Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752460 | XP_013453272.2 | 99.399 | 499 | 3 | 0 | 1 | 499 | 2 | 500 | 0.0 | 1032 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752460 | sp|O22446|HDA19_ARATH | 79.877 | 487 | 93 | 3 | 6 | 490 | 3 | 486 | 0.0 | 776 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752460 | A0A396HQV4 | 99.399 | 499 | 3 | 0 | 1 | 499 | 2 | 500 | 0.0 | 1032 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0752460 | Msa0836500 | 0.817303 | 3.536293e-52 | -8.615850e-47 |
| Msa0752460 | Msa1346740 | 0.826924 | 2.076756e-54 | -8.615850e-47 |
| Msa0343190 | Msa0752460 | 0.808466 | 3.055407e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752460 | MtrunA17_Chr5g0393401 | 99.399 | 499 | 3 | 0 | 1 | 499 | 2 | 500 | 0.0 | 1032 |
| Msa0752460 | MtrunA17_Chr3g0146071 | 79.065 | 492 | 95 | 5 | 7 | 495 | 4 | 490 | 0.0 | 773 |
| Msa0752460 | MtrunA17_Chr3g0117101 | 66.051 | 433 | 139 | 4 | 6 | 430 | 266 | 698 | 0.0 | 617 |
| Msa0752460 | MtrunA17_Chr3g0117101 | 63.492 | 189 | 63 | 3 | 6 | 189 | 11 | 198 | 2.67e-76 | 254 |
| Msa0752460 | MtrunA17_Chr4g0027021 | 60.349 | 401 | 157 | 2 | 19 | 418 | 4 | 403 | 0.0 | 517 |
| Msa0752460 | MtrunA17_Chr4g0061411 | 25.122 | 410 | 271 | 14 | 19 | 412 | 16 | 405 | 7.01e-26 | 111 |
| Msa0752460 | MtrunA17_Chr2g0321941 | 34.615 | 182 | 109 | 3 | 151 | 322 | 154 | 335 | 6.42e-25 | 106 |
| Msa0752460 | MtrunA17_Chr4g0062751 | 24.923 | 325 | 200 | 10 | 39 | 340 | 218 | 521 | 6.46e-21 | 96.3 |
| Msa0752460 | MtrunA17_Chr8g0384361 | 30.769 | 182 | 108 | 5 | 151 | 320 | 16 | 191 | 2.96e-19 | 87.0 |
| Msa0752460 | MtrunA17_Chr1g0151631 | 27.551 | 294 | 183 | 12 | 39 | 321 | 52 | 326 | 6.50e-19 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752460 | AT4G38130.1 | 79.877 | 487 | 93 | 3 | 6 | 490 | 3 | 486 | 0.0 | 776 |
| Msa0752460 | AT4G38130.2 | 81.799 | 467 | 82 | 2 | 6 | 470 | 3 | 468 | 0.0 | 766 |
| Msa0752460 | AT5G63110.1 | 66.828 | 413 | 135 | 1 | 2 | 412 | 1 | 413 | 0.0 | 597 |
| Msa0752460 | AT3G44680.1 | 57.346 | 422 | 168 | 3 | 19 | 428 | 4 | 425 | 0.0 | 518 |
| Msa0752460 | AT5G35600.1 | 54.878 | 410 | 175 | 3 | 11 | 414 | 1 | 406 | 1.03e-162 | 467 |
| Msa0752460 | AT3G44490.1 | 42.949 | 156 | 78 | 2 | 284 | 428 | 2 | 157 | 1.29e-39 | 141 |
| Msa0752460 | AT3G44660.1 | 37.821 | 156 | 70 | 3 | 284 | 428 | 2 | 141 | 1.66e-28 | 110 |
| Msa0752460 | AT5G61060.1 | 28.655 | 342 | 214 | 12 | 19 | 341 | 24 | 354 | 1.68e-27 | 117 |
| Msa0752460 | AT1G08460.1 | 27.914 | 326 | 199 | 8 | 16 | 322 | 18 | 326 | 9.39e-27 | 112 |
| Msa0752460 | AT5G61060.2 | 28.324 | 346 | 214 | 12 | 19 | 341 | 24 | 358 | 2.57e-26 | 113 |
| Msa0752460 | AT5G61070.1 | 24.426 | 479 | 317 | 14 | 2 | 458 | 36 | 491 | 9.80e-26 | 111 |
| Msa0752460 | AT1G08460.2 | 28.364 | 275 | 166 | 7 | 16 | 276 | 18 | 275 | 4.94e-23 | 100 |
| Msa0752460 | AT3G18520.4 | 29.339 | 242 | 161 | 5 | 151 | 382 | 276 | 517 | 5.22e-23 | 102 |
| Msa0752460 | AT3G18520.2 | 29.339 | 242 | 161 | 5 | 151 | 382 | 276 | 517 | 6.59e-23 | 102 |
| Msa0752460 | AT3G18520.1 | 29.167 | 240 | 160 | 5 | 151 | 380 | 276 | 515 | 9.75e-23 | 102 |
| Msa0752460 | AT3G18520.3 | 31.579 | 171 | 112 | 4 | 151 | 316 | 276 | 446 | 2.27e-18 | 88.2 |
| Msa0752460 | AT5G26040.2 | 24.601 | 313 | 208 | 9 | 21 | 322 | 73 | 368 | 7.19e-18 | 85.9 |
| Msa0752460 | AT4G33470.1 | 25.112 | 223 | 152 | 3 | 80 | 300 | 142 | 351 | 1.26e-17 | 85.5 |
Find 159 sgRNAs with CRISPR-Local
Find 452 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTGATCTTGCTGTGTTTC+AGG | 0.085056 | 5_2:+6108943 | None:intergenic |
| CAAGAACTCTCGCCCTTTAT+TGG | 0.114993 | 5_2:-6106505 | Msa0752460:CDS |
| ATCTAGGTCTCTTTCCTTTC+AGG | 0.118369 | 5_2:-6110315 | Msa0752460:intron |
| TGATATTGTGCTGGCTATTT+TGG | 0.123222 | 5_2:-6108722 | Msa0752460:CDS |
| TCCATCACCTTTCCCATTAA+TGG | 0.126989 | 5_2:+6107537 | None:intergenic |
| ACCTCTTGAAGCTCAGTATT+TGG | 0.175020 | 5_2:+6106405 | None:intergenic |
| TTCATTGTTTAAGCCATTAA+TGG | 0.195261 | 5_2:-6107550 | Msa0752460:CDS |
| ACTGTTTCATTTCATAAGTT+TGG | 0.196145 | 5_2:-6107681 | Msa0752460:CDS |
| GTAGCTCTTTGTTGGATCTT+TGG | 0.229516 | 5_2:-6104145 | Msa0752460:three_prime_UTR |
| ACATTCTATATAGTTGTTAT+AGG | 0.241137 | 5_2:-6109243 | Msa0752460:intron |
| GCTCTTATATCATCCAATAA+AGG | 0.253207 | 5_2:+6106492 | None:intergenic |
| CATGAGTACTATGAATATTT+TGG | 0.253682 | 5_2:-6106570 | Msa0752460:CDS |
| GACCCTATCAGTTGTGTAAA+AGG | 0.257449 | 5_2:+6107707 | None:intergenic |
| TAGCTCTTTGTTGGATCTTT+GGG | 0.260454 | 5_2:-6104144 | Msa0752460:three_prime_UTR |
| CTGTTTCATTTCATAAGTTT+GGG | 0.260711 | 5_2:-6107680 | Msa0752460:CDS |
| ACAGGAGATGTTCGTGATAT+TGG | 0.286311 | 5_2:-6107642 | Msa0752460:CDS |
| AAGTTTGGGGATTACTTTCC+TGG | 0.286928 | 5_2:-6107666 | Msa0752460:CDS |
| TCCTGCTCTTCTTTGATGAA+TGG | 0.294404 | 5_2:+6104488 | None:intergenic |
| GGTGAGAATGAGATAGAAAA+AGG | 0.309912 | 5_2:-6110400 | Msa0752460:five_prime_UTR |
| TGTCTTCAGGTGACAGGGTC+CGG | 0.312206 | 5_2:-6104536 | Msa0752460:intron |
| GAGGTTGGAAACTATTATTA+TGG | 0.332480 | 5_2:-6109132 | Msa0752460:CDS |
| AAGAGGAAACTATAATTTAC+AGG | 0.344689 | 5_2:+6104383 | None:intergenic |
| AAAATTGAGTAGCTCTTTGT+TGG | 0.350823 | 5_2:-6104153 | Msa0752460:three_prime_UTR |
| CTCTTATATCATCCAATAAA+GGG | 0.356806 | 5_2:+6106493 | None:intergenic |
| TCTGGAAAATGAAGGGATAT+AGG | 0.359220 | 5_2:-6104309 | Msa0752460:three_prime_UTR |
| TGTGGTGCTGACTCTTTATC+TGG | 0.360549 | 5_2:-6107483 | Msa0752460:CDS |
| CAGTATTTGGAGGTCTCTCT+TGG | 0.363054 | 5_2:+6106418 | None:intergenic |
| TTGTTGGATCTTTGGGATGA+AGG | 0.363362 | 5_2:-6104137 | Msa0752460:three_prime_UTR |
| TCATTGTTTAAGCCATTAAT+GGG | 0.371064 | 5_2:-6107549 | Msa0752460:CDS |
| AATATATATGCAAGTGAAGT+TGG | 0.372306 | 5_2:+6110479 | None:intergenic |
| TATGTGATATTGCAATAAAT+TGG | 0.375446 | 5_2:-6108801 | Msa0752460:CDS |
| CTGACTCTTTATCTGGAGAT+AGG | 0.378641 | 5_2:-6107476 | Msa0752460:CDS |
| TCACGAACATCTCCTGTTCC+AGG | 0.383235 | 5_2:+6107648 | None:intergenic |
| AGATATTGCTACACCTTTCA+AGG | 0.385430 | 5_2:-6104777 | Msa0752460:CDS |
| TCTGATCTTGCTGTGTTTCA+GGG | 0.386144 | 5_2:+6108944 | None:intergenic |
| GGGGATTACTTTCCTGGAAC+AGG | 0.387475 | 5_2:-6107660 | Msa0752460:CDS |
| GTCTTCAGGTGACAGGGTCC+GGG | 0.395128 | 5_2:-6104535 | Msa0752460:intron |
| TCTATATAGTTGTTATAGGT+TGG | 0.396633 | 5_2:-6109239 | Msa0752460:intron |
| CGAATTCTATGTGGTTTCAT+CGG | 0.406004 | 5_2:+6109099 | None:intergenic |
| CTGGAAAATGAAGGGATATA+GGG | 0.407963 | 5_2:-6104308 | Msa0752460:three_prime_UTR |
| TCTTTATCTGGAGATAGGTT+AGG | 0.408594 | 5_2:-6107471 | Msa0752460:CDS |
| AATGTTCCTCTTCTGTTGCT+CGG | 0.418112 | 5_2:-6107390 | Msa0752460:CDS |
| TAATAATAGTTTCCAACCTC+TGG | 0.420126 | 5_2:+6109135 | None:intergenic |
| AGGTTGGAAACTATTATTAT+GGG | 0.421047 | 5_2:-6109131 | Msa0752460:CDS |
| GGAGGGAACTCGCTTCCATC+AGG | 0.422027 | 5_2:-6109198 | Msa0752460:CDS |
| GGGCTGACCCGTGGATATTA+CGG | 0.422767 | 5_2:+6104432 | None:intergenic |
| GAAGACTGTCCCGTGTTTGA+TGG | 0.423471 | 5_2:-6108892 | Msa0752460:CDS |
| ATCAGACAGGTGTTGCTCTC+GGG | 0.428071 | 5_2:-6106620 | Msa0752460:intron |
| CTGAATGTTCCCTTGGATGA+TGG | 0.433256 | 5_2:-6107594 | Msa0752460:CDS |
