Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794260 | XP_024632968.2 | 81.164 | 292 | 37 | 2 | 77 | 350 | 218 | 509 | 7.26e-141 | 421 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794260 | A0A396JM14 | 81.164 | 292 | 37 | 2 | 77 | 350 | 218 | 509 | 3.47e-141 | 421 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0661870 | Msa0794260 | 0.822411 | 2.403351e-53 | -8.615850e-47 |
| Msa0711340 | Msa0794260 | 0.839948 | 1.167115e-57 | -8.615850e-47 |
| Msa0751790 | Msa0794260 | 0.802107 | 6.562003e-49 | -8.615850e-47 |
| Msa0751800 | Msa0794260 | 0.808198 | 3.484772e-50 | -8.615850e-47 |
| Msa0794260 | Msa0831970 | 0.927270 | 1.483864e-91 | -8.615850e-47 |
| Msa0794260 | Msa0885280 | 0.801534 | 8.604692e-49 | -8.615850e-47 |
| Msa0794260 | Msa1438250 | 0.802937 | 4.425657e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794260 | MtrunA17_Chr1g0176161 | 81.164 | 292 | 37 | 2 | 77 | 350 | 218 | 509 | 6.68e-145 | 421 |
| Msa0794260 | MtrunA17_Chr4g0025081 | 58.750 | 320 | 68 | 5 | 2 | 257 | 170 | 489 | 2.56e-112 | 337 |
| Msa0794260 | MtrunA17_Chr4g0029871 | 85.714 | 140 | 20 | 0 | 191 | 330 | 9 | 148 | 1.95e-70 | 218 |
| Msa0794260 | MtrunA17_Chr7g0219321 | 81.609 | 87 | 16 | 0 | 191 | 277 | 31 | 117 | 2.00e-37 | 130 |
| Msa0794260 | MtrunA17_Chr3g0086081 | 33.775 | 302 | 156 | 12 | 75 | 356 | 47 | 324 | 3.58e-27 | 110 |
| Msa0794260 | MtrunA17_Chr4g0010341 | 30.594 | 219 | 109 | 6 | 78 | 289 | 246 | 428 | 2.25e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 82 sgRNAs with CRISPR-Local
Find 354 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACCGTTAAACTTGAATTA+TGG | 0.151508 | 5_3:-6117906 | Msa0794260:CDS |
| TTAACGGTGAAGGGAATTTC+TGG | 0.208110 | 5_3:+6117919 | None:intergenic |
| CACCGTTAAACTTGAATTAT+GGG | 0.280520 | 5_3:-6117905 | Msa0794260:CDS |
| TCTCATTTCCTCTGCCTGTT+TGG | 0.282668 | 5_3:+6117624 | None:intergenic |
| TGCTACCCATGCTAGAAATT+TGG | 0.303942 | 5_3:-6118819 | Msa0794260:intron |
| TGGGCAAAGGCTGGAGAAAA+AGG | 0.320847 | 5_3:-6117886 | Msa0794260:CDS |
| TGCCCATAATTCAAGTTTAA+CGG | 0.338157 | 5_3:+6117903 | None:intergenic |
| GACTGAAACGAGTCTCTTCA+TGG | 0.345952 | 5_3:+6118666 | None:intergenic |
| AAGAATTGAAGAATGAGTTA+AGG | 0.346930 | 5_3:-6117657 | Msa0794260:CDS |
| TTGTAGAGAGAAACTTTCAT+AGG | 0.351118 | 5_3:-6119063 | Msa0794260:CDS |
| TCAAAAGGATGGCTACAAAA+AGG | 0.356867 | 5_3:-6117597 | Msa0794260:CDS |
| TCTGTTCATCTTGTTAGCTT+TGG | 0.360800 | 5_3:+6118889 | None:intergenic |
| TGTAAATTAGCGAAATAGAT+TGG | 0.383923 | 5_3:-6118714 | Msa0794260:intron |
| TGTACCACATTGCCGGCTAA+TGG | 0.387321 | 5_3:+6117814 | None:intergenic |
| AGAATTGAAGAATGAGTTAA+GGG | 0.389857 | 5_3:-6117656 | Msa0794260:CDS |
| CCGGGTATAATATATGGTCT+TGG | 0.395016 | 5_3:-6117838 | Msa0794260:CDS |
| AAGGGAATTGCTGGCCAAAC+AGG | 0.407225 | 5_3:-6117638 | Msa0794260:CDS |
| ATGCAAGAACTTATGCAAAC+TGG | 0.408469 | 5_3:-6119670 | Msa0794260:CDS |
| ATCTCCATGTACCACATTGC+CGG | 0.408976 | 5_3:+6117807 | None:intergenic |
| GAATGAGTTAAGGGAATTGC+TGG | 0.411267 | 5_3:-6117647 | Msa0794260:CDS |
| GGAAGACCGGGTATAATATA+TGG | 0.414732 | 5_3:-6117844 | Msa0794260:CDS |
| CATTGTCGTCGTCATGTGTT+CGG | 0.438800 | 5_3:+6117497 | None:intergenic |
| GGAAGACCGGATGGAGGAAA+AGG | 0.440236 | 5_3:-6117865 | Msa0794260:CDS |
| TCATGGATCTCTTTCAGATA+AGG | 0.457609 | 5_3:+6118683 | None:intergenic |
| CGGGTATAATATATGGTCTT+GGG | 0.465993 | 5_3:-6117837 | Msa0794260:CDS |
| TGTTGTTGTTGTTGCTGTTG+TGG | 0.470326 | 5_3:+6119613 | None:intergenic |
| CAAAGTGAAGAGGTACCGTC+TGG | 0.473813 | 5_3:-6119533 | Msa0794260:CDS |
| CCAGGAGTTGCAATCTCAAA+AGG | 0.474103 | 5_3:-6117698 | Msa0794260:CDS |
| ACTCGTTTCAGTCAGAATCT+TGG | 0.478465 | 5_3:-6118656 | Msa0794260:CDS |
| ATGAACAGAGCATCTATTGT+AGG | 0.484441 | 5_3:-6118875 | Msa0794260:CDS |
| AAGGGAATTTCTGGATATGA+TGG | 0.488396 | 5_3:+6117928 | None:intergenic |
| TATGGTCTTGGGCCATTAGC+CGG | 0.490564 | 5_3:-6117826 | Msa0794260:CDS |
| GGGAGTTGTTGCTGAAGTAT+TGG | 0.492978 | 5_3:-6118940 | Msa0794260:CDS |
| CTTGAATTATGGGCAAAGGC+TGG | 0.496169 | 5_3:-6117895 | Msa0794260:CDS |
| TCTCTACAAGAGTGTGATGA+TGG | 0.502500 | 5_3:+6119077 | None:intergenic |
| AGGAAATGAGAAAATTCAAA+AGG | 0.504200 | 5_3:-6117612 | Msa0794260:CDS |
| AGGCCGTCGATCAGCAAGTA+AGG | 0.505939 | 5_3:+6119636 | None:intergenic |
| GTAAATTAGCGAAATAGATT+GGG | 0.506673 | 5_3:-6118713 | Msa0794260:intron |
| TAATTCAAGTTTAACGGTGA+AGG | 0.507247 | 5_3:+6117909 | None:intergenic |
| GACGTCAGATCATTGAAGAC+TGG | 0.508470 | 5_3:-6119487 | Msa0794260:CDS |
| GGATGGGTGGCATGAAGAGT+AGG | 0.508484 | 5_3:-6117576 | Msa0794260:CDS |
| AATTCAAGTTTAACGGTGAA+GGG | 0.517772 | 5_3:+6117910 | None:intergenic |
| TAGCCTTACTTGCTGATCGA+CGG | 0.527267 | 5_3:-6119639 | Msa0794260:CDS |
| TTTATTGTATGATAAACGAC+AGG | 0.535732 | 5_3:-6119017 | Msa0794260:CDS |
| GCAATCTCAAAAGGAGGCGT+TGG | 0.538828 | 5_3:-6117689 | Msa0794260:CDS |
| TTGGACCCGTTCTTAAAATG+TGG | 0.539575 | 5_3:+6118908 | None:intergenic |
| AATGAGAAAATTCAAAAGGA+TGG | 0.547153 | 5_3:-6117608 | Msa0794260:CDS |
