Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831970 | XP_039683016.1 | 89.103 | 156 | 17 | 0 | 3 | 158 | 156 | 311 | 1.06e-76 | 242 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831970 | A0A072VCJ9 | 87.742 | 155 | 19 | 0 | 3 | 157 | 69 | 223 | 3.92e-70 | 222 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0627410 | Msa0831970 | 0.803307 | 3.711496e-49 | -8.615850e-47 |
| Msa0711340 | Msa0831970 | 0.905146 | 5.840907e-80 | -8.615850e-47 |
| Msa0751790 | Msa0831970 | 0.819831 | 9.446469e-53 | -8.615850e-47 |
| Msa0751800 | Msa0831970 | 0.826561 | 2.536062e-54 | -8.615850e-47 |
| Msa0794260 | Msa0831970 | 0.927270 | 1.483864e-91 | -8.615850e-47 |
| Msa0831970 | Msa0887990 | 0.825695 | 4.074320e-54 | -8.615850e-47 |
| Msa0831970 | Msa1438250 | 0.804494 | 2.102599e-49 | -8.615850e-47 |
| Msa0456200 | Msa0831970 | 0.801153 | 1.029994e-48 | -8.615850e-47 |
| Msa0326200 | Msa0831970 | 0.806325 | 8.688924e-50 | -8.615850e-47 |
| Msa0353190 | Msa0831970 | 0.806921 | 6.503678e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831970 | MtrunA17_Chr4g0029871 | 88.889 | 135 | 15 | 0 | 3 | 137 | 14 | 148 | 4.37e-73 | 218 |
| Msa0831970 | MtrunA17_Chr1g0176161 | 88.387 | 155 | 18 | 0 | 3 | 157 | 355 | 509 | 1.17e-71 | 225 |
| Msa0831970 | MtrunA17_Chr7g0219321 | 86.585 | 82 | 11 | 0 | 3 | 84 | 36 | 117 | 2.26e-37 | 125 |
| Msa0831970 | MtrunA17_Chr4g0025081 | 83.871 | 62 | 10 | 0 | 3 | 64 | 428 | 489 | 1.24e-31 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACCGTTAAACTTGAATTA+TGG | 0.151508 | 5_4:-5086021 | Msa0831970:CDS |
| TTAACGGTGAAGGGAATTTC+TGG | 0.208110 | 5_4:+5086034 | None:intergenic |
| CACCGTTAAACTTGAATTAT+GGG | 0.280520 | 5_4:-5086020 | Msa0831970:CDS |
| TCTCATTTCCTCTGCCTGTT+TGG | 0.282668 | 5_4:+5085739 | None:intergenic |
| TGGGCAAAGGCTGGAGAAAA+AGG | 0.320847 | 5_4:-5086001 | Msa0831970:CDS |
| TGCCCATAATTCAAGTTTAA+CGG | 0.338157 | 5_4:+5086018 | None:intergenic |
| AAGAATTGAAGAATGAGTTA+AGG | 0.346930 | 5_4:-5085772 | Msa0831970:CDS |
| TCAAAAGGATGGCTACAAAA+AGG | 0.356867 | 5_4:-5085712 | Msa0831970:CDS |
| TGTACCACATTGCCGGCTAA+TGG | 0.387321 | 5_4:+5085929 | None:intergenic |
| AGAATTGAAGAATGAGTTAA+GGG | 0.389857 | 5_4:-5085771 | Msa0831970:CDS |
| CCGGGTATAATATATGGTCT+TGG | 0.395016 | 5_4:-5085953 | Msa0831970:CDS |
| AAGGGAATTGCTGGCCAAAC+AGG | 0.407225 | 5_4:-5085753 | Msa0831970:CDS |
| ATCTCCATGTACCACATTGC+CGG | 0.408976 | 5_4:+5085922 | None:intergenic |
| GAATGAGTTAAGGGAATTGC+TGG | 0.411267 | 5_4:-5085762 | Msa0831970:CDS |
| GGAAGACCGGGTATAATATA+TGG | 0.414732 | 5_4:-5085959 | Msa0831970:CDS |
| CATTGTCGTCGTCATGTGTT+CGG | 0.438800 | 5_4:+5085612 | None:intergenic |
| GGAAGACCGGATGGAGGAAA+AGG | 0.440236 | 5_4:-5085980 | Msa0831970:CDS |
| CGGGTATAATATATGGTCTT+GGG | 0.465993 | 5_4:-5085952 | Msa0831970:CDS |