| GATGTTCGTGATATTGGATA+TGG | 0.437390 | 5_2:-6107636 | Msa0752460:CDS |
| TTAAGCCGGATTACAACTAA+TGG | 0.438114 | 5_2:-6104245 | Msa0752460:three_prime_UTR |
| CTCTCTTGGAATGGAACACT+TGG | 0.438183 | 5_2:+6106432 | None:intergenic |
| AAGACGATAGAGATGAAAGA+TGG | 0.438774 | 5_2:-6105550 | Msa0752460:CDS |
| GAATTCTATGTGGTTTCATC+GGG | 0.439422 | 5_2:+6109100 | None:intergenic |
| TTGCTTCATCTGGAAAATGA+AGG | 0.442731 | 5_2:-6104317 | Msa0752460:three_prime_UTR |
| CACCGCCATTAGTTGTAATC+CGG | 0.446800 | 5_2:+6104240 | None:intergenic |
| TGGAAACTATTATTATGGGC+AGG | 0.455836 | 5_2:-6109127 | Msa0752460:CDS |
| TTATTCACTGAATGTTCCCT+TGG | 0.457739 | 5_2:-6107601 | Msa0752460:CDS |
| AACTTCTTGAGAATTTATCT+AGG | 0.465350 | 5_2:-6106467 | Msa0752460:CDS |
| GATCAGACAGGTGTTGCTCT+CGG | 0.468600 | 5_2:-6106621 | Msa0752460:intron |
| CGTGATATTGGATATGGTAA+AGG | 0.473946 | 5_2:-6107630 | Msa0752460:CDS |
| GAGAGAAGTTGCAAGGATCT+AGG | 0.475855 | 5_2:-6110331 | Msa0752460:five_prime_UTR |
| AGGGTCCGGGGTGGATTCAA+TGG | 0.478359 | 5_2:-6104522 | Msa0752460:CDS |
| GAATGACAGACAGCTGTAAG+AGG | 0.483030 | 5_2:+6104366 | None:intergenic |
| ATCCGGCTTAATATTACAGT+TGG | 0.483738 | 5_2:+6104257 | None:intergenic |
| GCAACGTGAAGAGCATAGTC+TGG | 0.485333 | 5_2:+6106546 | None:intergenic |
| TGTTTCAATCTTTCGATCAA+AGG | 0.489442 | 5_2:-6107447 | Msa0752460:CDS |
| AACCTACTGCCGCTAAAGAC+AGG | 0.489469 | 5_2:-6109020 | Msa0752460:CDS |
| ATATATATGCAAGTGAAGTT+GGG | 0.493023 | 5_2:+6110480 | None:intergenic |
| AGTTGTTATAGGTTGGATGA+TGG | 0.493242 | 5_2:-6109232 | Msa0752460:exon |
| CAGCAATTCTCTTGCACGAA+GGG | 0.494692 | 5_2:-6105429 | Msa0752460:CDS |
| CTTCTGTTGCTCGGTGGAGG+TGG | 0.497564 | 5_2:-6107381 | Msa0752460:CDS |
| ATTGCATGTCTTCAGGTGAC+AGG | 0.499344 | 5_2:-6104542 | Msa0752460:intron |
| CCTCTTCTGTTGCTCGGTGG+AGG | 0.504569 | 5_2:-6107384 | Msa0752460:CDS |
| TATTTCTACGATCCAGAGGT+TGG | 0.504725 | 5_2:-6109147 | Msa0752460:CDS |
| TTCTATGTGGTTTCATCGGG+TGG | 0.507556 | 5_2:+6109103 | None:intergenic |
| GTGGATTCAATGGCTGTGGA+TGG | 0.507834 | 5_2:-6104512 | Msa0752460:CDS |
| TTAATGGCTTAAACAATGAA+TGG | 0.508026 | 5_2:+6107553 | None:intergenic |
| TTGCAATATCACATATTCCA+TGG | 0.509410 | 5_2:+6108809 | None:intergenic |
| CGGGGTGGATTCAATGGCTG+TGG | 0.513588 | 5_2:-6104516 | Msa0752460:CDS |
| ACCATTCATCAAAGAAGAGC+AGG | 0.519230 | 5_2:-6104489 | Msa0752460:CDS |
| GTTTAAGCCATTAATGGGAA+AGG | 0.520381 | 5_2:-6107544 | Msa0752460:CDS |
| TTCCAACTGTAATATTAAGC+CGG | 0.521115 | 5_2:-6104259 | Msa0752460:three_prime_UTR |
| ATCAGATTAGACAGTTGAAG+AGG | 0.521631 | 5_2:-6108927 | Msa0752460:CDS |
| CTATGTAAATGATATTGTGC+TGG | 0.523209 | 5_2:-6108731 | Msa0752460:CDS |
| TCTTGAAGCTCAGTATTTGG+AGG | 0.524092 | 5_2:+6106408 | None:intergenic |
| TTTGGAGGTCTCTCTTGGAA+TGG | 0.524293 | 5_2:+6106423 | None:intergenic |
| GCCATTAATGGGAAAGGTGA+TGG | 0.528632 | 5_2:-6107538 | Msa0752460:CDS |
| TGCTTCATCTGGAAAATGAA+GGG | 0.533110 | 5_2:-6104316 | Msa0752460:three_prime_UTR |
| CAACAGAAGAGGAACATTGA+AGG | 0.536582 | 5_2:+6107395 | None:intergenic |
| GCAGAGGTCCCTGTCTTTAG+CGG | 0.541800 | 5_2:+6109011 | None:intergenic |
| ATCATCAATTCCATCATCCA+AGG | 0.546064 | 5_2:+6107584 | None:intergenic |
| TGGATGATGGAAAGTGTTAG+TGG | 0.549604 | 5_2:-6109219 | Msa0752460:CDS |
| GATATTGCAATAAATTGGTC+TGG | 0.559446 | 5_2:-6108796 | Msa0752460:CDS |
| ATCGATATCCACCATGGTGA+TGG | 0.560349 | 5_2:-6107741 | Msa0752460:CDS |
| TCCAAATACTGAGCTTCAAG+AGG | 0.563357 | 5_2:-6106406 | Msa0752460:intron |
| AGACGATAGAGATGAAAGAT+GGG | 0.565109 | 5_2:-6105549 | Msa0752460:CDS |
| GAGCATGCAATCTCCTTGAA+AGG | 0.568668 | 5_2:+6104764 | None:intergenic |
| GGCACGGTGTTGGTGTTATG+AGG | 0.568968 | 5_2:-6107340 | Msa0752460:intron |
| TCTTCAGGTGACAGGGTCCG+GGG | 0.569453 | 5_2:-6104534 | Msa0752460:intron |
| GGAAACTATTATTATGGGCA+GGG | 0.569643 | 5_2:-6109126 | Msa0752460:CDS |
| TCGACAGACACTAGTTGTCT+AGG | 0.570025 | 5_2:+6104406 | None:intergenic |
| CTGATCTTGCTGTGTTTCAG+GGG | 0.570950 | 5_2:+6108945 | None:intergenic |
| CCACCATGGTGATGGTGTAG+AGG | 0.571069 | 5_2:-6107733 | Msa0752460:CDS |
| AAATAGCTTTGCATCTGCAC+GGG | 0.572340 | 5_2:-6103985 | Msa0752460:three_prime_UTR |
| CAAGGAGATTGCATGCTCCA+AGG | 0.575055 | 5_2:-6104759 | Msa0752460:intron |
| CAGTTGAAGAGGTTTAATGT+TGG | 0.575078 | 5_2:-6108916 | Msa0752460:CDS |
| TCGCTTCCATCAGGGTCAGA+TGG | 0.576184 | 5_2:-6109189 | Msa0752460:CDS |
| CATTGCAATACCACAGCACC+AGG | 0.578846 | 5_2:+6107504 | None:intergenic |
| AAAATAGCTTTGCATCTGCA+CGG | 0.583167 | 5_2:-6103986 | Msa0752460:three_prime_UTR |
| TTCATATTTCTACGATCCAG+AGG | 0.584629 | 5_2:-6109151 | Msa0752460:CDS |
| AGACACTAGTTGTCTAGGTG+GGG | 0.585743 | 5_2:+6104411 | None:intergenic |
| TTCACACCATCTGACCCTGA+TGG | 0.587776 | 5_2:+6109183 | None:intergenic |
| CCTCCACCGAGCAACAGAAG+AGG | 0.588820 | 5_2:+6107384 | None:intergenic |
| ACCTACTGCCGCTAAAGACA+GGG | 0.592614 | 5_2:-6109019 | Msa0752460:CDS |
| CAGACACTAGTTGTCTAGGT+GGG | 0.595921 | 5_2:+6104410 | None:intergenic |
| GTGTTGAAGCAACCCATAGT+GGG | 0.598870 | 5_2:+6109056 | None:intergenic |
| AGATGAAGCCGTAATATCCA+CGG | 0.598878 | 5_2:-6104440 | Msa0752460:exon |
| CCATGGTGATGGTGTAGAGG+AGG | 0.600370 | 5_2:-6107730 | Msa0752460:CDS |
| TGGGTTGCTTCAACACATGC+AGG | 0.603210 | 5_2:-6109049 | Msa0752460:CDS |
| TAAGAAATGTGGCACGGTGT+TGG | 0.603976 | 5_2:-6107350 | Msa0752460:CDS |
| TTGCATGTCTTCAGGTGACA+GGG | 0.605970 | 5_2:-6104541 | Msa0752460:intron |
| TGGGCAGCGTGTTCTATATG+TGG | 0.608158 | 5_2:-6107766 | Msa0752460:intron |
| TGTGTCATTCGAATTCTATG+TGG | 0.608842 | 5_2:+6109090 | None:intergenic |
| GACACTAGTTGTCTAGGTGG+GGG | 0.612371 | 5_2:+6104412 | None:intergenic |
| TGGCTATACAATAAGAAATG+TGG | 0.613448 | 5_2:-6107361 | Msa0752460:CDS |
| TCAGGTGACAGGGTCCGGGG+TGG | 0.613743 | 5_2:-6104531 | Msa0752460:intron |
| GTTCCATGCTGATGACTATG+TGG | 0.614668 | 5_2:-6108986 | Msa0752460:CDS |
| TCACGTTGCTCCTAGTAACA+TGG | 0.615242 | 5_2:-6106532 | Msa0752460:CDS |
| GTTCCTCTTCTGTTGCTCGG+TGG | 0.616750 | 5_2:-6107387 | Msa0752460:CDS |
| ATAATTAGTAGCAAATAGAG+TGG | 0.617100 | 5_2:+6104033 | None:intergenic |
| GATGAAGCCGTAATATCCAC+GGG | 0.622039 | 5_2:-6104439 | Msa0752460:exon |
| GAGGGAACTCGCTTCCATCA+GGG | 0.622070 | 5_2:-6109197 | Msa0752460:CDS |
| TCCCTGTCTTTAGCGGCAGT+AGG | 0.628266 | 5_2:+6109018 | None:intergenic |
| TGATGGAAAGTGTTAGTGGA+GGG | 0.630916 | 5_2:-6109215 | Msa0752460:CDS |
| TAATTAGTAGCAAATAGAGT+GGG | 0.633209 | 5_2:+6104034 | None:intergenic |
| ATTGCAATAAATTGGTCTGG+TGG | 0.637116 | 5_2:-6108793 | Msa0752460:CDS |
| AAGCCACATAGTCATCAGCA+TGG | 0.640266 | 5_2:+6108983 | None:intergenic |
| TCATCAATTCCATCATCCAA+GGG | 0.643226 | 5_2:+6107585 | None:intergenic |
| AGAGTAAAGACCATCAAACA+CGG | 0.645425 | 5_2:+6108882 | None:intergenic |
| TGTTTCATTTCATAAGTTTG+GGG | 0.649344 | 5_2:-6107679 | Msa0752460:CDS |
| TGTGTTGAAGCAACCCATAG+TGG | 0.649660 | 5_2:+6109055 | None:intergenic |
| ACAGCAATTCTCTTGCACGA+AGG | 0.651780 | 5_2:-6105430 | Msa0752460:intron |
| TATTCATAGTACTCATGCTG+AGG | 0.653964 | 5_2:+6106576 | None:intergenic |
| CATCAGCATGGAACTTGCAG+AGG | 0.658951 | 5_2:+6108995 | None:intergenic |
| AGCCGGATTACAACTAATGG+CGG | 0.663888 | 5_2:-6104242 | Msa0752460:three_prime_UTR |
| ATTAATGGGAAAGGTGATGG+AGG | 0.665076 | 5_2:-6107535 | Msa0752460:CDS |
