Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0751790 | A0A396I7L4 | 90.972 | 144 | 13 | 0 | 3 | 146 | 5 | 148 | 6.74e-80 | 245 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0711340 | Msa0751790 | 0.814535 | 1.466518e-51 | -8.615850e-47 |
| Msa0751790 | Msa0751800 | 0.994712 | 1.497802e-209 | -8.615850e-47 |
| Msa0751790 | Msa0794260 | 0.802107 | 6.562003e-49 | -8.615850e-47 |
| Msa0751790 | Msa0831970 | 0.819831 | 9.446469e-53 | -8.615850e-47 |
| Msa0751790 | Msa1438250 | 0.823905 | 1.076738e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0751790 | MtrunA17_Chr4g0029871 | 90.972 | 144 | 13 | 0 | 3 | 146 | 5 | 148 | 1.30e-83 | 245 |
| Msa0751790 | MtrunA17_Chr1g0176161 | 90.244 | 164 | 16 | 0 | 3 | 166 | 346 | 509 | 1.28e-80 | 248 |
| Msa0751790 | MtrunA17_Chr7g0219321 | 86.022 | 93 | 13 | 0 | 1 | 93 | 25 | 117 | 1.62e-46 | 148 |
| Msa0751790 | MtrunA17_Chr4g0025081 | 90.141 | 71 | 7 | 0 | 3 | 73 | 419 | 489 | 5.64e-41 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCCGTTAAACTTGAATTA+TGG | 0.156112 | 5_2:-5270466 | Msa0751790:CDS |
| TTAACGGGGAAGGGAATTTC+TGG | 0.210406 | 5_2:+5270479 | None:intergenic |
| AGAATTGAAGAATGAGTTAA+AGG | 0.230787 | 5_2:-5270216 | Msa0751790:CDS |
| CCCCGTTAAACTTGAATTAT+GGG | 0.265925 | 5_2:-5270465 | Msa0751790:CDS |
| TCTCATTTCCTCTGCCTGTT+TGG | 0.282668 | 5_2:+5270184 | None:intergenic |
| TGGGCAAAGGCTGGAGAAAA+AGG | 0.320847 | 5_2:-5270446 | Msa0751790:CDS |
| GCCCATAATTCAAGTTTAAC+GGG | 0.343194 | 5_2:+5270464 | None:intergenic |
| TCAAAAGGATGGCTACAAAA+AGG | 0.355846 | 5_2:-5270157 | Msa0751790:CDS |
| TGCCCATAATTCAAGTTTAA+CGG | 0.375309 | 5_2:+5270463 | None:intergenic |
| TGTACCACATTGCCGGCTAA+TGG | 0.387321 | 5_2:+5270374 | None:intergenic |
| AAAGGAATTGCTGGCCAAAC+AGG | 0.407225 | 5_2:-5270198 | Msa0751790:CDS |
| ATCTCCATGTACCACATTGC+CGG | 0.408976 | 5_2:+5270367 | None:intergenic |
| CCGGGTAGAATATACGGTCT+TGG | 0.429236 | 5_2:-5270398 | Msa0751790:CDS |
| GGAAGACCGGATGGAGGAAA+AGG | 0.440236 | 5_2:-5270425 | Msa0751790:CDS |
| GAATGAGTTAAAGGAATTGC+TGG | 0.445931 | 5_2:-5270207 | Msa0751790:CDS |
| GGAAGACCGGGTAGAATATA+CGG | 0.465058 | 5_2:-5270404 | Msa0751790:CDS |
| AAGGGAATTTCTGGATATGA+TGG | 0.474904 | 5_2:+5270488 | None:intergenic |
| CCAGGAGTTGGAATCTCAAA+AGG | 0.479857 | 5_2:-5270258 | Msa0751790:CDS |
| AGGAAATGAGAAAACTCAAA+AGG | 0.492661 | 5_2:-5270172 | Msa0751790:CDS |
| CTTGAATTATGGGCAAAGGC+TGG | 0.496169 | 5_2:-5270455 | Msa0751790:CDS |
| CGGGTAGAATATACGGTCTT+GGG | 0.498203 | 5_2:-5270397 | Msa0751790:CDS |
| TACGGTCTTGGGCCATTAGC+CGG | 0.503522 | 5_2:-5270386 | Msa0751790:CDS |
| TAATTCAAGTTTAACGGGGA+AGG | 0.508106 | 5_2:+5270469 | None:intergenic |
| GGATGGGTGGCATGAAGAGT+AGG | 0.508484 | 5_2:-5270136 | Msa0751790:CDS |
| TGATGATGAGGACGAGGAGA+GGG | 0.515380 | 5_2:-5270036 | Msa0751790:CDS |
| AATTCAAGTTTAACGGGGAA+GGG | 0.515437 | 5_2:+5270470 | None:intergenic |
