGTTGTCAAAAAG+TGG - chr5_1:3226614-3226633 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG + chr5_1:3226732-3226751 Msa0711330:intron 30.0%
ATTGGCTATATTAGATAAGC+TGG + chr5_1:3226886-3226905 Msa0711330:CDS 30.0%
TTTACCAAACGACAACATTA+AGG + chr5_1:3226916-3226935 Msa0711330:CDS 30.0%
AAGGTTGTTGTAAATTGTAG+TGG + chr5_1:3226935-3226954 Msa0711330:CDS 30.0%
! TAGTGTTTTTCCTTTTCCTT+TGG - chr5_1:3227040-3227059 None:intergenic 30.0%
!! TGAGAATTGGTTTGAGTGAA+TGG - chr5_1:3222706-3222725 None:intergenic 35.0%
CTTACAACCACTTCTACAAT+AGG + chr5_1:3222876-3222895 Msa0711330:five_prime_UTR 35.0%
ATTATGCCCTATTGTAGAAG+TGG - chr5_1:3222886-3222905 None:intergenic 35.0%
ACAACATAACATGCGATAAG+AGG + chr5_1:3223131-3223150 Msa0711330:five_prime_UTR 35.0%
GGTTACTCGTGATAAGTTTA+AGG + chr5_1:3223312-3223331 Msa0711330:CDS 35.0%
GTATATGTAGTGGCTAATTG+AGG - chr5_1:3223346-3223365 None:intergenic 35.0%
!! TTTCTCAATCAAGGGTATTG+TGG - chr5_1:3223380-3223399 None:intergenic 35.0%
ACAATACCCTTGATTGAGAA+AGG + chr5_1:3223379-3223398 Msa0711330:CDS 35.0%
ACAGAAGATACCACTTCTAA+TGG + chr5_1:3223421-3223440 Msa0711330:CDS 35.0%
GAAAATTTGGTAGGTTTGGA+GGG + chr5_1:3223443-3223462 Msa0711330:CDS 35.0%
AAGCACATTACAAGTGTTTC+TGG - chr5_1:3223478-3223497 None:intergenic 35.0%
! TTTTAAACTCAGCTTCAAGC+TGG - chr5_1:3223504-3223523 None:intergenic 35.0%
TTACCTGAAAAACATCATCG+CGG - chr5_1:3223534-3223553 None:intergenic 35.0%
GAGCATTACAAAAGCAAGAA+TGG + chr5_1:3224054-3224073 Msa0711330:CDS 35.0%
CATTACAAAAGCAAGAATGG+TGG + chr5_1:3224057-3224076 Msa0711330:CDS 35.0%
! GGTCCTACCATTTTATAGAT+AGG + chr5_1:3224549-3224568 Msa0711330:intron 35.0%
GGACCTATCTATAAAATGGT+AGG - chr5_1:3224555-3224574 None:intergenic 35.0%
GTTACGAGGATCATAACTAT+GGG - chr5_1:3224576-3224595 None:intergenic 35.0%
TTGAGAATATCTTAGTGGCA+CGG + chr5_1:3224841-3224860 Msa0711330:intron 35.0%
CTCGCTTGAATTAAGCTTAA+TGG + chr5_1:3224975-3224994 Msa0711330:intron 35.0%
! GAATTAAGCTTAATGGATGG+AGG + chr5_1:3224982-3225001 Msa0711330:intron 35.0%
! ATGTAGGTTGAAGCTGTAAA+TGG + chr5_1:3225275-3225294 Msa0711330:intron 35.0%
TTTCAAAGATGCATCATCAG+AGG + chr5_1:3225301-3225320 Msa0711330:CDS 35.0%
AAGAAACAAGGAAACAAGCA+TGG + chr5_1:3225435-3225454 Msa0711330:CDS 35.0%
GGAAACAAGCATGGAAAAAA+TGG + chr5_1:3225444-3225463 Msa0711330:CDS 35.0%
ACACTTGCAACAATAATGTC+TGG - chr5_1:3225479-3225498 None:intergenic 35.0%
GACATTATTGTTGCAAGTGT+TGG + chr5_1:3225479-3225498 Msa0711330:CDS 35.0%
TGGAAAACATTCTTCCACTT+TGG + chr5_1:3225598-3225617 Msa0711330:CDS 35.0%
