Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0751800 | A0A396I7L4 | 90.972 | 144 | 13 | 0 | 4 | 147 | 5 | 148 | 9.12e-80 | 244 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0711340 | Msa0751800 | 0.819780 | 9.701797e-53 | -8.615850e-47 |
| Msa0751790 | Msa0751800 | 0.994712 | 1.497802e-209 | -8.615850e-47 |
| Msa0751800 | Msa0794260 | 0.808198 | 3.484772e-50 | -8.615850e-47 |
| Msa0751800 | Msa0831970 | 0.826561 | 2.536062e-54 | -8.615850e-47 |
| Msa0751800 | Msa1438250 | 0.819706 | 1.009106e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0751800 | MtrunA17_Chr4g0029871 | 90.972 | 144 | 13 | 0 | 4 | 147 | 5 | 148 | 1.76e-83 | 244 |
| Msa0751800 | MtrunA17_Chr1g0176161 | 90.244 | 164 | 16 | 0 | 4 | 167 | 346 | 509 | 1.27e-80 | 248 |
| Msa0751800 | MtrunA17_Chr7g0219321 | 85.106 | 94 | 14 | 0 | 1 | 94 | 24 | 117 | 1.02e-46 | 149 |
| Msa0751800 | MtrunA17_Chr4g0025081 | 90.141 | 71 | 7 | 0 | 4 | 74 | 419 | 489 | 5.90e-41 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 51 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCCGTTAAACTTGAATTA+TGG | 0.156112 | 5_2:-5303176 | Msa0751800:CDS |
| TTAACGGGGAAGGGAATTTC+TGG | 0.210406 | 5_2:+5303189 | None:intergenic |
| AGAATTGAAGAATGAGTTAA+AGG | 0.230787 | 5_2:-5302926 | Msa0751800:CDS |
| CCCCGTTAAACTTGAATTAT+GGG | 0.265925 | 5_2:-5303175 | Msa0751800:CDS |
| TCTCATTTCCTCTGCCTGTT+TGG | 0.282668 | 5_2:+5302894 | None:intergenic |
| TGGGCAAAGGCTGGAGAAAA+AGG | 0.320847 | 5_2:-5303156 | Msa0751800:CDS |
| GCCCATAATTCAAGTTTAAC+GGG | 0.343194 | 5_2:+5303174 | None:intergenic |
| TCAAAAGGATGGCTACAAAA+AGG | 0.355846 | 5_2:-5302867 | Msa0751800:CDS |
| TGCCCATAATTCAAGTTTAA+CGG | 0.375309 | 5_2:+5303173 | None:intergenic |
| TGTACCACATTGCCGGCTAA+TGG | 0.387321 | 5_2:+5303084 | None:intergenic |
| AAAGGAATTGCTGGCCAAAC+AGG | 0.407225 | 5_2:-5302908 | Msa0751800:CDS |
| ATCTCCATGTACCACATTGC+CGG | 0.408976 | 5_2:+5303077 | None:intergenic |
| CCGGGTAGAATATACGGTCT+TGG | 0.429236 | 5_2:-5303108 | Msa0751800:CDS |
| GGAAGACCGGATGGAGGAAA+AGG | 0.440236 | 5_2:-5303135 | Msa0751800:CDS |
| GAATGAGTTAAAGGAATTGC+TGG | 0.445931 | 5_2:-5302917 | Msa0751800:CDS |
| GGAAGACCGGGTAGAATATA+CGG | 0.465058 | 5_2:-5303114 | Msa0751800:CDS |
| AAGGGAATTTCTGGATATGA+TGG | 0.474904 | 5_2:+5303198 | None:intergenic |
| CCAGGAGTTGGAATCTCAAA+AGG | 0.479857 | 5_2:-5302968 | Msa0751800:CDS |
| AGGAAATGAGAAAACTCAAA+AGG | 0.492661 | 5_2:-5302882 | Msa0751800:CDS |
| CTTGAATTATGGGCAAAGGC+TGG | 0.496169 | 5_2:-5303165 | Msa0751800:CDS |
