Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1378850 | XP_003610663.1 | 95.923 | 466 | 19 | 0 | 1 | 466 | 1 | 466 | 0.0 | 906 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1378850 | sp|O50046|TRPB_CAMAC | 62.500 | 400 | 142 | 4 | 61 | 457 | 62 | 456 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1378850 | G7K113 | 95.923 | 466 | 19 | 0 | 1 | 466 | 1 | 466 | 0.0 | 906 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0711330 | Msa1378850 | 0.969931 | 7.465528e-131 | -8.615850e-47 |
| Msa0751780 | Msa1378850 | 0.951001 | 5.108852e-109 | -8.615850e-47 |
| Msa0831960 | Msa1378850 | 0.984735 | 1.973550e-161 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1378850 | MtrunA17_Chr5g0394121 | 95.923 | 466 | 19 | 0 | 1 | 466 | 1 | 466 | 0.0 | 906 |
| Msa1378850 | MtrunA17_Chr3g0098621 | 64.631 | 393 | 134 | 3 | 68 | 457 | 12 | 402 | 0.0 | 534 |
| Msa1378850 | MtrunA17_Chr3g0097941 | 61.220 | 410 | 152 | 4 | 55 | 461 | 55 | 460 | 0.0 | 529 |
| Msa1378850 | MtrunA17_Chr6g0456431 | 27.679 | 336 | 194 | 9 | 123 | 430 | 124 | 438 | 2.47e-19 | 90.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1378850 | AT5G28237.1 | 60.860 | 465 | 172 | 4 | 1 | 463 | 1 | 457 | 0.0 | 560 |
| Msa1378850 | AT5G54810.1 | 58.409 | 440 | 162 | 5 | 41 | 461 | 27 | 464 | 0.0 | 523 |
| Msa1378850 | AT4G27070.1 | 62.694 | 386 | 139 | 3 | 75 | 457 | 82 | 465 | 0.0 | 519 |
| Msa1378850 | AT5G28237.2 | 58.711 | 419 | 164 | 3 | 1 | 417 | 1 | 412 | 7.94e-172 | 490 |
| Msa1378850 | AT5G38530.1 | 27.492 | 331 | 201 | 8 | 123 | 430 | 130 | 444 | 4.85e-19 | 90.1 |
Find 119 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGAGTGCACGGTCTTTA+TGG | 0.214615 | tig0020227:-2947 | Msa1378850:CDS |
| GGTTACTCGTGATAAGTTTA+AGG | 0.215974 | tig0020227:-3876 | Msa1378850:CDS |
| CACCGCAGAGTTTCGCTCTT+TGG | 0.229380 | tig0020227:+3910 | Msa1378850:intergenic |
| ACCACTTCTACTGGAAAATT+TGG | 0.233335 | tig0020227:-3758 | Msa1378850:CDS |
| GGAGTTGAAGCTGCTGGTTT+AGG | 0.247180 | tig0020227:-1462 | Msa1378850:CDS |
| AAGCACATTACAAGTGTTTC+TGG | 0.272299 | tig0020227:+3713 | Msa1378850:intergenic |
| GGAACAGGTTCAAATGCTTT+AGG | 0.299421 | tig0020227:-1528 | Msa1378850:CDS |
| GAGTTGAAGCTGCTGGTTTA+GGG | 0.305218 | tig0020227:-1461 | Msa1378850:CDS |
| ACTGGAAAATTTGGTAGGTT+TGG | 0.314647 | tig0020227:-3749 | Msa1378850:CDS |
| CTGCACGCCCACTTTCTTTG+TGG | 0.315424 | tig0020227:+558 | Msa1378850:intergenic |
| CTTACAACCACTTCTACAAT+AGG | 0.315989 | tig0020227:-4299 | Msa1378850:five_prime_UTR |
| CCAGTAGAAGTGGTATCTTC+TGG | 0.317907 | tig0020227:+3767 | Msa1378850:intergenic |
| CACTTTGGCCAAAGGAGAAA+TGG | 0.320799 | tig0020227:-1415 | Msa1378850:CDS |
| GTCATTACGGCCACCGGTTC+AGG | 0.323596 | tig0020227:-3012 | Msa1378850:CDS |
| GACCACCAAGTATAAATAAA+AGG | 0.327114 | tig0020227:-4107 | Msa1378850:five_prime_UTR |
| ACCGCAGAGTTTCGCTCTTT+GGG | 0.331615 | tig0020227:+3911 | Msa1378850:intergenic |
| TGGTATAATAGTTCATAGTT+AGG | 0.352582 | tig0020227:+4366 | Msa1378850:intergenic |
| ATGTAGGTTGAAGCTGTAAA+TGG | 0.356386 | tig0020227:-1753 | Msa1378850:intron |
| CGTGAATTTCAGTCGGTGAT+TGG | 0.356593 | tig0020227:-1618 | Msa1378850:CDS |
| TTCTGTGGCTTTCTCAATCA+AGG | 0.358837 | tig0020227:+3802 | Msa1378850:intergenic |
| TGATTGTCTGTCCATGTCTT+TGG | 0.364123 | tig0020227:+2921 | Msa1378850:intergenic |
| ATAAACACCCATTTCTCCTT+TGG | 0.365617 | tig0020227:+1407 | Msa1378850:intergenic |
| TCATCTTGTGAGAGCCAGTA+TGG | 0.367051 | tig0020227:+3085 | Msa1378850:intergenic |
| GTACGGTTGATGAAGCTCTT+AGG | 0.375053 | tig0020227:-2892 | Msa1378850:CDS |
| GACACAGATGTGAGATTGAT+TGG | 0.387117 | tig0020227:-1483 | Msa1378850:CDS |
| TACTTGGTGGTCGACGCAAC+TGG | 0.389594 | tig0020227:+4118 | Msa1378850:intergenic |
| TCGCTGTTGGGTTGGAGACT+TGG | 0.396871 | tig0020227:-1700 | Msa1378850:CDS |
| ACAGCATTAAGAGACTATAT+TGG | 0.410677 | tig0020227:-3210 | Msa1378850:CDS |
| GACATTATTGTTGCAAGTGT+TGG | 0.413780 | tig0020227:-1549 | Msa1378850:CDS |
| TGCATGCGCAAAACTTGCTT+TGG | 0.418487 | tig0020227:-2965 | Msa1378850:CDS |
| ATCACCATCTTGCAATAAAT+AGG | 0.421091 | tig0020227:+1371 | Msa1378850:intergenic |
| GTGAATTTCAGTCGGTGATT+GGG | 0.424558 | tig0020227:-1617 | Msa1378850:CDS |
| GGTATAATAGTTCATAGTTA+GGG | 0.426437 | tig0020227:+4367 | Msa1378850:intergenic |
| ACCGATGAAGAAGCTCTTGA+TGG | 0.431720 | tig0020227:-521 | Msa1378850:intron |
| CTCAACTCTGGACCAACTCC+TGG | 0.438434 | tig0020227:+584 | Msa1378850:intergenic |
| ATTGTTGCAAGTGTTGGAAC+AGG | 0.446515 | tig0020227:-1543 | Msa1378850:CDS |
| ACAACATAACATAAGATAAG+AGG | 0.448211 | tig0020227:-4057 | Msa1378850:five_prime_UTR |
| GAAAACAGCTACCACTTGTC+AGG | 0.455616 | tig0020227:-1678 | Msa1378850:CDS |
| GGAAAATTTGGTAGGTTTGG+AGG | 0.456684 | tig0020227:-3746 | Msa1378850:CDS |
| AGAGAGGATCTAAACCATAC+TGG | 0.468188 | tig0020227:-3099 | Msa1378850:CDS |
| GAACCTCACTCCATTGCAGC+TGG | 0.468797 | tig0020227:-1336 | Msa1378850:CDS |
| CCAGAAGATACCACTTCTAC+TGG | 0.470024 | tig0020227:-3767 | Msa1378850:CDS |
| TGGAAAACATTCTTCCACTT+TGG | 0.473305 | tig0020227:-1430 | Msa1378850:CDS |
| TTATGTCACGTGTAAATTTG+CGG | 0.473605 | tig0020227:-4243 | Msa1378850:five_prime_UTR |
| CTAATTTACATGGCGGAGCT+AGG | 0.473645 | tig0020227:+4191 | Msa1378850:intergenic |