| CCAGGAGTTGCAATCTCAAA+AGG | 0.474103 | 5_4:-5085813 | Msa0831970:CDS |
| AAGGGAATTTCTGGATATGA+TGG | 0.488396 | 5_4:+5086043 | None:intergenic |
| TATGGTCTTGGGCCATTAGC+CGG | 0.490564 | 5_4:-5085941 | Msa0831970:CDS |
| CTTGAATTATGGGCAAAGGC+TGG | 0.496169 | 5_4:-5086010 | Msa0831970:CDS |
| AGGAAATGAGAAAATTCAAA+AGG | 0.504200 | 5_4:-5085727 | Msa0831970:CDS |
| TAATTCAAGTTTAACGGTGA+AGG | 0.507247 | 5_4:+5086024 | None:intergenic |
| GGATGGGTGGCATGAAGAGT+AGG | 0.508484 | 5_4:-5085691 | Msa0831970:CDS |
| AATTCAAGTTTAACGGTGAA+GGG | 0.517772 | 5_4:+5086025 | None:intergenic |
| GCAATCTCAAAAGGAGGCGT+TGG | 0.538828 | 5_4:-5085804 | Msa0831970:CDS |
| AATGAGAAAATTCAAAAGGA+TGG | 0.547153 | 5_4:-5085723 | Msa0831970:CDS |
| CGAGATGAGGACTCTGGTGG+AGG | 0.547377 | 5_4:+5085884 | None:intergenic |
| TAAACTTGAATTATGGGCAA+AGG | 0.553794 | 5_4:-5086014 | Msa0831970:CDS |
| GATGAGGACTCTGGTGGAGG+AGG | 0.555009 | 5_4:+5085887 | None:intergenic |
| TTAGCCGGCAATGTGGTACA+TGG | 0.555469 | 5_4:-5085926 | Msa0831970:CDS |
| GGATGGAGGAAAAGGAAGAC+CGG | 0.558193 | 5_4:-5085972 | Msa0831970:CDS |
| TGATGATGAGGACGAGGAGA+GGG | 0.560715 | 5_4:-5085591 | Msa0831970:CDS |
| GACGGTGATGATTGACTCGA+TGG | 0.561145 | 5_4:+5085647 | None:intergenic |
| ATTGCTGGCCAAACAGGCAG+AGG | 0.565425 | 5_4:-5085747 | Msa0831970:CDS |
| CTAGAACGAGATGAGGACTC+TGG | 0.570702 | 5_4:+5085878 | None:intergenic |
| ATCATTGCTTGCATCTCAAG+AGG | 0.574336 | 5_4:+5085848 | None:intergenic |
| CGACAATGATGATGAGGACG+AGG | 0.579199 | 5_4:-5085597 | Msa0831970:CDS |
| GTTCGGTCTTCTTGAATCGA+CGG | 0.592079 | 5_4:+5085629 | None:intergenic |
| ATGATGATGAGGACGAGGAG+AGG | 0.604569 | 5_4:-5085592 | Msa0831970:CDS |
| CAACTCTCTAGAACGAGATG+AGG | 0.605884 | 5_4:+5085871 | None:intergenic |
| CCAAGACCATATATTATACC+CGG | 0.611702 | 5_4:+5085953 | None:intergenic |
| GAACGAGATGAGGACTCTGG+TGG | 0.623152 | 5_4:+5085881 | None:intergenic |
| GATGGAGGAAAAGGAAGACC+GGG | 0.640530 | 5_4:-5085971 | Msa0831970:CDS |
| TGACGACGACAATGATGATG+AGG | 0.642696 | 5_4:-5085603 | Msa0831970:CDS |
| AATGATACAACGAATGAACC+AGG | 0.652325 | 5_4:-5085831 | Msa0831970:CDS |
| GGAGTTGCAATCTCAAAAGG+AGG | 0.669723 | 5_4:-5085810 | Msa0831970:CDS |
| TGGGCCATTAGCCGGCAATG+TGG | 0.702771 | 5_4:-5085933 | Msa0831970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATTACTTTTCTTTAT+AGG | - | chr5_4:5085992-5086011 | Msa0831970:CDS | 10.0% |
| !!! | TATTTATTACTTTTCTTTAT+AGG | - | chr5_4:5085992-5086011 | Msa0831970:CDS | 10.0% |
| !!! | ATATCATATTTTAGAAATAC+TGG | - | chr5_4:5085652-5085671 | Msa0831970:CDS | 15.0% |
| !!! | ATATCATATTTTAGAAATAC+TGG | - | chr5_4:5085652-5085671 | Msa0831970:CDS | 15.0% |
| ! | AAGAATTGAAGAATGAGTTA+AGG | - | chr5_4:5086336-5086355 | Msa0831970:intron | 25.0% |
| ! | AGAATTGAAGAATGAGTTAA+GGG | - | chr5_4:5086337-5086356 | Msa0831970:intron | 25.0% |