| CGAGATGAGGACTCTGGTGG+AGG | 0.547377 | 5_3:+6117769 | None:intergenic |
| TAAACTTGAATTATGGGCAA+AGG | 0.553794 | 5_3:-6117899 | Msa0794260:CDS |
| TGTAGAGAGAAACTTTCATA+GGG | 0.554612 | 5_3:-6119062 | Msa0794260:CDS |
| GATGAGGACTCTGGTGGAGG+AGG | 0.555009 | 5_3:+6117772 | None:intergenic |
| TTAGCCGGCAATGTGGTACA+TGG | 0.555469 | 5_3:-6117811 | Msa0794260:CDS |
| GGATGGAGGAAAAGGAAGAC+CGG | 0.558193 | 5_3:-6117857 | Msa0794260:CDS |
| TGATGATGAGGACGAGGAGA+GGG | 0.560715 | 5_3:-6117476 | Msa0794260:CDS |
| GACGGTGATGATTGACTCGA+TGG | 0.561145 | 5_3:+6117532 | None:intergenic |
| CAAAGTGAAGAGGTACCGTC+TGG | 0.562979 | 5_3:-6119556 | Msa0794260:CDS |
| ATTGCTGGCCAAACAGGCAG+AGG | 0.565425 | 5_3:-6117632 | Msa0794260:CDS |
| CTAGAACGAGATGAGGACTC+TGG | 0.570702 | 5_3:+6117763 | None:intergenic |
| TACCTCTTCACTTTGCCAGA+CGG | 0.574302 | 5_3:+6119541 | None:intergenic |
| ATCATTGCTTGCATCTCAAG+AGG | 0.574336 | 5_3:+6117733 | None:intergenic |
| CGACAATGATGATGAGGACG+AGG | 0.579199 | 5_3:-6117482 | Msa0794260:CDS |
| ACGTCAGATCATTGAAGACT+GGG | 0.583152 | 5_3:-6119486 | Msa0794260:CDS |
| GGAGGACAGTTGCACGCACA+AGG | 0.587496 | 5_3:-6118854 | Msa0794260:CDS |
| GTTCGGTCTTCTTGAATCGA+CGG | 0.592079 | 5_3:+6117514 | None:intergenic |
| ATGATGATGAGGACGAGGAG+AGG | 0.604569 | 5_3:-6117477 | Msa0794260:CDS |
| CAACTCTCTAGAACGAGATG+AGG | 0.605884 | 5_3:+6117756 | None:intergenic |
| TACCGTCTGGCAAAGTGAAG+AGG | 0.607035 | 5_3:-6119543 | Msa0794260:CDS |
| CCAAGACCATATATTATACC+CGG | 0.611702 | 5_3:+6117838 | None:intergenic |
| AACAGAGCATCTATTGTAGG+AGG | 0.612106 | 5_3:-6118872 | Msa0794260:CDS |
| CTACAAGAGTGTGATGATGG+AGG | 0.616083 | 5_3:+6119080 | None:intergenic |
| GAACGAGATGAGGACTCTGG+TGG | 0.623152 | 5_3:+6117766 | None:intergenic |
| GTCGATCAGCAAGTAAGGCT+AGG | 0.627995 | 5_3:+6119641 | None:intergenic |
| TGTTGTTGTTGCTGTTGTGG+AGG | 0.631861 | 5_3:+6119616 | None:intergenic |
| AATTATCGTACAGAATGGAT+CGG | 0.640466 | 5_3:-6118974 | Msa0794260:intron |
| GATGGAGGAAAAGGAAGACC+GGG | 0.640530 | 5_3:-6117856 | Msa0794260:CDS |
| AAAGTGAAGAGGTACCGTCT+GGG | 0.640540 | 5_3:-6119532 | Msa0794260:CDS |
| TGACGACGACAATGATGATG+AGG | 0.642696 | 5_3:-6117488 | Msa0794260:CDS |
| GTTTCAGTCAGAATCTTGGT+CGG | 0.647108 | 5_3:-6118652 | Msa0794260:intron |
| AATGATACAACGAATGAACC+AGG | 0.652325 | 5_3:-6117716 | Msa0794260:CDS |
| GGAGTTGCAATCTCAAAAGG+AGG | 0.669723 | 5_3:-6117695 | Msa0794260:CDS |
| TGGGCCATTAGCCGGCAATG+TGG | 0.702771 | 5_3:-6117818 | Msa0794260:CDS |
| CGTTGTTGATCACTCCCAGA+CGG | 0.723506 | 5_3:+6119518 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTATTTACTTTATAATA+TGG | - | chr5_3:6117969-6117988 | Msa0794260:intron | 10.0% |
| !!! | TATTTATTACTTTTCTTTAT+AGG | - | chr5_3:6119134-6119153 | Msa0794260:intron | 10.0% |
| !! | ATTGTATTTACTTTATAATA+TGG | - | chr5_3:6117969-6117988 | Msa0794260:intron | 10.0% |
| !!! | TATTTATTACTTTTCTTTAT+AGG | - | chr5_3:6119134-6119153 | Msa0794260:intron | 10.0% |
| !! | AATTAACAAATCAAATTTGT+AGG | - | chr5_3:6117786-6117805 | Msa0794260:CDS | 15.0% |
| !!! | TCTAATAATTTTTTTATTGC+AGG | - | chr5_3:6118015-6118034 | Msa0794260:intron | 15.0% |
| !! | GCAAATTTAATATATACATA+TGG | + | chr5_3:6118373-6118392 | None:intergenic | 15.0% |
| !!! | ATATCATATTTTAGAAATAC+TGG | - | chr5_3:6118793-6118812 | Msa0794260:intron | 15.0% |
| !! | AATTAACAAATCAAATTTGT+AGG | - | chr5_3:6117786-6117805 | Msa0794260:CDS | 15.0% |
| !!! | TCTAATAATTTTTTTATTGC+AGG | - | chr5_3:6118015-6118034 | Msa0794260:intron | 15.0% |
| !! | GCAAATTTAATATATACATA+TGG | + | chr5_3:6118373-6118392 | None:intergenic | 15.0% |
| !!! | ATATCATATTTTAGAAATAC+TGG | - | chr5_3:6118793-6118812 | Msa0794260:intron | 15.0% |
| !!! | ATTTTTATTACTTACGTTTC+AGG | + | chr5_3:6117710-6117729 | None:intergenic | 20.0% |
| !!! | TTACCGAAAAGTATTTAAAA+AGG | + | chr5_3:6117925-6117944 | None:intergenic | 20.0% |
| !! | TATTAACCAATTAGAACATA+TGG | + | chr5_3:6118395-6118414 | None:intergenic | 20.0% |
| !! | TATTAACCAATTATAACAGA+TGG | + | chr5_3:6118547-6118566 | None:intergenic | 20.0% |
| !!! | ATCATTTTGTTAGCTAAATT+AGG | - | chr5_3:6118629-6118648 | Msa0794260:intron | 20.0% |
| !!! | ATTTTTATTACTTACGTTTC+AGG | + | chr5_3:6117710-6117729 | None:intergenic | 20.0% |
| !!! | TTACCGAAAAGTATTTAAAA+AGG | + | chr5_3:6117925-6117944 | None:intergenic | 20.0% |
| !! | TATTAACCAATTAGAACATA+TGG | + | chr5_3:6118395-6118414 | None:intergenic | 20.0% |
| !! | TATTAACCAATTATAACAGA+TGG | + | chr5_3:6118547-6118566 | None:intergenic | 20.0% |
| !!! | ATCATTTTGTTAGCTAAATT+AGG | - | chr5_3:6118629-6118648 | Msa0794260:intron | 20.0% |
| ! | AAAAAACAAACAAAGTGAAG+AGG | - | chr5_3:6117569-6117588 | Msa0794260:CDS | 25.0% |
| ! | AACAAATCAAATTTGTAGGT+TGG | - | chr5_3:6117790-6117809 | Msa0794260:CDS | 25.0% |
| ! | AGTATCAGAACATATTAGAA+TGG | - | chr5_3:6117826-6117845 | Msa0794260:CDS | 25.0% |
| !! | GGACCTTTTTAAATACTTTT+CGG | - | chr5_3:6117919-6117938 | Msa0794260:CDS | 25.0% |
| ! | TTTATTGTATGATAAACGAC+AGG | - | chr5_3:6118118-6118137 | Msa0794260:intron | 25.0% |