| CACAGCCATTGAATCCACCC+CGG | 0.674248 | 5_2:+6104517 | None:intergenic |
| CCTCTACACCATCACCATGG+TGG | 0.674261 | 5_2:+6107733 | None:intergenic |
| GAGTAAAGACCATCAAACAC+GGG | 0.681916 | 5_2:+6108883 | None:intergenic |
| ACAGACACTAGTTGTCTAGG+TGG | 0.683991 | 5_2:+6104409 | None:intergenic |
| TGAAGCTGAGCATAAAGACA+TGG | 0.685361 | 5_2:-6105390 | Msa0752460:intron |
| ATACAATAAGAAATGTGGCA+CGG | 0.692820 | 5_2:-6107356 | Msa0752460:CDS |
| GGTGCTGTGGTATTGCAATG+TGG | 0.701873 | 5_2:-6107501 | Msa0752460:CDS |
| CCTCCTCTACACCATCACCA+TGG | 0.705263 | 5_2:+6107730 | None:intergenic |
| GGAACTTCTCAAGATACACG+AGG | 0.706793 | 5_2:-6108701 | Msa0752460:intron |
| GGTGCTCTTAAATTGAACCA+TGG | 0.713674 | 5_2:-6108826 | Msa0752460:CDS |
| ATGATGGAAAGTGTTAGTGG+AGG | 0.723350 | 5_2:-6109216 | Msa0752460:CDS |
| GTGGACATCGATATCCACCA+TGG | 0.732038 | 5_2:-6107747 | Msa0752460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTTACTATCAAAATAA+AGG | + | chr5_2:6104751-6104770 | None:intergenic | 10.0% |
| !!! | TAATTAATACATATTTTAAG+AGG | - | chr5_2:6106110-6106129 | Msa0752460:intron | 10.0% |
| !!! | ATATTTTAATATAAAACATC+GGG | + | chr5_2:6106643-6106662 | None:intergenic | 10.0% |
| !!! | ATTATTTGGTTTATTTATTT+TGG | - | chr5_2:6109502-6109521 | Msa0752460:intron | 10.0% |
| !!! | TTATTTGGTTTATTTATTTT+GGG | - | chr5_2:6109503-6109522 | Msa0752460:intron | 10.0% |
| !!! | ATATATTTTAATATACATCC+AGG | - | chr5_2:6104625-6104644 | Msa0752460:intron | 15.0% |
| !! | AATTGATTGAATATCATTTA+TGG | - | chr5_2:6108375-6108394 | Msa0752460:intron | 15.0% |
| !!! | TTTATTTTCATAGTTAGTTT+TGG | - | chr5_2:6108800-6108819 | Msa0752460:CDS | 15.0% |
| !! | TTATTTATCTTGATTAAGTT+GGG | + | chr5_2:6109477-6109496 | None:intergenic | 15.0% |
| !! | TTTATTTATCTTGATTAAGT+TGG | + | chr5_2:6109478-6109497 | None:intergenic | 15.0% |
| !! | ACTTAATCAAGATAAATAAA+TGG | - | chr5_2:6109478-6109497 | Msa0752460:intron | 15.0% |
| !!! | TTAGTTTTTTTTTTTTTGTC+AGG | + | chr5_2:6109867-6109886 | None:intergenic | 15.0% |
| !! | ACATTTAACATAGAAAATCT+CGG | + | chr5_2:6104194-6104213 | None:intergenic | 20.0% |
| !!! | AAGTTGCTTTATAAATGAAA+TGG | + | chr5_2:6104581-6104600 | None:intergenic | 20.0% |
| !! | TTTACTATCAAAATAAAGGA+TGG | + | chr5_2:6104747-6104766 | None:intergenic | 20.0% |
| !!! | CTTTTATAATTGACAAATTG+AGG | + | chr5_2:6104984-6105003 | None:intergenic | 20.0% |
| !! | CTCAATTTGTCAATTATAAA+AGG | - | chr5_2:6104982-6105001 | Msa0752460:intron | 20.0% |
| !! | ACATTCTATATAGTTGTTAT+AGG | - | chr5_2:6105229-6105248 | Msa0752460:intron | 20.0% |
| !! | TATGTGATATTGCAATAAAT+TGG | - | chr5_2:6105671-6105690 | Msa0752460:intron | 20.0% |
| !!! | AATTTGTAATCCATTTTTAG+AGG | - | chr5_2:6105928-6105947 | Msa0752460:intron | 20.0% |
| !!! | CGTAAAATTAAACCAATTTT+GGG | - | chr5_2:6106133-6106152 | Msa0752460:intron | 20.0% |
| !!! | GTAAAATTAAACCAATTTTG+GGG | - | chr5_2:6106134-6106153 | Msa0752460:intron | 20.0% |
| !! | TAAAATGTTGACATAAAAGT+AGG | + | chr5_2:6106425-6106444 | None:intergenic | 20.0% |
| !! | AAATTTACCAACAATAAACT+AGG | + | chr5_2:6107180-6107199 | None:intergenic | 20.0% |
| !! | TTACTACAATTACTATTACT+TGG | + | chr5_2:6107551-6107570 | None:intergenic | 20.0% |
| !! | AGTAATAGTAATTGTAGTAA+TGG | - | chr5_2:6107551-6107570 | Msa0752460:CDS | 20.0% |
| !! | ACATAGCAATAAATTACAAA+TGG | - | chr5_2:6107641-6107660 | Msa0752460:CDS | 20.0% |
| !!! | ATGCAGTATTCTATTTTTTA+AGG | - | chr5_2:6107794-6107813 | Msa0752460:intron | 20.0% |
| !!! | GAATATATATTTTTCGTCAA+TGG | - | chr5_2:6108418-6108437 | Msa0752460:intron | 20.0% |
| !! | TGGTAAAATGAAAATCTTAT+AGG | - | chr5_2:6108438-6108457 | Msa0752460:intron | 20.0% |
| !! | ATGAAAATAAAAACAGAGTA+TGG | + | chr5_2:6108791-6108810 | None:intergenic | 20.0% |
| !! | AATTATTGAACTGAATGAAT+AGG | - | chr5_2:6108837-6108856 | Msa0752460:CDS | 20.0% |
| !!! | TATTTATCTTGATTAAGTTG+GGG | + | chr5_2:6109476-6109495 | None:intergenic | 20.0% |
| !! | GATAAATAAATGGCATTATT+TGG | - | chr5_2:6109488-6109507 | Msa0752460:intron | 20.0% |
| !! | CATTTAGTAAAATACAGATA+AGG | + | chr5_2:6109556-6109575 | None:intergenic | 20.0% |
| !!! | ATCTGTATTTTACTAAATGA+TGG | - | chr5_2:6109557-6109576 | Msa0752460:intron | 20.0% |
| !! | TCCGTTAATAAACTATAATT+TGG | - | chr5_2:6109746-6109765 | Msa0752460:intron | 20.0% |
| !! | GCCAAATTATAGTTTATTAA+CGG | + | chr5_2:6109750-6109769 | None:intergenic | 20.0% |
| !! | TTAATAAACTATAATTTGGC+AGG | - | chr5_2:6109750-6109769 | Msa0752460:intron | 20.0% |
| !! | TAATAAACTATAATTTGGCA+GGG | - | chr5_2:6109751-6109770 | Msa0752460:intron | 20.0% |
| !! | AAACCATACCTAAAAAAAAA+CGG | + | chr5_2:6110270-6110289 | None:intergenic | 20.0% |
| ! | ATATATATGCAAGTGAAGTT+GGG | + | chr5_2:6103995-6104014 | None:intergenic | 25.0% |
| ! | AATATATATGCAAGTGAAGT+TGG | + | chr5_2:6103996-6104015 | None:intergenic | 25.0% |
| ! | AAGTAATGAATGATATAGAG+CGG | + | chr5_2:6104316-6104335 | None:intergenic | 25.0% |
| !! | ACTTACTTACTTATTTGTTG+AGG | - | chr5_2:6104336-6104355 | Msa0752460:three_prime_UTR | 25.0% |
| !!! | AACATTTTATTGTTGTTGTC+AGG | + | chr5_2:6104461-6104480 | None:intergenic | 25.0% |
| ! | GGATAAACTAAACTACTTTA+GGG | + | chr5_2:6104539-6104558 | None:intergenic | 25.0% |
| ! | AGGATAAACTAAACTACTTT+AGG | + | chr5_2:6104540-6104559 | None:intergenic | 25.0% |
| !!! | AATAAAGGATGGTTTTGATT+TGG | + | chr5_2:6104736-6104755 | None:intergenic | 25.0% |
| ! | ATTCTACTATAGTAGTTCAA+CGG | - | chr5_2:6104899-6104918 | Msa0752460:intron | 25.0% |
| ! | TGTCAATTATAAAAGGCTAT+AGG | - | chr5_2:6104989-6105008 | Msa0752460:intron | 25.0% |
| !! | TGTTTTGTATTCAATTATGC+TGG | - | chr5_2:6105012-6105031 | Msa0752460:intron | 25.0% |
| ! | TTACGAAGAATATAAGACAA+CGG | + | chr5_2:6105100-6105119 | None:intergenic | 25.0% |
| ! | TCTATATAGTTGTTATAGGT+TGG | - | chr5_2:6105233-6105252 | Msa0752460:intron | 25.0% |
| ! | AGGTTGGAAACTATTATTAT+GGG | - | chr5_2:6105341-6105360 | Msa0752460:intron | 25.0% |
| ! | ATAAATCAACAAGATAATGC+AGG | + | chr5_2:6105814-6105833 | None:intergenic | 25.0% |
| !!! | TGCATTATCTTGTTGATTTA+TGG | - | chr5_2:6105813-6105832 | Msa0752460:intron | 25.0% |
| !! | ACAAATTACTGATGATGAAA+AGG | + | chr5_2:6105915-6105934 | None:intergenic | 25.0% |
| !! | TAAAGGTAAACCTCTAAAAA+TGG | + | chr5_2:6105941-6105960 | None:intergenic | 25.0% |
| ! | AAAGCAAAGAAAATCAGTAA+AGG | + | chr5_2:6105958-6105977 | None:intergenic | 25.0% |
| !! | GCGTAAAATTAAACCAATTT+TGG | - | chr5_2:6106132-6106151 | Msa0752460:intron | 25.0% |
| !! | CTCAGATATAAGTTGAAAAT+AGG | + | chr5_2:6106261-6106280 | None:intergenic | 25.0% |
| ! | AGTTTCCTTCAAAGATATAA+GGG | + | chr5_2:6106494-6106513 | None:intergenic | 25.0% |
| ! | AAGTTTCCTTCAAAGATATA+AGG | + | chr5_2:6106495-6106514 | None:intergenic | 25.0% |
| ! | GTAATCCAAATTTCAATCAA+AGG | + | chr5_2:6106677-6106696 | None:intergenic | 25.0% |
| ! | ACTGTTTCATTTCATAAGTT+TGG | - | chr5_2:6106791-6106810 | Msa0752460:intron | 25.0% |
| ! | CTGTTTCATTTCATAAGTTT+GGG | - | chr5_2:6106792-6106811 | Msa0752460:intron | 25.0% |
| ! | TGTTTCATTTCATAAGTTTG+GGG | - | chr5_2:6106793-6106812 | Msa0752460:intron | 25.0% |
| ! | TTAATGGCTTAAACAATGAA+TGG | + | chr5_2:6106922-6106941 | None:intergenic | 25.0% |