| GGAATCTCAAAAGGAGGTGT+TGG | 0.528815 | 5_2:-5270249 | Msa0751790:CDS |
| GATGAGGACTCTGGTGGAGG+AGG | 0.536279 | 5_2:+5270332 | None:intergenic |
| ATTGCTGGCCAAACAGGCAG+AGG | 0.545974 | 5_2:-5270192 | Msa0751790:CDS |
| ATGATGATGAGGACGAGGAG+AGG | 0.549464 | 5_2:-5270037 | Msa0751790:CDS |
| ACAACGAATGAACCAGGAGT+TGG | 0.549466 | 5_2:-5270270 | Msa0751790:CDS |
| TAAACTTGAATTATGGGCAA+AGG | 0.553794 | 5_2:-5270459 | Msa0751790:CDS |
| TTAGCCGGCAATGTGGTACA+TGG | 0.555469 | 5_2:-5270371 | Msa0751790:CDS |
| GGATGGAGGAAAAGGAAGAC+CGG | 0.558193 | 5_2:-5270417 | Msa0751790:CDS |
| TGAGATGAGGACTCTGGTGG+AGG | 0.559280 | 5_2:+5270329 | None:intergenic |
| CTAGAATGAGATGAGGACTC+TGG | 0.559382 | 5_2:+5270323 | None:intergenic |
| AATGAGAAAACTCAAAAGGA+TGG | 0.571124 | 5_2:-5270168 | Msa0751790:CDS |
| ATCATTGCTTGCATCTCAAG+AGG | 0.574336 | 5_2:+5270293 | None:intergenic |
| CGAAAATGATGATGAGGACG+AGG | 0.576903 | 5_2:-5270042 | Msa0751790:CDS |
| GACGGTGATGATTGACTCGA+TGG | 0.597029 | 5_2:+5270092 | None:intergenic |
| GTTCGGTCTTCTTGAACTGA+CGG | 0.599946 | 5_2:+5270074 | None:intergenic |
| CCCATAATTCAAGTTTAACG+GGG | 0.605328 | 5_2:+5270465 | None:intergenic |
| GAATGAGATGAGGACTCTGG+TGG | 0.616334 | 5_2:+5270326 | None:intergenic |
| CAACTCTCTAGAATGAGATG+AGG | 0.628554 | 5_2:+5270316 | None:intergenic |
| CCAAGACCGTATATTCTACC+CGG | 0.630274 | 5_2:+5270398 | None:intergenic |
| TGACGACGAAAATGATGATG+AGG | 0.640400 | 5_2:-5270048 | Msa0751790:CDS |
| GATGGAGGAAAAGGAAGACC+GGG | 0.640530 | 5_2:-5270416 | Msa0751790:CDS |
| AATGATACAACGAATGAACC+AGG | 0.652325 | 5_2:-5270276 | Msa0751790:CDS |
| GGAGTTGGAATCTCAAAAGG+AGG | 0.678192 | 5_2:-5270255 | Msa0751790:CDS |
| TGGGCCATTAGCCGGCAATG+TGG | 0.702771 | 5_2:-5270378 | Msa0751790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCTTTGATTTATTTTT+TGG | - | chr5_2:5270358-5270377 | Msa0751790:CDS | 10.0% |
| !!! | TATTTATTACTTTTCTTTAT+AGG | - | chr5_2:5270503-5270522 | Msa0751790:CDS | 10.0% |
| !!! | TTTTTCTTTGATTTATTTTT+TGG | - | chr5_2:5270358-5270377 | Msa0751790:CDS | 10.0% |
| !!! | TATTTATTACTTTTCTTTAT+AGG | - | chr5_2:5270503-5270522 | Msa0751790:CDS | 10.0% |
| !!! | ATATCATATTTTAGAAATAC+TGG | - | chr5_2:5270097-5270116 | Msa0751790:CDS | 15.0% |
| !!! | ATATCATATTTTAGAAATAC+TGG | - | chr5_2:5270097-5270116 | Msa0751790:CDS | 15.0% |
| !! | AAAAACATTCCAAAAATCTA+AGG | + | chr5_2:5270343-5270362 | None:intergenic | 20.0% |
| !!! | CTTTGATTTATTTTTTGGAT+TGG | - | chr5_2:5270363-5270382 | Msa0751790:CDS | 20.0% |
| !! | AAAAACATTCCAAAAATCTA+AGG | + | chr5_2:5270343-5270362 | None:intergenic | 20.0% |
| !!! | CTTTGATTTATTTTTTGGAT+TGG | - | chr5_2:5270363-5270382 | Msa0751790:CDS | 20.0% |
| ! | AGAATTGAAGAATGAGTTAA+AGG | - | chr5_2:5270848-5270867 | Msa0751790:intron | 25.0% |
| ! | AGAATTGAAGAATGAGTTAA+AGG | - | chr5_2:5270848-5270867 | Msa0751790:intron | 25.0% |
