AlfalfaGEDB | Msa0751790

M. sativa cultivar zhongmu-4 / Msa0751790

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0751790	A0A396I7L4	90.972	144	13	0	3	146	5	148	6.74e-80	245

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0711340	Msa0751790	0.814535	1.466518e-51	-8.615850e-47
Msa0751790	Msa0751800	0.994712	1.497802e-209	-8.615850e-47
Msa0751790	Msa0794260	0.802107	6.562003e-49	-8.615850e-47
Msa0751790	Msa0831970	0.819831	9.446469e-53	-8.615850e-47
Msa0751790	Msa1438250	0.823905	1.076738e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0751790	MtrunA17_Chr4g0029871	90.972	144	13	3	146	5	148	1.30e-83	245
Msa0751790	MtrunA17_Chr1g0176161	90.244	164	16	3	166	346	509	1.28e-80	248
Msa0751790	MtrunA17_Chr7g0219321	86.022	93	13	1	93	25	117	1.62e-46	148
Msa0751790	MtrunA17_Chr4g0025081	90.141	71	7	3	73	419	489	5.64e-41	144

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 50 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAATTGCTGGCCAAAC+AGG	0.407225	5_2:-5270198	Msa0751790:CDS
AAGGGAATTTCTGGATATGA+TGG	0.474904	5_2:+5270488	None:intergenic
AATGAGAAAACTCAAAAGGA+TGG	0.571124	5_2:-5270168	Msa0751790:CDS
AATGATACAACGAATGAACC+AGG	0.652325	5_2:-5270276	Msa0751790:CDS
AATTCAAGTTTAACGGGGAA+GGG	0.515437	5_2:+5270470	None:intergenic
ACAACGAATGAACCAGGAGT+TGG	0.549466	5_2:-5270270	Msa0751790:CDS
AGAATTGAAGAATGAGTTAA+AGG	0.230787	5_2:-5270216	Msa0751790:CDS
AGGAAATGAGAAAACTCAAA+AGG	0.492661	5_2:-5270172	Msa0751790:CDS
ATCATTGCTTGCATCTCAAG+AGG	0.574336	5_2:+5270293	None:intergenic
ATCTCCATGTACCACATTGC+CGG	0.408976	5_2:+5270367	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAACTTGAATTATGGGCAA+AGG	-	chr5_2:5270605-5270624	Msa0751790:intron	30.0%
AGGAAATGAGAAAACTCAAA+AGG	-	chr5_2:5270892-5270911	Msa0751790:intron	30.0%
AATGAGAAAACTCAAAAGGA+TGG	-	chr5_2:5270896-5270915	Msa0751790:intron	30.0%
TAAACTTGAATTATGGGCAA+AGG	-	chr5_2:5270605-5270624	Msa0751790:intron	30.0%
AGGAAATGAGAAAACTCAAA+AGG	-	chr5_2:5270892-5270911	Msa0751790:intron	30.0%
AATGAGAAAACTCAAAAGGA+TGG	-	chr5_2:5270896-5270915	Msa0751790:intron	30.0%
ACAGCAACAGAAAAACAGTT+GGG	+	chr5_2:5270197-5270216	None:intergenic	35.0%
AACAGCAACAGAAAAACAGT+TGG	+	chr5_2:5270198-5270217	None:intergenic	35.0%
TGTTAGCAGATTTCTTAGGT+TGG	-	chr5_2:5270288-5270307	Msa0751790:CDS	35.0%
TCCCCGTTAAACTTGAATTA+TGG	-	chr5_2:5270598-5270617	Msa0751790:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	5270016	5271070	5270016	ID=Msa0751790;Name=Msa0751790
chr5_2	mRNA	5270016	5271070	5270016	ID=Msa0751790-mRNA-1;Parent=Msa0751790;Name=Msa0751790-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|183
chr5_2	exon	5271065	5271070	5271065	ID=Msa0751790-mRNA-1:exon:2126;Parent=Msa0751790-mRNA-1
chr5_2	exon	5270016	5270561	5270016	ID=Msa0751790-mRNA-1:exon:2125;Parent=Msa0751790-mRNA-1
chr5_2	CDS	5271065	5271070	5271065	ID=Msa0751790-mRNA-1:cds;Parent=Msa0751790-mRNA-1
chr5_2	CDS	5270016	5270561	5270016	ID=Msa0751790-mRNA-1:cds;Parent=Msa0751790-mRNA-1

Gene Sequence

>Msa0751790

ATGATGGCAGCTTATCGCACGAATGCAGCAGAGTTTTTGAAGGAGAATCTTGAGATTCCATCATATCCAGAAATTCCCTTCCCCGTTAAACTTGAATTATGGGCAAAGGCTGGAGAAAAAGGAAGACCGGATGGAGGAAAAGGAAGACCGGGTAGAATATACGGTCTTGGGCCATTAGCCGGCAATGTGGTACATGGAGATTTGTTCTATGTTCCTCCTCCACCAGAGTCCTCATCTCATTCTAGAGAGTTGCCTCTTGAGATGCAAGCAATGATACAACGAATGAACCAGGAGTTGGAATCTCAAAAGGAGGTGTTGGCAAAGAAAGAAGAATTGAAGAATGAGTTAAAGGAATTGCTGGCCAAACAGGCAGAGGAAATGAGAAAACTCAAAAGGATGGCTACAAAAAGGATGGGTGGCATGAAGAGTAGGAAGACGTCTGAATCATCGTCGCCATCGAGTCAATCATCACCGTCAGTTCAAGAAGACCGAACACATGACGACGAAAATGATGATGAGGACGAGGAGAGGGATGATGATCATAGCGAGTAA

Protein sequence

>Msa0751790

MMAAYRTNAAEFLKENLEIPSYPEIPFPVKLELWAKAGEKGRPDGGKGRPGRIYGLGPLAGNVVHGDLFYVPPPPESSSHSRELPLEMQAMIQRMNQELESQKEVLAKKEELKNELKELLAKQAEEMRKLKRMATKRMGGMKSRKTSESSSPSSQSSPSVQEDRTHDDENDDEDEERDDDHSE*