| !!! | TTTTACCAAATTTCTAGCAT+GGG | + | chr5_3:6118324-6118343 | None:intergenic | 25.0% |
| !!! | TTTTTACCAAATTTCTAGCA+TGG | + | chr5_3:6118325-6118344 | None:intergenic | 25.0% |
| ! | AATTTGCCATATGTTCTAAT+TGG | - | chr5_3:6118386-6118405 | Msa0794260:intron | 25.0% |
| ! | TGTAAATTAGCGAAATAGAT+TGG | - | chr5_3:6118421-6118440 | Msa0794260:intron | 25.0% |
| ! | GTAAATTAGCGAAATAGATT+GGG | - | chr5_3:6118422-6118441 | Msa0794260:intron | 25.0% |
| ! | AATTTGCCATCTGTTATAAT+TGG | - | chr5_3:6118538-6118557 | Msa0794260:intron | 25.0% |
| ! | AAGCATCAAATAAAAACGAA+AGG | + | chr5_3:6118603-6118622 | None:intergenic | 25.0% |
| ! | AAGAATTGAAGAATGAGTTA+AGG | - | chr5_3:6119478-6119497 | Msa0794260:intron | 25.0% |
| ! | AGAATTGAAGAATGAGTTAA+GGG | - | chr5_3:6119479-6119498 | Msa0794260:intron | 25.0% |
| ! | AGGAAATGAGAAAATTCAAA+AGG | - | chr5_3:6119523-6119542 | Msa0794260:CDS | 25.0% |
| ! | AATGAGAAAATTCAAAAGGA+TGG | - | chr5_3:6119527-6119546 | Msa0794260:CDS | 25.0% |
| ! | AAAAAACAAACAAAGTGAAG+AGG | - | chr5_3:6117569-6117588 | Msa0794260:CDS | 25.0% |
| ! | AACAAATCAAATTTGTAGGT+TGG | - | chr5_3:6117790-6117809 | Msa0794260:CDS | 25.0% |
| ! | AGTATCAGAACATATTAGAA+TGG | - | chr5_3:6117826-6117845 | Msa0794260:CDS | 25.0% |
| !! | GGACCTTTTTAAATACTTTT+CGG | - | chr5_3:6117919-6117938 | Msa0794260:CDS | 25.0% |
| ! | TTTATTGTATGATAAACGAC+AGG | - | chr5_3:6118118-6118137 | Msa0794260:intron | 25.0% |
| !!! | TTTTACCAAATTTCTAGCAT+GGG | + | chr5_3:6118324-6118343 | None:intergenic | 25.0% |
| !!! | TTTTTACCAAATTTCTAGCA+TGG | + | chr5_3:6118325-6118344 | None:intergenic | 25.0% |
| ! | AATTTGCCATATGTTCTAAT+TGG | - | chr5_3:6118386-6118405 | Msa0794260:intron | 25.0% |
| ! | TGTAAATTAGCGAAATAGAT+TGG | - | chr5_3:6118421-6118440 | Msa0794260:intron | 25.0% |
| ! | GTAAATTAGCGAAATAGATT+GGG | - | chr5_3:6118422-6118441 | Msa0794260:intron | 25.0% |
| ! | AATTTGCCATCTGTTATAAT+TGG | - | chr5_3:6118538-6118557 | Msa0794260:intron | 25.0% |
| ! | AAGCATCAAATAAAAACGAA+AGG | + | chr5_3:6118603-6118622 | None:intergenic | 25.0% |
| ! | AAGAATTGAAGAATGAGTTA+AGG | - | chr5_3:6119478-6119497 | Msa0794260:intron | 25.0% |
| ! | AGAATTGAAGAATGAGTTAA+GGG | - | chr5_3:6119479-6119498 | Msa0794260:intron | 25.0% |
| ! | AGGAAATGAGAAAATTCAAA+AGG | - | chr5_3:6119523-6119542 | Msa0794260:CDS | 25.0% |
| ! | AATGAGAAAATTCAAAAGGA+TGG | - | chr5_3:6119527-6119546 | Msa0794260:CDS | 25.0% |
| GGTAGTAAGATCTGTATATA+TGG | + | chr5_3:6117888-6117907 | None:intergenic | 30.0% | |
| ! | TATTGCAGGATTTTTGTAGA+TGG | - | chr5_3:6118029-6118048 | Msa0794260:intron | 30.0% |
| ! | ATTGCAGGATTTTTGTAGAT+GGG | - | chr5_3:6118030-6118049 | Msa0794260:intron | 30.0% |
| TTGTAGAGAGAAACTTTCAT+AGG | - | chr5_3:6118072-6118091 | Msa0794260:intron | 30.0% | |
| TGTAGAGAGAAACTTTCATA+GGG | - | chr5_3:6118073-6118092 | Msa0794260:intron | 30.0% | |
| ACAGGAATTGAAAAAACGTA+AGG | - | chr5_3:6118136-6118155 | Msa0794260:intron | 30.0% | |
| CAGGAATTGAAAAAACGTAA+GGG | - | chr5_3:6118137-6118156 | Msa0794260:intron | 30.0% | |
| AATTATCGTACAGAATGGAT+CGG | - | chr5_3:6118161-6118180 | Msa0794260:intron | 30.0% | |
| !! | GAAGATCCACATTTTAAGAA+CGG | - | chr5_3:6118221-6118240 | Msa0794260:intron | 30.0% |
| !! | AAGATCCACATTTTAAGAAC+GGG | - | chr5_3:6118222-6118241 | Msa0794260:intron | 30.0% |
| ! | GTTTCTGAGAATATCTTAGA+AGG | - | chr5_3:6118669-6118688 | Msa0794260:CDS | 30.0% |
| ATCATAATTTCCAGCAATAC+AGG | + | chr5_3:6118697-6118716 | None:intergenic | 30.0% | |
| TGTATTGCTGGAAATTATGA+TGG | - | chr5_3:6118696-6118715 | Msa0794260:CDS | 30.0% | |
| ! | TTCTGTTATGTTCTTTTTGC+TGG | - | chr5_3:6118768-6118787 | Msa0794260:intron | 30.0% |
| !! | TTTTTCTGTTGCTGTTGTTT+TGG | - | chr5_3:6118898-6118917 | Msa0794260:CDS | 30.0% |
| !!! | TTTCTTAGGTTGGCTTTTTT+TGG | - | chr5_3:6118994-6119013 | Msa0794260:intron | 30.0% |
| GCTTAATATGTTAATGACAG+TGG | - | chr5_3:6119020-6119039 | Msa0794260:CDS | 30.0% | |
| ATATGTTAATGACAGTGGTT+AGG | - | chr5_3:6119025-6119044 | Msa0794260:CDS | 30.0% | |
| TATGTTAATGACAGTGGTTA+GGG | - | chr5_3:6119026-6119045 | Msa0794260:CDS | 30.0% | |
| !!! | TTTGTGGCTTTTTTCTGTTT+CGG | - | chr5_3:6119058-6119077 | Msa0794260:CDS | 30.0% |
| ! | AATTCAAGTTTAACGGTGAA+GGG | + | chr5_3:6119228-6119247 | None:intergenic | 30.0% |
| ! | TAATTCAAGTTTAACGGTGA+AGG | + | chr5_3:6119229-6119248 | None:intergenic | 30.0% |
| TCACCGTTAAACTTGAATTA+TGG | - | chr5_3:6119229-6119248 | Msa0794260:intron | 30.0% | |
| CACCGTTAAACTTGAATTAT+GGG | - | chr5_3:6119230-6119249 | Msa0794260:intron | 30.0% | |
| ! | TGCCCATAATTCAAGTTTAA+CGG | + | chr5_3:6119235-6119254 | None:intergenic | 30.0% |
| TAAACTTGAATTATGGGCAA+AGG | - | chr5_3:6119236-6119255 | Msa0794260:intron | 30.0% | |
| GGTAGTAAGATCTGTATATA+TGG | + | chr5_3:6117888-6117907 | None:intergenic | 30.0% | |
| ! | TATTGCAGGATTTTTGTAGA+TGG | - | chr5_3:6118029-6118048 | Msa0794260:intron | 30.0% |
| ! | ATTGCAGGATTTTTGTAGAT+GGG | - | chr5_3:6118030-6118049 | Msa0794260:intron | 30.0% |
| TTGTAGAGAGAAACTTTCAT+AGG | - | chr5_3:6118072-6118091 | Msa0794260:intron | 30.0% | |