| CGGGTAGAATATACGGTCTT+GGG | 0.498203 | 5_2:-5303107 | Msa0751800:CDS |
| TACGGTCTTGGGCCATTAGC+CGG | 0.503522 | 5_2:-5303096 | Msa0751800:CDS |
| TAATTCAAGTTTAACGGGGA+AGG | 0.508106 | 5_2:+5303179 | None:intergenic |
| GGATGGGTGGCATGAAGAGT+AGG | 0.508484 | 5_2:-5302846 | Msa0751800:CDS |
| TGATGATGAGGACGAGGAGA+GGG | 0.515380 | 5_2:-5302746 | Msa0751800:CDS |
| AATTCAAGTTTAACGGGGAA+GGG | 0.515437 | 5_2:+5303180 | None:intergenic |
| GGAATCTCAAAAGGAGGTGT+TGG | 0.528815 | 5_2:-5302959 | Msa0751800:CDS |
| GATGAGGACTCTGGTGGAGG+AGG | 0.536279 | 5_2:+5303042 | None:intergenic |
| ATTGCTGGCCAAACAGGCAG+AGG | 0.545974 | 5_2:-5302902 | Msa0751800:CDS |
| ATGATGATGAGGACGAGGAG+AGG | 0.549464 | 5_2:-5302747 | Msa0751800:CDS |
| ACAACGAATGAACCAGGAGT+TGG | 0.549466 | 5_2:-5302980 | Msa0751800:CDS |
| TAAACTTGAATTATGGGCAA+AGG | 0.553794 | 5_2:-5303169 | Msa0751800:CDS |
| TTAGCCGGCAATGTGGTACA+TGG | 0.555469 | 5_2:-5303081 | Msa0751800:CDS |
| GGATGGAGGAAAAGGAAGAC+CGG | 0.558193 | 5_2:-5303127 | Msa0751800:CDS |
| TGAGATGAGGACTCTGGTGG+AGG | 0.559280 | 5_2:+5303039 | None:intergenic |
| CTAGAATGAGATGAGGACTC+TGG | 0.559382 | 5_2:+5303033 | None:intergenic |
| AATGAGAAAACTCAAAAGGA+TGG | 0.571124 | 5_2:-5302878 | Msa0751800:CDS |
| ATCATTGCTTGCATCTCAAG+AGG | 0.574336 | 5_2:+5303003 | None:intergenic |
| CGAAAATGATGATGAGGACG+AGG | 0.576903 | 5_2:-5302752 | Msa0751800:CDS |
| GACGGTGATGATTGACTCGA+TGG | 0.597029 | 5_2:+5302802 | None:intergenic |
| GTTCGGTCTTCTTGAACTGA+CGG | 0.599946 | 5_2:+5302784 | None:intergenic |
| CCCATAATTCAAGTTTAACG+GGG | 0.605328 | 5_2:+5303175 | None:intergenic |
| AGCTTATCGCACGAATGCAG+CGG | 0.608768 | 5_2:-5303247 | Msa0751800:CDS |
| GAATGAGATGAGGACTCTGG+TGG | 0.616334 | 5_2:+5303036 | None:intergenic |
| CAACTCTCTAGAATGAGATG+AGG | 0.628554 | 5_2:+5303026 | None:intergenic |
| CCAAGACCGTATATTCTACC+CGG | 0.630274 | 5_2:+5303108 | None:intergenic |
| TGACGACGAAAATGATGATG+AGG | 0.640400 | 5_2:-5302758 | Msa0751800:CDS |
| GATGGAGGAAAAGGAAGACC+GGG | 0.640530 | 5_2:-5303126 | Msa0751800:CDS |
| AATGATACAACGAATGAACC+AGG | 0.652325 | 5_2:-5302986 | Msa0751800:CDS |
| GGAGTTGGAATCTCAAAAGG+AGG | 0.678192 | 5_2:-5302965 | Msa0751800:CDS |
| TGGGCCATTAGCCGGCAATG+TGG | 0.702771 | 5_2:-5303088 | Msa0751800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTATTTAATATATTT+TGG | + | chr5_2:5303347-5303366 | None:intergenic | 0.0% |
| !!! | TCTTTAAAAAAAATATTTAG+TGG | - | chr5_2:5302840-5302859 | Msa0751800:CDS | 10.0% |