| ! | AGGAAATGAGAAAATTCAAA+AGG | - | chr5_4:5086381-5086400 | Msa0831970:intron | 25.0% |
| ! | AATGAGAAAATTCAAAAGGA+TGG | - | chr5_4:5086385-5086404 | Msa0831970:intron | 25.0% |
| ! | AAGAATTGAAGAATGAGTTA+AGG | - | chr5_4:5086336-5086355 | Msa0831970:intron | 25.0% |
| ! | AGAATTGAAGAATGAGTTAA+GGG | - | chr5_4:5086337-5086356 | Msa0831970:intron | 25.0% |
| ! | AGGAAATGAGAAAATTCAAA+AGG | - | chr5_4:5086381-5086400 | Msa0831970:intron | 25.0% |
| ! | AATGAGAAAATTCAAAAGGA+TGG | - | chr5_4:5086385-5086404 | Msa0831970:intron | 25.0% |
| ! | TTCTGTTATGTTCTTTTTGC+TGG | - | chr5_4:5085627-5085646 | Msa0831970:CDS | 30.0% |
| !! | TTTTTCTGTTGCTGTTGTTT+TGG | - | chr5_4:5085757-5085776 | Msa0831970:CDS | 30.0% |
| !!! | TTTCTTAGGTTGGCTTTTTT+TGG | - | chr5_4:5085853-5085872 | Msa0831970:CDS | 30.0% |
| !!! | TTTGTGGCTTTTTTCTGTTT+CGG | - | chr5_4:5085917-5085936 | Msa0831970:CDS | 30.0% |
| ! | AATTCAAGTTTAACGGTGAA+GGG | + | chr5_4:5086086-5086105 | None:intergenic | 30.0% |
| ! | TAATTCAAGTTTAACGGTGA+AGG | + | chr5_4:5086087-5086106 | None:intergenic | 30.0% |
| TCACCGTTAAACTTGAATTA+TGG | - | chr5_4:5086087-5086106 | Msa0831970:intron | 30.0% | |
| CACCGTTAAACTTGAATTAT+GGG | - | chr5_4:5086088-5086107 | Msa0831970:intron | 30.0% | |
| ! | TGCCCATAATTCAAGTTTAA+CGG | + | chr5_4:5086093-5086112 | None:intergenic | 30.0% |
| TAAACTTGAATTATGGGCAA+AGG | - | chr5_4:5086094-5086113 | Msa0831970:intron | 30.0% | |
| ! | TTCTGTTATGTTCTTTTTGC+TGG | - | chr5_4:5085627-5085646 | Msa0831970:CDS | 30.0% |
| !! | TTTTTCTGTTGCTGTTGTTT+TGG | - | chr5_4:5085757-5085776 | Msa0831970:CDS | 30.0% |
| !!! | TTTCTTAGGTTGGCTTTTTT+TGG | - | chr5_4:5085853-5085872 | Msa0831970:CDS | 30.0% |
| !!! | TTTGTGGCTTTTTTCTGTTT+CGG | - | chr5_4:5085917-5085936 | Msa0831970:CDS | 30.0% |
| ! | AATTCAAGTTTAACGGTGAA+GGG | + | chr5_4:5086086-5086105 | None:intergenic | 30.0% |
| ! | TAATTCAAGTTTAACGGTGA+AGG | + | chr5_4:5086087-5086106 | None:intergenic | 30.0% |
| TCACCGTTAAACTTGAATTA+TGG | - | chr5_4:5086087-5086106 | Msa0831970:intron | 30.0% | |
| CACCGTTAAACTTGAATTAT+GGG | - | chr5_4:5086088-5086107 | Msa0831970:intron | 30.0% | |
| ! | TGCCCATAATTCAAGTTTAA+CGG | + | chr5_4:5086093-5086112 | None:intergenic | 30.0% |
| TAAACTTGAATTATGGGCAA+AGG | - | chr5_4:5086094-5086113 | Msa0831970:intron | 30.0% | |
| ACAGCAACAGAAAAACAGTT+GGG | + | chr5_4:5085752-5085771 | None:intergenic | 35.0% | |
| AACAGCAACAGAAAAACAGT+TGG | + | chr5_4:5085753-5085772 | None:intergenic | 35.0% | |
| TGTTAGCAGATTTCTTAGGT+TGG | - | chr5_4:5085843-5085862 | Msa0831970:CDS | 35.0% | |
| GCTTAATATGTCAATGACAG+TGG | - | chr5_4:5085879-5085898 | Msa0831970:CDS | 35.0% | |
| ATATGTCAATGACAGTGGTT+AGG | - | chr5_4:5085884-5085903 | Msa0831970:CDS | 35.0% | |