| ! | TTCATTGTTTAAGCCATTAA+TGG | - | chr5_2:6106922-6106941 | Msa0752460:intron | 25.0% |
| ! | TCATTGTTTAAGCCATTAAT+GGG | - | chr5_2:6106923-6106942 | Msa0752460:intron | 25.0% |
| ! | TTATAAAACCAATGATTTCC+AGG | + | chr5_2:6107257-6107276 | None:intergenic | 25.0% |
| !!! | ATTGGTTTTATAACCAATAG+AGG | - | chr5_2:6107264-6107283 | Msa0752460:intron | 25.0% |
| ! | CATGACTGTATGTAAATTAT+AGG | + | chr5_2:6107508-6107527 | None:intergenic | 25.0% |
| ! | CTATAATTTACATACAGTCA+TGG | - | chr5_2:6107506-6107525 | Msa0752460:CDS | 25.0% |
| !!! | CTTTGCTGTTTTTTTCAATA+AGG | + | chr5_2:6107619-6107638 | None:intergenic | 25.0% |
| !!! | CAGTATTCTATTTTTTAAGG+AGG | - | chr5_2:6107797-6107816 | Msa0752460:intron | 25.0% |
| !! | CATGAGTACTATGAATATTT+TGG | - | chr5_2:6107902-6107921 | Msa0752460:intron | 25.0% |
| ! | CTCTTATATCATCCAATAAA+GGG | + | chr5_2:6107982-6108001 | None:intergenic | 25.0% |
| ! | AACTTCTTGAGAATTTATCT+AGG | - | chr5_2:6108005-6108024 | Msa0752460:intron | 25.0% |
| !! | TGTTTGAATATCCTTTTACA+TGG | - | chr5_2:6108350-6108369 | Msa0752460:intron | 25.0% |
| !! | CAATCAATTTTCCATGTAAA+AGG | + | chr5_2:6108364-6108383 | None:intergenic | 25.0% |
| ! | AAACATTTAGATCGTTTCTA+TGG | - | chr5_2:6108560-6108579 | Msa0752460:intron | 25.0% |
| ! | TTAAAATCACTACAGCTTAT+TGG | - | chr5_2:6108618-6108637 | Msa0752460:intron | 25.0% |
| ! | TAAAATCACTACAGCTTATT+GGG | - | chr5_2:6108619-6108638 | Msa0752460:intron | 25.0% |
| ! | TTATTGGGAAAAATCAATCA+TGG | - | chr5_2:6108634-6108653 | Msa0752460:intron | 25.0% |
| !! | CTTGATAATTATACACTGTA+TGG | - | chr5_2:6108719-6108738 | Msa0752460:CDS | 25.0% |
| ! | ATAATGTTGAGATGATTGTT+TGG | + | chr5_2:6109154-6109173 | None:intergenic | 25.0% |
| ! | AAGTTATGAGTACAATATAG+TGG | - | chr5_2:6109205-6109224 | Msa0752460:CDS | 25.0% |
| ! | AGTTATGAGTACAATATAGT+GGG | - | chr5_2:6109206-6109225 | Msa0752460:CDS | 25.0% |
| !!! | TTTAGAATTTTTAGCCATGA+AGG | - | chr5_2:6109276-6109295 | Msa0752460:intron | 25.0% |
| !!! | TGAAACTTGTTTTGATTTTC+AGG | - | chr5_2:6109641-6109660 | Msa0752460:intron | 25.0% |
| ! | AAGAGGAAACTATAATTTAC+AGG | + | chr5_2:6110092-6110111 | None:intergenic | 25.0% |
| !! | TTTCAAAATTTTGCTTCATC+TGG | - | chr5_2:6110145-6110164 | Msa0752460:intron | 25.0% |
| ! | TAATTAGTAGCAAATAGAGT+GGG | + | chr5_2:6110441-6110460 | None:intergenic | 25.0% |
| ! | ATAATTAGTAGCAAATAGAG+TGG | + | chr5_2:6110442-6110461 | None:intergenic | 25.0% |
| GAAAAAGAGTGGAAAGAAAT+CGG | - | chr5_2:6104051-6104070 | Msa0752460:three_prime_UTR | 30.0% | |
| TTAACATAGAAAATCTCGGT+CGG | + | chr5_2:6104190-6104209 | None:intergenic | 30.0% | |
| GGTTAAACTAGCAAATCAAA+AGG | + | chr5_2:6104560-6104579 | None:intergenic | 30.0% | |
| ! | TTTTAATATACATCCAGGTG+CGG | - | chr5_2:6104630-6104649 | Msa0752460:intron | 30.0% |
| TTTAGCTATTCAAATTCCGT+TGG | + | chr5_2:6104699-6104718 | None:intergenic | 30.0% | |
| ACGGAATTTGAATAGCTAAA+AGG | - | chr5_2:6104699-6104718 | Msa0752460:intron | 30.0% | |
| CCAAATACAGCAATAATGAT+GGG | - | chr5_2:6104926-6104945 | Msa0752460:intron | 30.0% | |
| TAATAATAGTTTCCAACCTC+TGG | + | chr5_2:6105340-6105359 | None:intergenic | 30.0% | |
| GAGGTTGGAAACTATTATTA+TGG | - | chr5_2:6105340-6105359 | Msa0752460:intron | 30.0% | |
| TTGCAATATCACATATTCCA+TGG | + | chr5_2:6105666-6105685 | None:intergenic | 30.0% | |
| GATATTGCAATAAATTGGTC+TGG | - | chr5_2:6105676-6105695 | Msa0752460:intron | 30.0% | |
| CTATGTAAATGATATTGTGC+TGG | - | chr5_2:6105741-6105760 | Msa0752460:intron | 30.0% | |
| !!! | TGTGCTACAGGATTTTAATT+TGG | - | chr5_2:6105837-6105856 | Msa0752460:intron | 30.0% |
| TTTCTTGACCAACATTTCTA+TGG | - | chr5_2:6105874-6105893 | Msa0752460:intron | 30.0% | |
| TTCTTGACCAACATTTCTAT+GGG | - | chr5_2:6105875-6105894 | Msa0752460:intron | 30.0% | |
| CATCACATATTAATGTGCAA+GGG | + | chr5_2:6106005-6106024 | None:intergenic | 30.0% | |
| TATTATGAGAACCCCAAAAT+TGG | + | chr5_2:6106148-6106167 | None:intergenic | 30.0% | |
| ATACTTATTAAGCACGATGA+AGG | + | chr5_2:6106195-6106214 | None:intergenic | 30.0% | |
| TTCAACTTATATCTGAGTTG+CGG | - | chr5_2:6106264-6106283 | Msa0752460:intron | 30.0% | |
| AAGCTAATCACACAGTTATT+TGG | - | chr5_2:6106332-6106351 | Msa0752460:intron | 30.0% | |
| GTTTCTTGAAATGAACAACA+TGG | + | chr5_2:6106365-6106384 | None:intergenic | 30.0% | |
| ! | AAAAGTAGGACAAGTTCTTT+TGG | + | chr5_2:6106411-6106430 | None:intergenic | 30.0% |
| AGTTTCCCTTATATCTTTGA+AGG | - | chr5_2:6106486-6106505 | Msa0752460:CDS | 30.0% | |
| TAGTGCCTTTGATTGAAATT+TGG | - | chr5_2:6106669-6106688 | Msa0752460:intron | 30.0% | |
| ATTTGGATTACCTTTGTGAT+TGG | - | chr5_2:6106686-6106705 | Msa0752460:intron | 30.0% | |
| TTTGGATTACCTTTGTGATT+GGG | - | chr5_2:6106687-6106706 | Msa0752460:intron | 30.0% | |
| TGTTTCAATCTTTCGATCAA+AGG | - | chr5_2:6107025-6107044 | Msa0752460:intron | 30.0% | |
| TGGCTATACAATAAGAAATG+TGG | - | chr5_2:6107111-6107130 | Msa0752460:intron | 30.0% | |
| ATACAATAAGAAATGTGGCA+CGG | - | chr5_2:6107116-6107135 | Msa0752460:intron | 30.0% | |
| ! | CACTTTTCCTAGTTTATTGT+TGG | - | chr5_2:6107170-6107189 | Msa0752460:intron | 30.0% |
| TGACTTTCCTGGTTTATTTA+CGG | - | chr5_2:6107199-6107218 | Msa0752460:intron | 30.0% | |
| ATGGAATCCAATCAATGAAA+GGG | + | chr5_2:6107432-6107451 | None:intergenic | 30.0% | |
| ACTAGCTGTTGTACTATATA+TGG | + | chr5_2:6107455-6107474 | None:intergenic | 30.0% | |
| TATAGTACAACAGCTAGTAA+TGG | - | chr5_2:6107457-6107476 | Msa0752460:CDS | 30.0% | |
| GCAAAATCACCACAATAATT+AGG | - | chr5_2:6107573-6107592 | Msa0752460:CDS | 30.0% | |
| TATACCACTCCTAATTATTG+TGG | + | chr5_2:6107585-6107604 | None:intergenic | 30.0% | |
| ATAATTAGGAGTGGTATAGT+TGG | - | chr5_2:6107587-6107606 | Msa0752460:CDS | 30.0% | |
| ! | AAATGTTTAAAACCACCTGA+AGG | + | chr5_2:6107674-6107693 | None:intergenic | 30.0% |
| CCAATAGTGTGAATATAGAA+CGG | + | chr5_2:6107826-6107845 | None:intergenic | 30.0% | |
| !!! | TTCTTGTTTTCCATGTTACT+AGG | + | chr5_2:6107953-6107972 | None:intergenic | 30.0% |
| GCTCTTATATCATCCAATAA+AGG | + | chr5_2:6107983-6108002 | None:intergenic | 30.0% | |
| TATGATCTACTTAAGAGCAA+TGG | + | chr5_2:6108191-6108210 | None:intergenic | 30.0% | |
| !! | ATTTTGACATGGATGTTGAT+AGG | - | chr5_2:6108952-6108971 | Msa0752460:CDS | 30.0% |
| CATAACTTATTCTAATGCCT+GGG | + | chr5_2:6109193-6109212 | None:intergenic | 30.0% | |
| TCATAACTTATTCTAATGCC+TGG | + | chr5_2:6109194-6109213 | None:intergenic | 30.0% | |
| !!! | TGGTTTATTTATTTTGGGAC+CGG | - | chr5_2:6109508-6109527 | Msa0752460:intron | 30.0% |
| TTTACTAAATGATGGCACAA+TGG | - | chr5_2:6109565-6109584 | Msa0752460:intron | 30.0% | |
| TTTGTATAGTTGCACAATGT+TGG | - | chr5_2:6109588-6109607 | Msa0752460:intron | 30.0% | |
| TTGTATAGTTGCACAATGTT+GGG | - | chr5_2:6109589-6109608 | Msa0752460:intron | 30.0% | |
| !!! | TTTTTCAAGGTGAATAAGTG+GGG | + | chr5_2:6109821-6109840 | None:intergenic | 30.0% |
| !!! | CTTTTTCAAGGTGAATAAGT+GGG | + | chr5_2:6109822-6109841 | None:intergenic | 30.0% |
| TGTTAAAATTGCATGTCTTC+AGG | - | chr5_2:6109923-6109942 | Msa0752460:intron | 30.0% | |
| TTCCAACTGTAATATTAAGC+CGG | - | chr5_2:6110213-6110232 | Msa0752460:intron | 30.0% | |
| !!! | CTTCCGTTTTTTTTTAGGTA+TGG | - | chr5_2:6110264-6110283 | Msa0752460:intron | 30.0% |