| TGTAGAGAGAAACTTTCATA+GGG | - | chr5_3:6118073-6118092 | Msa0794260:intron | 30.0% | |
| ACAGGAATTGAAAAAACGTA+AGG | - | chr5_3:6118136-6118155 | Msa0794260:intron | 30.0% | |
| CAGGAATTGAAAAAACGTAA+GGG | - | chr5_3:6118137-6118156 | Msa0794260:intron | 30.0% | |
| AATTATCGTACAGAATGGAT+CGG | - | chr5_3:6118161-6118180 | Msa0794260:intron | 30.0% | |
| !! | GAAGATCCACATTTTAAGAA+CGG | - | chr5_3:6118221-6118240 | Msa0794260:intron | 30.0% |
| !! | AAGATCCACATTTTAAGAAC+GGG | - | chr5_3:6118222-6118241 | Msa0794260:intron | 30.0% |
| ! | GTTTCTGAGAATATCTTAGA+AGG | - | chr5_3:6118669-6118688 | Msa0794260:CDS | 30.0% |
| ATCATAATTTCCAGCAATAC+AGG | + | chr5_3:6118697-6118716 | None:intergenic | 30.0% | |
| TGTATTGCTGGAAATTATGA+TGG | - | chr5_3:6118696-6118715 | Msa0794260:CDS | 30.0% | |
| ! | TTCTGTTATGTTCTTTTTGC+TGG | - | chr5_3:6118768-6118787 | Msa0794260:intron | 30.0% |
| !! | TTTTTCTGTTGCTGTTGTTT+TGG | - | chr5_3:6118898-6118917 | Msa0794260:CDS | 30.0% |
| !!! | TTTCTTAGGTTGGCTTTTTT+TGG | - | chr5_3:6118994-6119013 | Msa0794260:intron | 30.0% |
| GCTTAATATGTTAATGACAG+TGG | - | chr5_3:6119020-6119039 | Msa0794260:CDS | 30.0% | |
| ATATGTTAATGACAGTGGTT+AGG | - | chr5_3:6119025-6119044 | Msa0794260:CDS | 30.0% | |
| TATGTTAATGACAGTGGTTA+GGG | - | chr5_3:6119026-6119045 | Msa0794260:CDS | 30.0% | |
| !!! | TTTGTGGCTTTTTTCTGTTT+CGG | - | chr5_3:6119058-6119077 | Msa0794260:CDS | 30.0% |
| ! | AATTCAAGTTTAACGGTGAA+GGG | + | chr5_3:6119228-6119247 | None:intergenic | 30.0% |
| ! | TAATTCAAGTTTAACGGTGA+AGG | + | chr5_3:6119229-6119248 | None:intergenic | 30.0% |
| TCACCGTTAAACTTGAATTA+TGG | - | chr5_3:6119229-6119248 | Msa0794260:intron | 30.0% | |
| CACCGTTAAACTTGAATTAT+GGG | - | chr5_3:6119230-6119249 | Msa0794260:intron | 30.0% | |
| ! | TGCCCATAATTCAAGTTTAA+CGG | + | chr5_3:6119235-6119254 | None:intergenic | 30.0% |
| TAAACTTGAATTATGGGCAA+AGG | - | chr5_3:6119236-6119255 | Msa0794260:intron | 30.0% | |
| ATGCAAGAACTTATGCAAAC+TGG | - | chr5_3:6117465-6117484 | Msa0794260:CDS | 35.0% | |
| ! | ATTACTTACGTTTCAGGTGT+TGG | + | chr5_3:6117704-6117723 | None:intergenic | 35.0% |
| AATATGTTCTGATACTCCGT+GGG | + | chr5_3:6117822-6117841 | None:intergenic | 35.0% | |
| TAATATGTTCTGATACTCCG+TGG | + | chr5_3:6117823-6117842 | None:intergenic | 35.0% | |
| !! | TATCTTTAGGGTAAAACGTC+TGG | + | chr5_3:6117856-6117875 | None:intergenic | 35.0% |
| TTTACCCTAAAGATAAGCGT+TGG | - | chr5_3:6117861-6117880 | Msa0794260:CDS | 35.0% | |
| TTACCCTAAAGATAAGCGTT+GGG | - | chr5_3:6117862-6117881 | Msa0794260:CDS | 35.0% | |
| AGGGTAATTATCGTACAGAA+TGG | - | chr5_3:6118156-6118175 | Msa0794260:intron | 35.0% | |
| ! | TCTGTTCATCTTGTTAGCTT+TGG | + | chr5_3:6118249-6118268 | None:intergenic | 35.0% |
| ! | ATGAACAGAGCATCTATTGT+AGG | - | chr5_3:6118260-6118279 | Msa0794260:intron | 35.0% |
| TCATGGATCTCTTTCAGATA+AGG | + | chr5_3:6118455-6118474 | None:intergenic | 35.0% | |
| CATTGTCAATTAGTGCTTGT+TGG | - | chr5_3:6118571-6118590 | Msa0794260:intron | 35.0% | |
| ACAGCAACAGAAAAACAGTT+GGG | + | chr5_3:6118893-6118912 | None:intergenic | 35.0% | |
| AACAGCAACAGAAAAACAGT+TGG | + | chr5_3:6118894-6118913 | None:intergenic | 35.0% | |
| TGTTAGCAGATTTCTTAGGT+TGG | - | chr5_3:6118984-6119003 | Msa0794260:intron | 35.0% | |
| !!! | GCTGCGTGTTTGTTTTTTTT+CGG | - | chr5_3:6119099-6119118 | Msa0794260:intron | 35.0% |
| ! | AAGGGAATTTCTGGATATGA+TGG | + | chr5_3:6119210-6119229 | None:intergenic | 35.0% |
| CCAAGACCATATATTATACC+CGG | + | chr5_3:6119300-6119319 | None:intergenic | 35.0% | |
| CGGGTATAATATATGGTCTT+GGG | - | chr5_3:6119298-6119317 | Msa0794260:intron | 35.0% | |
| AATGATACAACGAATGAACC+AGG | - | chr5_3:6119419-6119438 | Msa0794260:intron | 35.0% | |
| TCAAAAGGATGGCTACAAAA+AGG | - | chr5_3:6119538-6119557 | Msa0794260:CDS | 35.0% | |
| ATGCAAGAACTTATGCAAAC+TGG | - | chr5_3:6117465-6117484 | Msa0794260:CDS | 35.0% | |
| ! | ATTACTTACGTTTCAGGTGT+TGG | + | chr5_3:6117704-6117723 | None:intergenic | 35.0% |
| AATATGTTCTGATACTCCGT+GGG | + | chr5_3:6117822-6117841 | None:intergenic | 35.0% | |
| TAATATGTTCTGATACTCCG+TGG | + | chr5_3:6117823-6117842 | None:intergenic | 35.0% | |
| !! | TATCTTTAGGGTAAAACGTC+TGG | + | chr5_3:6117856-6117875 | None:intergenic | 35.0% |
| TTTACCCTAAAGATAAGCGT+TGG | - | chr5_3:6117861-6117880 | Msa0794260:CDS | 35.0% | |
| TTACCCTAAAGATAAGCGTT+GGG | - | chr5_3:6117862-6117881 | Msa0794260:CDS | 35.0% | |
| AGGGTAATTATCGTACAGAA+TGG | - | chr5_3:6118156-6118175 | Msa0794260:intron | 35.0% | |
| ! | TCTGTTCATCTTGTTAGCTT+TGG | + | chr5_3:6118249-6118268 | None:intergenic | 35.0% |
| ! | ATGAACAGAGCATCTATTGT+AGG | - | chr5_3:6118260-6118279 | Msa0794260:intron | 35.0% |
| TCATGGATCTCTTTCAGATA+AGG | + | chr5_3:6118455-6118474 | None:intergenic | 35.0% | |
| CATTGTCAATTAGTGCTTGT+TGG | - | chr5_3:6118571-6118590 | Msa0794260:intron | 35.0% | |
| ACAGCAACAGAAAAACAGTT+GGG | + | chr5_3:6118893-6118912 | None:intergenic | 35.0% | |
| AACAGCAACAGAAAAACAGT+TGG | + | chr5_3:6118894-6118913 | None:intergenic | 35.0% | |