ATAAACACCCATTTCTCCTT+TGG - chr5_1:3225624-3225643 None:intergenic 35.0%
!!! AGTTGGTCTTTTTTTGGTAG+TGG - chr5_1:3226264-3226283 None:intergenic 35.0%
TTGAGTTTCCACAAAGAAAG+TGG + chr5_1:3226451-3226470 Msa0711330:CDS 35.0%
TGAGTTTCCACAAAGAAAGT+GGG + chr5_1:3226452-3226471 Msa0711330:CDS 35.0%
AGAGAAAAAAAGGAAGAGAG+AGG - chr5_1:3226671-3226690 None:intergenic 35.0%
GTACGAGAGATTATGCAAAT+TGG + chr5_1:3226829-3226848 Msa0711330:CDS 35.0%
GAGAGATTATGCAAATTGGA+GGG + chr5_1:3226833-3226852 Msa0711330:CDS 35.0%
! ATGTTGTCGTTTGGTAAAGT+AGG - chr5_1:3226914-3226933 None:intergenic 35.0%
ACAACCTTAATGTTGTCGTT+TGG - chr5_1:3226923-3226942 None:intergenic 35.0%
ATTCCAAAGTACAAACTCAG+GGG - chr5_1:3227127-3227146 None:intergenic 35.0%
GATTCCAAAGTACAAACTCA+GGG - chr5_1:3227128-3227147 None:intergenic 35.0%
TGATTCCAAAGTACAAACTC+AGG - chr5_1:3227129-3227148 None:intergenic 35.0%
TTCTGGCACGTGTAAATTTG+CGG + chr5_1:3222932-3222951 Msa0711330:five_prime_UTR 40.0%
TGCTTAACCTACGTCAAAGA+TGG + chr5_1:3223020-3223039 Msa0711330:five_prime_UTR 40.0%
GCTTAACCTACGTCAAAGAT+GGG + chr5_1:3223021-3223040 Msa0711330:five_prime_UTR 40.0%
CTTAACCTACGTCAAAGATG+GGG + chr5_1:3223022-3223041 Msa0711330:five_prime_UTR 40.0%
ATGGCCGCATGTAAATTACA+AGG + chr5_1:3223214-3223233 Msa0711330:CDS 40.0%
!! TCAATCAAGGGTATTGTGGA+AGG - chr5_1:3223376-3223395 None:intergenic 40.0%
GGAAAATTTGGTAGGTTTGG+AGG + chr5_1:3223442-3223461 Msa0711330:CDS 40.0%
GAAAGATGATACCATGTCCA+AGG + chr5_1:3223569-3223588 Msa0711330:intron 40.0%
TTCAATTCCTACCTTGGACA+TGG - chr5_1:3223583-3223602 None:intergenic 40.0%
TCGAGATTCAATTCCTACCT+TGG - chr5_1:3223589-3223608 None:intergenic 40.0%
AACCTTTGAGCATGATACAG+TGG - chr5_1:3224030-3224049 None:intergenic 40.0%
! AAAAGCAAGAATGGTGGGAA+AGG + chr5_1:3224063-3224082 Msa0711330:CDS 40.0%
! AAAGCAAGAATGGTGGGAAA+GGG + chr5_1:3224064-3224083 Msa0711330:CDS 40.0%
AGAGAGGATCTAAACCATAC+TGG + chr5_1:3224105-3224124 Msa0711330:CDS 40.0%
!! CGGTCGAAAAAGTGTCATTA+CGG + chr5_1:3224179-3224198 Msa0711330:CDS 40.0%
!! AAAACTTGCTTTGGAGTGCA+CGG + chr5_1:3224248-3224267 Msa0711330:CDS 40.0%
TGATTGTCTGTCCATGTCTT+TGG - chr5_1:3224286-3224305 None:intergenic 40.0%
GGTTACGAGGATCATAACTA+TGG - chr5_1:3224577-3224596 None:intergenic 40.0%
AGTTATGATCCTCGTAACCA+AGG + chr5_1:3224578-3224597 Msa0711330:intron 40.0%
TAGTTAAGCAGGACTTTCCT+TGG - chr5_1:3224598-3224617 None:intergenic 40.0%
AATGTTAAACGGTGCCCTTT+GGG + chr5_1:3224637-3224656 Msa0711330:intron 40.0%