| GTATATGTAGTGGCTAATTG+AGG | 0.478553 | tig0020227:+3845 | Msa1378850:intergenic |
| ATCTCCTATTTATTGCAAGA+TGG | 0.482125 | tig0020227:-1375 | Msa1378850:CDS |
| TATTTATTGCAAGATGGTGA+TGG | 0.487590 | tig0020227:-1369 | Msa1378850:CDS |
| ACTTTGGCCAAAGGAGAAAT+GGG | 0.488098 | tig0020227:-1414 | Msa1378850:CDS |
| CTTCTACTGGAAAATTTGGT+AGG | 0.489001 | tig0020227:-3754 | Msa1378850:CDS |
| GCTGGTTTAGGGTTAGATAG+TGG | 0.489960 | tig0020227:-1450 | Msa1378850:CDS |
| GAGCATTACAAAAGCAAGAA+TGG | 0.491569 | tig0020227:-3150 | Msa1378850:CDS |
| CATTTCTCCTTTGGCCAAAG+TGG | 0.494631 | tig0020227:+1416 | Msa1378850:intergenic |
| TTACAACCACTTCTACAATA+GGG | 0.494819 | tig0020227:-4298 | Msa1378850:five_prime_UTR |
| CATTCTTCCACTTTGGCCAA+AGG | 0.495954 | tig0020227:-1423 | Msa1378850:CDS |
| ACACTTGCAACAATAATGTC+TGG | 0.497623 | tig0020227:+1552 | Msa1378850:intergenic |
| ATTATGCCCTATTGTAGAAG+TGG | 0.508895 | tig0020227:+4292 | Msa1378850:intergenic |
| TTGAGTTTCCACAAAGAAAG+TGG | 0.510284 | tig0020227:-566 | Msa1378850:CDS |
| GCCACCGGTTCAGGACATCA+TGG | 0.514927 | tig0020227:-3003 | Msa1378850:CDS |
| TGGCTCTACAATAATTTCTG+TGG | 0.515208 | tig0020227:+3787 | Msa1378850:intergenic |
| TTGATTGGAGTTGAAGCTGC+TGG | 0.521751 | tig0020227:-1468 | Msa1378850:CDS |
| GAAAATTTGGTAGGTTTGGA+GGG | 0.522358 | tig0020227:-3745 | Msa1378850:CDS |
| TCTTTGTGGAAACTCAACTC+TGG | 0.527612 | tig0020227:+572 | Msa1378850:intergenic |
| AAAAGCAAGAATGGTGGGAA+AGG | 0.530194 | tig0020227:-3141 | Msa1378850:CDS |
| AAAGCAAGAATGGTGGGAAA+GGG | 0.533130 | tig0020227:-3140 | Msa1378850:CDS |
| CAAGGGTATTGTGGAAGGCA+AGG | 0.533424 | tig0020227:+3820 | Msa1378850:intergenic |
| GGAGAAATGGGTGTTTATCA+TGG | 0.535396 | tig0020227:-1402 | Msa1378850:CDS |
| ACAAGTGATTGTAACTTGAA+TGG | 0.535469 | tig0020227:+4346 | Msa1378850:intergenic |
| GGGTTAAGCACTAATTTACA+TGG | 0.548029 | tig0020227:+4181 | Msa1378850:intergenic |
| CACTTGTCAGGTTCAGCGGT+GGG | 0.551258 | tig0020227:-1666 | Msa1378850:CDS |
| CTTTATGGCTGCCAAAGACA+TGG | 0.556703 | tig0020227:-2932 | Msa1378850:CDS |
| AAAAGTGTCATTACGGCCAC+CGG | 0.557084 | tig0020227:-3018 | Msa1378850:CDS |
| AAGCCCATGATGTCCTGAAC+CGG | 0.557178 | tig0020227:+2999 | Msa1378850:intergenic |
| CTGTGTCTGATAGAAACTCA+TGG | 0.558634 | tig0020227:+1499 | Msa1378850:intergenic |
| TCTGTGGCTTTCTCAATCAA+GGG | 0.563729 | tig0020227:+3803 | Msa1378850:intergenic |
| TTTCTCAATCAAGGGTATTG+TGG | 0.563983 | tig0020227:+3811 | Msa1378850:intergenic |
| TATATGTAGTGGCTAATTGA+GGG | 0.565294 | tig0020227:+3846 | Msa1378850:intergenic |
| CCACCGGTTCAGGACATCAT+GGG | 0.569455 | tig0020227:-3002 | Msa1378850:CDS |
| TCAATCAAGGGTATTGTGGA+AGG | 0.569510 | tig0020227:+3815 | Msa1378850:intergenic |
| GATGAAGCTCTTAGGAGCTA+AGG | 0.571020 | tig0020227:-2884 | Msa1378850:intron |
| AAAACTTGCTTTGGAGTGCA+CGG | 0.574611 | tig0020227:-2956 | Msa1378850:CDS |
| AACCTCACTCCATTGCAGCT+GGG | 0.576151 | tig0020227:-1335 | Msa1378850:intron |
| CTCTGCGGTGGTTCAAGCAG+TGG | 0.576203 | tig0020227:-3897 | Msa1378850:CDS |
| CGGTGATTGGGAAAGAAACA+AGG | 0.584635 | tig0020227:-1605 | Msa1378850:CDS |
| AGGATGGAGTACCCAGGAGT+TGG | 0.585909 | tig0020227:-596 | Msa1378850:CDS |
| ACCATCAAGAGCTTCTTCAT+CGG | 0.586467 | tig0020227:+520 | Msa1378850:intergenic |
| AAGAAACAAGGAAACAAGCA+TGG | 0.587611 | tig0020227:-1593 | Msa1378850:CDS |
| AAGGGTATTGTGGAAGGCAA+GGG | 0.587691 | tig0020227:+3821 | Msa1378850:intergenic |
| TGAAATTCACGTACCATGGT+AGG | 0.591953 | tig0020227:+1630 | Msa1378850:intergenic |
| CCACTTGTCAGGTTCAGCGG+TGG | 0.592505 | tig0020227:-1667 | Msa1378850:CDS |
| GCTATGATTGCCAAGCGCAT+CGG | 0.597909 | tig0020227:-3045 | Msa1378850:CDS |
| ATTACAAAAGCAAGAATGGT+GGG | 0.599564 | tig0020227:-3146 | Msa1378850:CDS |
| TGTGACTTACCCAGCTGCAA+TGG | 0.601635 | tig0020227:+1326 | Msa1378850:intergenic |
| CTACCACTTGTCAGGTTCAG+CGG | 0.602899 | tig0020227:-1670 | Msa1378850:CDS |
| TCAACTCTGGACCAACTCCT+GGG | 0.607704 | tig0020227:+585 | Msa1378850:intergenic |
| CACCACTGTATCATGCTCAA+AGG | 0.607867 | tig0020227:-3179 | Msa1378850:CDS |
| TGAGTTTCCACAAAGAAAGT+GGG | 0.608742 | tig0020227:-565 | Msa1378850:CDS |
| CCCATGATGTCCTGAACCGG+TGG | 0.609306 | tig0020227:+3002 | Msa1378850:intergenic |
| TTTCAAAGATGCATCATCAG+AGG | 0.611931 | tig0020227:-1727 | Msa1378850:CDS |
| ACAGACAATCATCTAATGTA+CGG | 0.615143 | tig0020227:-2909 | Msa1378850:CDS |
| CGACTGAAATTCACGTACCA+TGG | 0.615376 | tig0020227:+1626 | Msa1378850:intergenic |
| TGTACCTTGCAATTTACATG+CGG | 0.630336 | tig0020227:+3970 | Msa1378850:intergenic |
| TACCCAGCTGCAATGGAGTG+AGG | 0.630521 | tig0020227:+1333 | Msa1378850:intergenic |
| AGGCAAGGGTGTATATGTAG+TGG | 0.631568 | tig0020227:+3835 | Msa1378850:intergenic |
| TGATATATACTTGAAAAGAG+AGG | 0.635009 | tig0020227:-3115 | Msa1378850:CDS |
| TCACGTACCATGGTAGGACA+TGG | 0.639647 | tig0020227:+1636 | Msa1378850:intergenic |
| GTATAATAGTTCATAGTTAG+GGG | 0.642332 | tig0020227:+4368 | Msa1378850:intergenic |
| ACCACATCCATGTCCTACCA+TGG | 0.651627 | tig0020227:-1643 | Msa1378850:CDS |
| ACCATGGTAGGACATGGATG+TGG | 0.654355 | tig0020227:+1642 | Msa1378850:intergenic |
| CATTACAAAAGCAAGAATGG+TGG | 0.664051 | tig0020227:-3147 | Msa1378850:CDS |
| ATGGCCGCATGTAAATTGCA+AGG | 0.666722 | tig0020227:-3974 | Msa1378850:CDS |