| !! | TTTTTCTGTTGCTGTTGTTT+TGG | - | chr5_2:5270202-5270221 | Msa0751790:CDS | 30.0% |
| ! | GTCTCATTACCTTAGATTTT+TGG | - | chr5_2:5270331-5270350 | Msa0751790:CDS | 30.0% |
| ! | TGCCCATAATTCAAGTTTAA+CGG | + | chr5_2:5270604-5270623 | None:intergenic | 30.0% |
| TAAACTTGAATTATGGGCAA+AGG | - | chr5_2:5270605-5270624 | Msa0751790:intron | 30.0% | |
| AGGAAATGAGAAAACTCAAA+AGG | - | chr5_2:5270892-5270911 | Msa0751790:intron | 30.0% | |
| AATGAGAAAACTCAAAAGGA+TGG | - | chr5_2:5270896-5270915 | Msa0751790:intron | 30.0% | |
| !! | TTTTTCTGTTGCTGTTGTTT+TGG | - | chr5_2:5270202-5270221 | Msa0751790:CDS | 30.0% |
| ! | GTCTCATTACCTTAGATTTT+TGG | - | chr5_2:5270331-5270350 | Msa0751790:CDS | 30.0% |
| ! | TGCCCATAATTCAAGTTTAA+CGG | + | chr5_2:5270604-5270623 | None:intergenic | 30.0% |
| TAAACTTGAATTATGGGCAA+AGG | - | chr5_2:5270605-5270624 | Msa0751790:intron | 30.0% | |
| AGGAAATGAGAAAACTCAAA+AGG | - | chr5_2:5270892-5270911 | Msa0751790:intron | 30.0% | |
| AATGAGAAAACTCAAAAGGA+TGG | - | chr5_2:5270896-5270915 | Msa0751790:intron | 30.0% | |
| ACAGCAACAGAAAAACAGTT+GGG | + | chr5_2:5270197-5270216 | None:intergenic | 35.0% | |
| AACAGCAACAGAAAAACAGT+TGG | + | chr5_2:5270198-5270217 | None:intergenic | 35.0% | |
| TGTTAGCAGATTTCTTAGGT+TGG | - | chr5_2:5270288-5270307 | Msa0751790:CDS | 35.0% | |
| ! | GGCTGCTTTATTGTATATGT+AGG | - | chr5_2:5270309-5270328 | Msa0751790:CDS | 35.0% |
| !!! | ATTTTTTGGATTGGAGCCTT+TGG | - | chr5_2:5270372-5270391 | Msa0751790:CDS | 35.0% |
| !!! | CTTGTGGCTTTTTTCTGTTT+CGG | - | chr5_2:5270433-5270452 | Msa0751790:CDS | 35.0% |
| !!! | GCTGCTGTGTTTGTTTTTTT+CGG | - | chr5_2:5270468-5270487 | Msa0751790:CDS | 35.0% |
| ! | AAGGGAATTTCTGGATATGA+TGG | + | chr5_2:5270579-5270598 | None:intergenic | 35.0% |
| ! | AATTCAAGTTTAACGGGGAA+GGG | + | chr5_2:5270597-5270616 | None:intergenic | 35.0% |
| ! | TAATTCAAGTTTAACGGGGA+AGG | + | chr5_2:5270598-5270617 | None:intergenic | 35.0% |
| TCCCCGTTAAACTTGAATTA+TGG | - | chr5_2:5270598-5270617 | Msa0751790:intron | 35.0% | |
| ! | CCCATAATTCAAGTTTAACG+GGG | + | chr5_2:5270602-5270621 | None:intergenic | 35.0% |
| CCCCGTTAAACTTGAATTAT+GGG | - | chr5_2:5270599-5270618 | Msa0751790:intron | 35.0% | |
| ! | GCCCATAATTCAAGTTTAAC+GGG | + | chr5_2:5270603-5270622 | None:intergenic | 35.0% |
| AATGATACAACGAATGAACC+AGG | - | chr5_2:5270788-5270807 | Msa0751790:intron | 35.0% | |
| GAATGAGTTAAAGGAATTGC+TGG | - | chr5_2:5270857-5270876 | Msa0751790:intron | 35.0% | |
| TCAAAAGGATGGCTACAAAA+AGG | - | chr5_2:5270907-5270926 | Msa0751790:intron | 35.0% | |
| ACAGCAACAGAAAAACAGTT+GGG | + | chr5_2:5270197-5270216 | None:intergenic | 35.0% | |
| AACAGCAACAGAAAAACAGT+TGG | + | chr5_2:5270198-5270217 | None:intergenic | 35.0% | |
| TGTTAGCAGATTTCTTAGGT+TGG | - | chr5_2:5270288-5270307 | Msa0751790:CDS | 35.0% | |
| ! | GGCTGCTTTATTGTATATGT+AGG | - | chr5_2:5270309-5270328 | Msa0751790:CDS | 35.0% |