| !!! | CTTTAAAAAAAATATTTAGT+GGG | - | chr5_2:5302841-5302860 | Msa0751800:CDS | 10.0% |
| !! | TAGTATATCAATAATATTAA+TGG | - | chr5_2:5303256-5303275 | Msa0751800:intron | 10.0% |
| !! | AGTATATCAATAATATTAAT+GGG | - | chr5_2:5303257-5303276 | Msa0751800:intron | 10.0% |
| !! | AAAATAAAAATTATTGAAGA+CGG | + | chr5_2:5303290-5303309 | None:intergenic | 10.0% |
| !! | TCTTTATATATGTTTATATT+TGG | - | chr5_2:5303645-5303664 | Msa0751800:intron | 10.0% |
| !! | CTTTATATATGTTTATATTT+GGG | - | chr5_2:5303646-5303665 | Msa0751800:intron | 10.0% |
| !! | ATTAATGATATTAAATAGAT+TGG | - | chr5_2:5304012-5304031 | Msa0751800:intron | 10.0% |
| !! | TTAATGATATTAAATAGATT+GGG | - | chr5_2:5304013-5304032 | Msa0751800:intron | 10.0% |
| !!! | TTTTTCTTTGATTTATTTTT+TGG | - | chr5_2:5304645-5304664 | Msa0751800:intron | 10.0% |
| !! | GTAATTAATAAAAATGTTAG+CGG | - | chr5_2:5302783-5302802 | Msa0751800:CDS | 15.0% |
| !! | TAATTAATAAAAATGTTAGC+GGG | - | chr5_2:5302784-5302803 | Msa0751800:CDS | 15.0% |
| !!! | TTTCTAAAAAAAATGTTAGT+CGG | - | chr5_2:5302810-5302829 | Msa0751800:CDS | 15.0% |
| !! | GATTAGTAATAAAAATATTG+TGG | - | chr5_2:5303161-5303180 | Msa0751800:CDS | 15.0% |
| !! | TTTATTCATTGTTTGAAAAA+TGG | - | chr5_2:5303222-5303241 | Msa0751800:CDS | 15.0% |
| !!! | TTTTATTTTTAAACCAAAAG+TGG | - | chr5_2:5303301-5303320 | Msa0751800:intron | 15.0% |
| !!! | TTTATTTTTAAACCAAAAGT+GGG | - | chr5_2:5303302-5303321 | Msa0751800:intron | 15.0% |
| !!! | TTATTTAATATATTTTGGTG+AGG | + | chr5_2:5303342-5303361 | None:intergenic | 15.0% |
| !! | AATATATACAATAGAAAAAG+AGG | - | chr5_2:5303364-5303383 | Msa0751800:intron | 15.0% |
| !! | AAAATACCTTAGATATTTAA+TGG | + | chr5_2:5303992-5304011 | None:intergenic | 15.0% |
| !! | GCAAATTTAATATATACATA+TGG | + | chr5_2:5304116-5304135 | None:intergenic | 15.0% |
| !!! | ATCATTTTGTTAGTTAAATT+AGG | - | chr5_2:5304220-5304239 | Msa0751800:intron | 15.0% |
| !!! | ATATCATATTTTAGAAATAC+TGG | - | chr5_2:5304384-5304403 | Msa0751800:intron | 15.0% |
| !! | TTATATGCTTTAGCAAATTT+AGG | + | chr5_2:5303518-5303537 | None:intergenic | 20.0% |
| !! | GATATTTAATGGAGAAATAA+AGG | + | chr5_2:5303981-5304000 | None:intergenic | 20.0% |
| !! | ATTTCTCCATTAAATATCTA+AGG | - | chr5_2:5303983-5304002 | Msa0751800:intron | 20.0% |
| !! | TATTAACCAATTAGAACATA+TGG | + | chr5_2:5304138-5304157 | None:intergenic | 20.0% |
| !! | AAAAACATTCCAAAAATCTA+AGG | + | chr5_2:5304630-5304649 | None:intergenic | 20.0% |