TTGCTTAACCAATGCCCAAA+GGG - chr5_1:3224654-3224673 None:intergenic 40.0%
TTTGCTTAACCAATGCCCAA+AGG - chr5_1:3224655-3224674 None:intergenic 40.0%
!! ACCAAATGGGTCTTGTTAAC+CGG - chr5_1:3224804-3224823 None:intergenic 40.0%
AAGACCCATTTGGTCCTAAA+GGG + chr5_1:3224810-3224829 Msa0711330:intron 40.0%
TGAGAATATCTTAGTGGCAC+GGG + chr5_1:3224842-3224861 Msa0711330:intron 40.0%
!! TATCCGTGCACCATTTTTAG+AGG + chr5_1:3224894-3224913 Msa0711330:intron 40.0%
! ATGCCTCTAAAAATGGTGCA+CGG - chr5_1:3224900-3224919 None:intergenic 40.0%
GTTATATGATCGATGCTGTG+TGG + chr5_1:3225129-3225148 Msa0711330:intron 40.0%
TGAAATTCACGTACCATGGT+AGG - chr5_1:3225401-3225420 None:intergenic 40.0%
CATGGTACGTGAATTTCAGT+CGG + chr5_1:3225403-3225422 Msa0711330:CDS 40.0%
GTGAATTTCAGTCGGTGATT+GGG + chr5_1:3225411-3225430 Msa0711330:CDS 40.0%
!! ATTGTTGCAAGTGTTGGAAC+AGG + chr5_1:3225485-3225504 Msa0711330:CDS 40.0%
GGAACAGGTTCAAATGCTTT+AGG + chr5_1:3225500-3225519 Msa0711330:CDS 40.0%
CTGTGTCTGATAGAAACTCA+TGG - chr5_1:3225532-3225551 None:intergenic 40.0%
GACACAGATGTGAGATTGAT+TGG + chr5_1:3225545-3225564 Msa0711330:CDS 40.0%
ACTTTGGCCAAAGGAGAAAT+GGG + chr5_1:3225614-3225633 Msa0711330:CDS 40.0%
GGAGAAATGGGTGTTTATCA+TGG + chr5_1:3225626-3225645 Msa0711330:CDS 40.0%
TCACGAGGACAATCAAAAGT+TGG - chr5_1:3226108-3226127 None:intergenic 40.0%
!!! ATCTTTTTTTGGTAGTGGCC+GGG - chr5_1:3226188-3226207 None:intergenic 40.0%
!!! GATCTTTTTTTGGTAGTGGC+CGG - chr5_1:3226189-3226208 None:intergenic 40.0%
!!! GTCTTTTTTTGGTAGTGGCA+GGG - chr5_1:3226259-3226278 None:intergenic 40.0%
TCTTTGTGGAAACTCAACTC+TGG - chr5_1:3226448-3226467 None:intergenic 40.0%
ACCATCAAGAGCTTCTTCAT+CGG - chr5_1:3226500-3226519 None:intergenic 40.0%
CGAGAGATTATGCAAATTGG+AGG + chr5_1:3226832-3226851 Msa0711330:CDS 40.0%
GGGTATATTTCCATCTCTAG+AGG + chr5_1:3226853-3226872 Msa0711330:CDS 40.0%
!! GTTGTAAATTGTAGTGGACG+TGG + chr5_1:3226941-3226960 Msa0711330:CDS 40.0%
AGCCACCTACTTGTTTGAAT+AGG + chr5_1:3227099-3227118 Msa0711330:three_prime_UTR 40.0%
TTCCAAAGTACAAACTCAGG+GGG - chr5_1:3227126-3227145 None:intergenic 40.0%
GCCCAGACTCTACAAAATTC+CGG + chr5_1:3222965-3222984 Msa0711330:five_prime_UTR 45.0%
! CCCGGAATTTTGTAGAGTCT+GGG - chr5_1:3222969-3222988 None:intergenic 45.0%
CCCAGACTCTACAAAATTCC+GGG + chr5_1:3222966-3222985 Msa0711330:five_prime_UTR 45.0%
TACATTGGTCCCATTCGTTG+CGG - chr5_1:3222994-3223013 None:intergenic 45.0%
TTGTACCCCATCTTTGACGT+AGG - chr5_1:3223030-3223049 None:intergenic 45.0%
! AGGCAAGGGTGTATATGTAG+TGG - chr5_1:3223356-3223375 None:intergenic 45.0%