| !!! | ATTTTTTGGATTGGAGCCTT+TGG | - | chr5_2:5270372-5270391 | Msa0751790:CDS | 35.0% |
| !!! | CTTGTGGCTTTTTTCTGTTT+CGG | - | chr5_2:5270433-5270452 | Msa0751790:CDS | 35.0% |
| !!! | GCTGCTGTGTTTGTTTTTTT+CGG | - | chr5_2:5270468-5270487 | Msa0751790:CDS | 35.0% |
| ! | AAGGGAATTTCTGGATATGA+TGG | + | chr5_2:5270579-5270598 | None:intergenic | 35.0% |
| ! | AATTCAAGTTTAACGGGGAA+GGG | + | chr5_2:5270597-5270616 | None:intergenic | 35.0% |
| ! | TAATTCAAGTTTAACGGGGA+AGG | + | chr5_2:5270598-5270617 | None:intergenic | 35.0% |
| TCCCCGTTAAACTTGAATTA+TGG | - | chr5_2:5270598-5270617 | Msa0751790:intron | 35.0% | |
| ! | CCCATAATTCAAGTTTAACG+GGG | + | chr5_2:5270602-5270621 | None:intergenic | 35.0% |
| CCCCGTTAAACTTGAATTAT+GGG | - | chr5_2:5270599-5270618 | Msa0751790:intron | 35.0% | |
| ! | GCCCATAATTCAAGTTTAAC+GGG | + | chr5_2:5270603-5270622 | None:intergenic | 35.0% |
| AATGATACAACGAATGAACC+AGG | - | chr5_2:5270788-5270807 | Msa0751790:intron | 35.0% | |
| GAATGAGTTAAAGGAATTGC+TGG | - | chr5_2:5270857-5270876 | Msa0751790:intron | 35.0% | |
| TCAAAAGGATGGCTACAAAA+AGG | - | chr5_2:5270907-5270926 | Msa0751790:intron | 35.0% | |
| !! | TGGTTCTGTTCTTGCGTTTT+TGG | - | chr5_2:5270117-5270136 | Msa0751790:CDS | 40.0% |
| !! | TTCTGTTCTTGCGTTTTTGG+AGG | - | chr5_2:5270120-5270139 | Msa0751790:CDS | 40.0% |
| !! | TTGCGTTTTTGGAGGTTGTT+AGG | - | chr5_2:5270128-5270147 | Msa0751790:CDS | 40.0% |
| !!! | TGCTGTTGTTTTGGATCTGT+CGG | - | chr5_2:5270211-5270230 | Msa0751790:CDS | 40.0% |
| ! | CGGTTTGATTTCAAAGGCTT+TGG | - | chr5_2:5270249-5270268 | Msa0751790:CDS | 40.0% |
| CGTGTGTTAGCAGATTTCTT+AGG | - | chr5_2:5270284-5270303 | Msa0751790:CDS | 40.0% | |
| TCTGTTACTGACAGTGGTTA+GGG | - | chr5_2:5270403-5270422 | Msa0751790:CDS | 40.0% | |
| ! | GAATGCAGCAGAGTTTTTGA+AGG | - | chr5_2:5270539-5270558 | Msa0751790:CDS | 40.0% |
| !! | CAACTCTCTAGAATGAGATG+AGG | + | chr5_2:5270751-5270770 | None:intergenic | 40.0% |
| ATCATTGCTTGCATCTCAAG+AGG | + | chr5_2:5270774-5270793 | None:intergenic | 40.0% | |
| AAGGATGGCTACAAAAAGGA+TGG | - | chr5_2:5270911-5270930 | Msa0751790:intron | 40.0% | |
| AGGATGGCTACAAAAAGGAT+GGG | - | chr5_2:5270912-5270931 | Msa0751790:intron | 40.0% | |
| ! | CATTTTCGTCGTCATGTGTT+CGG | + | chr5_2:5271010-5271029 | None:intergenic | 40.0% |
| ! | TGACGACGAAAATGATGATG+AGG | - | chr5_2:5271016-5271035 | Msa0751790:intron | 40.0% |
| !! | TGGTTCTGTTCTTGCGTTTT+TGG | - | chr5_2:5270117-5270136 | Msa0751790:CDS | 40.0% |
| !! | TTCTGTTCTTGCGTTTTTGG+AGG | - | chr5_2:5270120-5270139 | Msa0751790:CDS | 40.0% |
| !! | TTGCGTTTTTGGAGGTTGTT+AGG | - | chr5_2:5270128-5270147 | Msa0751790:CDS | 40.0% |
| !!! | TGCTGTTGTTTTGGATCTGT+CGG | - | chr5_2:5270211-5270230 | Msa0751790:CDS | 40.0% |
| ! | CGGTTTGATTTCAAAGGCTT+TGG | - | chr5_2:5270249-5270268 | Msa0751790:CDS | 40.0% |