| CAAAGAGCGAAACTCTGCGG+TGG | 0.667011 | tig0020227:-3909 | Msa1378850:CDS |
| CATGGTACGTGAATTTCAGT+CGG | 0.668535 | tig0020227:-1625 | Msa1378850:CDS |
| CCACCGCTGAACCTGACAAG+TGG | 0.669141 | tig0020227:+1667 | Msa1378850:intergenic |
| TTGGTGGTCGACGCAACTGG+AGG | 0.671260 | tig0020227:+4121 | Msa1378850:intergenic |
| ATTTACAGGATGGAGTACCC+AGG | 0.682078 | tig0020227:-602 | Msa1378850:intron |
| GCCCAAAGAGCGAAACTCTG+CGG | 0.693803 | tig0020227:-3912 | Msa1378850:CDS |
| AACCTTTGAGCATGATACAG+TGG | 0.716295 | tig0020227:+3177 | Msa1378840:intergenic |
| TTAAGCACTAATTTACATGG+CGG | 0.742022 | tig0020227:+4184 | Msa1378840:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATCAGTATATAATT+TGG | - | tig0020227:846-865 | Msa1378850:intron | 10.0% |
| !!! | TTGAAAAGAATTTTTTTTAA+GGG | + | tig0020227:977-996 | Msa1378850:intergenic | 10.0% |
| !!! | TTTGAAAAGAATTTTTTTTA+AGG | + | tig0020227:978-997 | Msa1378850:intergenic | 10.0% |
| !! | TGTTCAATAATTAAAATTAA+AGG | + | tig0020227:1525-1544 | Msa1378850:intergenic | 10.0% |
| !! | ATTAAACTTATTGTAAAAAA+TGG | + | tig0020227:1623-1642 | Msa1378850:intergenic | 10.0% |
| !!! | ATAAAATTGATAACAATTAT+TGG | + | tig0020227:3066-3085 | Msa1378850:intergenic | 10.0% |
| !!! | TATTAAATAGTTTAATTTAG+AGG | - | tig0020227:3400-3419 | Msa1378850:intron | 10.0% |
| !!! | ATTAAATAGTTTAATTTAGA+GGG | - | tig0020227:3401-3420 | Msa1378850:intron | 10.0% |
| !!! | TATATACACAAATTTTTATT+TGG | + | tig0020227:3643-3662 | Msa1378850:intergenic | 10.0% |
| !! | TTAAATTAATTTCAAGATAC+TGG | + | tig0020227:822-841 | Msa1378850:intergenic | 15.0% |
| !!! | AAAATTTATTGGATTCTTTT+AGG | + | tig0020227:1562-1581 | Msa1378850:intergenic | 15.0% |
| !! | TTTAACATTCTCATTTAATT+TGG | + | tig0020227:1973-1992 | Msa1378850:intergenic | 15.0% |
| !! | AATTAAATGAGAATGTTAAA+CGG | - | tig0020227:1973-1992 | Msa1378850:intron | 15.0% |
| !! | AATTACTTGATCAAAAATAA+CGG | - | tig0020227:2058-2077 | Msa1378850:intron | 15.0% |
| !! | TAATTAAATTGAAATAGGAT+AGG | + | tig0020227:3199-3218 | Msa1378850:intergenic | 15.0% |
| !! | ATCACTAATTAAATTGAAAT+AGG | + | tig0020227:3204-3223 | Msa1378850:intergenic | 15.0% |
| !!! | TATATGCACAAATTTTTATT+TGG | + | tig0020227:3572-3591 | Msa1378850:intergenic | 15.0% |
| !!! | AATTTTTATTTGGAAAAAGT+TGG | + | tig0020227:3633-3652 | Msa1378850:intergenic | 15.0% |
| !! | AATGATTTAATAAACAATCA+TGG | - | tig0020227:3703-3722 | Msa1378850:CDS | 15.0% |
| !!! | TTTTTTAATTATTTACAGGA+TGG | - | tig0020227:3754-3773 | Msa1378850:CDS | 15.0% |
| !!! | TTAATGTCTATGTTTTAATT+AGG | + | tig0020227:3886-3905 | Msa1378850:intergenic | 15.0% |
| !!! | TTCAGGTAATTTTGTTAATT+AGG | - | tig0020227:723-742 | Msa1378850:intron | 20.0% |
| !!! | AATTTTGTTAATTAGGATGA+AGG | - | tig0020227:730-749 | Msa1378850:intron | 20.0% |
| !!! | TTATGTTATTTGATAGTTTG+AGG | + | tig0020227:1106-1125 | Msa1378850:intergenic | 20.0% |
| !! | ATAGCCATTCAAAATTTATT+TGG | - | tig0020227:1728-1747 | Msa1378850:CDS | 20.0% |
| !! | AATGTCTTTATCTTTATGTT+TGG | + | tig0020227:2516-2535 | Msa1378850:intergenic | 20.0% |
| !! | AATAATGTATGTAAACATGT+AGG | - | tig0020227:2597-2616 | Msa1378850:intron | 20.0% |
| !!! | AAATTTTTATTTGGAAGGAA+TGG | + | tig0020227:3563-3582 | Msa1378850:intergenic | 20.0% |
| !!! | AAGTGGTTGTAAGTTTTTTT+AGG | + | tig0020227:60-79 | Msa1271170:intergenic | 25.0% |
| ! | ACAACATAACATAAGATAAG+AGG | - | tig0020227:309-328 | Msa1378850:intron | 25.0% |
| ! | AAAAAACACAAACACAAACA+TGG | - | tig0020227:373-392 | Msa1378850:intron | 25.0% |
| ! | AAGCCAATTCATAGAAAAAA+AGG | - | tig0020227:427-446 | Msa1378850:intron | 25.0% |
| !!! | CTACCTTTTTTTCTATGAAT+TGG | + | tig0020227:433-452 | Msa1378850:intergenic | 25.0% |
| ! | AACAAGTGATTAAACTCTAT+TGG | + | tig0020227:896-915 | Msa1378850:intergenic | 25.0% |
| ! | ATAAAAATAATTGTTCCCAC+AGG | - | tig0020227:1122-1141 | Msa1378850:intron | 25.0% |
| !!! | TCTCTTTTCAAGTATATATC+AGG | + | tig0020227:1252-1271 | Msa1378850:intergenic | 25.0% |
| ! | TGATATATACTTGAAAAGAG+AGG | - | tig0020227:1251-1270 | Msa1378850:intron | 25.0% |
| !!! | TTTATTGGATTCTTTTAGGT+AGG | + | tig0020227:1558-1577 | Msa1378850:intergenic | 25.0% |
| ! | AAAATGGAGAAGACAATTAT+TGG | + | tig0020227:1607-1626 | Msa1378850:intergenic | 25.0% |
| ! | TGAAAAAATCGTGTAAAATG+AGG | + | tig0020227:1654-1673 | Msa1378850:intergenic | 25.0% |
| !!! | TCCTCAATCATTGTTTTATT+TGG | - | tig0020227:1675-1694 | Msa1378850:CDS | 25.0% |
| ! | TTTATTTGGCAAAATTTACG+TGG | - | tig0020227:1689-1708 | Msa1378850:CDS | 25.0% |
| ! | TTGAATGGCTATCTATAAAA+TGG | + | tig0020227:1720-1739 | Msa1378850:intergenic | 25.0% |
| !! | AGTGCCAAATAAATTTTGAA+TGG | + | tig0020227:1735-1754 | Msa1378850:intergenic | 25.0% |
| ! | TCAAAATTTATTTGGCACTT+TGG | - | tig0020227:1736-1755 | Msa1378850:CDS | 25.0% |
| !!! | AATTTTCATGCCTCTAAAAA+TGG | + | tig0020227:2254-2273 | Msa1378850:intergenic | 25.0% |
| !!! | ACCATTTTATTGATTCATCT+AGG | - | tig0020227:2432-2451 | Msa1378850:intron | 25.0% |
| !!! | CCATTTTATTGATTCATCTA+GGG | - | tig0020227:2433-2452 | Msa1378850:intron | 25.0% |
| ! | TCTTTATCTTTATGTTTGGA+AGG | + | tig0020227:2512-2531 | Msa1378850:intergenic | 25.0% |
| !! | GAAAGTGATTTTGTGTTTTA+TGG | - | tig0020227:3346-3365 | Msa1378850:intron | 25.0% |