| !!! | CTTTGATTTATTTTTTGGAT+TGG | - | chr5_2:5304650-5304669 | Msa0751800:intron | 20.0% |
| !!! | GGTTGTTGCTTTTTTTTTTT+TGG | - | chr5_2:5303072-5303091 | Msa0751800:CDS | 25.0% |
| !!! | ATATTTGCATTGATTTTGCT+AGG | - | chr5_2:5303191-5303210 | Msa0751800:CDS | 25.0% |
| !!! | TCTTAAATTTCTGAGAGTTT+TGG | + | chr5_2:5303400-5303419 | None:intergenic | 25.0% |
| ! | AACAGAATACTCACTAATTT+GGG | - | chr5_2:5303451-5303470 | Msa0751800:intron | 25.0% |
| ! | GTATGAGTGTTTAACAAATT+TGG | + | chr5_2:5303599-5303618 | None:intergenic | 25.0% |
| ! | AATTTGCCATATGTTCTAAT+TGG | - | chr5_2:5304129-5304148 | Msa0751800:intron | 25.0% |
| ! | AAGCATCAAATAAAAACGAA+AGG | + | chr5_2:5304194-5304213 | None:intergenic | 25.0% |
| ! | AGAATTGAAGAATGAGTTAA+AGG | - | chr5_2:5305136-5305155 | Msa0751800:intron | 25.0% |
| !!! | AATTTCTGAGAGTTTTGGTT+TGG | + | chr5_2:5303395-5303414 | None:intergenic | 30.0% |
| TATTCTGTTGGAAACAAGTT+TGG | + | chr5_2:5303440-5303459 | None:intergenic | 30.0% | |
| CAAATTAGTGAGTATTCTGT+TGG | + | chr5_2:5303452-5303471 | None:intergenic | 30.0% | |
| CAACAGAATACTCACTAATT+TGG | - | chr5_2:5303450-5303469 | Msa0751800:intron | 30.0% | |
| CGCATTAATCACATATAAAC+TGG | + | chr5_2:5303940-5303959 | None:intergenic | 30.0% | |
| ! | GTTTCTGAGAATATCTTAGT+AGG | - | chr5_2:5304260-5304279 | Msa0751800:intron | 30.0% |
| ATCATAATTTCCAGCAATAC+AGG | + | chr5_2:5304288-5304307 | None:intergenic | 30.0% | |
| TGTATTGCTGGAAATTATGA+TGG | - | chr5_2:5304287-5304306 | Msa0751800:intron | 30.0% | |
| !! | TTTTTCTGTTGCTGTTGTTT+TGG | - | chr5_2:5304489-5304508 | Msa0751800:intron | 30.0% |
| ! | GTCTCATTACCTTAGATTTT+TGG | - | chr5_2:5304618-5304637 | Msa0751800:intron | 30.0% |
| ! | TGCCCATAATTCAAGTTTAA+CGG | + | chr5_2:5304892-5304911 | None:intergenic | 30.0% |
| TAAACTTGAATTATGGGCAA+AGG | - | chr5_2:5304893-5304912 | Msa0751800:intron | 30.0% | |
| AGGAAATGAGAAAACTCAAA+AGG | - | chr5_2:5305180-5305199 | Msa0751800:intron | 30.0% | |
| AATGAGAAAACTCAAAAGGA+TGG | - | chr5_2:5305184-5305203 | Msa0751800:intron | 30.0% | |
| ! | TTTTGGATCCACTTGTTCAT+TGG | - | chr5_2:5303089-5303108 | Msa0751800:CDS | 35.0% |
| ATAACAAGCCAATGAACAAG+TGG | + | chr5_2:5303100-5303119 | None:intergenic | 35.0% | |
| !! | GTTCATTGGCTTGTTATTTG+AGG | - | chr5_2:5303103-5303122 | Msa0751800:CDS | 35.0% |
| ! | ATACTCTAATTGCCCACTTT+TGG | + | chr5_2:5303317-5303336 | None:intergenic | 35.0% |
| CATTGTCAATTAGTGCTTGT+TGG | - | chr5_2:5304162-5304181 | Msa0751800:intron | 35.0% | |