| CGTGTGTTAGCAGATTTCTT+AGG | - | chr5_2:5270284-5270303 | Msa0751790:CDS | 40.0% | |
| TCTGTTACTGACAGTGGTTA+GGG | - | chr5_2:5270403-5270422 | Msa0751790:CDS | 40.0% | |
| ! | GAATGCAGCAGAGTTTTTGA+AGG | - | chr5_2:5270539-5270558 | Msa0751790:CDS | 40.0% |
| !! | CAACTCTCTAGAATGAGATG+AGG | + | chr5_2:5270751-5270770 | None:intergenic | 40.0% |
| ATCATTGCTTGCATCTCAAG+AGG | + | chr5_2:5270774-5270793 | None:intergenic | 40.0% | |
| AAGGATGGCTACAAAAAGGA+TGG | - | chr5_2:5270911-5270930 | Msa0751790:intron | 40.0% | |
| AGGATGGCTACAAAAAGGAT+GGG | - | chr5_2:5270912-5270931 | Msa0751790:intron | 40.0% | |
| ! | CATTTTCGTCGTCATGTGTT+CGG | + | chr5_2:5271010-5271029 | None:intergenic | 40.0% |
| ! | TGACGACGAAAATGATGATG+AGG | - | chr5_2:5271016-5271035 | Msa0751790:intron | 40.0% |
| !!! | GCTGTTGTTTTGGATCTGTC+GGG | - | chr5_2:5270212-5270231 | Msa0751790:CDS | 45.0% |
| ! | GTTCGGCGGTTTGATTTCAA+AGG | - | chr5_2:5270243-5270262 | Msa0751790:CDS | 45.0% |
| ! | AAAGGCTTTGGCTGATAGTG+AGG | - | chr5_2:5270261-5270280 | Msa0751790:CDS | 45.0% |
| GTAACAGAGCAGAATGCCAA+AGG | + | chr5_2:5270391-5270410 | None:intergenic | 45.0% | |
| TTCTGCTCTGTTACTGACAG+TGG | - | chr5_2:5270397-5270416 | Msa0751790:CDS | 45.0% | |
| CTCTGTTACTGACAGTGGTT+AGG | - | chr5_2:5270402-5270421 | Msa0751790:CDS | 45.0% | |
| !! | TGGTTAGGGAGTGTTTCTTG+TGG | - | chr5_2:5270417-5270436 | Msa0751790:CDS | 45.0% |
| TTAACGGGGAAGGGAATTTC+TGG | + | chr5_2:5270588-5270607 | None:intergenic | 45.0% | |
| CTTGAATTATGGGCAAAGGC+TGG | - | chr5_2:5270609-5270628 | Msa0751790:intron | 45.0% | |
| GGAAGACCGGGTAGAATATA+CGG | - | chr5_2:5270660-5270679 | Msa0751790:intron | 45.0% | |
| CCAAGACCGTATATTCTACC+CGG | + | chr5_2:5270669-5270688 | None:intergenic | 45.0% | |
| CGGGTAGAATATACGGTCTT+GGG | - | chr5_2:5270667-5270686 | Msa0751790:intron | 45.0% | |
| ATCTCCATGTACCACATTGC+CGG | + | chr5_2:5270700-5270719 | None:intergenic | 45.0% | |
| CTAGAATGAGATGAGGACTC+TGG | + | chr5_2:5270744-5270763 | None:intergenic | 45.0% | |
| ACAACGAATGAACCAGGAGT+TGG | - | chr5_2:5270794-5270813 | Msa0751790:intron | 45.0% | |
| !!! | CCTTTTGAGATTCCAACTCC+TGG | + | chr5_2:5270809-5270828 | None:intergenic | 45.0% |
| CCAGGAGTTGGAATCTCAAA+AGG | - | chr5_2:5270806-5270825 | Msa0751790:intron | 45.0% | |
| GGAGTTGGAATCTCAAAAGG+AGG | - | chr5_2:5270809-5270828 | Msa0751790:intron | 45.0% | |
| ! | GGAATCTCAAAAGGAGGTGT+TGG | - | chr5_2:5270815-5270834 | Msa0751790:intron | 45.0% |
| AAAGGAATTGCTGGCCAAAC+AGG | - | chr5_2:5270866-5270885 | Msa0751790:intron | 45.0% | |
| TCTCATTTCCTCTGCCTGTT+TGG | + | chr5_2:5270883-5270902 | None:intergenic | 45.0% | |
| ATGGCTACAAAAAGGATGGG+TGG | - | chr5_2:5270915-5270934 | Msa0751790:intron | 45.0% | |
| GTTCGGTCTTCTTGAACTGA+CGG | + | chr5_2:5270993-5271012 | None:intergenic | 45.0% | |
| ! | CGAAAATGATGATGAGGACG+AGG | - | chr5_2:5271022-5271041 | Msa0751790:intron | 45.0% |