| !!! | GGAAAAAGTTGATCTTTTTT+TGG | + | tig0020227:3538-3557 | Msa1378850:intergenic | 25.0% |
| !!! | TGCACAAATTTTTATTTGGA+AGG | + | tig0020227:3568-3587 | Msa1378850:intergenic | 25.0% |
| ! | ATCAAATGATGGTCTAATTT+GGG | + | tig0020227:3673-3692 | Msa1378850:intergenic | 25.0% |
| ! | AATCAAATGATGGTCTAATT+TGG | + | tig0020227:3674-3693 | Msa1378850:intergenic | 25.0% |
| ! | ACCATCATTTGATTATTGTA+GGG | - | tig0020227:3680-3699 | Msa1378850:CDS | 25.0% |
| ! | AAACAATGGAGAGAAAAAAA+AGG | + | tig0020227:4030-4049 | Msa1378850:intergenic | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | + | tig0020227:4044-4063 | Msa1378850:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | + | tig0020227:4057-4076 | Msa1378850:intergenic | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | - | tig0020227:4056-4075 | Msa1378850:five_prime_UTR | 25.0% |
| ! | ACTGTTTAAATATTTGTGCA+TGG | + | tig0020227:4137-4156 | Msa1378850:intergenic | 25.0% |
| ACAAGTGATTGTAACTTGAA+TGG | + | tig0020227:23-42 | Msa1271170:intergenic | 30.0% | |
| TTACAACCACTTCTACAATA+GGG | - | tig0020227:68-87 | Msa1378850:CDS | 30.0% | |
| TTATGTCACGTGTAAATTTG+CGG | - | tig0020227:123-142 | Msa1378850:CDS | 30.0% | |
| ! | CTAGGAATTTTGTAGAATCT+GGG | + | tig0020227:160-179 | Msa1378850:intergenic | 30.0% |
| TTAAGCACTAATTTACATGG+CGG | + | tig0020227:185-204 | Msa1378850:intergenic | 30.0% | |
| GACCACCAAGTATAAATAAA+AGG | - | tig0020227:259-278 | Msa1378850:intron | 30.0% | |
| !! | CACCTTTTATTTATACTTGG+TGG | + | tig0020227:264-283 | Msa1378850:intergenic | 30.0% |
| !! | CAGCACCTTTTATTTATACT+TGG | + | tig0020227:267-286 | Msa1378850:intergenic | 30.0% |
| !!! | TGTGTTTGTGTTTTTTGTGT+TGG | + | tig0020227:369-388 | Msa1378850:intergenic | 30.0% |
| TATATGTAGTGGCTAATTGA+GGG | + | tig0020227:523-542 | Msa1378850:intergenic | 30.0% | |
| AAAATCTTCAATTCCTACCT+TGG | + | tig0020227:768-787 | Msa1378850:intergenic | 30.0% | |
| ! | AGGTAGGAATTGAAGATTTT+TGG | - | tig0020227:768-787 | Msa1378850:intron | 30.0% |
| !!! | GAATTTTTTTTAAGGGTGCA+TGG | + | tig0020227:970-989 | Msa1378850:intergenic | 30.0% |
| GAATTCACAAACATAAGAGT+AGG | + | tig0020227:1084-1103 | Msa1378850:intergenic | 30.0% | |
| ACAGCATTAAGAGACTATAT+TGG | - | tig0020227:1156-1175 | Msa1378850:intron | 30.0% | |
| ATTACAAAAGCAAGAATGGT+GGG | - | tig0020227:1220-1239 | Msa1378850:intron | 30.0% | |
| ACAGACAATCATCTAATGTA+CGG | - | tig0020227:1457-1476 | Msa1378850:CDS | 30.0% | |
| GCCAAATAAAACAATGATTG+AGG | + | tig0020227:1679-1698 | Msa1378850:intergenic | 30.0% | |
| ATGGCTATCTATAAAATGGT+AGG | + | tig0020227:1716-1735 | Msa1378850:intergenic | 30.0% | |
| ATAACTATGGGGTAATACTT+TGG | + | tig0020227:1911-1930 | Msa1378850:intergenic | 30.0% | |
| ! | ATTTGGTTGATTAGTTAAGC+AGG | + | tig0020227:1956-1975 | Msa1378850:intergenic | 30.0% |
| !! | ATGCTTTGAGAATATCTTAG+TGG | - | tig0020227:2183-2202 | Msa1378850:intron | 30.0% |
| !! | ACTCGCTTTAATTGATTTTG+TGG | - | tig0020227:2320-2339 | Msa1378850:intron | 30.0% |
| CCCTAGATGAATCAATAAAA+TGG | + | tig0020227:2436-2455 | Msa1378850:intergenic | 30.0% | |
| GAAACAAGCATGGAAAAAAT+GGG | - | tig0020227:2783-2802 | Msa1378850:intron | 30.0% | |
| AAACAAGCATGGAAAAAATG+GGG | - | tig0020227:2784-2803 | Msa1378850:intron | 30.0% | |
| ATCTCCTATTTATTGCAAGA+TGG | - | tig0020227:2991-3010 | Msa1378850:CDS | 30.0% | |
| ATCACCATCTTGCAATAAAT+AGG | + | tig0020227:2998-3017 | Msa1378850:intergenic | 30.0% | |
| TATTTATTGCAAGATGGTGA+TGG | - | tig0020227:2997-3016 | Msa1378850:CDS | 30.0% | |
| CCACAAAACAATAATACTAC+TGG | + | tig0020227:3150-3169 | Msa1378850:intergenic | 30.0% | |
| !! | CCAGTAGTATTATTGTTTTG+TGG | - | tig0020227:3147-3166 | Msa1378850:CDS | 30.0% |
| GCATAAACATAAAATATGCC+CGG | - | tig0020227:3492-3511 | Msa1378850:intron | 30.0% | |
| CATAAACATAAAATATGCCC+GGG | - | tig0020227:3493-3512 | Msa1378850:intron | 30.0% | |
| ATAAACATAAAATATGCCCG+GGG | - | tig0020227:3494-3513 | Msa1378850:intron | 30.0% | |
| !!! | AGTTGATCTTTTTTTGGTAG+TGG | + | tig0020227:3532-3551 | Msa1378850:intergenic | 30.0% |
| !! | TTTTATTTGGAAGGAATGGA+AGG | + | tig0020227:3559-3578 | Msa1378850:intergenic | 30.0% |
| !!! | GGAAAAAGTTGGTCTTTTTT+TGG | + | tig0020227:3622-3641 | Msa1378850:intergenic | 30.0% |
| GACCATCATTTGATTATTGT+AGG | - | tig0020227:3679-3698 | Msa1378850:CDS | 30.0% | |
| TCCCTACAATAATCAAATGA+TGG | + | tig0020227:3684-3703 | Msa1378850:intergenic | 30.0% | |
| GTCTAAAAGTTGTCAAAAAG+TGG | + | tig0020227:3963-3982 | Msa1378850:intergenic | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | - | tig0020227:4082-4101 | Msa1378850:five_prime_UTR | 30.0% | |
| ATTGGCTATATTAGATAAGC+TGG | - | tig0020227:4236-4255 | Msa1378850:five_prime_UTR | 30.0% | |
| TTTACCAAACGACAACATTA+AGG | - | tig0020227:4266-4285 | Msa1378850:five_prime_UTR | 30.0% | |
| AAGGTTGTTGTAAATTGTAG+TGG | - | tig0020227:4285-4304 | Msa1378850:five_prime_UTR | 30.0% | |
| CTTACAACCACTTCTACAAT+AGG | - | tig0020227:67-86 | Msa1378850:CDS | 35.0% | |
| ATTATGCCCTATTGTAGAAG+TGG | + | tig0020227:77-96 | Msa1378850:intergenic | 35.0% | |
| ! | GCTAGGAATTTTGTAGAATC+TGG | + | tig0020227:161-180 | Msa1378850:intergenic | 35.0% |
| GGGTTAAGCACTAATTTACA+TGG | + | tig0020227:188-207 | Msa1378850:intergenic | 35.0% | |