| TATGTCAATGACAGTGGTTA+GGG | - | chr5_4:5085885-5085904 | Msa0831970:CDS | 35.0% | |
| !!! | TGCTGCGTGTTTGTTTTTTT+CGG | - | chr5_4:5085957-5085976 | Msa0831970:CDS | 35.0% |
| ! | AAGGGAATTTCTGGATATGA+TGG | + | chr5_4:5086068-5086087 | None:intergenic | 35.0% |
| CCAAGACCATATATTATACC+CGG | + | chr5_4:5086158-5086177 | None:intergenic | 35.0% | |
| CGGGTATAATATATGGTCTT+GGG | - | chr5_4:5086156-5086175 | Msa0831970:intron | 35.0% | |
| AATGATACAACGAATGAACC+AGG | - | chr5_4:5086277-5086296 | Msa0831970:intron | 35.0% | |
| TCAAAAGGATGGCTACAAAA+AGG | - | chr5_4:5086396-5086415 | Msa0831970:intron | 35.0% | |
| ACAGCAACAGAAAAACAGTT+GGG | + | chr5_4:5085752-5085771 | None:intergenic | 35.0% | |
| AACAGCAACAGAAAAACAGT+TGG | + | chr5_4:5085753-5085772 | None:intergenic | 35.0% | |
| TGTTAGCAGATTTCTTAGGT+TGG | - | chr5_4:5085843-5085862 | Msa0831970:CDS | 35.0% | |
| GCTTAATATGTCAATGACAG+TGG | - | chr5_4:5085879-5085898 | Msa0831970:CDS | 35.0% | |
| ATATGTCAATGACAGTGGTT+AGG | - | chr5_4:5085884-5085903 | Msa0831970:CDS | 35.0% | |
| TATGTCAATGACAGTGGTTA+GGG | - | chr5_4:5085885-5085904 | Msa0831970:CDS | 35.0% | |
| !!! | TGCTGCGTGTTTGTTTTTTT+CGG | - | chr5_4:5085957-5085976 | Msa0831970:CDS | 35.0% |
| ! | AAGGGAATTTCTGGATATGA+TGG | + | chr5_4:5086068-5086087 | None:intergenic | 35.0% |
| CCAAGACCATATATTATACC+CGG | + | chr5_4:5086158-5086177 | None:intergenic | 35.0% | |
| CGGGTATAATATATGGTCTT+GGG | - | chr5_4:5086156-5086175 | Msa0831970:intron | 35.0% | |
| AATGATACAACGAATGAACC+AGG | - | chr5_4:5086277-5086296 | Msa0831970:intron | 35.0% | |
| TCAAAAGGATGGCTACAAAA+AGG | - | chr5_4:5086396-5086415 | Msa0831970:intron | 35.0% | |
| !! | TCGCGTTTTTGGAGGTTTTT+AGG | - | chr5_4:5085683-5085702 | Msa0831970:CDS | 40.0% |
| !!! | TGCTGTTGTTTTGGATCTGT+CGG | - | chr5_4:5085766-5085785 | Msa0831970:CDS | 40.0% |
| ! | GTTTGGCGGTTTGATTTCAA+AGG | - | chr5_4:5085798-5085817 | Msa0831970:CDS | 40.0% |
| ! | CGGTTTGATTTCAAAGGCTT+TGG | - | chr5_4:5085804-5085823 | Msa0831970:CDS | 40.0% |
| CGTGTGTTAGCAGATTTCTT+AGG | - | chr5_4:5085839-5085858 | Msa0831970:CDS | 40.0% | |
| !!! | GTTAGGGAGTGTTTCTTTTG+TGG | - | chr5_4:5085901-5085920 | Msa0831970:CDS | 40.0% |
| TTAACGGTGAAGGGAATTTC+TGG | + | chr5_4:5086077-5086096 | None:intergenic | 40.0% | |
| GGAAGACCGGGTATAATATA+TGG | - | chr5_4:5086149-5086168 | Msa0831970:intron | 40.0% | |
| CCGGGTATAATATATGGTCT+TGG | - | chr5_4:5086155-5086174 | Msa0831970:intron | 40.0% | |
| ATCATTGCTTGCATCTCAAG+AGG | + | chr5_4:5086263-5086282 | None:intergenic | 40.0% | |
| GAATGAGTTAAGGGAATTGC+TGG | - | chr5_4:5086346-5086365 | Msa0831970:intron | 40.0% | |
| AAGGATGGCTACAAAAAGGA+TGG | - | chr5_4:5086400-5086419 | Msa0831970:intron | 40.0% | |
| AGGATGGCTACAAAAAGGAT+GGG | - | chr5_4:5086401-5086420 | Msa0831970:intron | 40.0% | |