| !!! | GCTGTTGTTTTGGATCTGTC+GGG | - | chr5_2:5270212-5270231 | Msa0751790:CDS | 45.0% |
| ! | GTTCGGCGGTTTGATTTCAA+AGG | - | chr5_2:5270243-5270262 | Msa0751790:CDS | 45.0% |
| ! | AAAGGCTTTGGCTGATAGTG+AGG | - | chr5_2:5270261-5270280 | Msa0751790:CDS | 45.0% |
| GTAACAGAGCAGAATGCCAA+AGG | + | chr5_2:5270391-5270410 | None:intergenic | 45.0% | |
| TTCTGCTCTGTTACTGACAG+TGG | - | chr5_2:5270397-5270416 | Msa0751790:CDS | 45.0% | |
| CTCTGTTACTGACAGTGGTT+AGG | - | chr5_2:5270402-5270421 | Msa0751790:CDS | 45.0% | |
| !! | TGGTTAGGGAGTGTTTCTTG+TGG | - | chr5_2:5270417-5270436 | Msa0751790:CDS | 45.0% |
| TTAACGGGGAAGGGAATTTC+TGG | + | chr5_2:5270588-5270607 | None:intergenic | 45.0% | |
| CTTGAATTATGGGCAAAGGC+TGG | - | chr5_2:5270609-5270628 | Msa0751790:intron | 45.0% | |
| GGAAGACCGGGTAGAATATA+CGG | - | chr5_2:5270660-5270679 | Msa0751790:intron | 45.0% | |
| CCAAGACCGTATATTCTACC+CGG | + | chr5_2:5270669-5270688 | None:intergenic | 45.0% | |
| CGGGTAGAATATACGGTCTT+GGG | - | chr5_2:5270667-5270686 | Msa0751790:intron | 45.0% | |
| ATCTCCATGTACCACATTGC+CGG | + | chr5_2:5270700-5270719 | None:intergenic | 45.0% | |
| CTAGAATGAGATGAGGACTC+TGG | + | chr5_2:5270744-5270763 | None:intergenic | 45.0% | |
| ACAACGAATGAACCAGGAGT+TGG | - | chr5_2:5270794-5270813 | Msa0751790:intron | 45.0% | |
| !!! | CCTTTTGAGATTCCAACTCC+TGG | + | chr5_2:5270809-5270828 | None:intergenic | 45.0% |
| CCAGGAGTTGGAATCTCAAA+AGG | - | chr5_2:5270806-5270825 | Msa0751790:intron | 45.0% | |
| GGAGTTGGAATCTCAAAAGG+AGG | - | chr5_2:5270809-5270828 | Msa0751790:intron | 45.0% | |
| ! | GGAATCTCAAAAGGAGGTGT+TGG | - | chr5_2:5270815-5270834 | Msa0751790:intron | 45.0% |
| AAAGGAATTGCTGGCCAAAC+AGG | - | chr5_2:5270866-5270885 | Msa0751790:intron | 45.0% | |
| TCTCATTTCCTCTGCCTGTT+TGG | + | chr5_2:5270883-5270902 | None:intergenic | 45.0% | |
| ATGGCTACAAAAAGGATGGG+TGG | - | chr5_2:5270915-5270934 | Msa0751790:intron | 45.0% | |
| GTTCGGTCTTCTTGAACTGA+CGG | + | chr5_2:5270993-5271012 | None:intergenic | 45.0% | |
| ! | CGAAAATGATGATGAGGACG+AGG | - | chr5_2:5271022-5271041 | Msa0751790:intron | 45.0% |
| TAGGTTTGCCCCAACCTGTT+AGG | - | chr5_2:5270147-5270166 | Msa0751790:CDS | 50.0% | |
| !!! | GTTGTTTTGGATCTGTCGGG+TGG | - | chr5_2:5270215-5270234 | Msa0751790:CDS | 50.0% |
| TCTGTCGGGTGGTGTTTGTT+CGG | - | chr5_2:5270226-5270245 | Msa0751790:CDS | 50.0% | |
| TGGGCAAAGGCTGGAGAAAA+AGG | - | chr5_2:5270618-5270637 | Msa0751790:intron | 50.0% | |
| GGCTGGAGAAAAAGGAAGAC+CGG | - | chr5_2:5270626-5270645 | Msa0751790:intron | 50.0% | |
| GGAGAAAAAGGAAGACCGGA+TGG | - | chr5_2:5270630-5270649 | Msa0751790:intron | 50.0% | |
| GAAAAAGGAAGACCGGATGG+AGG | - | chr5_2:5270633-5270652 | Msa0751790:intron | 50.0% | |
| ! | GGTCTTCCTTTTCCTCCATC+CGG | + | chr5_2:5270648-5270667 | None:intergenic | 50.0% |
| GGATGGAGGAAAAGGAAGAC+CGG | - | chr5_2:5270647-5270666 | Msa0751790:intron | 50.0% | |