| TGTACCTTGCAATTTACATG+CGG | + | tig0020227:399-418 | Msa1378850:intergenic | 35.0% | |
| GGTTACTCGTGATAAGTTTA+AGG | - | tig0020227:490-509 | Msa1378850:intron | 35.0% | |
| GTATATGTAGTGGCTAATTG+AGG | + | tig0020227:524-543 | Msa1378850:intergenic | 35.0% | |
| !! | TTTCTCAATCAAGGGTATTG+TGG | + | tig0020227:558-577 | Msa1378850:intergenic | 35.0% |
| ! | TGGCTCTACAATAATTTCTG+TGG | + | tig0020227:582-601 | Msa1378850:intergenic | 35.0% |
| ACCACTTCTACTGGAAAATT+TGG | - | tig0020227:608-627 | Msa1378850:intron | 35.0% | |
| ! | ACCAAATTTTCCAGTAGAAG+TGG | + | tig0020227:612-631 | Msa1378850:intergenic | 35.0% |
| CTTCTACTGGAAAATTTGGT+AGG | - | tig0020227:612-631 | Msa1378850:intron | 35.0% | |
| ACTGGAAAATTTGGTAGGTT+TGG | - | tig0020227:617-636 | Msa1378850:intron | 35.0% | |
| GAAAATTTGGTAGGTTTGGA+GGG | - | tig0020227:621-640 | Msa1378850:intron | 35.0% | |
| AAGCACATTACAAGTGTTTC+TGG | + | tig0020227:656-675 | Msa1378850:intergenic | 35.0% | |
| ! | TTTTAAACTCAGCTTCAAGC+TGG | + | tig0020227:682-701 | Msa1378850:intergenic | 35.0% |
| TTACCTGAAAAACATCATCG+TGG | + | tig0020227:712-731 | Msa1378850:intergenic | 35.0% | |
| GAGCATTACAAAAGCAAGAA+TGG | - | tig0020227:1216-1235 | Msa1378850:intron | 35.0% | |
| CATTACAAAAGCAAGAATGG+TGG | - | tig0020227:1219-1238 | Msa1378850:intron | 35.0% | |
| GTATGGGTGACATTAAATCT+GGG | + | tig0020227:1819-1838 | Msa1378850:intergenic | 35.0% | |
| TGTATGGGTGACATTAAATC+TGG | + | tig0020227:1820-1839 | Msa1378850:intergenic | 35.0% | |
| TTACGAGGATCATAACTATG+GGG | + | tig0020227:1922-1941 | Msa1378850:intergenic | 35.0% | |
| GTTACGAGGATCATAACTAT+GGG | + | tig0020227:1923-1942 | Msa1378850:intergenic | 35.0% | |
| TTGAGAATATCTTAGTGGCA+CGG | - | tig0020227:2188-2207 | Msa1378850:intron | 35.0% | |
| ATATGATCGATCATGCTTTG+TGG | - | tig0020227:2467-2486 | Msa1378850:intron | 35.0% | |
| ! | ATGTAGGTTGAAGCTGTAAA+TGG | - | tig0020227:2613-2632 | Msa1378850:intron | 35.0% |
| TTTCAAAGATGCATCATCAG+AGG | - | tig0020227:2639-2658 | Msa1378850:intron | 35.0% | |
| AAGAAACAAGGAAACAAGCA+TGG | - | tig0020227:2773-2792 | Msa1378850:intron | 35.0% | |
| GGAAACAAGCATGGAAAAAA+TGG | - | tig0020227:2782-2801 | Msa1378850:intron | 35.0% | |
| ACACTTGCAACAATAATGTC+TGG | + | tig0020227:2817-2836 | Msa1378850:intergenic | 35.0% | |
| GACATTATTGTTGCAAGTGT+TGG | - | tig0020227:2817-2836 | Msa1378850:intron | 35.0% | |
| TGGAAAACATTCTTCCACTT+TGG | - | tig0020227:2936-2955 | Msa1378850:CDS | 35.0% | |
| ATAAACACCCATTTCTCCTT+TGG | + | tig0020227:2962-2981 | Msa1378850:intergenic | 35.0% | |
| !!! | AGTTGGTCTTTTTTTGGTAG+TGG | + | tig0020227:3616-3635 | Msa1378850:intergenic | 35.0% |
| TTGAGTTTCCACAAAGAAAG+TGG | - | tig0020227:3800-3819 | Msa1378850:CDS | 35.0% | |
| TGAGTTTCCACAAAGAAAGT+GGG | - | tig0020227:3801-3820 | Msa1378850:CDS | 35.0% | |
| GAGAAAAAAAAGGAAGAGAG+AGG | + | tig0020227:4020-4039 | Msa1378850:intergenic | 35.0% | |
| GTACGAGAGATTATGCAAAT+TGG | - | tig0020227:4179-4198 | Msa1378850:five_prime_UTR | 35.0% | |
| GAGAGATTATGCAAATTGGA+GGG | - | tig0020227:4183-4202 | Msa1378850:five_prime_UTR | 35.0% | |
| ! | ATGTTGTCGTTTGGTAAAGT+AGG | + | tig0020227:4264-4283 | Msa1378850:intergenic | 35.0% |
| ACAACCTTAATGTTGTCGTT+TGG | + | tig0020227:4273-4292 | Msa1378850:intergenic | 35.0% | |
| !! | TCAATCAAGGGTATTGTGGA+AGG | + | tig0020227:554-573 | Msa1378850:intergenic | 40.0% |
| TCTGTGGCTTTCTCAATCAA+GGG | + | tig0020227:566-585 | Msa1378850:intergenic | 40.0% | |
| TTCTGTGGCTTTCTCAATCA+AGG | + | tig0020227:567-586 | Msa1378850:intergenic | 40.0% | |
| GGAAAATTTGGTAGGTTTGG+AGG | - | tig0020227:620-639 | Msa1378850:intron | 40.0% | |
| CTGAAAAACATCATCGTGGA+GGG | + | tig0020227:708-727 | Msa1378850:intergenic | 40.0% | |
| TTCAATTCCTACCTTGGACA+CGG | + | tig0020227:762-781 | Msa1378850:intergenic | 40.0% | |
| AACCTTTGAGCATGATACAG+TGG | + | tig0020227:1192-1211 | Msa1378850:intergenic | 40.0% | |
| ! | AAAAGCAAGAATGGTGGGAA+AGG | - | tig0020227:1225-1244 | Msa1378850:intron | 40.0% |
| ! | AAAGCAAGAATGGTGGGAAA+GGG | - | tig0020227:1226-1245 | Msa1378850:intron | 40.0% |
| AGAGAGGATCTAAACCATAC+TGG | - | tig0020227:1267-1286 | Msa1378850:intron | 40.0% | |
| !! | CGGTCGAAAAAGTGTCATTA+CGG | - | tig0020227:1341-1360 | Msa1378850:CDS | 40.0% |
| !! | AAAACTTGCTTTGGAGTGCA+CGG | - | tig0020227:1410-1429 | Msa1378850:CDS | 40.0% |
| TGATTGTCTGTCCATGTCTT+TGG | + | tig0020227:1448-1467 | Msa1378850:intergenic | 40.0% | |
| ATTAAATCTGGGCCACACAA+AGG | + | tig0020227:1808-1827 | Msa1378850:intergenic | 40.0% | |
| TTAAATCTGGGCCACACAAA+GGG | + | tig0020227:1807-1826 | Msa1378850:intergenic | 40.0% | |
| ATTAAATCTGGGCCACACAA+AGG | + | tig0020227:1808-1827 | Msa1378850:intergenic | 40.0% | |
| GTCACCGTGACATTAAATCT+GGG | + | tig0020227:1879-1898 | Msa1378850:intergenic | 40.0% | |
| TGTCACCGTGACATTAAATC+TGG | + | tig0020227:1880-1899 | Msa1378850:intergenic | 40.0% | |
| GGTTACGAGGATCATAACTA+TGG | + | tig0020227:1924-1943 | Msa1378850:intergenic | 40.0% | |
| AGTTATGATCCTCGTAACCA+AGG | - | tig0020227:1925-1944 | Msa1378850:intron | 40.0% | |
| TAGTTAAGCAGGACTTTCCT+TGG | + | tig0020227:1945-1964 | Msa1378850:intergenic | 40.0% | |
| AATGTTAAACGGTGCCCTTT+GGG | - | tig0020227:1984-2003 | Msa1378850:intron | 40.0% | |