| TGTTAGCAGATTTCTTAGGT+TGG | - | chr5_3:6118984-6119003 | Msa0794260:intron | 35.0% | |
| !!! | GCTGCGTGTTTGTTTTTTTT+CGG | - | chr5_3:6119099-6119118 | Msa0794260:intron | 35.0% |
| ! | AAGGGAATTTCTGGATATGA+TGG | + | chr5_3:6119210-6119229 | None:intergenic | 35.0% |
| CCAAGACCATATATTATACC+CGG | + | chr5_3:6119300-6119319 | None:intergenic | 35.0% | |
| CGGGTATAATATATGGTCTT+GGG | - | chr5_3:6119298-6119317 | Msa0794260:intron | 35.0% | |
| AATGATACAACGAATGAACC+AGG | - | chr5_3:6119419-6119438 | Msa0794260:intron | 35.0% | |
| TCAAAAGGATGGCTACAAAA+AGG | - | chr5_3:6119538-6119557 | Msa0794260:CDS | 35.0% | |
| ! | TGTTGTTGTTGTTGCTGTTG+TGG | + | chr5_3:6117525-6117544 | None:intergenic | 40.0% |
| ACGTCAGATCATTGAAGACT+GGG | - | chr5_3:6117649-6117668 | Msa0794260:CDS | 40.0% | |
| GTATGTGGATAACCTTGTTG+TGG | - | chr5_3:6117673-6117692 | Msa0794260:CDS | 40.0% | |
| AAAAAGGTCCTTCCTGTCAT+CGG | + | chr5_3:6117909-6117928 | None:intergenic | 40.0% | |
| ! | TCTCTACAAGAGTGTGATGA+TGG | + | chr5_3:6118061-6118080 | None:intergenic | 40.0% |
| AATGGATCGGAGAAAAAAGC+TGG | - | chr5_3:6118174-6118193 | Msa0794260:intron | 40.0% | |
| ATGGATCGGAGAAAAAAGCT+GGG | - | chr5_3:6118175-6118194 | Msa0794260:intron | 40.0% | |
| TTGGACCCGTTCTTAAAATG+TGG | + | chr5_3:6118230-6118249 | None:intergenic | 40.0% | |
| ! | AACAGAGCATCTATTGTAGG+AGG | - | chr5_3:6118263-6118282 | Msa0794260:intron | 40.0% |
| TGCTACCCATGCTAGAAATT+TGG | - | chr5_3:6118316-6118335 | Msa0794260:intron | 40.0% | |
| ACTCGTTTCAGTCAGAATCT+TGG | - | chr5_3:6118479-6118498 | Msa0794260:intron | 40.0% | |
| GTTTCAGTCAGAATCTTGGT+CGG | - | chr5_3:6118483-6118502 | Msa0794260:intron | 40.0% | |
| ! | GTCAATTAGTGCTTGTTGGT+TGG | - | chr5_3:6118575-6118594 | Msa0794260:intron | 40.0% |
| !! | TCGCGTTTTTGGAGGTTTTT+AGG | - | chr5_3:6118824-6118843 | Msa0794260:CDS | 40.0% |
| !!! | TGCTGTTGTTTTGGATCTGT+CGG | - | chr5_3:6118907-6118926 | Msa0794260:CDS | 40.0% |
| ! | CGGTTTGATTTCAAAGGCTT+TGG | - | chr5_3:6118945-6118964 | Msa0794260:CDS | 40.0% |
| CGTGTGTTAGCAGATTTCTT+AGG | - | chr5_3:6118980-6118999 | Msa0794260:intron | 40.0% | |
| !!! | GTTAGGGAGTGTTTCTTTTG+TGG | - | chr5_3:6119042-6119061 | Msa0794260:CDS | 40.0% |
| TTAACGGTGAAGGGAATTTC+TGG | + | chr5_3:6119219-6119238 | None:intergenic | 40.0% | |
| GGAAGACCGGGTATAATATA+TGG | - | chr5_3:6119291-6119310 | Msa0794260:intron | 40.0% | |
| CCGGGTATAATATATGGTCT+TGG | - | chr5_3:6119297-6119316 | Msa0794260:intron | 40.0% | |
| ATCATTGCTTGCATCTCAAG+AGG | + | chr5_3:6119405-6119424 | None:intergenic | 40.0% | |
| GAATGAGTTAAGGGAATTGC+TGG | - | chr5_3:6119488-6119507 | Msa0794260:CDS | 40.0% | |
| AAGGATGGCTACAAAAAGGA+TGG | - | chr5_3:6119542-6119561 | Msa0794260:CDS | 40.0% | |
| AGGATGGCTACAAAAAGGAT+GGG | - | chr5_3:6119543-6119562 | Msa0794260:CDS | 40.0% | |
| ! | TGTTGTTGTTGTTGCTGTTG+TGG | + | chr5_3:6117525-6117544 | None:intergenic | 40.0% |
| ACGTCAGATCATTGAAGACT+GGG | - | chr5_3:6117649-6117668 | Msa0794260:CDS | 40.0% | |
| GTATGTGGATAACCTTGTTG+TGG | - | chr5_3:6117673-6117692 | Msa0794260:CDS | 40.0% | |
| AAAAAGGTCCTTCCTGTCAT+CGG | + | chr5_3:6117909-6117928 | None:intergenic | 40.0% | |
| ! | TCTCTACAAGAGTGTGATGA+TGG | + | chr5_3:6118061-6118080 | None:intergenic | 40.0% |
| AATGGATCGGAGAAAAAAGC+TGG | - | chr5_3:6118174-6118193 | Msa0794260:intron | 40.0% | |
| ATGGATCGGAGAAAAAAGCT+GGG | - | chr5_3:6118175-6118194 | Msa0794260:intron | 40.0% | |
| TTGGACCCGTTCTTAAAATG+TGG | + | chr5_3:6118230-6118249 | None:intergenic | 40.0% | |
| ! | AACAGAGCATCTATTGTAGG+AGG | - | chr5_3:6118263-6118282 | Msa0794260:intron | 40.0% |
| TGCTACCCATGCTAGAAATT+TGG | - | chr5_3:6118316-6118335 | Msa0794260:intron | 40.0% | |
| ACTCGTTTCAGTCAGAATCT+TGG | - | chr5_3:6118479-6118498 | Msa0794260:intron | 40.0% | |
| GTTTCAGTCAGAATCTTGGT+CGG | - | chr5_3:6118483-6118502 | Msa0794260:intron | 40.0% | |
| ! | GTCAATTAGTGCTTGTTGGT+TGG | - | chr5_3:6118575-6118594 | Msa0794260:intron | 40.0% |
| !! | TCGCGTTTTTGGAGGTTTTT+AGG | - | chr5_3:6118824-6118843 | Msa0794260:CDS | 40.0% |
| !!! | TGCTGTTGTTTTGGATCTGT+CGG | - | chr5_3:6118907-6118926 | Msa0794260:CDS | 40.0% |
| ! | CGGTTTGATTTCAAAGGCTT+TGG | - | chr5_3:6118945-6118964 | Msa0794260:CDS | 40.0% |
| CGTGTGTTAGCAGATTTCTT+AGG | - | chr5_3:6118980-6118999 | Msa0794260:intron | 40.0% | |
| !!! | GTTAGGGAGTGTTTCTTTTG+TGG | - | chr5_3:6119042-6119061 | Msa0794260:CDS | 40.0% |
| TTAACGGTGAAGGGAATTTC+TGG | + | chr5_3:6119219-6119238 | None:intergenic | 40.0% | |
| GGAAGACCGGGTATAATATA+TGG | - | chr5_3:6119291-6119310 | Msa0794260:intron | 40.0% | |
| CCGGGTATAATATATGGTCT+TGG | - | chr5_3:6119297-6119316 | Msa0794260:intron | 40.0% | |
| ATCATTGCTTGCATCTCAAG+AGG | + | chr5_3:6119405-6119424 | None:intergenic | 40.0% | |
| GAATGAGTTAAGGGAATTGC+TGG | - | chr5_3:6119488-6119507 | Msa0794260:CDS | 40.0% | |
| AAGGATGGCTACAAAAAGGA+TGG | - | chr5_3:6119542-6119561 | Msa0794260:CDS | 40.0% | |
| AGGATGGCTACAAAAAGGAT+GGG | - | chr5_3:6119543-6119562 | Msa0794260:CDS | 40.0% | |
| ! | TAGCCTTACTTGCTGATCGA+CGG | - | chr5_3:6117496-6117515 | Msa0794260:CDS | 45.0% |