| GATGGAGGAAAAGGAAGACC+GGG | - | chr5_2:5270648-5270667 | Msa0751790:intron | 50.0% | |
| CCGGGTAGAATATACGGTCT+TGG | - | chr5_2:5270666-5270685 | Msa0751790:intron | 50.0% | |
| ! | TGTACCACATTGCCGGCTAA+TGG | + | chr5_2:5270693-5270712 | None:intergenic | 50.0% |
| TTAGCCGGCAATGTGGTACA+TGG | - | chr5_2:5270693-5270712 | Msa0751790:intron | 50.0% | |
| GAATGAGATGAGGACTCTGG+TGG | + | chr5_2:5270741-5270760 | None:intergenic | 50.0% | |
| !! | GACGGTGATGATTGACTCGA+TGG | + | chr5_2:5270975-5270994 | None:intergenic | 50.0% |
| ! | ATGATGATGAGGACGAGGAG+AGG | - | chr5_2:5271027-5271046 | Msa0751790:intron | 50.0% |
| ! | TGATGATGAGGACGAGGAGA+GGG | - | chr5_2:5271028-5271047 | Msa0751790:intron | 50.0% |
| TAGGTTTGCCCCAACCTGTT+AGG | - | chr5_2:5270147-5270166 | Msa0751790:CDS | 50.0% | |
| !!! | GTTGTTTTGGATCTGTCGGG+TGG | - | chr5_2:5270215-5270234 | Msa0751790:CDS | 50.0% |
| TCTGTCGGGTGGTGTTTGTT+CGG | - | chr5_2:5270226-5270245 | Msa0751790:CDS | 50.0% | |
| TGGGCAAAGGCTGGAGAAAA+AGG | - | chr5_2:5270618-5270637 | Msa0751790:intron | 50.0% | |
| GGCTGGAGAAAAAGGAAGAC+CGG | - | chr5_2:5270626-5270645 | Msa0751790:intron | 50.0% | |
| GGAGAAAAAGGAAGACCGGA+TGG | - | chr5_2:5270630-5270649 | Msa0751790:intron | 50.0% | |
| GAAAAAGGAAGACCGGATGG+AGG | - | chr5_2:5270633-5270652 | Msa0751790:intron | 50.0% | |
| ! | GGTCTTCCTTTTCCTCCATC+CGG | + | chr5_2:5270648-5270667 | None:intergenic | 50.0% |
| GGATGGAGGAAAAGGAAGAC+CGG | - | chr5_2:5270647-5270666 | Msa0751790:intron | 50.0% | |
| GATGGAGGAAAAGGAAGACC+GGG | - | chr5_2:5270648-5270667 | Msa0751790:intron | 50.0% | |
| CCGGGTAGAATATACGGTCT+TGG | - | chr5_2:5270666-5270685 | Msa0751790:intron | 50.0% | |
| ! | TGTACCACATTGCCGGCTAA+TGG | + | chr5_2:5270693-5270712 | None:intergenic | 50.0% |
| TTAGCCGGCAATGTGGTACA+TGG | - | chr5_2:5270693-5270712 | Msa0751790:intron | 50.0% | |
| GAATGAGATGAGGACTCTGG+TGG | + | chr5_2:5270741-5270760 | None:intergenic | 50.0% | |
| !! | GACGGTGATGATTGACTCGA+TGG | + | chr5_2:5270975-5270994 | None:intergenic | 50.0% |
| ! | ATGATGATGAGGACGAGGAG+AGG | - | chr5_2:5271027-5271046 | Msa0751790:intron | 50.0% |
| ! | TGATGATGAGGACGAGGAGA+GGG | - | chr5_2:5271028-5271047 | Msa0751790:intron | 50.0% |
| ACCCTGTGCCTAACAGGTTG+GGG | + | chr5_2:5270158-5270177 | None:intergenic | 55.0% | |
| CACCCTGTGCCTAACAGGTT+GGG | + | chr5_2:5270159-5270178 | None:intergenic | 55.0% | |
| !! | TGTTAGGCACAGGGTGCTGT+GGG | - | chr5_2:5270163-5270182 | Msa0751790:CDS | 55.0% |
| GGAAGACCGGATGGAGGAAA+AGG | - | chr5_2:5270639-5270658 | Msa0751790:intron | 55.0% | |
| TACGGTCTTGGGCCATTAGC+CGG | - | chr5_2:5270678-5270697 | Msa0751790:intron | 55.0% | |
| TGAGATGAGGACTCTGGTGG+AGG | + | chr5_2:5270738-5270757 | None:intergenic | 55.0% | |
| ATTGCTGGCCAAACAGGCAG+AGG | - | chr5_2:5270872-5270891 | Msa0751790:intron | 55.0% | |