| AAAATTGAGTAGCTCTTTGT+TGG | - | chr5_2:6110319-6110338 | Msa0752460:five_prime_UTR | 30.0% | |
| GGTGAGAATGAGATAGAAAA+AGG | - | chr5_2:6104072-6104091 | Msa0752460:three_prime_UTR | 35.0% | |
| ACCTTAAGTGTGGAGAAATA+GGG | + | chr5_2:6104415-6104434 | None:intergenic | 35.0% | |
| AATAAATAAAACACCGCACC+TGG | + | chr5_2:6104646-6104665 | None:intergenic | 35.0% | |
| AATATGCTTATCCTTGCCAA+CGG | - | chr5_2:6104680-6104699 | Msa0752460:intron | 35.0% | |
| TGCAAAACACGACAAAAGAA+CGG | + | chr5_2:6104780-6104799 | None:intergenic | 35.0% | |
| CTACACATCAAAACATGTGT+GGG | + | chr5_2:6104820-6104839 | None:intergenic | 35.0% | |
| !! | GAAGCATCTTTGAAGTTGTT+CGG | - | chr5_2:6104863-6104882 | Msa0752460:intron | 35.0% |
| GCCAAATACAGCAATAATGA+TGG | - | chr5_2:6104925-6104944 | Msa0752460:intron | 35.0% | |
| CCCATCATTATTGCTGTATT+TGG | + | chr5_2:6104929-6104948 | None:intergenic | 35.0% | |
| ! | CAGTCAGGGTAATAATTTGT+CGG | - | chr5_2:6105042-6105061 | Msa0752460:intron | 35.0% |
| GTCGGCAACTATAGTTATTA+TGG | - | chr5_2:6105060-6105079 | Msa0752460:intron | 35.0% | |
| ! | AGTTGTTATAGGTTGGATGA+TGG | - | chr5_2:6105240-6105259 | Msa0752460:intron | 35.0% |
| ! | TTCATATTTCTACGATCCAG+AGG | - | chr5_2:6105321-6105340 | Msa0752460:intron | 35.0% |
| TGGAAACTATTATTATGGGC+AGG | - | chr5_2:6105345-6105364 | Msa0752460:intron | 35.0% | |
| GGAAACTATTATTATGGGCA+GGG | - | chr5_2:6105346-6105365 | Msa0752460:intron | 35.0% | |
| GAATTCTATGTGGTTTCATC+GGG | + | chr5_2:6105375-6105394 | None:intergenic | 35.0% | |
| CGAATTCTATGTGGTTTCAT+CGG | + | chr5_2:6105376-6105395 | None:intergenic | 35.0% | |
| ! | TGTGTCATTCGAATTCTATG+TGG | + | chr5_2:6105385-6105404 | None:intergenic | 35.0% |
| !!! | ATGACTATGTGGCTTTTTTG+AGG | - | chr5_2:6105497-6105516 | Msa0752460:intron | 35.0% |
| !!! | TGACTATGTGGCTTTTTTGA+GGG | - | chr5_2:6105498-6105517 | Msa0752460:intron | 35.0% |
| ATCAGATTAGACAGTTGAAG+AGG | - | chr5_2:6105545-6105564 | Msa0752460:CDS | 35.0% | |
| CAGTTGAAGAGGTTTAATGT+TGG | - | chr5_2:6105556-6105575 | Msa0752460:CDS | 35.0% | |
| AGAGTAAAGACCATCAAACA+CGG | + | chr5_2:6105593-6105612 | None:intergenic | 35.0% | |
| ! | TCTTTTTGTCAGACATATGC+AGG | - | chr5_2:6105610-6105629 | Msa0752460:intron | 35.0% |
| ! | CTTTTTGTCAGACATATGCA+GGG | - | chr5_2:6105611-6105630 | Msa0752460:intron | 35.0% |
| ! | TTTTTGTCAGACATATGCAG+GGG | - | chr5_2:6105612-6105631 | Msa0752460:intron | 35.0% |
| ! | ATTGCAATAAATTGGTCTGG+TGG | - | chr5_2:6105679-6105698 | Msa0752460:intron | 35.0% |
| !!! | TGATATTGTGCTGGCTATTT+TGG | - | chr5_2:6105750-6105769 | Msa0752460:intron | 35.0% |
| TCAACAAGATAATGCAGGAA+AGG | + | chr5_2:6105809-6105828 | None:intergenic | 35.0% | |
| TTGATTTATGGTTGTGCTAC+AGG | - | chr5_2:6105825-6105844 | Msa0752460:intron | 35.0% | |
| GCATCACATATTAATGTGCA+AGG | + | chr5_2:6106006-6106025 | None:intergenic | 35.0% | |
| CGCAGCAAAAAATAAACTAC+TGG | + | chr5_2:6106229-6106248 | None:intergenic | 35.0% | |
| TCAACTTATATCTGAGTTGC+GGG | - | chr5_2:6106265-6106284 | Msa0752460:intron | 35.0% | |
| ! | TATTTTTCCCTTGTTGCTGA+TGG | - | chr5_2:6106451-6106470 | Msa0752460:CDS | 35.0% |
| !! | TTGACGATTAGTCTTTACTG+TGG | - | chr5_2:6106549-6106568 | Msa0752460:CDS | 35.0% |
| GATGTTCGTGATATTGGATA+TGG | - | chr5_2:6106836-6106855 | Msa0752460:intron | 35.0% | |
| CGTGATATTGGATATGGTAA+AGG | - | chr5_2:6106842-6106861 | Msa0752460:intron | 35.0% | |
| TTATTCACTGAATGTTCCCT+TGG | - | chr5_2:6106871-6106890 | Msa0752460:intron | 35.0% | |
| TCATCAATTCCATCATCCAA+GGG | + | chr5_2:6106890-6106909 | None:intergenic | 35.0% | |
| ATCATCAATTCCATCATCCA+AGG | + | chr5_2:6106891-6106910 | None:intergenic | 35.0% | |
| GTTTAAGCCATTAATGGGAA+AGG | - | chr5_2:6106928-6106947 | Msa0752460:intron | 35.0% | |
| TCTTTATCTGGAGATAGGTT+AGG | - | chr5_2:6107001-6107020 | Msa0752460:intron | 35.0% | |
| ! | GTTGGTAAATTTGACTTTCC+TGG | - | chr5_2:6107188-6107207 | Msa0752460:intron | 35.0% |
| TATTGATGCCTGGAAATCAT+TGG | - | chr5_2:6107246-6107265 | Msa0752460:intron | 35.0% | |
| TTCTCACAACTGACTATTAG+CGG | - | chr5_2:6107341-6107360 | Msa0752460:CDS | 35.0% | |
| GATGGAATCCAATCAATGAA+AGG | + | chr5_2:6107433-6107452 | None:intergenic | 35.0% | |
| GCTGTTGTACTATATATGGA+TGG | + | chr5_2:6107451-6107470 | None:intergenic | 35.0% | |
| ! | TTACTTGGTGAACATATGCT+AGG | + | chr5_2:6107536-6107555 | None:intergenic | 35.0% |
| ATCACCACAATAATTAGGAG+TGG | - | chr5_2:6107578-6107597 | Msa0752460:CDS | 35.0% | |
| CCGTTCTATATTCACACTAT+TGG | - | chr5_2:6107823-6107842 | Msa0752460:intron | 35.0% | |
| TATTCATAGTACTCATGCTG+AGG | + | chr5_2:6107899-6107918 | None:intergenic | 35.0% | |
| TACTTTAGCGAGTATAAGGT+TGG | + | chr5_2:6108298-6108317 | None:intergenic | 35.0% | |
| GATCTACTTTAGCGAGTATA+AGG | + | chr5_2:6108302-6108321 | None:intergenic | 35.0% | |
| GGATTAACAAAACGCAGTAA+TGG | + | chr5_2:6108483-6108502 | None:intergenic | 35.0% | |
| !! | TTACTGCGTTTTGTTAATCC+AGG | - | chr5_2:6108483-6108502 | Msa0752460:intron | 35.0% |
| CAAATGCAACTTTGACAGTT+TGG | + | chr5_2:6108540-6108559 | None:intergenic | 35.0% | |
| CCTCATACATGTTTATGGAA+TGG | + | chr5_2:6108678-6108697 | None:intergenic | 35.0% | |
| CCATTCCATAAACATGTATG+AGG | - | chr5_2:6108675-6108694 | Msa0752460:intron | 35.0% | |
| AAGACGATAGAGATGAAAGA+TGG | - | chr5_2:6108922-6108941 | Msa0752460:CDS | 35.0% | |
| AGACGATAGAGATGAAAGAT+GGG | - | chr5_2:6108923-6108942 | Msa0752460:CDS | 35.0% | |
| GAAAGACAGACTATCAAGAT+GGG | + | chr5_2:6108998-6109017 | None:intergenic | 35.0% | |
| TGAAAGACAGACTATCAAGA+TGG | + | chr5_2:6108999-6109018 | None:intergenic | 35.0% | |
| ! | TCTTGATAGTCTGTCTTTCA+AGG | - | chr5_2:6108999-6109018 | Msa0752460:CDS | 35.0% |
| CAAAGCAAAGAAAACAGGTT+AGG | + | chr5_2:6109113-6109132 | None:intergenic | 35.0% | |
| TGTTGCAAAGCAAAGAAAAC+AGG | + | chr5_2:6109118-6109137 | None:intergenic | 35.0% | |
| ! | ATGAGTACAATATAGTGGGA+TGG | - | chr5_2:6109210-6109229 | Msa0752460:CDS | 35.0% |
| TTCAACTTTGTCAGCCAAAA+GGG | + | chr5_2:6109625-6109644 | None:intergenic | 35.0% | |
| TTTCAACTTTGTCAGCCAAA+AGG | + | chr5_2:6109626-6109645 | None:intergenic | 35.0% | |
| AGATATTGCTACACCTTTCA+AGG | - | chr5_2:6109695-6109714 | Msa0752460:intron | 35.0% | |
| ! | TAACGGACAAAACATTACCT+TGG | + | chr5_2:6109733-6109752 | None:intergenic | 35.0% |
| !!! | CCTTTTTCAAGGTGAATAAG+TGG | + | chr5_2:6109823-6109842 | None:intergenic | 35.0% |
| CCACTTATTCACCTTGAAAA+AGG | - | chr5_2:6109820-6109839 | Msa0752460:intron | 35.0% | |
| !! | GCTAGAATTCACCTTTTTCA+AGG | + | chr5_2:6109834-6109853 | None:intergenic | 35.0% |
| TTGCTTCATCTGGAAAATGA+AGG | - | chr5_2:6110155-6110174 | Msa0752460:intron | 35.0% | |
| TGCTTCATCTGGAAAATGAA+GGG | - | chr5_2:6110156-6110175 | Msa0752460:intron | 35.0% | |
| TCTGGAAAATGAAGGGATAT+AGG | - | chr5_2:6110163-6110182 | Msa0752460:intron | 35.0% | |
| CTGGAAAATGAAGGGATATA+GGG | - | chr5_2:6110164-6110183 | Msa0752460:intron | 35.0% | |
| ATCCGGCTTAATATTACAGT+TGG | + | chr5_2:6110218-6110237 | None:intergenic | 35.0% | |
| TTAAGCCGGATTACAACTAA+TGG | - | chr5_2:6110227-6110246 | Msa0752460:intron | 35.0% | |
| !!! | GCGTTCTTCCGTTTTTTTTT+AGG | - | chr5_2:6110259-6110278 | Msa0752460:intron | 35.0% |
| TAGCTCTTTGTTGGATCTTT+GGG | - | chr5_2:6110328-6110347 | Msa0752460:five_prime_UTR | 35.0% | |