!! AAGGGTATTGTGGAAGGCAA+GGG - chr5_1:3223370-3223389 None:intergenic 45.0%
GCTGTGCCTTTCTCAATCAA+GGG - chr5_1:3223388-3223407 None:intergenic 45.0%
TGCTGTGCCTTTCTCAATCA+AGG - chr5_1:3223389-3223408 None:intergenic 45.0%
CTGAAAAACATCATCGCGGA+GGG - chr5_1:3223530-3223549 None:intergenic 45.0%
GATGATACCATGTCCAAGGT+AGG + chr5_1:3223573-3223592 Msa0711330:intron 45.0%
CACCACTGTATCATGCTCAA+AGG + chr5_1:3224025-3224044 Msa0711330:CDS 45.0%
TCATCTTGTGAGAGCCAGTA+TGG - chr5_1:3224122-3224141 None:intergenic 45.0%
!! AAAAGTGTCATTACGGCCAC+CGG + chr5_1:3224186-3224205 Msa0711330:CDS 45.0%
! TGCATGCGCAAAACTTGCTT+TGG + chr5_1:3224239-3224258 Msa0711330:CDS 45.0%
! TTTGGAGTGCACGGTCTTTA+TGG + chr5_1:3224257-3224276 Msa0711330:CDS 45.0%
CTTTATGGCTGCCAAAGACA+TGG + chr5_1:3224272-3224291 Msa0711330:CDS 45.0%
!! GTACGGTTGATGAAGCTCTT+AGG + chr5_1:3224312-3224331 Msa0711330:CDS 45.0%
GATGAAGCTCTTAGGAGCTA+AGG + chr5_1:3224320-3224339 Msa0711330:CDS 45.0%
GAATGTTAAACGGTGCCCTT+TGG + chr5_1:3224636-3224655 Msa0711330:intron 45.0%
CAAGACCCATTTGGTCCTAA+AGG + chr5_1:3224809-3224828 Msa0711330:intron 45.0%
AGACCCATTTGGTCCTAAAG+GGG + chr5_1:3224811-3224830 Msa0711330:intron 45.0%
ATTCCTTCCATCCATGCTCA+GGG - chr5_1:3224871-3224890 None:intergenic 45.0%
ATGATCGATGCTGTGTGGTT+TGG + chr5_1:3225134-3225153 Msa0711330:intron 45.0%
! ATCAGAGGCTTTTCGCTGTT+GGG + chr5_1:3225316-3225335 Msa0711330:CDS 45.0%
GAAAACAGCTACCACTTGTC+AGG + chr5_1:3225350-3225369 Msa0711330:CDS 45.0%
CGACTGAAATTCACGTACCA+TGG - chr5_1:3225405-3225424 None:intergenic 45.0%
CGTGAATTTCAGTCGGTGAT+TGG + chr5_1:3225410-3225429 Msa0711330:CDS 45.0%
CGGTGATTGGGAAAGAAACA+AGG + chr5_1:3225423-3225442 Msa0711330:CDS 45.0%
CAAGCATGGAAAAAATGGGG+AGG + chr5_1:3225449-3225468 Msa0711330:CDS 45.0%
TTGATTGGAGTTGAAGCTGC+TGG + chr5_1:3225560-3225579 Msa0711330:CDS 45.0%
!! GAGTTGAAGCTGCTGGTTTA+GGG + chr5_1:3225567-3225586 Msa0711330:CDS 45.0%
! GCTGGTTTAGGGTTAGATAG+TGG + chr5_1:3225578-3225597 Msa0711330:CDS 45.0%
CATTCTTCCACTTTGGCCAA+AGG + chr5_1:3225605-3225624 Msa0711330:CDS 45.0%
CATTTCTCCTTTGGCCAAAG+TGG - chr5_1:3225615-3225634 None:intergenic 45.0%
CACTTTGGCCAAAGGAGAAA+TGG + chr5_1:3225613-3225632 Msa0711330:CDS 45.0%
AACCTCATTCCATTGCAGCT+GGG + chr5_1:3225693-3225712 Msa0711330:CDS 45.0%
!!! TCTTTTTTTGGTAGTGGCCG+GGG - chr5_1:3226187-3226206 None:intergenic 45.0%
!!! GGTCTTTTTTTGGTAGTGGC+AGG - chr5_1:3226260-3226279 None:intergenic 45.0%
! ATTTACAGGATGGAGTACCC+AGG + chr5_1:3226415-3226434 Msa0711330:intron 45.0%