| ! | TGTTGTTGTTGCTGTTGTGG+AGG | + | chr5_3:6117522-6117541 | None:intergenic | 45.0% |
| TACCTCTTCACTTTGCCAGA+CGG | + | chr5_3:6117597-6117616 | None:intergenic | 45.0% | |
| !! | AAAGTGAAGAGGTACCGTCT+GGG | - | chr5_3:6117580-6117599 | Msa0794260:CDS | 45.0% |
| GACGTCAGATCATTGAAGAC+TGG | - | chr5_3:6117648-6117667 | Msa0794260:CDS | 45.0% | |
| ! | CATTGAAGACTGGGAGTATG+TGG | - | chr5_3:6117658-6117677 | Msa0794260:CDS | 45.0% |
| ! | GTGTTGGTGTAACCACAACA+AGG | + | chr5_3:6117688-6117707 | None:intergenic | 45.0% |
| TGGCCCAACGCTTATCTTTA+GGG | + | chr5_3:6117868-6117887 | None:intergenic | 45.0% | |
| ATGGCCCAACGCTTATCTTT+AGG | + | chr5_3:6117869-6117888 | None:intergenic | 45.0% | |
| CAGATCTTACTACCGATGAC+AGG | - | chr5_3:6117894-6117913 | Msa0794260:CDS | 45.0% | |
| TCTTACTACCGATGACAGGA+AGG | - | chr5_3:6117898-6117917 | Msa0794260:CDS | 45.0% | |
| !! | CTACAAGAGTGTGATGATGG+AGG | + | chr5_3:6118058-6118077 | None:intergenic | 45.0% |
| GGGAGTTGTTGCTGAAGTAT+TGG | - | chr5_3:6118195-6118214 | Msa0794260:intron | 45.0% | |
| GACTGAAACGAGTCTCTTCA+TGG | + | chr5_3:6118472-6118491 | None:intergenic | 45.0% | |
| TTAGAAGGAGCCTGTATTGC+TGG | - | chr5_3:6118684-6118703 | Msa0794260:CDS | 45.0% | |
| !! | TGGTTCTGTTCTCGCGTTTT+TGG | - | chr5_3:6118813-6118832 | Msa0794260:intron | 45.0% |
| !! | TTCTGTTCTCGCGTTTTTGG+AGG | - | chr5_3:6118816-6118835 | Msa0794260:intron | 45.0% |
| !!! | GCTGTTGTTTTGGATCTGTC+GGG | - | chr5_3:6118908-6118927 | Msa0794260:CDS | 45.0% |
| ! | GTTCGGCGGTTTGATTTCAA+AGG | - | chr5_3:6118939-6118958 | Msa0794260:CDS | 45.0% |
| ! | AAAGGCTTTGGCTGATAGTG+AGG | - | chr5_3:6118957-6118976 | Msa0794260:CDS | 45.0% |
| ! | CACGAATGCAGCGTAGTTTT+TGG | - | chr5_3:6119167-6119186 | Msa0794260:intron | 45.0% |
| !! | GAATGCAGCGTAGTTTTTGG+AGG | - | chr5_3:6119170-6119189 | Msa0794260:intron | 45.0% |
| CTTGAATTATGGGCAAAGGC+TGG | - | chr5_3:6119240-6119259 | Msa0794260:intron | 45.0% | |
| ATCTCCATGTACCACATTGC+CGG | + | chr5_3:6119331-6119350 | None:intergenic | 45.0% | |
| !! | CAACTCTCTAGAACGAGATG+AGG | + | chr5_3:6119382-6119401 | None:intergenic | 45.0% |
| !!! | CCTTTTGAGATTGCAACTCC+TGG | + | chr5_3:6119440-6119459 | None:intergenic | 45.0% |
| CCAGGAGTTGCAATCTCAAA+AGG | - | chr5_3:6119437-6119456 | Msa0794260:intron | 45.0% | |
| GGAGTTGCAATCTCAAAAGG+AGG | - | chr5_3:6119440-6119459 | Msa0794260:intron | 45.0% | |
| TCTCATTTCCTCTGCCTGTT+TGG | + | chr5_3:6119514-6119533 | None:intergenic | 45.0% | |
| ATGGCTACAAAAAGGATGGG+TGG | - | chr5_3:6119546-6119565 | Msa0794260:CDS | 45.0% | |
| GTTCGGTCTTCTTGAATCGA+CGG | + | chr5_3:6119624-6119643 | None:intergenic | 45.0% | |
| CATTGTCGTCGTCATGTGTT+CGG | + | chr5_3:6119641-6119660 | None:intergenic | 45.0% | |
| ! | TGACGACGACAATGATGATG+AGG | - | chr5_3:6119647-6119666 | Msa0794260:CDS | 45.0% |
| ! | TAGCCTTACTTGCTGATCGA+CGG | - | chr5_3:6117496-6117515 | Msa0794260:CDS | 45.0% |
| ! | TGTTGTTGTTGCTGTTGTGG+AGG | + | chr5_3:6117522-6117541 | None:intergenic | 45.0% |
| TACCTCTTCACTTTGCCAGA+CGG | + | chr5_3:6117597-6117616 | None:intergenic | 45.0% | |
| !! | AAAGTGAAGAGGTACCGTCT+GGG | - | chr5_3:6117580-6117599 | Msa0794260:CDS | 45.0% |
| GACGTCAGATCATTGAAGAC+TGG | - | chr5_3:6117648-6117667 | Msa0794260:CDS | 45.0% | |
| ! | CATTGAAGACTGGGAGTATG+TGG | - | chr5_3:6117658-6117677 | Msa0794260:CDS | 45.0% |
| ! | GTGTTGGTGTAACCACAACA+AGG | + | chr5_3:6117688-6117707 | None:intergenic | 45.0% |
| TGGCCCAACGCTTATCTTTA+GGG | + | chr5_3:6117868-6117887 | None:intergenic | 45.0% | |
| ATGGCCCAACGCTTATCTTT+AGG | + | chr5_3:6117869-6117888 | None:intergenic | 45.0% | |
| CAGATCTTACTACCGATGAC+AGG | - | chr5_3:6117894-6117913 | Msa0794260:CDS | 45.0% | |
| TCTTACTACCGATGACAGGA+AGG | - | chr5_3:6117898-6117917 | Msa0794260:CDS | 45.0% | |
| !! | CTACAAGAGTGTGATGATGG+AGG | + | chr5_3:6118058-6118077 | None:intergenic | 45.0% |
| GGGAGTTGTTGCTGAAGTAT+TGG | - | chr5_3:6118195-6118214 | Msa0794260:intron | 45.0% | |
| GACTGAAACGAGTCTCTTCA+TGG | + | chr5_3:6118472-6118491 | None:intergenic | 45.0% | |
| TTAGAAGGAGCCTGTATTGC+TGG | - | chr5_3:6118684-6118703 | Msa0794260:CDS | 45.0% | |
| !! | TGGTTCTGTTCTCGCGTTTT+TGG | - | chr5_3:6118813-6118832 | Msa0794260:intron | 45.0% |
| !! | TTCTGTTCTCGCGTTTTTGG+AGG | - | chr5_3:6118816-6118835 | Msa0794260:intron | 45.0% |
| !!! | GCTGTTGTTTTGGATCTGTC+GGG | - | chr5_3:6118908-6118927 | Msa0794260:CDS | 45.0% |
| ! | GTTCGGCGGTTTGATTTCAA+AGG | - | chr5_3:6118939-6118958 | Msa0794260:CDS | 45.0% |
| ! | AAAGGCTTTGGCTGATAGTG+AGG | - | chr5_3:6118957-6118976 | Msa0794260:CDS | 45.0% |
| ! | CACGAATGCAGCGTAGTTTT+TGG | - | chr5_3:6119167-6119186 | Msa0794260:intron | 45.0% |
| !! | GAATGCAGCGTAGTTTTTGG+AGG | - | chr5_3:6119170-6119189 | Msa0794260:intron | 45.0% |
| CTTGAATTATGGGCAAAGGC+TGG | - | chr5_3:6119240-6119259 | Msa0794260:intron | 45.0% | |
| ATCTCCATGTACCACATTGC+CGG | + | chr5_3:6119331-6119350 | None:intergenic | 45.0% | |
| !! | CAACTCTCTAGAACGAGATG+AGG | + | chr5_3:6119382-6119401 | None:intergenic | 45.0% |