| GGATGGGTGGCATGAAGAGT+AGG | - | chr5_2:5270928-5270947 | Msa0751790:intron | 55.0% | |
| ACCCTGTGCCTAACAGGTTG+GGG | + | chr5_2:5270158-5270177 | None:intergenic | 55.0% | |
| CACCCTGTGCCTAACAGGTT+GGG | + | chr5_2:5270159-5270178 | None:intergenic | 55.0% | |
| !! | TGTTAGGCACAGGGTGCTGT+GGG | - | chr5_2:5270163-5270182 | Msa0751790:CDS | 55.0% |
| GGAAGACCGGATGGAGGAAA+AGG | - | chr5_2:5270639-5270658 | Msa0751790:intron | 55.0% | |
| TACGGTCTTGGGCCATTAGC+CGG | - | chr5_2:5270678-5270697 | Msa0751790:intron | 55.0% | |
| TGAGATGAGGACTCTGGTGG+AGG | + | chr5_2:5270738-5270757 | None:intergenic | 55.0% | |
| ATTGCTGGCCAAACAGGCAG+AGG | - | chr5_2:5270872-5270891 | Msa0751790:intron | 55.0% | |
| GGATGGGTGGCATGAAGAGT+AGG | - | chr5_2:5270928-5270947 | Msa0751790:intron | 55.0% | |
| TGCCCCAACCTGTTAGGCAC+AGG | - | chr5_2:5270153-5270172 | Msa0751790:CDS | 60.0% | |
| GCCCCAACCTGTTAGGCACA+GGG | - | chr5_2:5270154-5270173 | Msa0751790:CDS | 60.0% | |
| GCACCCTGTGCCTAACAGGT+TGG | + | chr5_2:5270160-5270179 | None:intergenic | 60.0% | |
| CACAGCACCCTGTGCCTAAC+AGG | + | chr5_2:5270164-5270183 | None:intergenic | 60.0% | |
| !! | CTGTTAGGCACAGGGTGCTG+TGG | - | chr5_2:5270162-5270181 | Msa0751790:CDS | 60.0% |
| GTCGGGTGGTGTTTGTTCGG+CGG | - | chr5_2:5270229-5270248 | Msa0751790:CDS | 60.0% | |
| TGGGCCATTAGCCGGCAATG+TGG | - | chr5_2:5270686-5270705 | Msa0751790:intron | 60.0% | |
| GATGAGGACTCTGGTGGAGG+AGG | + | chr5_2:5270735-5270754 | None:intergenic | 60.0% | |
| TGCCCCAACCTGTTAGGCAC+AGG | - | chr5_2:5270153-5270172 | Msa0751790:CDS | 60.0% | |
| GCCCCAACCTGTTAGGCACA+GGG | - | chr5_2:5270154-5270173 | Msa0751790:CDS | 60.0% | |
| GCACCCTGTGCCTAACAGGT+TGG | + | chr5_2:5270160-5270179 | None:intergenic | 60.0% | |
| CACAGCACCCTGTGCCTAAC+AGG | + | chr5_2:5270164-5270183 | None:intergenic | 60.0% | |
| !! | CTGTTAGGCACAGGGTGCTG+TGG | - | chr5_2:5270162-5270181 | Msa0751790:CDS | 60.0% |
| GTCGGGTGGTGTTTGTTCGG+CGG | - | chr5_2:5270229-5270248 | Msa0751790:CDS | 60.0% | |
| TGGGCCATTAGCCGGCAATG+TGG | - | chr5_2:5270686-5270705 | Msa0751790:intron | 60.0% | |
| GATGAGGACTCTGGTGGAGG+AGG | + | chr5_2:5270735-5270754 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 5270016 | 5271070 | 5270016 | ID=Msa0751790;Name=Msa0751790 |
| chr5_2 | mRNA | 5270016 | 5271070 | 5270016 | ID=Msa0751790-mRNA-1;Parent=Msa0751790;Name=Msa0751790-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|0.5|1|1|2|0|183 |
| chr5_2 | exon | 5271065 | 5271070 | 5271065 | ID=Msa0751790-mRNA-1:exon:2126;Parent=Msa0751790-mRNA-1 |
| chr5_2 | exon | 5270016 | 5270561 | 5270016 | ID=Msa0751790-mRNA-1:exon:2125;Parent=Msa0751790-mRNA-1 |
| chr5_2 | CDS | 5271065 | 5271070 | 5271065 | ID=Msa0751790-mRNA-1:cds;Parent=Msa0751790-mRNA-1 |
| chr5_2 | CDS | 5270016 | 5270561 | 5270016 | ID=Msa0751790-mRNA-1:cds;Parent=Msa0751790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