| ! | TTTTCACGAGAAACTCAAGA+TGG | + | chr5_2:6110370-6110389 | None:intergenic | 35.0% |
| ! | AAAATAGCTTTGCATCTGCA+CGG | - | chr5_2:6110486-6110505 | Msa0752460:five_prime_UTR | 35.0% |
| ATCTAGGTCTCTTTCCTTTC+AGG | - | chr5_2:6104157-6104176 | Msa0752460:three_prime_UTR | 40.0% | |
| GTGGAGAAATAGGGAATCTA+TGG | + | chr5_2:6104406-6104425 | None:intergenic | 40.0% | |
| ! | TCCCTATTTCTCCACACTTA+AGG | - | chr5_2:6104411-6104430 | Msa0752460:three_prime_UTR | 40.0% |
| CACCTTAAGTGTGGAGAAAT+AGG | + | chr5_2:6104416-6104435 | None:intergenic | 40.0% | |
| TTGTTGTCAGGTATCCAAGT+GGG | + | chr5_2:6104449-6104468 | None:intergenic | 40.0% | |
| CTATTCAAATTCCGTTGGCA+AGG | + | chr5_2:6104694-6104713 | None:intergenic | 40.0% | |
| AAACACGACAAAAGAACGGA+TGG | + | chr5_2:6104776-6104795 | None:intergenic | 40.0% | |
| GCTACACATCAAAACATGTG+TGG | + | chr5_2:6104821-6104840 | None:intergenic | 40.0% | |
| TTCAAAGATGCTTCAGAGCT+CGG | + | chr5_2:6104857-6104876 | None:intergenic | 40.0% | |
| CGAAGAATATAAGACAACGG+TGG | + | chr5_2:6105097-6105116 | None:intergenic | 40.0% | |
| !! | TGGATGATGGAAAGTGTTAG+TGG | - | chr5_2:6105253-6105272 | Msa0752460:intron | 40.0% |
| !! | ATGATGGAAAGTGTTAGTGG+AGG | - | chr5_2:6105256-6105275 | Msa0752460:intron | 40.0% |
| !! | TGATGGAAAGTGTTAGTGGA+GGG | - | chr5_2:6105257-6105276 | Msa0752460:intron | 40.0% |
| ! | TATTTCTACGATCCAGAGGT+TGG | - | chr5_2:6105325-6105344 | Msa0752460:intron | 40.0% |
| !!! | GACTATGTGGCTTTTTTGAG+GGG | - | chr5_2:6105499-6105518 | Msa0752460:intron | 40.0% |
| ! | TCTGATCTTGCTGTGTTTCA+GGG | + | chr5_2:6105531-6105550 | None:intergenic | 40.0% |
| ! | ATCTGATCTTGCTGTGTTTC+AGG | + | chr5_2:6105532-6105551 | None:intergenic | 40.0% |
| GAGTAAAGACCATCAAACAC+GGG | + | chr5_2:6105592-6105611 | None:intergenic | 40.0% | |
| ! | TTTTGTCAGACATATGCAGG+GGG | - | chr5_2:6105613-6105632 | Msa0752460:intron | 40.0% |
| GGTGCTCTTAAATTGAACCA+TGG | - | chr5_2:6105646-6105665 | Msa0752460:intron | 40.0% | |
| CGATATGTCGTTCGCATAAA+TGG | - | chr5_2:6106045-6106064 | Msa0752460:intron | 40.0% | |
| GGGGTTCTCATAATAGATGA+AGG | - | chr5_2:6106153-6106172 | Msa0752460:intron | 40.0% | |
| TCAAATGCCATCAGCAACAA+GGG | + | chr5_2:6106461-6106480 | None:intergenic | 40.0% | |
| TTCAAATGCCATCAGCAACA+AGG | + | chr5_2:6106462-6106481 | None:intergenic | 40.0% | |
| ! | TTTACTGTGGCTGGTTACTT+TGG | - | chr5_2:6106562-6106581 | Msa0752460:CDS | 40.0% |
| ! | AGGCCTTTTACACAACTGAT+AGG | - | chr5_2:6106762-6106781 | Msa0752460:intron | 40.0% |
| ! | GGCCTTTTACACAACTGATA+GGG | - | chr5_2:6106763-6106782 | Msa0752460:intron | 40.0% |
| GACCCTATCAGTTGTGTAAA+AGG | + | chr5_2:6106768-6106787 | None:intergenic | 40.0% | |
| AAGTTTGGGGATTACTTTCC+TGG | - | chr5_2:6106806-6106825 | Msa0752460:intron | 40.0% | |
| ACAGGAGATGTTCGTGATAT+TGG | - | chr5_2:6106830-6106849 | Msa0752460:intron | 40.0% | |
| TCCATCACCTTTCCCATTAA+TGG | + | chr5_2:6106938-6106957 | None:intergenic | 40.0% | |
| ! | ATTAATGGGAAAGGTGATGG+AGG | - | chr5_2:6106937-6106956 | Msa0752460:intron | 40.0% |
| CTGACTCTTTATCTGGAGAT+AGG | - | chr5_2:6106996-6107015 | Msa0752460:intron | 40.0% | |
| CAACAGAAGAGGAACATTGA+AGG | + | chr5_2:6107080-6107099 | None:intergenic | 40.0% | |
| AATGTTCCTCTTCTGTTGCT+CGG | - | chr5_2:6107082-6107101 | Msa0752460:intron | 40.0% | |
| ! | ATACTCACTGTTTGGGATGA+AGG | + | chr5_2:6107229-6107248 | None:intergenic | 40.0% |
| GGCATCAATACTCACTGTTT+GGG | + | chr5_2:6107236-6107255 | None:intergenic | 40.0% | |
| AGGCATCAATACTCACTGTT+TGG | + | chr5_2:6107237-6107256 | None:intergenic | 40.0% | |
| !! | AAACAGTGAGTATTGATGCC+TGG | - | chr5_2:6107236-6107255 | Msa0752460:intron | 40.0% |
| CAACATTTCAGAGCCTCTAT+TGG | + | chr5_2:6107280-6107299 | None:intergenic | 40.0% | |
| TCTCACAACTGACTATTAGC+GGG | - | chr5_2:6107342-6107361 | Msa0752460:CDS | 40.0% | |
| GCGGGAGATGTTAAATTCTA+CGG | - | chr5_2:6107360-6107379 | Msa0752460:CDS | 40.0% | |
| GGCAATGGAACATAAACTGA+TGG | + | chr5_2:6107411-6107430 | None:intergenic | 40.0% | |
| TCCATTGCCCTTTCATTGAT+TGG | - | chr5_2:6107422-6107441 | Msa0752460:CDS | 40.0% | |
| TCCAATCAATGAAAGGGCAA+TGG | + | chr5_2:6107426-6107445 | None:intergenic | 40.0% | |
| !! | ACAAATGGACTAATGCCTTC+AGG | - | chr5_2:6107656-6107675 | Msa0752460:CDS | 40.0% |
| CTATTGGATGTTGATCAGAC+AGG | - | chr5_2:6107839-6107858 | Msa0752460:intron | 40.0% | |
| TCTTGAAGCTCAGTATTTGG+AGG | + | chr5_2:6108067-6108086 | None:intergenic | 40.0% | |
| TCCAAATACTGAGCTTCAAG+AGG | - | chr5_2:6108066-6108085 | Msa0752460:intron | 40.0% | |
| ACCTCTTGAAGCTCAGTATT+TGG | + | chr5_2:6108070-6108089 | None:intergenic | 40.0% | |
| AGTTAGGGATGGATATACGA+AGG | + | chr5_2:6108255-6108274 | None:intergenic | 40.0% | |
| !! | GTTTTGTTAATCCAGGTGGA+TGG | - | chr5_2:6108490-6108509 | Msa0752460:intron | 40.0% |
| GTTTATGGAATGGCCATGTT+TGG | + | chr5_2:6108668-6108687 | None:intergenic | 40.0% | |
| GCACTCCTCATACATGTTTA+TGG | + | chr5_2:6108683-6108702 | None:intergenic | 40.0% | |
| TCGTCTTCATCTCTCTAAAC+AGG | + | chr5_2:6108900-6108919 | None:intergenic | 40.0% | |
| !! | ATGGGATCGTGATTTTGACA+TGG | - | chr5_2:6108941-6108960 | Msa0752460:CDS | 40.0% |
| GATAGGTATTCTCGTGTTTC+TGG | - | chr5_2:6108969-6108988 | Msa0752460:CDS | 40.0% | |
| TGAAGCTGAGCATAAAGACA+TGG | - | chr5_2:6109082-6109101 | Msa0752460:CDS | 40.0% | |
| TTGATTAAGAGTCCAACCGA+GGG | + | chr5_2:6109311-6109330 | None:intergenic | 40.0% | |
| TTTGATTAAGAGTCCAACCG+AGG | + | chr5_2:6109312-6109331 | None:intergenic | 40.0% | |
| ! | GTTCTGTTTTCCACTAGGTA+GGG | + | chr5_2:6109430-6109449 | None:intergenic | 40.0% |
| ! | AGTTCTGTTTTCCACTAGGT+AGG | + | chr5_2:6109431-6109450 | None:intergenic | 40.0% |
| TACCTAGTGGAAAACAGAAC+TGG | - | chr5_2:6109430-6109449 | Msa0752460:intron | 40.0% | |
| ! | AACCAGTTCTGTTTTCCACT+AGG | + | chr5_2:6109435-6109454 | None:intergenic | 40.0% |
| ! | TGGGAAGAATTGATCCCTTT+TGG | - | chr5_2:6109608-6109627 | Msa0752460:intron | 40.0% |
| AAAGGTGAATTCTAGCCACT+AGG | - | chr5_2:6109838-6109857 | Msa0752460:intron | 40.0% | |
| !!! | TTTTTTGTCAGGTAGCCTAG+TGG | + | chr5_2:6109856-6109875 | None:intergenic | 40.0% |
| ATAAGACCTGTCTAGTCTAG+TGG | - | chr5_2:6109900-6109919 | Msa0752460:intron | 40.0% | |
| TTAACACCACTAGACTAGAC+AGG | + | chr5_2:6109909-6109928 | None:intergenic | 40.0% | |
| ACCATTCATCAAAGAAGAGC+AGG | - | chr5_2:6109983-6110002 | Msa0752460:intron | 40.0% | |
| TCCTGCTCTTCTTTGATGAA+TGG | + | chr5_2:6109987-6110006 | None:intergenic | 40.0% | |
| AGATGAAGCCGTAATATCCA+CGG | - | chr5_2:6110032-6110051 | Msa0752460:intron | 40.0% | |
| GTAGCTCTTTGTTGGATCTT+TGG | - | chr5_2:6110327-6110346 | Msa0752460:five_prime_UTR | 40.0% | |
| !! | TTGTTGGATCTTTGGGATGA+AGG | - | chr5_2:6110335-6110354 | Msa0752460:five_prime_UTR | 40.0% |
| ! | AAATAGCTTTGCATCTGCAC+GGG | - | chr5_2:6110487-6110506 | Msa0752460:five_prime_UTR | 40.0% |
| ! | CCACTCTTTTTCTCGAACGA+GGG | + | chr5_2:6104043-6104062 | None:intergenic | 45.0% |
| ! | TCCACTCTTTTTCTCGAACG+AGG | + | chr5_2:6104044-6104063 | None:intergenic | 45.0% |
| AGAGAGAGAGAGAAGTTGCA+AGG | - | chr5_2:6104134-6104153 | Msa0752460:three_prime_UTR | 45.0% | |
| GAGAGAAGTTGCAAGGATCT+AGG | - | chr5_2:6104141-6104160 | Msa0752460:three_prime_UTR | 45.0% | |