| !!! | CCTTTTGAGATTGCAACTCC+TGG | + | chr5_3:6119440-6119459 | None:intergenic | 45.0% |
| CCAGGAGTTGCAATCTCAAA+AGG | - | chr5_3:6119437-6119456 | Msa0794260:intron | 45.0% | |
| GGAGTTGCAATCTCAAAAGG+AGG | - | chr5_3:6119440-6119459 | Msa0794260:intron | 45.0% | |
| TCTCATTTCCTCTGCCTGTT+TGG | + | chr5_3:6119514-6119533 | None:intergenic | 45.0% | |
| ATGGCTACAAAAAGGATGGG+TGG | - | chr5_3:6119546-6119565 | Msa0794260:CDS | 45.0% | |
| GTTCGGTCTTCTTGAATCGA+CGG | + | chr5_3:6119624-6119643 | None:intergenic | 45.0% | |
| CATTGTCGTCGTCATGTGTT+CGG | + | chr5_3:6119641-6119660 | None:intergenic | 45.0% | |
| ! | TGACGACGACAATGATGATG+AGG | - | chr5_3:6119647-6119666 | Msa0794260:CDS | 45.0% |
| GTCGATCAGCAAGTAAGGCT+AGG | + | chr5_3:6117497-6117516 | None:intergenic | 50.0% | |
| !! | CAAAGTGAAGAGGTACCGTC+TGG | - | chr5_3:6117579-6117598 | Msa0794260:CDS | 50.0% |
| TACCGTCTGGCAAAGTGAAG+AGG | - | chr5_3:6117592-6117611 | Msa0794260:CDS | 50.0% | |
| !! | CAAAGTGAAGAGGTACCGTC+TGG | - | chr5_3:6117579-6117598 | Msa0794260:CDS | 50.0% |
| CGTTGTTGATCACTCCCAGA+CGG | + | chr5_3:6117620-6117639 | None:intergenic | 50.0% | |
| TGTTCTGATACTCCGTGGGA+TGG | + | chr5_3:6117818-6117837 | None:intergenic | 50.0% | |
| TAGGTTTGCCCCAACCTGTT+AGG | - | chr5_3:6118843-6118862 | Msa0794260:CDS | 50.0% | |
| !! | TGTTAGGCACAGGGTGTTGT+GGG | - | chr5_3:6118859-6118878 | Msa0794260:CDS | 50.0% |
| !!! | GTTGTTTTGGATCTGTCGGG+TGG | - | chr5_3:6118911-6118930 | Msa0794260:CDS | 50.0% |
| TCTGTCGGGTGGTGTTTGTT+CGG | - | chr5_3:6118922-6118941 | Msa0794260:CDS | 50.0% | |
| TGGGCAAAGGCTGGAGAAAA+AGG | - | chr5_3:6119249-6119268 | Msa0794260:intron | 50.0% | |
| GGCTGGAGAAAAAGGAAGAC+CGG | - | chr5_3:6119257-6119276 | Msa0794260:intron | 50.0% | |
| GGAGAAAAAGGAAGACCGGA+TGG | - | chr5_3:6119261-6119280 | Msa0794260:intron | 50.0% | |
| GAAAAAGGAAGACCGGATGG+AGG | - | chr5_3:6119264-6119283 | Msa0794260:intron | 50.0% | |
| ! | GGTCTTCCTTTTCCTCCATC+CGG | + | chr5_3:6119279-6119298 | None:intergenic | 50.0% |
| GGATGGAGGAAAAGGAAGAC+CGG | - | chr5_3:6119278-6119297 | Msa0794260:intron | 50.0% | |
| GATGGAGGAAAAGGAAGACC+GGG | - | chr5_3:6119279-6119298 | Msa0794260:intron | 50.0% | |
| ! | TATGGTCTTGGGCCATTAGC+CGG | - | chr5_3:6119309-6119328 | Msa0794260:intron | 50.0% |
| ! | TGTACCACATTGCCGGCTAA+TGG | + | chr5_3:6119324-6119343 | None:intergenic | 50.0% |
| TTAGCCGGCAATGTGGTACA+TGG | - | chr5_3:6119324-6119343 | Msa0794260:intron | 50.0% | |
| CTAGAACGAGATGAGGACTC+TGG | + | chr5_3:6119375-6119394 | None:intergenic | 50.0% | |
| ! | GCAATCTCAAAAGGAGGCGT+TGG | - | chr5_3:6119446-6119465 | Msa0794260:intron | 50.0% |
| AAGGGAATTGCTGGCCAAAC+AGG | - | chr5_3:6119497-6119516 | Msa0794260:CDS | 50.0% | |
| !! | GACGGTGATGATTGACTCGA+TGG | + | chr5_3:6119606-6119625 | None:intergenic | 50.0% |
| ! | CGACAATGATGATGAGGACG+AGG | - | chr5_3:6119653-6119672 | Msa0794260:CDS | 50.0% |
| ! | ATGATGATGAGGACGAGGAG+AGG | - | chr5_3:6119658-6119677 | Msa0794260:CDS | 50.0% |
| ! | TGATGATGAGGACGAGGAGA+GGG | - | chr5_3:6119659-6119678 | Msa0794260:CDS | 50.0% |
| GTCGATCAGCAAGTAAGGCT+AGG | + | chr5_3:6117497-6117516 | None:intergenic | 50.0% | |
| !! | CAAAGTGAAGAGGTACCGTC+TGG | - | chr5_3:6117579-6117598 | Msa0794260:CDS | 50.0% |
| TACCGTCTGGCAAAGTGAAG+AGG | - | chr5_3:6117592-6117611 | Msa0794260:CDS | 50.0% | |
| !! | CAAAGTGAAGAGGTACCGTC+TGG | - | chr5_3:6117579-6117598 | Msa0794260:CDS | 50.0% |
| CGTTGTTGATCACTCCCAGA+CGG | + | chr5_3:6117620-6117639 | None:intergenic | 50.0% | |
| TGTTCTGATACTCCGTGGGA+TGG | + | chr5_3:6117818-6117837 | None:intergenic | 50.0% | |
| TAGGTTTGCCCCAACCTGTT+AGG | - | chr5_3:6118843-6118862 | Msa0794260:CDS | 50.0% | |
| !! | TGTTAGGCACAGGGTGTTGT+GGG | - | chr5_3:6118859-6118878 | Msa0794260:CDS | 50.0% |
| !!! | GTTGTTTTGGATCTGTCGGG+TGG | - | chr5_3:6118911-6118930 | Msa0794260:CDS | 50.0% |
| TCTGTCGGGTGGTGTTTGTT+CGG | - | chr5_3:6118922-6118941 | Msa0794260:CDS | 50.0% | |
| TGGGCAAAGGCTGGAGAAAA+AGG | - | chr5_3:6119249-6119268 | Msa0794260:intron | 50.0% | |
| GGCTGGAGAAAAAGGAAGAC+CGG | - | chr5_3:6119257-6119276 | Msa0794260:intron | 50.0% | |
| GGAGAAAAAGGAAGACCGGA+TGG | - | chr5_3:6119261-6119280 | Msa0794260:intron | 50.0% | |
| GAAAAAGGAAGACCGGATGG+AGG | - | chr5_3:6119264-6119283 | Msa0794260:intron | 50.0% | |
| ! | GGTCTTCCTTTTCCTCCATC+CGG | + | chr5_3:6119279-6119298 | None:intergenic | 50.0% |
| GGATGGAGGAAAAGGAAGAC+CGG | - | chr5_3:6119278-6119297 | Msa0794260:intron | 50.0% | |
| GATGGAGGAAAAGGAAGACC+GGG | - | chr5_3:6119279-6119298 | Msa0794260:intron | 50.0% | |
| ! | TATGGTCTTGGGCCATTAGC+CGG | - | chr5_3:6119309-6119328 | Msa0794260:intron | 50.0% |
| ! | TGTACCACATTGCCGGCTAA+TGG | + | chr5_3:6119324-6119343 | None:intergenic | 50.0% |
| TTAGCCGGCAATGTGGTACA+TGG | - | chr5_3:6119324-6119343 | Msa0794260:intron | 50.0% | |
| CTAGAACGAGATGAGGACTC+TGG | + | chr5_3:6119375-6119394 | None:intergenic | 50.0% | |
| ! | GCAATCTCAAAAGGAGGCGT+TGG | - | chr5_3:6119446-6119465 | Msa0794260:intron | 50.0% |
| AAGGGAATTGCTGGCCAAAC+AGG | - | chr5_3:6119497-6119516 | Msa0794260:CDS | 50.0% | |