ACCGATGAAGAAGCTCTTGA+TGG + chr5_1:3226496-3226515 Msa0711330:CDS 45.0%
GGCCTATTCAAACAAGTAGG+TGG - chr5_1:3227104-3227123 None:intergenic 45.0%
TCCAAAGTACAAACTCAGGG+GGG - chr5_1:3227125-3227144 None:intergenic 45.0%
!!! ATATGTTTTTAAATTTAAAT+TGG - chr5_1:3223873-3223892 None:intergenic 5.0%
!! TCAAAAAAAAAAAAAATTAT+TGG - chr5_1:3224411-3224430 None:intergenic 5.0%
!!! TAATTATATAATGATTATTT+TGG - chr5_1:3225235-3225254 None:intergenic 5.0%
!!! TTAAAAAAATAATTTTTCAT+TGG + chr5_1:3225964-3225983 Msa0711330:intron 5.0%
!!! TTTTTTTTTAAATTATTTAC+AGG + chr5_1:3226401-3226420 Msa0711330:intron 5.0%
! GCCCGGAATTTTGTAGAGTC+TGG - chr5_1:3222970-3222989 None:intergenic 50.0%
! TGGAGGCGTGTTTGACTGTT+TGG - chr5_1:3223053-3223072 None:intergenic 50.0%
! TACTTGGTGGTCGATGCAAC+TGG - chr5_1:3223073-3223092 None:intergenic 50.0%
ACCGCAGAGTTACGCTCTTT+GGG - chr5_1:3223280-3223299 None:intergenic 50.0%
!! CAAGGGTATTGTGGAAGGCA+AGG - chr5_1:3223371-3223390 None:intergenic 50.0%
CCTGAAAAACATCATCGCGG+AGG - chr5_1:3223531-3223550 None:intergenic 50.0%
! CCTCCGCGATGATGTTTTTC+AGG + chr5_1:3223528-3223547 Msa0711330:CDS 50.0%
GCTATGATTGCCAAGCGCAT+CGG + chr5_1:3224159-3224178 Msa0711330:CDS 50.0%
!!! ACTTTTTCGACCGATGCGCT+TGG - chr5_1:3224172-3224191 None:intergenic 50.0%
AAGCCCATGATGTCCTGAAC+CGG - chr5_1:3224208-3224227 None:intergenic 50.0%
CAGGACTTTCCTTGGTTACG+AGG - chr5_1:3224590-3224609 None:intergenic 50.0%
GCCGGTTAACAAGACCCATT+TGG + chr5_1:3224800-3224819 Msa0711330:intron 50.0%
!! TCGCCCCTTTAGGACCAAAT+GGG - chr5_1:3224817-3224836 None:intergenic 50.0%
!! ATCGCCCCTTTAGGACCAAA+TGG - chr5_1:3224818-3224837 None:intergenic 50.0%
!! TCTCAAAGCATCGCCCCTTT+AGG - chr5_1:3224827-3224846 None:intergenic 50.0%
CATTCCTTCCATCCATGCTC+AGG - chr5_1:3224872-3224891 None:intergenic 50.0%
CTGAGCATGGATGGAAGGAA+TGG + chr5_1:3224870-3224889 Msa0711330:intron 50.0%
! ATCGATGCTGTGTGGTTTGG+TGG + chr5_1:3225137-3225156 Msa0711330:intron 50.0%
!! TCGATGCTGTGTGGTTTGGT+GGG + chr5_1:3225138-3225157 Msa0711330:intron 50.0%
! CATCAGAGGCTTTTCGCTGT+TGG + chr5_1:3225315-3225334 Msa0711330:CDS 50.0%
CTACCACTTGTCAGGTTCAG+CGG + chr5_1:3225358-3225377 Msa0711330:CDS 50.0%
ACCACATCCATGTCCTACCA+TGG + chr5_1:3225385-3225404 Msa0711330:CDS 50.0%
ACCATGGTAGGACATGGATG+TGG - chr5_1:3225389-3225408 None:intergenic 50.0%
TCACGTACCATGGTAGGACA+TGG - chr5_1:3225395-3225414 None:intergenic 50.0%
!! GGAGTTGAAGCTGCTGGTTT+AGG + chr5_1:3225566-3225585 Msa0711330:CDS 50.0%
GAACCTCATTCCATTGCAGC+TGG + chr5_1:3225692-3225711 Msa0711330:CDS 50.0%