| CATAGAAAATCTCGGTCGGT+CGG | + | chr5_2:6104186-6104205 | None:intergenic | 45.0% | |
| TCCCTCAAATCAGAACTGCA+AGG | - | chr5_2:6104379-6104398 | Msa0752460:three_prime_UTR | 45.0% | |
| ! | CCCTTGCAGTTCTGATTTGA+GGG | + | chr5_2:6104383-6104402 | None:intergenic | 45.0% |
| CCCTCAAATCAGAACTGCAA+GGG | - | chr5_2:6104380-6104399 | Msa0752460:three_prime_UTR | 45.0% | |
| GTTGTTGTCAGGTATCCAAG+TGG | + | chr5_2:6104450-6104469 | None:intergenic | 45.0% | |
| ! | TATGCTGGTGTTAAGCAGTC+AGG | - | chr5_2:6105027-6105046 | Msa0752460:intron | 45.0% |
| ! | ATGCTGGTGTTAAGCAGTCA+GGG | - | chr5_2:6105028-6105047 | Msa0752460:intron | 45.0% |
| TTCTATGTGGTTTCATCGGG+TGG | + | chr5_2:6105372-6105391 | None:intergenic | 45.0% | |
| ! | ACGCTCTTTTAGCCCACTAT+GGG | - | chr5_2:6105404-6105423 | Msa0752460:CDS | 45.0% |
| GTGTTGAAGCAACCCATAGT+GGG | + | chr5_2:6105419-6105438 | None:intergenic | 45.0% | |
| TGTGTTGAAGCAACCCATAG+TGG | + | chr5_2:6105420-6105439 | None:intergenic | 45.0% | |
| GTTCCATGCTGATGACTATG+TGG | - | chr5_2:6105486-6105505 | Msa0752460:intron | 45.0% | |
| AAGCCACATAGTCATCAGCA+TGG | + | chr5_2:6105492-6105511 | None:intergenic | 45.0% | |
| ! | CTGATCTTGCTGTGTTTCAG+GGG | + | chr5_2:6105530-6105549 | None:intergenic | 45.0% |
| GGAACTTCTCAAGATACACG+AGG | - | chr5_2:6105771-6105790 | Msa0752460:intron | 45.0% | |
| CGTGCAACCCATAGAAATGT+TGG | + | chr5_2:6105885-6105904 | None:intergenic | 45.0% | |
| !! | CGATTAGTCTTTACTGTGGC+TGG | - | chr5_2:6106553-6106572 | Msa0752460:CDS | 45.0% |
| ATCGATATCCACCATGGTGA+TGG | - | chr5_2:6106731-6106750 | Msa0752460:intron | 45.0% | |
| CTGAATGTTCCCTTGGATGA+TGG | - | chr5_2:6106878-6106897 | Msa0752460:intron | 45.0% | |
| GCCATTAATGGGAAAGGTGA+TGG | - | chr5_2:6106934-6106953 | Msa0752460:intron | 45.0% | |
| !! | GTGATGGAGGTTTTTAGACC+TGG | - | chr5_2:6106950-6106969 | Msa0752460:intron | 45.0% |
| !! | TGTGGTGCTGACTCTTTATC+TGG | - | chr5_2:6106989-6107008 | Msa0752460:intron | 45.0% |
| TAAGAAATGTGGCACGGTGT+TGG | - | chr5_2:6107122-6107141 | Msa0752460:intron | 45.0% | |
| AGGTGGTCCGTAAATAAACC+AGG | + | chr5_2:6107209-6107228 | None:intergenic | 45.0% | |
| !! | AATGGACTAATGCCTTCAGG+TGG | - | chr5_2:6107659-6107678 | Msa0752460:CDS | 45.0% |
| TCACGTTGCTCCTAGTAACA+TGG | - | chr5_2:6107940-6107959 | Msa0752460:intron | 45.0% | |
| CTCTCTTGGAATGGAACACT+TGG | + | chr5_2:6108043-6108062 | None:intergenic | 45.0% | |
| TTTGGAGGTCTCTCTTGGAA+TGG | + | chr5_2:6108052-6108071 | None:intergenic | 45.0% | |
| CAGTATTTGGAGGTCTCTCT+TGG | + | chr5_2:6108057-6108076 | None:intergenic | 45.0% | |
| ! | TAGCGAGTATAAGGTTGGCT+CGG | + | chr5_2:6108293-6108312 | None:intergenic | 45.0% |
| !! | GGTGCAAACTTTGCTGTTCA+TGG | - | chr5_2:6108396-6108415 | Msa0752460:intron | 45.0% |
| !! | CTGCGTTTTGTTAATCCAGG+TGG | - | chr5_2:6108486-6108505 | Msa0752460:intron | 45.0% |
| TTAAACGTGTTCCATCCACC+TGG | + | chr5_2:6108504-6108523 | None:intergenic | 45.0% | |
| ACAGCAATTCTCTTGCACGA+AGG | - | chr5_2:6109042-6109061 | Msa0752460:CDS | 45.0% | |
| CAGCAATTCTCTTGCACGAA+GGG | - | chr5_2:6109043-6109062 | Msa0752460:CDS | 45.0% | |
| TGACCTCAGATCTAATACCC+AGG | - | chr5_2:6109173-6109192 | Msa0752460:CDS | 45.0% | |
| ATGCCTGGGTATTAGATCTG+AGG | + | chr5_2:6109179-6109198 | None:intergenic | 45.0% | |
| ACTGCAGCAACAAAGCTATC+AGG | + | chr5_2:6109257-6109276 | None:intergenic | 45.0% | |
| !! | ATGAAGGATTAGTCCACCCT+CGG | - | chr5_2:6109292-6109311 | Msa0752460:intron | 45.0% |
| CAAGAAACAGAACTTGCGTC+CGG | + | chr5_2:6109530-6109549 | None:intergenic | 45.0% | |
| GAGCATGCAATCTCCTTGAA+AGG | + | chr5_2:6109711-6109730 | None:intergenic | 45.0% | |
| GACATGCATTGTGATACGCA+GGG | - | chr5_2:6109773-6109792 | Msa0752460:intron | 45.0% | |
| ACATGCATTGTGATACGCAG+GGG | - | chr5_2:6109774-6109793 | Msa0752460:intron | 45.0% | |
| ATTGCATGTCTTCAGGTGAC+AGG | - | chr5_2:6109930-6109949 | Msa0752460:intron | 45.0% | |
| TTGCATGTCTTCAGGTGACA+GGG | - | chr5_2:6109931-6109950 | Msa0752460:intron | 45.0% | |
| GATGAAGCCGTAATATCCAC+GGG | - | chr5_2:6110033-6110052 | Msa0752460:intron | 45.0% | |
| AGACACTAGTTGTCTAGGTG+GGG | + | chr5_2:6110064-6110083 | None:intergenic | 45.0% | |
| CAGACACTAGTTGTCTAGGT+GGG | + | chr5_2:6110065-6110084 | None:intergenic | 45.0% | |
| ACAGACACTAGTTGTCTAGG+TGG | + | chr5_2:6110066-6110085 | None:intergenic | 45.0% | |
| TCGACAGACACTAGTTGTCT+AGG | + | chr5_2:6110069-6110088 | None:intergenic | 45.0% | |
| GAATGACAGACAGCTGTAAG+AGG | + | chr5_2:6110109-6110128 | None:intergenic | 45.0% | |
| AGCCGGATTACAACTAATGG+CGG | - | chr5_2:6110230-6110249 | Msa0752460:intron | 45.0% | |
| CACCGCCATTAGTTGTAATC+CGG | + | chr5_2:6110235-6110254 | None:intergenic | 45.0% | |
| !!! | AATATTTTAATATAAAACAT+CGG | + | chr5_2:6106644-6106663 | None:intergenic | 5.0% |
| !!! | TTAATATATTAGATTTTAAA+AGG | + | chr5_2:6107703-6107722 | None:intergenic | 5.0% |
| !! | ATATATTAATCTAATATATT+AGG | - | chr5_2:6107714-6107733 | Msa0752460:CDS | 5.0% |
| CCCTCGTTCGAGAAAAAGAG+TGG | - | chr5_2:6104040-6104059 | Msa0752460:three_prime_UTR | 50.0% | |
| CTCTCTCTCTCTCTCTCTCT+CGG | + | chr5_2:6104126-6104145 | None:intergenic | 50.0% | |
| ! | GCCCTTGCAGTTCTGATTTG+AGG | + | chr5_2:6104384-6104403 | None:intergenic | 50.0% |
| GGACTCACACACCTTAAGTG+TGG | + | chr5_2:6104425-6104444 | None:intergenic | 50.0% | |
| TTGTCAGGTATCCAAGTGGG+CGG | + | chr5_2:6104446-6104465 | None:intergenic | 50.0% | |
| TTCACACCATCTGACCCTGA+TGG | + | chr5_2:6105292-6105311 | None:intergenic | 50.0% | |
| ! | CACGCTCTTTTAGCCCACTA+TGG | - | chr5_2:6105403-6105422 | Msa0752460:CDS | 50.0% |
| TGGGTTGCTTCAACACATGC+AGG | - | chr5_2:6105423-6105442 | Msa0752460:CDS | 50.0% | |
| AACCTACTGCCGCTAAAGAC+AGG | - | chr5_2:6105452-6105471 | Msa0752460:intron | 50.0% | |
| ACCTACTGCCGCTAAAGACA+GGG | - | chr5_2:6105453-6105472 | Msa0752460:intron | 50.0% | |
| CATCAGCATGGAACTTGCAG+AGG | + | chr5_2:6105480-6105499 | None:intergenic | 50.0% | |
| GAAGACTGTCCCGTGTTTGA+TGG | - | chr5_2:6105580-6105599 | Msa0752460:intron | 50.0% | |
| ACATATGCAGGGGGTTCTGT+TGG | - | chr5_2:6105622-6105641 | Msa0752460:intron | 50.0% | |
| ! | ACATCACGCCAAAAAGTGCG+AGG | - | chr5_2:6105705-6105724 | Msa0752460:intron | 50.0% |
| ! | CCAAAAAGTGCGAGGCTTCT+GGG | - | chr5_2:6105713-6105732 | Msa0752460:intron | 50.0% |
| ! | TGAGTTGCGGGTTTGTTCTG+TGG | - | chr5_2:6106277-6106296 | Msa0752460:intron | 50.0% |
| ! | GAGTTGCGGGTTTGTTCTGT+GGG | - | chr5_2:6106278-6106297 | Msa0752460:intron | 50.0% |
| AACACGCTGCCCAATCACAA+AGG | + | chr5_2:6106699-6106718 | None:intergenic | 50.0% | |
| TGGGCAGCGTGTTCTATATG+TGG | - | chr5_2:6106706-6106725 | Msa0752460:intron | 50.0% | |
| GTGGACATCGATATCCACCA+TGG | - | chr5_2:6106725-6106744 | Msa0752460:intron | 50.0% | |
| GGGGATTACTTTCCTGGAAC+AGG | - | chr5_2:6106812-6106831 | Msa0752460:intron | 50.0% | |
| TCACGAACATCTCCTGTTCC+AGG | + | chr5_2:6106827-6106846 | None:intergenic | 50.0% | |
| !! | GGTTTTTAGACCTGGTGCTG+TGG | - | chr5_2:6106958-6106977 | Msa0752460:intron | 50.0% |
| CATTGCAATACCACAGCACC+AGG | + | chr5_2:6106971-6106990 | None:intergenic | 50.0% | |
| ! | GGTGCTGTGGTATTGCAATG+TGG | - | chr5_2:6106971-6106990 | Msa0752460:intron | 50.0% |