| TTGCTTAACCAATGCCCAAA+GGG | + | tig0020227:2001-2020 | Msa1378850:intergenic | 40.0% | |
| TTTGCTTAACCAATGCCCAA+AGG | + | tig0020227:2002-2021 | Msa1378850:intergenic | 40.0% | |
| !! | ACCAAATGGGTCTTGTTAAC+CGG | + | tig0020227:2151-2170 | Msa1378850:intergenic | 40.0% |
| AAGACCCATTTGGTCCTAAA+GGG | - | tig0020227:2157-2176 | Msa1378850:intron | 40.0% | |
| TGAGAATATCTTAGTGGCAC+GGG | - | tig0020227:2189-2208 | Msa1378850:intron | 40.0% | |
| !! | TATCCGTGCACCATTTTTAG+AGG | - | tig0020227:2241-2260 | Msa1378850:intron | 40.0% |
| ! | ATGCCTCTAAAAATGGTGCA+CGG | + | tig0020227:2247-2266 | Msa1378850:intergenic | 40.0% |
| ATCGATCATGCTTTGTGGTT+TGG | - | tig0020227:2472-2491 | Msa1378850:intron | 40.0% | |
| !! | ATCATGCTTTGTGGTTTGGT+GGG | - | tig0020227:2476-2495 | Msa1378850:intron | 40.0% |
| TGAAATTCACGTACCATGGT+AGG | + | tig0020227:2739-2758 | Msa1378850:intergenic | 40.0% | |
| CATGGTACGTGAATTTCAGT+CGG | - | tig0020227:2741-2760 | Msa1378850:intron | 40.0% | |
| GTGAATTTCAGTCGGTGATT+GGG | - | tig0020227:2749-2768 | Msa1378850:intron | 40.0% | |
| !! | ATTGTTGCAAGTGTTGGAAC+AGG | - | tig0020227:2823-2842 | Msa1378850:intron | 40.0% |
| GGAACAGGTTCAAATGCTTT+AGG | - | tig0020227:2838-2857 | Msa1378850:intron | 40.0% | |
| CTGTGTCTGATAGAAACTCA+TGG | + | tig0020227:2870-2889 | Msa1378850:intergenic | 40.0% | |
| GACACAGATGTGAGATTGAT+TGG | - | tig0020227:2883-2902 | Msa1378850:intron | 40.0% | |
| ACTTTGGCCAAAGGAGAAAT+GGG | - | tig0020227:2952-2971 | Msa1378850:CDS | 40.0% | |
| GGAGAAATGGGTGTTTATCA+TGG | - | tig0020227:2964-2983 | Msa1378850:CDS | 40.0% | |
| TCACGAGGACAATCAAAAGT+TGG | + | tig0020227:3447-3466 | Msa1378850:intergenic | 40.0% | |
| !!! | ATCTTTTTTTGGTAGTGGCC+GGG | + | tig0020227:3527-3546 | Msa1378850:intergenic | 40.0% |
| !!! | GATCTTTTTTTGGTAGTGGC+CGG | + | tig0020227:3528-3547 | Msa1378850:intergenic | 40.0% |
| !!! | GTCTTTTTTTGGTAGTGGCA+GGG | + | tig0020227:3611-3630 | Msa1378850:intergenic | 40.0% |
| TCTTTGTGGAAACTCAACTC+TGG | + | tig0020227:3797-3816 | Msa1378850:intergenic | 40.0% | |
| ACCATCAAGAGCTTCTTCAT+CGG | + | tig0020227:3849-3868 | Msa1378850:intergenic | 40.0% | |
| CGAGAGATTATGCAAATTGG+AGG | - | tig0020227:4182-4201 | Msa1378850:five_prime_UTR | 40.0% | |
| GGGTATATTTCCATCTCTAG+AGG | - | tig0020227:4203-4222 | Msa1378850:five_prime_UTR | 40.0% | |
| !! | GTTGTAAATTGTAGTGGACG+TGG | - | tig0020227:4291-4310 | Msa1378850:five_prime_UTR | 40.0% |
| ! | CTAATTTACATGGCGGAGCT+AGG | + | tig0020227:178-197 | Msa1378850:intergenic | 45.0% |
| TGCTTAACCCACGTCAAAGA+TGG | - | tig0020227:198-217 | Msa1378850:intron | 45.0% | |
| GCTTAACCCACGTCAAAGAT+GGG | - | tig0020227:199-218 | Msa1378850:intron | 45.0% | |
| CTTAACCCACGTCAAAGATG+GGG | - | tig0020227:200-219 | Msa1378850:intron | 45.0% | |
| TTGTACCCCATCTTTGACGT+GGG | + | tig0020227:208-227 | Msa1378850:intergenic | 45.0% | |
| ATGGCCGCATGTAAATTGCA+AGG | - | tig0020227:392-411 | Msa1378850:intron | 45.0% | |
| ! | AGGCAAGGGTGTATATGTAG+TGG | + | tig0020227:534-553 | Msa1378850:intergenic | 45.0% |
| !! | AAGGGTATTGTGGAAGGCAA+GGG | + | tig0020227:548-567 | Msa1378850:intergenic | 45.0% |
| CCAGTAGAAGTGGTATCTTC+TGG | + | tig0020227:602-621 | Msa1378850:intergenic | 45.0% | |
| CCAGAAGATACCACTTCTAC+TGG | - | tig0020227:599-618 | Msa1378850:intron | 45.0% | |
| CCTGAAAAACATCATCGTGG+AGG | + | tig0020227:709-728 | Msa1378850:intergenic | 45.0% | |
| ! | CCTCCACGATGATGTTTTTC+AGG | - | tig0020227:706-725 | Msa1378850:intron | 45.0% |
| CACCACTGTATCATGCTCAA+AGG | - | tig0020227:1187-1206 | Msa1378850:intron | 45.0% | |
| TCATCTTGTGAGAGCCAGTA+TGG | + | tig0020227:1284-1303 | Msa1378850:intergenic | 45.0% | |
| !! | AAAAGTGTCATTACGGCCAC+CGG | - | tig0020227:1348-1367 | Msa1378850:CDS | 45.0% |
| ! | TGCATGCGCAAAACTTGCTT+TGG | - | tig0020227:1401-1420 | Msa1378850:CDS | 45.0% |
| ! | TTTGGAGTGCACGGTCTTTA+TGG | - | tig0020227:1419-1438 | Msa1378850:CDS | 45.0% |
| CTTTATGGCTGCCAAAGACA+TGG | - | tig0020227:1434-1453 | Msa1378850:CDS | 45.0% | |
| !! | GTACGGTTGATGAAGCTCTT+AGG | - | tig0020227:1474-1493 | Msa1378850:CDS | 45.0% |
| GATGAAGCTCTTAGGAGCTA+AGG | - | tig0020227:1482-1501 | Msa1378850:CDS | 45.0% | |
| TGTCACCGTGACATCAAATC+TGG | - | tig0020227:1767-1786 | Msa1378850:intron | 45.0% | |
| GTCACCGTGACATCAAATCT+GGG | - | tig0020227:1768-1787 | Msa1378850:intron | 45.0% | |
| ! | ACACAAAGGTGTGTGTTGTG+TGG | + | tig0020227:1794-1813 | Msa1378850:intergenic | 45.0% |
| ACACAACACACACCTTTGTG+TGG | - | tig0020227:1793-1812 | Msa1378850:intron | 45.0% | |
| TGTCACCCATACAACACATC+TGG | - | tig0020227:1827-1846 | Msa1378850:intron | 45.0% | |
| GTCACCCATACAACACATCT+GGG | - | tig0020227:1828-1847 | Msa1378850:intron | 45.0% | |
| GTGGCCCAGATTTAATGTCA+CGG | - | tig0020227:1812-1831 | Msa1378850:intron | 45.0% | |
| GAATGTTAAACGGTGCCCTT+TGG | - | tig0020227:1983-2002 | Msa1378850:intron | 45.0% | |
| CAAGACCCATTTGGTCCTAA+AGG | - | tig0020227:2156-2175 | Msa1378850:intron | 45.0% | |
| AGACCCATTTGGTCCTAAAG+GGG | - | tig0020227:2158-2177 | Msa1378850:intron | 45.0% | |
| ATTCCTTCCATCCATGCTCT+GGG | + | tig0020227:2218-2237 | Msa1378850:intergenic | 45.0% | |
| ! | GATCATGCTTTGTGGTTTGG+TGG | - | tig0020227:2475-2494 | Msa1378850:intron | 45.0% |