TACCCAGCTGCAATGGAATG+AGG - chr5_1:3225698-3225717 None:intergenic 50.0%
TGTGACTTACCCAGCTGCAA+TGG - chr5_1:3225705-3225724 None:intergenic 50.0%
TGAGCGTAGCTCAGTTGGTT+GGG + chr5_1:3226125-3226144 Msa0711330:intron 50.0%
TCAACTCTGGACCAACTCCT+GGG - chr5_1:3226435-3226454 None:intergenic 50.0%
TCTAGAGGCAGCACATGCAT+TGG + chr5_1:3226868-3226887 Msa0711330:CDS 50.0%
TGGACGTGGAGACAAAGATG+CGG + chr5_1:3226955-3226974 Msa0711330:CDS 50.0%
GGGGGCCTATTCAAACAAGT+AGG - chr5_1:3227107-3227126 None:intergenic 50.0%
! TTGGTGGTCGATGCAACTGG+AGG - chr5_1:3223070-3223089 None:intergenic 55.0%
! GCCCAAAGAGCGTAACTCTG+CGG + chr5_1:3223276-3223295 Msa0711330:CDS 55.0%
CACCGCAGAGTTACGCTCTT+TGG - chr5_1:3223281-3223300 None:intergenic 55.0%
! CAAAGAGCGTAACTCTGCGG+TGG + chr5_1:3223279-3223298 Msa0711330:CDS 55.0%
!! CTGTTGCTAGCTCTGCCTGT+GGG - chr5_1:3223978-3223997 None:intergenic 55.0%
!! CCACCGGTTCAGGACATCAT+GGG + chr5_1:3224202-3224221 Msa0711330:CDS 55.0%
AAACGGTGCCCTTTGGGCAT+TGG + chr5_1:3224643-3224662 Msa0711330:intron 55.0%
TTGTTAACCGGCGCCTCTTG+GGG - chr5_1:3224792-3224811 None:intergenic 55.0%
CTTGTTAACCGGCGCCTCTT+GGG - chr5_1:3224793-3224812 None:intergenic 55.0%
TCTTGTTAACCGGCGCCTCT+TGG - chr5_1:3224794-3224813 None:intergenic 55.0%
TAGCCCTGAGCATGGATGGA+AGG + chr5_1:3224865-3224884 Msa0711330:intron 55.0%
!! CGATGCTGTGTGGTTTGGTG+GGG + chr5_1:3225139-3225158 Msa0711330:intron 55.0%
!! GATGCTGTGTGGTTTGGTGG+GGG + chr5_1:3225140-3225159 Msa0711330:intron 55.0%
! GAGGCTTTTCGCTGTTGGGT+TGG + chr5_1:3225320-3225339 Msa0711330:CDS 55.0%
!! TCGCTGTTGGGTTGGAGACT+TGG + chr5_1:3225328-3225347 Msa0711330:CDS 55.0%
CACTTGTCAGGTTCAGCGGT+GGG + chr5_1:3225362-3225381 Msa0711330:CDS 55.0%
GTGAGCGTAGCTCAGTTGGT+TGG + chr5_1:3226124-3226143 Msa0711330:intron 55.0%
! AGGATGGAGTACCCAGGAGT+TGG + chr5_1:3226421-3226440 Msa0711330:intron 55.0%
CTCAACTCTGGACCAACTCC+TGG - chr5_1:3226436-3226455 None:intergenic 55.0%
CTGCACGCCCACTTTCTTTG+TGG - chr5_1:3226462-3226481 None:intergenic 55.0%
! GCATGTGCTGCCTCTAGAGA+TGG - chr5_1:3226866-3226885 None:intergenic 55.0%
GCCCCCCTGAGTTTGTACTT+TGG + chr5_1:3227121-3227140 Msa0711330:three_prime_UTR 55.0%
ATTCCGGGCTCCGCAACGAA+TGG + chr5_1:3222981-3223000 Msa0711330:five_prime_UTR 60.0%
TTCCGGGCTCCGCAACGAAT+GGG + chr5_1:3222982-3223001 Msa0711330:five_prime_UTR 60.0%
CTCTGCGGTGGTTCAAGCAG+TGG + chr5_1:3223291-3223310 Msa0711330:CDS 60.0%
!! GCTGTTGCTAGCTCTGCCTG+TGG - chr5_1:3223979-3223998 None:intergenic 60.0%