| !! | TCGCGTTTTTGGAGGTTTTT+AGG | - | chr5_4:5085683-5085702 | Msa0831970:CDS | 40.0% |
| !!! | TGCTGTTGTTTTGGATCTGT+CGG | - | chr5_4:5085766-5085785 | Msa0831970:CDS | 40.0% |
| ! | GTTTGGCGGTTTGATTTCAA+AGG | - | chr5_4:5085798-5085817 | Msa0831970:CDS | 40.0% |
| ! | CGGTTTGATTTCAAAGGCTT+TGG | - | chr5_4:5085804-5085823 | Msa0831970:CDS | 40.0% |
| CGTGTGTTAGCAGATTTCTT+AGG | - | chr5_4:5085839-5085858 | Msa0831970:CDS | 40.0% | |
| !!! | GTTAGGGAGTGTTTCTTTTG+TGG | - | chr5_4:5085901-5085920 | Msa0831970:CDS | 40.0% |
| TTAACGGTGAAGGGAATTTC+TGG | + | chr5_4:5086077-5086096 | None:intergenic | 40.0% | |
| GGAAGACCGGGTATAATATA+TGG | - | chr5_4:5086149-5086168 | Msa0831970:intron | 40.0% | |
| CCGGGTATAATATATGGTCT+TGG | - | chr5_4:5086155-5086174 | Msa0831970:intron | 40.0% | |
| ATCATTGCTTGCATCTCAAG+AGG | + | chr5_4:5086263-5086282 | None:intergenic | 40.0% | |
| GAATGAGTTAAGGGAATTGC+TGG | - | chr5_4:5086346-5086365 | Msa0831970:intron | 40.0% | |
| AAGGATGGCTACAAAAAGGA+TGG | - | chr5_4:5086400-5086419 | Msa0831970:intron | 40.0% | |
| AGGATGGCTACAAAAAGGAT+GGG | - | chr5_4:5086401-5086420 | Msa0831970:intron | 40.0% | |
| !! | TGGTTCTGTTCTCGCGTTTT+TGG | - | chr5_4:5085672-5085691 | Msa0831970:CDS | 45.0% |
| !! | TTCTGTTCTCGCGTTTTTGG+AGG | - | chr5_4:5085675-5085694 | Msa0831970:CDS | 45.0% |
| !!! | GCTGTTGTTTTGGATCTGTC+GGG | - | chr5_4:5085767-5085786 | Msa0831970:CDS | 45.0% |
| ! | AAAGGCTTTGGCTGATAGTG+AGG | - | chr5_4:5085816-5085835 | Msa0831970:CDS | 45.0% |
| ! | CACGAATGCAGCGTAGTTTT+TGG | - | chr5_4:5086025-5086044 | Msa0831970:CDS | 45.0% |
| !! | GAATGCAGCGTAGTTTTTGG+AGG | - | chr5_4:5086028-5086047 | Msa0831970:CDS | 45.0% |
| CTTGAATTATGGGCAAAGGC+TGG | - | chr5_4:5086098-5086117 | Msa0831970:intron | 45.0% | |
| ATCTCCATGTACCACATTGC+CGG | + | chr5_4:5086189-5086208 | None:intergenic | 45.0% | |
| !! | CAACTCTCTAGAACGAGATG+AGG | + | chr5_4:5086240-5086259 | None:intergenic | 45.0% |
| !!! | CCTTTTGAGATTGCAACTCC+TGG | + | chr5_4:5086298-5086317 | None:intergenic | 45.0% |
| CCAGGAGTTGCAATCTCAAA+AGG | - | chr5_4:5086295-5086314 | Msa0831970:intron | 45.0% | |
| GGAGTTGCAATCTCAAAAGG+AGG | - | chr5_4:5086298-5086317 | Msa0831970:intron | 45.0% | |
| TCTCATTTCCTCTGCCTGTT+TGG | + | chr5_4:5086372-5086391 | None:intergenic | 45.0% | |
| ATGGCTACAAAAAGGATGGG+TGG | - | chr5_4:5086404-5086423 | Msa0831970:intron | 45.0% | |
| GTTCGGTCTTCTTGAATCGA+CGG | + | chr5_4:5086482-5086501 | None:intergenic | 45.0% | |
| CATTGTCGTCGTCATGTGTT+CGG | + | chr5_4:5086499-5086518 | None:intergenic | 45.0% | |
| ! | TGACGACGACAATGATGATG+AGG | - | chr5_4:5086505-5086524 | Msa0831970:intron | 45.0% |
| !! | TGGTTCTGTTCTCGCGTTTT+TGG | - | chr5_4:5085672-5085691 | Msa0831970:CDS | 45.0% |
| !! | TTCTGTTCTCGCGTTTTTGG+AGG | - | chr5_4:5085675-5085694 | Msa0831970:CDS | 45.0% |