| !! | TTCTGTTCTTGCGTTTTTAG+AGG | - | chr5_2:5304407-5304426 | Msa0751800:intron | 35.0% |
| !! | TTGCGTTTTTAGAGGTTGTT+AGG | - | chr5_2:5304415-5304434 | Msa0751800:intron | 35.0% |
| ACAGCAACAGAAAAACAGTT+GGG | + | chr5_2:5304484-5304503 | None:intergenic | 35.0% | |
| AACAGCAACAGAAAAACAGT+TGG | + | chr5_2:5304485-5304504 | None:intergenic | 35.0% | |
| TGTTAGCAGATTTCTTAGGT+TGG | - | chr5_2:5304575-5304594 | Msa0751800:intron | 35.0% | |
| ! | GGCTGCTTTATTGTATATGT+AGG | - | chr5_2:5304596-5304615 | Msa0751800:intron | 35.0% |
| !!! | ATTTTTTGGATTGGAGCCTT+TGG | - | chr5_2:5304659-5304678 | Msa0751800:intron | 35.0% |
| !!! | CTTGTGGCTTTTTTCTGTTT+CGG | - | chr5_2:5304720-5304739 | Msa0751800:intron | 35.0% |
| ! | AAGGGAATTTCTGGATATGA+TGG | + | chr5_2:5304867-5304886 | None:intergenic | 35.0% |
| ! | AATTCAAGTTTAACGGGGAA+GGG | + | chr5_2:5304885-5304904 | None:intergenic | 35.0% |
| ! | TAATTCAAGTTTAACGGGGA+AGG | + | chr5_2:5304886-5304905 | None:intergenic | 35.0% |
| TCCCCGTTAAACTTGAATTA+TGG | - | chr5_2:5304886-5304905 | Msa0751800:intron | 35.0% | |
| ! | CCCATAATTCAAGTTTAACG+GGG | + | chr5_2:5304890-5304909 | None:intergenic | 35.0% |
| CCCCGTTAAACTTGAATTAT+GGG | - | chr5_2:5304887-5304906 | Msa0751800:intron | 35.0% | |
| ! | GCCCATAATTCAAGTTTAAC+GGG | + | chr5_2:5304891-5304910 | None:intergenic | 35.0% |
| AATGATACAACGAATGAACC+AGG | - | chr5_2:5305076-5305095 | Msa0751800:intron | 35.0% | |
| GAATGAGTTAAAGGAATTGC+TGG | - | chr5_2:5305145-5305164 | Msa0751800:intron | 35.0% | |
| TCAAAAGGATGGCTACAAAA+AGG | - | chr5_2:5305195-5305214 | Msa0751800:intron | 35.0% | |
| CTCAAAATGGATCGAAAGCA+AGG | + | chr5_2:5303033-5303052 | None:intergenic | 40.0% | |
| ! | CTTGCTTTCGATCCATTTTG+AGG | - | chr5_2:5303031-5303050 | Msa0751800:CDS | 40.0% |
| !!! | CTTTCGATCCATTTTGAGGT+TGG | - | chr5_2:5303035-5303054 | Msa0751800:CDS | 40.0% |
| ATTGGGTAGAGATCCTTATC+CGG | - | chr5_2:5304030-5304049 | Msa0751800:intron | 40.0% | |
| ACTCGTTTCAGTCAGAATCT+TGG | - | chr5_2:5304070-5304089 | Msa0751800:intron | 40.0% | |
| GTTTCAGTCAGAATCTTGGT+CGG | - | chr5_2:5304074-5304093 | Msa0751800:intron | 40.0% | |
| ! | GTCAATTAGTGCTTGTTGGT+TGG | - | chr5_2:5304166-5304185 | Msa0751800:intron | 40.0% |
| !!! | TGCTGTTGTTTTGGATCTGT+CGG | - | chr5_2:5304498-5304517 | Msa0751800:intron | 40.0% |
| ! | CGGTTTGATTTCAAAGGCTT+TGG | - | chr5_2:5304536-5304555 | Msa0751800:intron | 40.0% |
| CGTGTGTTAGCAGATTTCTT+AGG | - | chr5_2:5304571-5304590 | Msa0751800:intron | 40.0% | |