!! GTCATTACGGCCACCGGTTC+AGG + chr5_1:3224192-3224211 Msa0711330:CDS 60.0%
!! GCCACCGGTTCAGGACATCA+TGG + chr5_1:3224201-3224220 Msa0711330:CDS 60.0%
CCCATGATGTCCTGAACCGG+TGG - chr5_1:3224205-3224224 None:intergenic 60.0%
TGTTAACCGGCGCCTCTTGG+GGG - chr5_1:3224791-3224810 None:intergenic 60.0%
CCACCGCTGAACCTGACAAG+TGG - chr5_1:3225364-3225383 None:intergenic 60.0%
CCACTTGTCAGGTTCAGCGG+TGG + chr5_1:3225361-3225380 Msa0711330:CDS 60.0%
CCAACTGAGCTACGCTCACG+AGG - chr5_1:3226123-3226142 None:intergenic 60.0%
CCTCGTGAGCGTAGCTCAGT+TGG + chr5_1:3226120-3226139 Msa0711330:intron 60.0%
TATGCCCGGGGTTCAAACCC+CGG + chr5_1:3226167-3226186 Msa0711330:intron 60.0%
GTCCCATTCGTTGCGGAGCC+CGG - chr5_1:3222987-3223006 None:intergenic 65.0%
! GGGGGCTGGGGCACTAGTTA+AGG - chr5_1:3224773-3224792 None:intergenic 65.0%
CGGGTAGCCCTGAGCATGGA+TGG + chr5_1:3224861-3224880 Msa0711330:intron 65.0%
AGTGGCCGGGGTTTGAACCC+CGG - chr5_1:3226175-3226194 None:intergenic 65.0%
CTAGTGCCCCAGCCCCCAAG+AGG + chr5_1:3224776-3224795 Msa0711330:intron 70.0%
GGCACGGGTAGCCCTGAGCA+TGG + chr5_1:3224857-3224876 Msa0711330:intron 70.0%
GTGGCCGGGGTTTGAACCCC+GGG - chr5_1:3226174-3226193 None:intergenic 70.0%
ACCGGCGCCTCTTGGGGGCT+GGG - chr5_1:3224786-3224805 None:intergenic 75.0%
AACCGGCGCCTCTTGGGGGC+TGG - chr5_1:3224787-3224806 None:intergenic 75.0%
! CCGGCGCCTCTTGGGGGCTG+GGG - chr5_1:3224785-3224804 None:intergenic 80.0%
!! CCCCAGCCCCCAAGAGGCGC+CGG + chr5_1:3224782-3224801 Msa0711330:intron 80.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 3222685 3227423 3222685 ID=Msa0711330;Name=Msa0711330
chr5_1 mRNA 3222685 3227423 3222685 ID=Msa0711330-mRNA-1;Parent=Msa0711330;Name=Msa0711330-mRNA-1;_AED=0.01;_eAED=0.01;_QI=403|1|1|1|0.8|0.66|6|420|466
chr5_1 exon 3222685 3222710 3222685 ID=Msa0711330-mRNA-1:exon:1172;Parent=Msa0711330-mRNA-1
chr5_1 exon 3222837 3223549 3222837 ID=Msa0711330-mRNA-1:exon:1173;Parent=Msa0711330-mRNA-1
chr5_1 exon 3223982 3224341 3223982 ID=Msa0711330-mRNA-1:exon:1174;Parent=Msa0711330-mRNA-1
chr5_1 exon 3225281 3225714 3225281 ID=Msa0711330-mRNA-1:exon:1175;Parent=Msa0711330-mRNA-1
chr5_1 exon 3226423 3226517 3226423 ID=Msa0711330-mRNA-1:exon:1176;Parent=Msa0711330-mRNA-1
chr5_1 exon 3226828 3227423 3226828 ID=Msa0711330-mRNA-1:exon:1177;Parent=Msa0711330-mRNA-1
chr5_1 five_prime_UTR 3222685 3222710 3222685 ID=Msa0711330-mRNA-1:five_prime_utr;Parent=Msa0711330-mRNA-1
chr5_1 five_prime_UTR 3222837 3223213 3222837 ID=Msa0711330-mRNA-1:five_prime_utr;Parent=Msa0711330-mRNA-1