| !!! | GCTGTTGTTTTGGATCTGTC+GGG | - | chr5_4:5085767-5085786 | Msa0831970:CDS | 45.0% |
| ! | AAAGGCTTTGGCTGATAGTG+AGG | - | chr5_4:5085816-5085835 | Msa0831970:CDS | 45.0% |
| ! | CACGAATGCAGCGTAGTTTT+TGG | - | chr5_4:5086025-5086044 | Msa0831970:CDS | 45.0% |
| !! | GAATGCAGCGTAGTTTTTGG+AGG | - | chr5_4:5086028-5086047 | Msa0831970:CDS | 45.0% |
| CTTGAATTATGGGCAAAGGC+TGG | - | chr5_4:5086098-5086117 | Msa0831970:intron | 45.0% | |
| ATCTCCATGTACCACATTGC+CGG | + | chr5_4:5086189-5086208 | None:intergenic | 45.0% | |
| !! | CAACTCTCTAGAACGAGATG+AGG | + | chr5_4:5086240-5086259 | None:intergenic | 45.0% |
| !!! | CCTTTTGAGATTGCAACTCC+TGG | + | chr5_4:5086298-5086317 | None:intergenic | 45.0% |
| CCAGGAGTTGCAATCTCAAA+AGG | - | chr5_4:5086295-5086314 | Msa0831970:intron | 45.0% | |
| GGAGTTGCAATCTCAAAAGG+AGG | - | chr5_4:5086298-5086317 | Msa0831970:intron | 45.0% | |
| TCTCATTTCCTCTGCCTGTT+TGG | + | chr5_4:5086372-5086391 | None:intergenic | 45.0% | |
| ATGGCTACAAAAAGGATGGG+TGG | - | chr5_4:5086404-5086423 | Msa0831970:intron | 45.0% | |
| GTTCGGTCTTCTTGAATCGA+CGG | + | chr5_4:5086482-5086501 | None:intergenic | 45.0% | |
| CATTGTCGTCGTCATGTGTT+CGG | + | chr5_4:5086499-5086518 | None:intergenic | 45.0% | |
| ! | TGACGACGACAATGATGATG+AGG | - | chr5_4:5086505-5086524 | Msa0831970:intron | 45.0% |
| TAGGTTTGCCCCAACCTGTT+AGG | - | chr5_4:5085702-5085721 | Msa0831970:CDS | 50.0% | |
| !! | TGTTAGGCACAGGGTGTTGT+GGG | - | chr5_4:5085718-5085737 | Msa0831970:CDS | 50.0% |
| !!! | GTTGTTTTGGATCTGTCGGG+TGG | - | chr5_4:5085770-5085789 | Msa0831970:CDS | 50.0% |
| TCTGTCGGGTGGTGTTTGTT+TGG | - | chr5_4:5085781-5085800 | Msa0831970:CDS | 50.0% | |
| TGGGCAAAGGCTGGAGAAAA+AGG | - | chr5_4:5086107-5086126 | Msa0831970:intron | 50.0% | |
| GGCTGGAGAAAAAGGAAGAC+CGG | - | chr5_4:5086115-5086134 | Msa0831970:intron | 50.0% | |
| GGAGAAAAAGGAAGACCGGA+TGG | - | chr5_4:5086119-5086138 | Msa0831970:intron | 50.0% | |
| GAAAAAGGAAGACCGGATGG+AGG | - | chr5_4:5086122-5086141 | Msa0831970:intron | 50.0% | |
| ! | GGTCTTCCTTTTCCTCCATC+CGG | + | chr5_4:5086137-5086156 | None:intergenic | 50.0% |
| GGATGGAGGAAAAGGAAGAC+CGG | - | chr5_4:5086136-5086155 | Msa0831970:intron | 50.0% | |
| GATGGAGGAAAAGGAAGACC+GGG | - | chr5_4:5086137-5086156 | Msa0831970:intron | 50.0% | |
| ! | TATGGTCTTGGGCCATTAGC+CGG | - | chr5_4:5086167-5086186 | Msa0831970:intron | 50.0% |
| ! | TGTACCACATTGCCGGCTAA+TGG | + | chr5_4:5086182-5086201 | None:intergenic | 50.0% |
| TTAGCCGGCAATGTGGTACA+TGG | - | chr5_4:5086182-5086201 | Msa0831970:intron | 50.0% | |
| CTAGAACGAGATGAGGACTC+TGG | + | chr5_4:5086233-5086252 | None:intergenic | 50.0% | |
| ! | GCAATCTCAAAAGGAGGCGT+TGG | - | chr5_4:5086304-5086323 | Msa0831970:intron | 50.0% |