| !! | GACGGTGATGATTGACTCGA+TGG | + | chr5_3:6119606-6119625 | None:intergenic | 50.0% |
| ! | CGACAATGATGATGAGGACG+AGG | - | chr5_3:6119653-6119672 | Msa0794260:CDS | 50.0% |
| ! | ATGATGATGAGGACGAGGAG+AGG | - | chr5_3:6119658-6119677 | Msa0794260:CDS | 50.0% |
| ! | TGATGATGAGGACGAGGAGA+GGG | - | chr5_3:6119659-6119678 | Msa0794260:CDS | 50.0% |
| AGGCCGTCGATCAGCAAGTA+AGG | + | chr5_3:6117502-6117521 | None:intergenic | 55.0% | |
| ! | TGTAGGTTGGAGCCATCCCA+CGG | - | chr5_3:6117803-6117822 | Msa0794260:CDS | 55.0% |
| ACCCTGTGCCTAACAGGTTG+GGG | + | chr5_3:6118854-6118873 | None:intergenic | 55.0% | |
| CACCCTGTGCCTAACAGGTT+GGG | + | chr5_3:6118855-6118874 | None:intergenic | 55.0% | |
| ACACCCTGTGCCTAACAGGT+TGG | + | chr5_3:6118856-6118875 | None:intergenic | 55.0% | |
| CACAACACCCTGTGCCTAAC+AGG | + | chr5_3:6118860-6118879 | None:intergenic | 55.0% | |
| !! | CTGTTAGGCACAGGGTGTTG+TGG | - | chr5_3:6118858-6118877 | Msa0794260:CDS | 55.0% |
| GGAAGACCGGATGGAGGAAA+AGG | - | chr5_3:6119270-6119289 | Msa0794260:intron | 55.0% | |
| GAACGAGATGAGGACTCTGG+TGG | + | chr5_3:6119372-6119391 | None:intergenic | 55.0% | |
| ATTGCTGGCCAAACAGGCAG+AGG | - | chr5_3:6119503-6119522 | Msa0794260:CDS | 55.0% | |
| GGATGGGTGGCATGAAGAGT+AGG | - | chr5_3:6119559-6119578 | Msa0794260:CDS | 55.0% | |
| AGGCCGTCGATCAGCAAGTA+AGG | + | chr5_3:6117502-6117521 | None:intergenic | 55.0% | |
| ! | TGTAGGTTGGAGCCATCCCA+CGG | - | chr5_3:6117803-6117822 | Msa0794260:CDS | 55.0% |
| ACCCTGTGCCTAACAGGTTG+GGG | + | chr5_3:6118854-6118873 | None:intergenic | 55.0% | |
| CACCCTGTGCCTAACAGGTT+GGG | + | chr5_3:6118855-6118874 | None:intergenic | 55.0% | |
| ACACCCTGTGCCTAACAGGT+TGG | + | chr5_3:6118856-6118875 | None:intergenic | 55.0% | |
| CACAACACCCTGTGCCTAAC+AGG | + | chr5_3:6118860-6118879 | None:intergenic | 55.0% | |
| !! | CTGTTAGGCACAGGGTGTTG+TGG | - | chr5_3:6118858-6118877 | Msa0794260:CDS | 55.0% |
| GGAAGACCGGATGGAGGAAA+AGG | - | chr5_3:6119270-6119289 | Msa0794260:intron | 55.0% | |
| GAACGAGATGAGGACTCTGG+TGG | + | chr5_3:6119372-6119391 | None:intergenic | 55.0% | |
| ATTGCTGGCCAAACAGGCAG+AGG | - | chr5_3:6119503-6119522 | Msa0794260:CDS | 55.0% | |
| GGATGGGTGGCATGAAGAGT+AGG | - | chr5_3:6119559-6119578 | Msa0794260:CDS | 55.0% | |
| GGAGGACAGTTGCACGCACA+AGG | - | chr5_3:6118281-6118300 | Msa0794260:intron | 60.0% | |
| TGCCCCAACCTGTTAGGCAC+AGG | - | chr5_3:6118849-6118868 | Msa0794260:CDS | 60.0% | |
| GCCCCAACCTGTTAGGCACA+GGG | - | chr5_3:6118850-6118869 | Msa0794260:CDS | 60.0% | |
| GTCGGGTGGTGTTTGTTCGG+CGG | - | chr5_3:6118925-6118944 | Msa0794260:CDS | 60.0% | |
| TGGGCCATTAGCCGGCAATG+TGG | - | chr5_3:6119317-6119336 | Msa0794260:intron | 60.0% | |
| GATGAGGACTCTGGTGGAGG+AGG | + | chr5_3:6119366-6119385 | None:intergenic | 60.0% | |
| CGAGATGAGGACTCTGGTGG+AGG | + | chr5_3:6119369-6119388 | None:intergenic | 60.0% | |
| GGAGGACAGTTGCACGCACA+AGG | - | chr5_3:6118281-6118300 | Msa0794260:intron | 60.0% | |
| TGCCCCAACCTGTTAGGCAC+AGG | - | chr5_3:6118849-6118868 | Msa0794260:CDS | 60.0% | |
| GCCCCAACCTGTTAGGCACA+GGG | - | chr5_3:6118850-6118869 | Msa0794260:CDS | 60.0% | |
| GTCGGGTGGTGTTTGTTCGG+CGG | - | chr5_3:6118925-6118944 | Msa0794260:CDS | 60.0% | |
| TGGGCCATTAGCCGGCAATG+TGG | - | chr5_3:6119317-6119336 | Msa0794260:intron | 60.0% | |
| GATGAGGACTCTGGTGGAGG+AGG | + | chr5_3:6119366-6119385 | None:intergenic | 60.0% | |
| CGAGATGAGGACTCTGGTGG+AGG | + | chr5_3:6119369-6119388 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 6117456 | 6119701 | 6117456 | ID=Msa0794260;Name=Msa0794260 |
| chr5_3 | mRNA | 6117456 | 6119701 | 6117456 | ID=Msa0794260-mRNA-1;Parent=Msa0794260;Name=Msa0794260-mRNA-1;_AED=0.25;_eAED=0.28;_QI=0|0|0|0.5|0.2|0.5|6|0|367 |
| chr5_3 | exon | 6119485 | 6119701 | 6119485 | ID=Msa0794260-mRNA-1:exon:2499;Parent=Msa0794260-mRNA-1 |
| chr5_3 | exon | 6118999 | 6119109 | 6118999 | ID=Msa0794260-mRNA-1:exon:2498;Parent=Msa0794260-mRNA-1 |
| chr5_3 | exon | 6118820 | 6118983 | 6118820 | ID=Msa0794260-mRNA-1:exon:2497;Parent=Msa0794260-mRNA-1 |
| chr5_3 | exon | 6118653 | 6118726 | 6118653 | ID=Msa0794260-mRNA-1:exon:2496;Parent=Msa0794260-mRNA-1 |
| chr5_3 | exon | 6117979 | 6117997 | 6117979 | ID=Msa0794260-mRNA-1:exon:2495;Parent=Msa0794260-mRNA-1 |
| chr5_3 | exon | 6117456 | 6117974 | 6117456 | ID=Msa0794260-mRNA-1:exon:2494;Parent=Msa0794260-mRNA-1 |
| chr5_3 | CDS | 6119485 | 6119701 | 6119485 | ID=Msa0794260-mRNA-1:cds;Parent=Msa0794260-mRNA-1 |
| chr5_3 | CDS | 6118999 | 6119109 | 6118999 | ID=Msa0794260-mRNA-1:cds;Parent=Msa0794260-mRNA-1 |
| chr5_3 | CDS | 6118820 | 6118983 | 6118820 | ID=Msa0794260-mRNA-1:cds;Parent=Msa0794260-mRNA-1 |
| chr5_3 | CDS | 6118653 | 6118726 | 6118653 | ID=Msa0794260-mRNA-1:cds;Parent=Msa0794260-mRNA-1 |
| chr5_3 | CDS | 6117979 | 6117997 | 6117979 | ID=Msa0794260-mRNA-1:cds;Parent=Msa0794260-mRNA-1 |
| chr5_3 | CDS | 6117456 | 6117974 | 6117456 | ID=Msa0794260-mRNA-1:cds;Parent=Msa0794260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