chr5_1 CDS 3223214 3223549 3223214 ID=Msa0711330-mRNA-1:cds;Parent=Msa0711330-mRNA-1
chr5_1 CDS 3223982 3224341 3223982 ID=Msa0711330-mRNA-1:cds;Parent=Msa0711330-mRNA-1
chr5_1 CDS 3225281 3225714 3225281 ID=Msa0711330-mRNA-1:cds;Parent=Msa0711330-mRNA-1
chr5_1 CDS 3226423 3226517 3226423 ID=Msa0711330-mRNA-1:cds;Parent=Msa0711330-mRNA-1
chr5_1 CDS 3226828 3227003 3226828 ID=Msa0711330-mRNA-1:cds;Parent=Msa0711330-mRNA-1
chr5_1 three_prime_UTR 3227004 3227423 3227004 ID=Msa0711330-mRNA-1:three_prime_utr;Parent=Msa0711330-mRNA-1
Gene Sequence

>Msa0711330

ATGGCCGCATGTAAATTACAAGGTACAATTGTAAGAAACCAATTCATAGAAAAAAAGGTAGTGCCCAAAGAGCGTAACTCTGCGGTGGTTCAAGCAGTGGTTACTCGTGATAAGTTTAAGGTTAAGATCCCTCAATTAGCCACTACATATACACCCTTGCCTTCCACAATACCCTTGATTGAGAAAGGCACAGCAATTATTGTAGAGACAGAAGATACCACTTCTAATGGAAAATTTGGTAGGTTTGGAGGGAAGTTTGTACCAGAAACACTTGTAATGTGCTTGAACCAGCTTGAAGCTGAGTTTAAAAATGCCCTCCGCGATGATGTTTTTCAGGCAGAGCTAGCAACAGCATTAAGAGACTATATTGGAAGAGAGACACCACTGTATCATGCTCAAAGGTTGTCAGAGCATTACAAAAGCAAGAATGGTGGGAAAGGGCCTGATATATACTTGAAAAGAGAGGATCTAAACCATACTGGCTCTCACAAGATGAACAATGCTCTTGCACAAGCTATGATTGCCAAGCGCATCGGTCGAAAAAGTGTCATTACGGCCACCGGTTCAGGACATCATGGGCTTGCAACAGCTGCTGCATGCGCAAAACTTGCTTTGGAGTGCACGGTCTTTATGGCTGCCAAAGACATGGACAGACAATCATCTAATGTACGGTTGATGAAGCTCTTAGGAGCTAAGGTTGAAGCTGTAAATGGATGTTTCAAAGATGCATCATCAGAGGCTTTTCGCTGTTGGGTTGGAGACTTGGAAAACAGCTACCACTTGTCAGGTTCAGCGGTGGGACCACATCCATGTCCTACCATGGTACGTGAATTTCAGTCGGTGATTGGGAAAGAAACAAGGAAACAAGCATGGAAAAAATGGGGAGGAAAACCAGACATTATTGTTGCAAGTGTTGGAACAGGTTCAAATGCTTTAGGTATATTCCATGAGTTTCTATCAGACACAGATGTGAGATTGATTGGAGTTGAAGCTGCTGGTTTAGGGTTAGATAGTGGAAAACATTCTTCCACTTTGGCCAAAGGAGAAATGGGTGTTTATCATGGTGCTATCTCCTATTTATTGCAAGATGGTGATGGACAAATTATTGAACCTCATTCCATTGCAGCTGGGATGGAGTACCCAGGAGTTGGTCCAGAGTTGAGTTTCCACAAAGAAAGTGGGCGTGCAGAGTTTTGTGTCGCAACCGATGAAGAAGCTCTTGATGCGTACGAGAGATTATGCAAATTGGAGGGTATATTTCCATCTCTAGAGGCAGCACATGCATTGGCTATATTAGATAAGCTGGTTCCTACTTTACCAAACGACAACATTAAGGTTGTTGTAAATTGTAGTGGACGTGGAGACAAAGATGCGGATATAGTCTTCAATTGTAGAAAATGA
Protein sequence

>Msa0711330

MAACKLQGTIVRNQFIEKKVVPKERNSAVVQAVVTRDKFKVKIPQLATTYTPLPSTIPLIEKGTAIIVETEDTTSNGKFGRFGGKFVPETLVMCLNQLEAEFKNALRDDVFQAELATALRDYIGRETPLYHAQRLSEHYKSKNGGKGPDIYLKREDLNHTGSHKMNNALAQAMIAKRIGRKSVITATGSGHHGLATAAACAKLALECTVFMAAKDMDRQSSNVRLMKLLGAKVEAVNGCFKDASSEAFRCWVGDLENSYHLSGSAVGPHPCPTMVREFQSVIGKETRKQAWKKWGGKPDIIVASVGTGSNALGIFHEFLSDTDVRLIGVEAAGLGLDSGKHSSTLAKGEMGVYHGAISYLLQDGDGQIIEPHSIAAGMEYPGVGPELSFHKESGRAEFCVATDEEALDAYERLCKLEGIFPSLEAAHALAILDKLVPTLPNDNIKVVVNCSGRGDKDADIVFNCRK*