| AAGGGAATTGCTGGCCAAAC+AGG | - | chr5_4:5086355-5086374 | Msa0831970:intron | 50.0% | |
| !! | GACGGTGATGATTGACTCGA+TGG | + | chr5_4:5086464-5086483 | None:intergenic | 50.0% |
| ! | CGACAATGATGATGAGGACG+AGG | - | chr5_4:5086511-5086530 | Msa0831970:intron | 50.0% |
| ! | ATGATGATGAGGACGAGGAG+AGG | - | chr5_4:5086516-5086535 | Msa0831970:intron | 50.0% |
| ! | TGATGATGAGGACGAGGAGA+GGG | - | chr5_4:5086517-5086536 | Msa0831970:intron | 50.0% |
| TAGGTTTGCCCCAACCTGTT+AGG | - | chr5_4:5085702-5085721 | Msa0831970:CDS | 50.0% | |
| !! | TGTTAGGCACAGGGTGTTGT+GGG | - | chr5_4:5085718-5085737 | Msa0831970:CDS | 50.0% |
| !!! | GTTGTTTTGGATCTGTCGGG+TGG | - | chr5_4:5085770-5085789 | Msa0831970:CDS | 50.0% |
| TCTGTCGGGTGGTGTTTGTT+TGG | - | chr5_4:5085781-5085800 | Msa0831970:CDS | 50.0% | |
| TGGGCAAAGGCTGGAGAAAA+AGG | - | chr5_4:5086107-5086126 | Msa0831970:intron | 50.0% | |
| GGCTGGAGAAAAAGGAAGAC+CGG | - | chr5_4:5086115-5086134 | Msa0831970:intron | 50.0% | |
| GGAGAAAAAGGAAGACCGGA+TGG | - | chr5_4:5086119-5086138 | Msa0831970:intron | 50.0% | |
| GAAAAAGGAAGACCGGATGG+AGG | - | chr5_4:5086122-5086141 | Msa0831970:intron | 50.0% | |
| ! | GGTCTTCCTTTTCCTCCATC+CGG | + | chr5_4:5086137-5086156 | None:intergenic | 50.0% |
| GGATGGAGGAAAAGGAAGAC+CGG | - | chr5_4:5086136-5086155 | Msa0831970:intron | 50.0% | |
| GATGGAGGAAAAGGAAGACC+GGG | - | chr5_4:5086137-5086156 | Msa0831970:intron | 50.0% | |
| ! | TATGGTCTTGGGCCATTAGC+CGG | - | chr5_4:5086167-5086186 | Msa0831970:intron | 50.0% |
| ! | TGTACCACATTGCCGGCTAA+TGG | + | chr5_4:5086182-5086201 | None:intergenic | 50.0% |
| TTAGCCGGCAATGTGGTACA+TGG | - | chr5_4:5086182-5086201 | Msa0831970:intron | 50.0% | |
| CTAGAACGAGATGAGGACTC+TGG | + | chr5_4:5086233-5086252 | None:intergenic | 50.0% | |
| ! | GCAATCTCAAAAGGAGGCGT+TGG | - | chr5_4:5086304-5086323 | Msa0831970:intron | 50.0% |
| AAGGGAATTGCTGGCCAAAC+AGG | - | chr5_4:5086355-5086374 | Msa0831970:intron | 50.0% | |
| !! | GACGGTGATGATTGACTCGA+TGG | + | chr5_4:5086464-5086483 | None:intergenic | 50.0% |
| ! | CGACAATGATGATGAGGACG+AGG | - | chr5_4:5086511-5086530 | Msa0831970:intron | 50.0% |
| ! | ATGATGATGAGGACGAGGAG+AGG | - | chr5_4:5086516-5086535 | Msa0831970:intron | 50.0% |
| ! | TGATGATGAGGACGAGGAGA+GGG | - | chr5_4:5086517-5086536 | Msa0831970:intron | 50.0% |
| ACCCTGTGCCTAACAGGTTG+GGG | + | chr5_4:5085713-5085732 | None:intergenic | 55.0% | |
| CACCCTGTGCCTAACAGGTT+GGG | + | chr5_4:5085714-5085733 | None:intergenic | 55.0% | |
| ACACCCTGTGCCTAACAGGT+TGG | + | chr5_4:5085715-5085734 | None:intergenic | 55.0% | |
| CACAACACCCTGTGCCTAAC+AGG | + | chr5_4:5085719-5085738 | None:intergenic | 55.0% | |
| !! | CTGTTAGGCACAGGGTGTTG+TGG | - | chr5_4:5085717-5085736 | Msa0831970:CDS | 55.0% |
| GTCGGGTGGTGTTTGTTTGG+CGG | - | chr5_4:5085784-5085803 | Msa0831970:CDS | 55.0% | |