| TCTGTTACTGACAGTGGTTA+GGG | - | chr5_2:5304690-5304709 | Msa0751800:intron | 40.0% | |
| !! | CAACTCTCTAGAATGAGATG+AGG | + | chr5_2:5305039-5305058 | None:intergenic | 40.0% |
| ATCATTGCTTGCATCTCAAG+AGG | + | chr5_2:5305062-5305081 | None:intergenic | 40.0% | |
| AAGGATGGCTACAAAAAGGA+TGG | - | chr5_2:5305199-5305218 | Msa0751800:intron | 40.0% | |
| AGGATGGCTACAAAAAGGAT+GGG | - | chr5_2:5305200-5305219 | Msa0751800:intron | 40.0% | |
| ! | CATTTTCGTCGTCATGTGTT+CGG | + | chr5_2:5305298-5305317 | None:intergenic | 40.0% |
| ! | TGACGACGAAAATGATGATG+AGG | - | chr5_2:5305304-5305323 | Msa0751800:intron | 40.0% |
| AAAAAGCAACAACCAGCCAG+CGG | + | chr5_2:5303066-5303085 | None:intergenic | 45.0% | |
| TCATGGATCTCTTCCGGATA+AGG | + | chr5_2:5304046-5304065 | None:intergenic | 45.0% | |
| GTCTCTTCATGGATCTCTTC+CGG | + | chr5_2:5304052-5304071 | None:intergenic | 45.0% | |
| GACTGAAACGAGTCTCTTCA+TGG | + | chr5_2:5304063-5304082 | None:intergenic | 45.0% | |
| TTAGTAGGAGCCTGTATTGC+TGG | - | chr5_2:5304275-5304294 | Msa0751800:intron | 45.0% | |
| !!! | GCTGTTGTTTTGGATCTGTC+GGG | - | chr5_2:5304499-5304518 | Msa0751800:intron | 45.0% |
| ! | GTTCGGCGGTTTGATTTCAA+AGG | - | chr5_2:5304530-5304549 | Msa0751800:intron | 45.0% |
| ! | AAAGGCTTTGGCTGATAGTG+AGG | - | chr5_2:5304548-5304567 | Msa0751800:intron | 45.0% |
| GTAACAGAGCAGAATGCCAA+AGG | + | chr5_2:5304678-5304697 | None:intergenic | 45.0% | |
| TTCTGCTCTGTTACTGACAG+TGG | - | chr5_2:5304684-5304703 | Msa0751800:intron | 45.0% | |
| CTCTGTTACTGACAGTGGTT+AGG | - | chr5_2:5304689-5304708 | Msa0751800:intron | 45.0% | |
| !! | TGGTTAGGGAGTGTTTCTTG+TGG | - | chr5_2:5304704-5304723 | Msa0751800:intron | 45.0% |
| ! | GAATGCAGCGGAGTTTTTGA+AGG | - | chr5_2:5304827-5304846 | Msa0751800:intron | 45.0% |
| TTAACGGGGAAGGGAATTTC+TGG | + | chr5_2:5304876-5304895 | None:intergenic | 45.0% | |
| CTTGAATTATGGGCAAAGGC+TGG | - | chr5_2:5304897-5304916 | Msa0751800:intron | 45.0% | |
| GGAAGACCGGGTAGAATATA+CGG | - | chr5_2:5304948-5304967 | Msa0751800:intron | 45.0% | |
| CCAAGACCGTATATTCTACC+CGG | + | chr5_2:5304957-5304976 | None:intergenic | 45.0% | |
| CGGGTAGAATATACGGTCTT+GGG | - | chr5_2:5304955-5304974 | Msa0751800:intron | 45.0% | |
| ATCTCCATGTACCACATTGC+CGG | + | chr5_2:5304988-5305007 | None:intergenic | 45.0% | |
| CTAGAATGAGATGAGGACTC+TGG | + | chr5_2:5305032-5305051 | None:intergenic | 45.0% | |
| ACAACGAATGAACCAGGAGT+TGG | - | chr5_2:5305082-5305101 | Msa0751800:intron | 45.0% | |