| !! | TCATGCTTTGTGGTTTGGTG+GGG | - | tig0020227:2477-2496 | Msa1378850:intron | 45.0% |
| ! | ATCAGAGGCTTTTCGCTGTT+GGG | - | tig0020227:2654-2673 | Msa1378850:intron | 45.0% |
| GAAAACAGCTACCACTTGTC+AGG | - | tig0020227:2688-2707 | Msa1378850:intron | 45.0% | |
| CGACTGAAATTCACGTACCA+TGG | + | tig0020227:2743-2762 | Msa1378850:intergenic | 45.0% | |
| CGTGAATTTCAGTCGGTGAT+TGG | - | tig0020227:2748-2767 | Msa1378850:intron | 45.0% | |
| CGGTGATTGGGAAAGAAACA+AGG | - | tig0020227:2761-2780 | Msa1378850:intron | 45.0% | |
| CAAGCATGGAAAAAATGGGG+AGG | - | tig0020227:2787-2806 | Msa1378850:intron | 45.0% | |
| TTGATTGGAGTTGAAGCTGC+TGG | - | tig0020227:2898-2917 | Msa1378850:CDS | 45.0% | |
| !! | GAGTTGAAGCTGCTGGTTTA+GGG | - | tig0020227:2905-2924 | Msa1378850:CDS | 45.0% |
| ! | GCTGGTTTAGGGTTAGATAG+TGG | - | tig0020227:2916-2935 | Msa1378850:CDS | 45.0% |
| CATTCTTCCACTTTGGCCAA+AGG | - | tig0020227:2943-2962 | Msa1378850:CDS | 45.0% | |
| CATTTCTCCTTTGGCCAAAG+TGG | + | tig0020227:2953-2972 | Msa1378850:intergenic | 45.0% | |
| CACTTTGGCCAAAGGAGAAA+TGG | - | tig0020227:2951-2970 | Msa1378850:CDS | 45.0% | |
| !!! | TCTTTTTTTGGTAGTGGCCG+GGG | + | tig0020227:3526-3545 | Msa1378850:intergenic | 45.0% |
| !!! | GGTCTTTTTTTGGTAGTGGC+AGG | + | tig0020227:3612-3631 | Msa1378850:intergenic | 45.0% |
| ! | ATTTACAGGATGGAGTACCC+AGG | - | tig0020227:3764-3783 | Msa1378850:CDS | 45.0% |
| ACCGATGAAGAAGCTCTTGA+TGG | - | tig0020227:3845-3864 | Msa1378850:CDS | 45.0% | |
| !!! | ATATGTTTTTAAATTTAAAT+TGG | + | tig0020227:1003-1022 | Msa1378850:intergenic | 5.0% |
| !! | TTCAAAAAAAAAAAATTTAT+TGG | + | tig0020227:1573-1592 | Msa1378850:intergenic | 5.0% |
| !!! | TAATTATATAATGATTATTT+TGG | + | tig0020227:2573-2592 | Msa1378850:intergenic | 5.0% |
| !!! | TTAAAAAAATAATTTTTCAT+TGG | - | tig0020227:3302-3321 | Msa1378850:intron | 5.0% |
| !!! | TTTTTTTTTTAATTATTTAC+AGG | - | tig0020227:3750-3769 | Msa1378850:CDS | 5.0% |
| GTTGTACCCCATCTTTGACG+TGG | + | tig0020227:209-228 | Msa1378850:intergenic | 50.0% | |
| ! | TGGAGGCGTGTTAGACTGTT+TGG | + | tig0020227:231-250 | Msa1378850:intergenic | 50.0% |
| ACCGCAGAGTTTCGCTCTTT+GGG | + | tig0020227:458-477 | Msa1378850:intergenic | 50.0% | |
| !! | CAAGGGTATTGTGGAAGGCA+AGG | + | tig0020227:549-568 | Msa1378850:intergenic | 50.0% |
| GAAGGACAATACCGTGTCCA+AGG | - | tig0020227:748-767 | Msa1378850:intron | 50.0% | |
| GACAATACCGTGTCCAAGGT+AGG | - | tig0020227:752-771 | Msa1378850:intron | 50.0% | |
| GCTATGATTGCCAAGCGCAT+CGG | - | tig0020227:1321-1340 | Msa1378850:intron | 50.0% | |
| !!! | ACTTTTTCGACCGATGCGCT+TGG | + | tig0020227:1334-1353 | Msa1378850:intergenic | 50.0% |
| AAGCCCATGATGTCCTGAAC+CGG | + | tig0020227:1370-1389 | Msa1378850:intergenic | 50.0% | |
| GTGGCCCAGATTTGATGTCA+CGG | + | tig0020227:1775-1794 | Msa1378850:intergenic | 50.0% | |
| GTGGCCCAGATGTGTTGTAT+GGG | + | tig0020227:1835-1854 | Msa1378850:intergenic | 50.0% | |
| TGTGGCCCAGATGTGTTGTA+TGG | + | tig0020227:1836-1855 | Msa1378850:intergenic | 50.0% | |
| ACACAAAGGGTTGTGCTGTG+TGG | + | tig0020227:1854-1873 | Msa1378850:intergenic | 50.0% | |
| ACACAGCACAACCCTTTGTG+TGG | - | tig0020227:1853-1872 | Msa1378850:intron | 50.0% | |
| CAGGACTTTCCTTGGTTACG+AGG | + | tig0020227:1937-1956 | Msa1378850:intergenic | 50.0% | |
| GCCGGTTAACAAGACCCATT+TGG | - | tig0020227:2147-2166 | Msa1378850:intron | 50.0% | |
| !! | TCGCCCCTTTAGGACCAAAT+GGG | + | tig0020227:2164-2183 | Msa1378850:intergenic | 50.0% |
| !! | ATCGCCCCTTTAGGACCAAA+TGG | + | tig0020227:2165-2184 | Msa1378850:intergenic | 50.0% |
| !! | TCTCAAAGCATCGCCCCTTT+AGG | + | tig0020227:2174-2193 | Msa1378850:intergenic | 50.0% |
| CATTCCTTCCATCCATGCTC+TGG | + | tig0020227:2219-2238 | Msa1378850:intergenic | 50.0% | |
| CAGAGCATGGATGGAAGGAA+TGG | - | tig0020227:2217-2236 | Msa1378850:intron | 50.0% | |
| !! | CATGCTTTGTGGTTTGGTGG+GGG | - | tig0020227:2478-2497 | Msa1378850:intron | 50.0% |
| ! | CATCAGAGGCTTTTCGCTGT+TGG | - | tig0020227:2653-2672 | Msa1378850:intron | 50.0% |
| CTACCACTTGTCAGGTTCAG+CGG | - | tig0020227:2696-2715 | Msa1378850:intron | 50.0% | |
| ACCACATCCATGTCCTACCA+TGG | - | tig0020227:2723-2742 | Msa1378850:intron | 50.0% | |
| ACCATGGTAGGACATGGATG+TGG | + | tig0020227:2727-2746 | Msa1378850:intergenic | 50.0% | |
| TCACGTACCATGGTAGGACA+TGG | + | tig0020227:2733-2752 | Msa1378850:intergenic | 50.0% | |
| !! | GGAGTTGAAGCTGCTGGTTT+AGG | - | tig0020227:2904-2923 | Msa1378850:CDS | 50.0% |
| AACCTCACTCCATTGCAGCT+GGG | - | tig0020227:3031-3050 | Msa1378850:CDS | 50.0% | |
| TGTGACTTACCCAGCTGCAA+TGG | + | tig0020227:3043-3062 | Msa1378850:intergenic | 50.0% | |
| TGAGCGTAGCTCAGTTGGTT+GGG | - | tig0020227:3464-3483 | Msa1378850:intron | 50.0% | |
| TCAACTCTGGACCAACTCCT+GGG | + | tig0020227:3784-3803 | Msa1378850:intergenic | 50.0% | |
| TCTAGAGGCAGCACATGCAT+TGG | - | tig0020227:4218-4237 | Msa1378850:five_prime_UTR | 50.0% | |
| TGGACGTGGAGACAAAGATG+CGG | - | tig0020227:4305-4324 | Msa1378850:five_prime_UTR | 50.0% | |
| ! | TACTTGGTGGTCGACGCAAC+TGG | + | tig0020227:251-270 | Msa1378850:intergenic | 55.0% |
| GCCCAAAGAGCGAAACTCTG+CGG | - | tig0020227:454-473 | Msa1378850:intron | 55.0% | |