| GGAAGACCGGATGGAGGAAA+AGG | - | chr5_4:5086128-5086147 | Msa0831970:intron | 55.0% | |
| GAACGAGATGAGGACTCTGG+TGG | + | chr5_4:5086230-5086249 | None:intergenic | 55.0% | |
| ATTGCTGGCCAAACAGGCAG+AGG | - | chr5_4:5086361-5086380 | Msa0831970:intron | 55.0% | |
| GGATGGGTGGCATGAAGAGT+AGG | - | chr5_4:5086417-5086436 | Msa0831970:intron | 55.0% | |
| ACCCTGTGCCTAACAGGTTG+GGG | + | chr5_4:5085713-5085732 | None:intergenic | 55.0% | |
| CACCCTGTGCCTAACAGGTT+GGG | + | chr5_4:5085714-5085733 | None:intergenic | 55.0% | |
| ACACCCTGTGCCTAACAGGT+TGG | + | chr5_4:5085715-5085734 | None:intergenic | 55.0% | |
| CACAACACCCTGTGCCTAAC+AGG | + | chr5_4:5085719-5085738 | None:intergenic | 55.0% | |
| !! | CTGTTAGGCACAGGGTGTTG+TGG | - | chr5_4:5085717-5085736 | Msa0831970:CDS | 55.0% |
| GTCGGGTGGTGTTTGTTTGG+CGG | - | chr5_4:5085784-5085803 | Msa0831970:CDS | 55.0% | |
| GGAAGACCGGATGGAGGAAA+AGG | - | chr5_4:5086128-5086147 | Msa0831970:intron | 55.0% | |
| GAACGAGATGAGGACTCTGG+TGG | + | chr5_4:5086230-5086249 | None:intergenic | 55.0% | |
| ATTGCTGGCCAAACAGGCAG+AGG | - | chr5_4:5086361-5086380 | Msa0831970:intron | 55.0% | |
| GGATGGGTGGCATGAAGAGT+AGG | - | chr5_4:5086417-5086436 | Msa0831970:intron | 55.0% | |
| TGCCCCAACCTGTTAGGCAC+AGG | - | chr5_4:5085708-5085727 | Msa0831970:CDS | 60.0% | |
| GCCCCAACCTGTTAGGCACA+GGG | - | chr5_4:5085709-5085728 | Msa0831970:CDS | 60.0% | |
| TGGGCCATTAGCCGGCAATG+TGG | - | chr5_4:5086175-5086194 | Msa0831970:intron | 60.0% | |
| GATGAGGACTCTGGTGGAGG+AGG | + | chr5_4:5086224-5086243 | None:intergenic | 60.0% | |
| CGAGATGAGGACTCTGGTGG+AGG | + | chr5_4:5086227-5086246 | None:intergenic | 60.0% | |
| TGCCCCAACCTGTTAGGCAC+AGG | - | chr5_4:5085708-5085727 | Msa0831970:CDS | 60.0% | |
| GCCCCAACCTGTTAGGCACA+GGG | - | chr5_4:5085709-5085728 | Msa0831970:CDS | 60.0% | |
| TGGGCCATTAGCCGGCAATG+TGG | - | chr5_4:5086175-5086194 | Msa0831970:intron | 60.0% | |
| GATGAGGACTCTGGTGGAGG+AGG | + | chr5_4:5086224-5086243 | None:intergenic | 60.0% | |
| CGAGATGAGGACTCTGGTGG+AGG | + | chr5_4:5086227-5086246 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 5085571 | 5086559 | 5085571 | ID=Msa0831970;Name=Msa0831970 |
| chr5_4 | mRNA | 5085571 | 5086559 | 5085571 | ID=Msa0831970-mRNA-1;Parent=Msa0831970;Name=Msa0831970-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|0.5|1|1|2|0|174 |
| chr5_4 | exon | 5086554 | 5086559 | 5086554 | ID=Msa0831970-mRNA-1:exon:2130;Parent=Msa0831970-mRNA-1 |
| chr5_4 | exon | 5085571 | 5086089 | 5085571 | ID=Msa0831970-mRNA-1:exon:2129;Parent=Msa0831970-mRNA-1 |
| chr5_4 | CDS | 5086554 | 5086559 | 5086554 | ID=Msa0831970-mRNA-1:cds;Parent=Msa0831970-mRNA-1 |
| chr5_4 | CDS | 5085571 | 5086089 | 5085571 | ID=Msa0831970-mRNA-1:cds;Parent=Msa0831970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