| !!! | CCTTTTGAGATTCCAACTCC+TGG | + | chr5_2:5305097-5305116 | None:intergenic | 45.0% |
| CCAGGAGTTGGAATCTCAAA+AGG | - | chr5_2:5305094-5305113 | Msa0751800:intron | 45.0% | |
| GGAGTTGGAATCTCAAAAGG+AGG | - | chr5_2:5305097-5305116 | Msa0751800:intron | 45.0% | |
| ! | GGAATCTCAAAAGGAGGTGT+TGG | - | chr5_2:5305103-5305122 | Msa0751800:intron | 45.0% |
| AAAGGAATTGCTGGCCAAAC+AGG | - | chr5_2:5305154-5305173 | Msa0751800:intron | 45.0% | |
| TCTCATTTCCTCTGCCTGTT+TGG | + | chr5_2:5305171-5305190 | None:intergenic | 45.0% | |
| ATGGCTACAAAAAGGATGGG+TGG | - | chr5_2:5305203-5305222 | Msa0751800:intron | 45.0% | |
| GTTCGGTCTTCTTGAACTGA+CGG | + | chr5_2:5305281-5305300 | None:intergenic | 45.0% | |
| ! | CGAAAATGATGATGAGGACG+AGG | - | chr5_2:5305310-5305329 | Msa0751800:intron | 45.0% |
| !!! | TTTATTTAAAATTTATTCAA+TGG | - | chr5_2:5303139-5303158 | Msa0751800:CDS | 5.0% |
| !!! | TATTTATTAATTTTCTTTAT+AGG | - | chr5_2:5304791-5304810 | Msa0751800:intron | 5.0% |
| CGGCAACACCAACCTCAAAA+TGG | + | chr5_2:5303046-5303065 | None:intergenic | 50.0% | |
| TAGGTTTGCCCCAACCTGTT+AGG | - | chr5_2:5304434-5304453 | Msa0751800:intron | 50.0% | |
| !!! | GTTGTTTTGGATCTGTCGGG+TGG | - | chr5_2:5304502-5304521 | Msa0751800:intron | 50.0% |
| TCTGTCGGGTGGTGTTTGTT+CGG | - | chr5_2:5304513-5304532 | Msa0751800:intron | 50.0% | |
| AGCTTATCGCACGAATGCAG+CGG | - | chr5_2:5304815-5304834 | Msa0751800:intron | 50.0% | |
| TGGGCAAAGGCTGGAGAAAA+AGG | - | chr5_2:5304906-5304925 | Msa0751800:intron | 50.0% | |
| GGCTGGAGAAAAAGGAAGAC+CGG | - | chr5_2:5304914-5304933 | Msa0751800:intron | 50.0% | |
| GGAGAAAAAGGAAGACCGGA+TGG | - | chr5_2:5304918-5304937 | Msa0751800:intron | 50.0% | |
| GAAAAAGGAAGACCGGATGG+AGG | - | chr5_2:5304921-5304940 | Msa0751800:intron | 50.0% | |
| ! | GGTCTTCCTTTTCCTCCATC+CGG | + | chr5_2:5304936-5304955 | None:intergenic | 50.0% |
| GGATGGAGGAAAAGGAAGAC+CGG | - | chr5_2:5304935-5304954 | Msa0751800:intron | 50.0% | |
| GATGGAGGAAAAGGAAGACC+GGG | - | chr5_2:5304936-5304955 | Msa0751800:intron | 50.0% | |
| CCGGGTAGAATATACGGTCT+TGG | - | chr5_2:5304954-5304973 | Msa0751800:intron | 50.0% | |
| ! | TGTACCACATTGCCGGCTAA+TGG | + | chr5_2:5304981-5305000 | None:intergenic | 50.0% |
| TTAGCCGGCAATGTGGTACA+TGG | - | chr5_2:5304981-5305000 | Msa0751800:intron | 50.0% | |
| GAATGAGATGAGGACTCTGG+TGG | + | chr5_2:5305029-5305048 | None:intergenic | 50.0% | |
| !! | GACGGTGATGATTGACTCGA+TGG | + | chr5_2:5305263-5305282 | None:intergenic | 50.0% |