| CACCGCAGAGTTTCGCTCTT+TGG | + | tig0020227:459-478 | Msa1378850:intergenic | 55.0% | |
| CAAAGAGCGAAACTCTGCGG+TGG | - | tig0020227:457-476 | Msa1378850:intron | 55.0% | |
| !! | CTGTTGCTAGCTCTGCCTGT+GGG | + | tig0020227:1140-1159 | Msa1378850:intergenic | 55.0% |
| !! | CCACCGGTTCAGGACATCAT+GGG | - | tig0020227:1364-1383 | Msa1378850:CDS | 55.0% |
| AAACGGTGCCCTTTGGGCAT+TGG | - | tig0020227:1990-2009 | Msa1378850:intron | 55.0% | |
| TTGTTAACCGGCGCCTCTTG+GGG | + | tig0020227:2139-2158 | Msa1378850:intergenic | 55.0% | |
| CTTGTTAACCGGCGCCTCTT+GGG | + | tig0020227:2140-2159 | Msa1378850:intergenic | 55.0% | |
| TCTTGTTAACCGGCGCCTCT+TGG | + | tig0020227:2141-2160 | Msa1378850:intergenic | 55.0% | |
| TAGCCCAGAGCATGGATGGA+AGG | - | tig0020227:2212-2231 | Msa1378850:intron | 55.0% | |
| ! | GAGGCTTTTCGCTGTTGGGT+TGG | - | tig0020227:2658-2677 | Msa1378850:intron | 55.0% |
| !! | TCGCTGTTGGGTTGGAGACT+TGG | - | tig0020227:2666-2685 | Msa1378850:intron | 55.0% |
| CACTTGTCAGGTTCAGCGGT+GGG | - | tig0020227:2700-2719 | Msa1378850:intron | 55.0% | |
| GAACCTCACTCCATTGCAGC+TGG | - | tig0020227:3030-3049 | Msa1378850:CDS | 55.0% | |
| TACCCAGCTGCAATGGAGTG+AGG | + | tig0020227:3036-3055 | Msa1378850:intergenic | 55.0% | |
| GTGAGCGTAGCTCAGTTGGT+TGG | - | tig0020227:3463-3482 | Msa1378850:intron | 55.0% | |
| ! | AGGATGGAGTACCCAGGAGT+TGG | - | tig0020227:3770-3789 | Msa1378850:CDS | 55.0% |
| CTCAACTCTGGACCAACTCC+TGG | + | tig0020227:3785-3804 | Msa1378850:intergenic | 55.0% | |
| CTGCACGCCCACTTTCTTTG+TGG | + | tig0020227:3811-3830 | Msa1378850:intergenic | 55.0% | |
| ! | GCATGTGCTGCCTCTAGAGA+TGG | + | tig0020227:4216-4235 | Msa1378850:intergenic | 55.0% |
| ! | TTGGTGGTCGACGCAACTGG+AGG | + | tig0020227:248-267 | Msa1378850:intergenic | 60.0% |
| CTCTGCGGTGGTTCAAGCAG+TGG | - | tig0020227:469-488 | Msa1378850:intron | 60.0% | |
| !! | GCTGTTGCTAGCTCTGCCTG+TGG | + | tig0020227:1141-1160 | Msa1378850:intergenic | 60.0% |
| !! | GTCATTACGGCCACCGGTTC+AGG | - | tig0020227:1354-1373 | Msa1378850:CDS | 60.0% |
| !! | GCCACCGGTTCAGGACATCA+TGG | - | tig0020227:1363-1382 | Msa1378850:CDS | 60.0% |
| CCCATGATGTCCTGAACCGG+TGG | + | tig0020227:1367-1386 | Msa1378850:intergenic | 60.0% | |
| TGTTAACCGGCGCCTCTTGG+GGG | + | tig0020227:2138-2157 | Msa1378850:intergenic | 60.0% | |
| CCACCGCTGAACCTGACAAG+TGG | + | tig0020227:2702-2721 | Msa1378850:intergenic | 60.0% | |
| CCACTTGTCAGGTTCAGCGG+TGG | - | tig0020227:2699-2718 | Msa1378850:intron | 60.0% | |
| CCAACTGAGCTACGCTCACG+AGG | + | tig0020227:3462-3481 | Msa1378850:intergenic | 60.0% | |
| CCTCGTGAGCGTAGCTCAGT+TGG | - | tig0020227:3459-3478 | Msa1378850:intron | 60.0% | |
| TATGCCCGGGGTTCAAACCC+CGG | - | tig0020227:3506-3525 | Msa1378850:intron | 60.0% | |
| CGGGTAGCCCAGAGCATGGA+TGG | - | tig0020227:2208-2227 | Msa1378850:intron | 65.0% | |
| AGTGGCCGGGGTTTGAACCC+CGG | + | tig0020227:3514-3533 | Msa1378850:intergenic | 65.0% | |
| CTAGTGCCCCAGCCCCCAAG+AGG | - | tig0020227:2123-2142 | Msa1378850:intron | 70.0% | |
| GGCACGGGTAGCCCAGAGCA+TGG | - | tig0020227:2204-2223 | Msa1378850:intron | 70.0% | |
| GTGGCCGGGGTTTGAACCCC+GGG | + | tig0020227:3513-3532 | Msa1378850:intergenic | 70.0% | |
| ACCGGCGCCTCTTGGGGGCT+GGG | + | tig0020227:2133-2152 | Msa1378850:intergenic | 75.0% | |
| AACCGGCGCCTCTTGGGGGC+TGG | + | tig0020227:2134-2153 | Msa1378850:intergenic | 75.0% | |
| ! | CCGGCGCCTCTTGGGGGCTG+GGG | + | tig0020227:2132-2151 | Msa1378850:intergenic | 80.0% |
| !! | CCCCAGCCCCCAAGAGGCGC+CGG | - | tig0020227:2129-2148 | Msa1378850:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020227 | gene | 1 | 4387 | 1 | ID=Msa1378850;Name=Msa1378850 |
| tig0020227 | mRNA | 1 | 4387 | 1 | ID=Msa1378850-mRNA-1;Parent=Msa1378850;Name=Msa1378850-mRNA-1;_AED=0.06;_eAED=0.06;_QI=369|1|1|1|0.8|0.66|6|34|466 |
| tig0020227 | exon | 1 | 210 | 1 | ID=Msa1378850-mRNA-1:exon:6238;Parent=Msa1378850-mRNA-1 |
| tig0020227 | exon | 522 | 616 | 522 | ID=Msa1378850-mRNA-1:exon:6237;Parent=Msa1378850-mRNA-1 |
| tig0020227 | exon | 1336 | 1769 | 1336 | ID=Msa1378850-mRNA-1:exon:6236;Parent=Msa1378850-mRNA-1 |
| tig0020227 | exon | 2885 | 3244 | 2885 | ID=Msa1378850-mRNA-1:exon:6235;Parent=Msa1378850-mRNA-1 |
| tig0020227 | exon | 3661 | 4156 | 3661 | ID=Msa1378850-mRNA-1:exon:6234;Parent=Msa1378850-mRNA-1 |
| tig0020227 | exon | 4179 | 4387 | 4179 | ID=Msa1378850-mRNA-1:exon:6233;Parent=Msa1378850-mRNA-1 |
| tig0020227 | five_prime_UTR | 4179 | 4387 | 4179 | ID=Msa1378850-mRNA-1:five_prime_utr;Parent=Msa1378850-mRNA-1 |
| tig0020227 | five_prime_UTR | 3997 | 4156 | 3997 | ID=Msa1378850-mRNA-1:five_prime_utr;Parent=Msa1378850-mRNA-1 |
| tig0020227 | CDS | 3661 | 3996 | 3661 | ID=Msa1378850-mRNA-1:cds;Parent=Msa1378850-mRNA-1 |
| tig0020227 | CDS | 2885 | 3244 | 2885 | ID=Msa1378850-mRNA-1:cds;Parent=Msa1378850-mRNA-1 |
| tig0020227 | CDS | 1336 | 1769 | 1336 | ID=Msa1378850-mRNA-1:cds;Parent=Msa1378850-mRNA-1 |
| tig0020227 | CDS | 522 | 616 | 522 | ID=Msa1378850-mRNA-1:cds;Parent=Msa1378850-mRNA-1 |
| tig0020227 | CDS | 35 | 210 | 35 | ID=Msa1378850-mRNA-1:cds;Parent=Msa1378850-mRNA-1 |
| tig0020227 | three_prime_UTR | 1 | 34 | 1 | ID=Msa1378850-mRNA-1:three_prime_utr;Parent=Msa1378850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