| ! | ATGATGATGAGGACGAGGAG+AGG | - | chr5_2:5305315-5305334 | Msa0751800:intron | 50.0% |
| ! | TGATGATGAGGACGAGGAGA+GGG | - | chr5_2:5305316-5305335 | Msa0751800:intron | 50.0% |
| !! | TTTGAGGTTGGTGTTGCCGC+TGG | - | chr5_2:5303047-5303066 | Msa0751800:CDS | 55.0% |
| ACCCTGTGCCTAACAGGTTG+GGG | + | chr5_2:5304445-5304464 | None:intergenic | 55.0% | |
| CACCCTGTGCCTAACAGGTT+GGG | + | chr5_2:5304446-5304465 | None:intergenic | 55.0% | |
| !! | TGTTAGGCACAGGGTGCTGT+GGG | - | chr5_2:5304450-5304469 | Msa0751800:intron | 55.0% |
| GGAAGACCGGATGGAGGAAA+AGG | - | chr5_2:5304927-5304946 | Msa0751800:intron | 55.0% | |
| TACGGTCTTGGGCCATTAGC+CGG | - | chr5_2:5304966-5304985 | Msa0751800:intron | 55.0% | |
| TGAGATGAGGACTCTGGTGG+AGG | + | chr5_2:5305026-5305045 | None:intergenic | 55.0% | |
| ATTGCTGGCCAAACAGGCAG+AGG | - | chr5_2:5305160-5305179 | Msa0751800:intron | 55.0% | |
| GGATGGGTGGCATGAAGAGT+AGG | - | chr5_2:5305216-5305235 | Msa0751800:intron | 55.0% | |
| TGCCCCAACCTGTTAGGCAC+AGG | - | chr5_2:5304440-5304459 | Msa0751800:intron | 60.0% | |
| GCCCCAACCTGTTAGGCACA+GGG | - | chr5_2:5304441-5304460 | Msa0751800:intron | 60.0% | |
| GCACCCTGTGCCTAACAGGT+TGG | + | chr5_2:5304447-5304466 | None:intergenic | 60.0% | |
| CACAGCACCCTGTGCCTAAC+AGG | + | chr5_2:5304451-5304470 | None:intergenic | 60.0% | |
| !! | CTGTTAGGCACAGGGTGCTG+TGG | - | chr5_2:5304449-5304468 | Msa0751800:intron | 60.0% |
| GTCGGGTGGTGTTTGTTCGG+CGG | - | chr5_2:5304516-5304535 | Msa0751800:intron | 60.0% | |
| TGGGCCATTAGCCGGCAATG+TGG | - | chr5_2:5304974-5304993 | Msa0751800:intron | 60.0% | |
| GATGAGGACTCTGGTGGAGG+AGG | + | chr5_2:5305023-5305042 | None:intergenic | 60.0% | |
| !! | AGGTTGGTGTTGCCGCTGGC+TGG | - | chr5_2:5303051-5303070 | Msa0751800:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 5302726 | 5305358 | 5302726 | ID=Msa0751800;Name=Msa0751800 |
| chr5_2 | mRNA | 5302726 | 5305358 | 5302726 | ID=Msa0751800-mRNA-1;Parent=Msa0751800;Name=Msa0751800-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|0.5|1|1|2|0|184 |
| chr5_2 | exon | 5305350 | 5305358 | 5305350 | ID=Msa0751800-mRNA-1:exon:2150;Parent=Msa0751800-mRNA-1 |
| chr5_2 | exon | 5302726 | 5303271 | 5302726 | ID=Msa0751800-mRNA-1:exon:2149;Parent=Msa0751800-mRNA-1 |
| chr5_2 | CDS | 5305350 | 5305358 | 5305350 | ID=Msa0751800-mRNA-1:cds;Parent=Msa0751800-mRNA-1 |
| chr5_2 | CDS | 5302726 | 5303271 | 5302726 | ID=Msa0751800-mRNA-1:cds;Parent=Msa0751800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