| ! | CTCACTGTTTGGGATGAAGG+TGG | + | chr5_2:6107226-6107245 | None:intergenic | 50.0% |
| !! | GATCAGACAGGTGTTGCTCT+CGG | - | chr5_2:6107851-6107870 | Msa0752460:intron | 50.0% |
| !! | ATCAGACAGGTGTTGCTCTC+GGG | - | chr5_2:6107852-6107871 | Msa0752460:intron | 50.0% |
| ! | GCAACGTGAAGAGCATAGTC+TGG | + | chr5_2:6107929-6107948 | None:intergenic | 50.0% |
| CATGGCATGCAGACCAAACA+TGG | - | chr5_2:6108652-6108671 | Msa0752460:intron | 50.0% | |
| !! | GAGGGTGGACTAATCCTTCA+TGG | + | chr5_2:6109293-6109312 | None:intergenic | 50.0% |
| ATTAAGAGTCCAACCGAGGG+TGG | + | chr5_2:6109308-6109327 | None:intergenic | 50.0% | |
| ! | GTTTTCCACTAGGTAGGGAG+AGG | + | chr5_2:6109425-6109444 | None:intergenic | 50.0% |
| CAAGGAGATTGCATGCTCCA+AGG | - | chr5_2:6109713-6109732 | Msa0752460:intron | 50.0% | |
| GGACATGCATTGTGATACGC+AGG | - | chr5_2:6109772-6109791 | Msa0752460:intron | 50.0% | |
| ! | AGGTGAATAAGTGGGGTGTC+CGG | + | chr5_2:6109814-6109833 | None:intergenic | 50.0% |
| GTGGATTCAATGGCTGTGGA+TGG | - | chr5_2:6109960-6109979 | Msa0752460:intron | 50.0% | |
| GACACTAGTTGTCTAGGTGG+GGG | + | chr5_2:6110063-6110082 | None:intergenic | 50.0% | |
| GAGGGAACTCGCTTCCATCA+GGG | - | chr5_2:6105275-6105294 | Msa0752460:intron | 55.0% | |
| TCGCTTCCATCAGGGTCAGA+TGG | - | chr5_2:6105283-6105302 | Msa0752460:intron | 55.0% | |
| TCCCTGTCTTTAGCGGCAGT+AGG | + | chr5_2:6105457-6105476 | None:intergenic | 55.0% | |
| GCAGAGGTCCCTGTCTTTAG+CGG | + | chr5_2:6105464-6105483 | None:intergenic | 55.0% | |
| TATGCAGGGGGTTCTGTTGG+CGG | - | chr5_2:6105625-6105644 | Msa0752460:intron | 55.0% | |
| ! | GCCAAAAAGTGCGAGGCTTC+TGG | - | chr5_2:6105712-6105731 | Msa0752460:intron | 55.0% |
| ! | CCCAGAAGCCTCGCACTTTT+TGG | + | chr5_2:6105716-6105735 | None:intergenic | 55.0% |
| CCTCTACACCATCACCATGG+TGG | + | chr5_2:6106742-6106761 | None:intergenic | 55.0% | |
| !! | CCACCATGGTGATGGTGTAG+AGG | - | chr5_2:6106739-6106758 | Msa0752460:intron | 55.0% |
| CCTCCTCTACACCATCACCA+TGG | + | chr5_2:6106745-6106764 | None:intergenic | 55.0% | |
| !! | CCATGGTGATGGTGTAGAGG+AGG | - | chr5_2:6106742-6106761 | Msa0752460:intron | 55.0% |
| GTTCCTCTTCTGTTGCTCGG+TGG | - | chr5_2:6107085-6107104 | Msa0752460:intron | 55.0% | |
| !! | GGCACGGTGTTGGTGTTATG+AGG | - | chr5_2:6107132-6107151 | Msa0752460:intron | 55.0% |
| CAGTTGAGGTGGGGGAGTTA+GGG | + | chr5_2:6108270-6108289 | None:intergenic | 55.0% | |
| !! | TAAGGTTGGCTCGGCAGTTG+AGG | + | chr5_2:6108284-6108303 | None:intergenic | 55.0% |
| !! | AGGATTAGTCCACCCTCGGT+TGG | - | chr5_2:6109296-6109315 | Msa0752460:intron | 55.0% |
| AGTAGCCTCTCCCTACCTAG+TGG | - | chr5_2:6109417-6109436 | Msa0752460:intron | 55.0% | |
| ! | GTGAATAAGTGGGGTGTCCG+GGG | + | chr5_2:6109812-6109831 | None:intergenic | 55.0% |
| ! | GGTGAATAAGTGGGGTGTCC+GGG | + | chr5_2:6109813-6109832 | None:intergenic | 55.0% |
| TGTCTTCAGGTGACAGGGTC+CGG | - | chr5_2:6109936-6109955 | Msa0752460:intron | 55.0% | |
| CACAGCCATTGAATCCACCC+CGG | + | chr5_2:6109958-6109977 | None:intergenic | 55.0% | |
| GGGCTGACCCGTGGATATTA+CGG | + | chr5_2:6110043-6110062 | None:intergenic | 55.0% | |
| GGAGGGAACTCGCTTCCATC+AGG | - | chr5_2:6105274-6105293 | Msa0752460:intron | 60.0% | |
| CCTCCACCGAGCAACAGAAG+AGG | + | chr5_2:6107091-6107110 | None:intergenic | 60.0% | |
| ! | CCTCTTCTGTTGCTCGGTGG+AGG | - | chr5_2:6107088-6107107 | Msa0752460:intron | 60.0% |
| ! | CTTCTGTTGCTCGGTGGAGG+TGG | - | chr5_2:6107091-6107110 | Msa0752460:intron | 60.0% |
| TGAGGTGGGGGAGTTAGGGA+TGG | + | chr5_2:6108266-6108285 | None:intergenic | 60.0% | |
| GCAGTTGAGGTGGGGGAGTT+AGG | + | chr5_2:6108271-6108290 | None:intergenic | 60.0% | |
| !! | TTGGCTCGGCAGTTGAGGTG+GGG | + | chr5_2:6108279-6108298 | None:intergenic | 60.0% |
| !! | GTTGGCTCGGCAGTTGAGGT+GGG | + | chr5_2:6108280-6108299 | None:intergenic | 60.0% |
| GCATTGTGATACGCAGGGGC+CGG | - | chr5_2:6109778-6109797 | Msa0752460:intron | 60.0% | |
| CATTGTGATACGCAGGGGCC+GGG | - | chr5_2:6109779-6109798 | Msa0752460:intron | 60.0% | |
| ATTGTGATACGCAGGGGCCG+GGG | - | chr5_2:6109780-6109799 | Msa0752460:intron | 60.0% | |
| GTCTTCAGGTGACAGGGTCC+GGG | - | chr5_2:6109937-6109956 | Msa0752460:intron | 60.0% | |
| TCTTCAGGTGACAGGGTCCG+GGG | - | chr5_2:6109938-6109957 | Msa0752460:intron | 60.0% | |
| ! | AGGGTCCGGGGTGGATTCAA+TGG | - | chr5_2:6109950-6109969 | Msa0752460:intron | 60.0% |
| ! | CGGGGTGGATTCAATGGCTG+TGG | - | chr5_2:6109956-6109975 | Msa0752460:intron | 60.0% |
| CGGTCGGTCGGTCACCTGAA+AGG | + | chr5_2:6104174-6104193 | None:intergenic | 65.0% | |
| GGTGTGTGAGTCCGCCCACT+TGG | - | chr5_2:6104432-6104451 | Msa0752460:three_prime_UTR | 65.0% | |
| ! | TGGCTCGGCAGTTGAGGTGG+GGG | + | chr5_2:6108278-6108297 | None:intergenic | 65.0% |
| !! | GGTTGGCTCGGCAGTTGAGG+TGG | + | chr5_2:6108281-6108300 | None:intergenic | 65.0% |
| GGTGTCCGGGGTTCGAACCC+CGG | + | chr5_2:6109800-6109819 | None:intergenic | 70.0% | |
| TCAGGTGACAGGGTCCGGGG+TGG | - | chr5_2:6109941-6109960 | Msa0752460:intron | 70.0% | |
| TCTAGGTGGGGGCTGACCCG+TGG | + | chr5_2:6110052-6110071 | None:intergenic | 70.0% | |
| AGGGGCCGGGGTTCGAACCC+CGG | - | chr5_2:6109792-6109811 | Msa0752460:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 6103977 | 6110517 | 6103977 | ID=Msa0752460;Name=Msa0752460 |
| chr5_2 | mRNA | 6103977 | 6110517 | 6103977 | ID=Msa0752460-mRNA-1;Parent=Msa0752460;Name=Msa0752460-mRNA-1;_AED=0.01;_eAED=0.01;_QI=216|1|1|1|0.85|0.75|8|480|499 |
| chr5_2 | exon | 6103977 | 6104549 | 6103977 | ID=Msa0752460-mRNA-1:exon:2597;Parent=Msa0752460-mRNA-1 |
| chr5_2 | exon | 6104760 | 6104831 | 6104760 | ID=Msa0752460-mRNA-1:exon:2596;Parent=Msa0752460-mRNA-1 |
| chr5_2 | exon | 6105391 | 6105448 | 6105391 | ID=Msa0752460-mRNA-1:exon:2595;Parent=Msa0752460-mRNA-1 |
| chr5_2 | exon | 6105521 | 6105588 | 6105521 | ID=Msa0752460-mRNA-1:exon:2594;Parent=Msa0752460-mRNA-1 |
| chr5_2 | exon | 6106407 | 6106637 | 6106407 | ID=Msa0752460-mRNA-1:exon:2593;Parent=Msa0752460-mRNA-1 |
| chr5_2 | exon | 6107341 | 6107781 | 6107341 | ID=Msa0752460-mRNA-1:exon:2592;Parent=Msa0752460-mRNA-1 |
| chr5_2 | exon | 6108702 | 6109252 | 6108702 | ID=Msa0752460-mRNA-1:exon:2591;Parent=Msa0752460-mRNA-1 |
| chr5_2 | exon | 6110316 | 6110517 | 6110316 | ID=Msa0752460-mRNA-1:exon:2590;Parent=Msa0752460-mRNA-1 |
| chr5_2 | five_prime_UTR | 6110316 | 6110517 | 6110316 | ID=Msa0752460-mRNA-1:five_prime_utr;Parent=Msa0752460-mRNA-1 |
| chr5_2 | five_prime_UTR | 6109239 | 6109252 | 6109239 | ID=Msa0752460-mRNA-1:five_prime_utr;Parent=Msa0752460-mRNA-1 |
| chr5_2 | CDS | 6108702 | 6109238 | 6108702 | ID=Msa0752460-mRNA-1:cds;Parent=Msa0752460-mRNA-1 |
| chr5_2 | CDS | 6107341 | 6107781 | 6107341 | ID=Msa0752460-mRNA-1:cds;Parent=Msa0752460-mRNA-1 |
| chr5_2 | CDS | 6106407 | 6106637 | 6106407 | ID=Msa0752460-mRNA-1:cds;Parent=Msa0752460-mRNA-1 |
| chr5_2 | CDS | 6105521 | 6105588 | 6105521 | ID=Msa0752460-mRNA-1:cds;Parent=Msa0752460-mRNA-1 |
| chr5_2 | CDS | 6105391 | 6105448 | 6105391 | ID=Msa0752460-mRNA-1:cds;Parent=Msa0752460-mRNA-1 |
| chr5_2 | CDS | 6104760 | 6104831 | 6104760 | ID=Msa0752460-mRNA-1:cds;Parent=Msa0752460-mRNA-1 |
| chr5_2 | CDS | 6104457 | 6104549 | 6104457 | ID=Msa0752460-mRNA-1:cds;Parent=Msa0752460-mRNA-1 |
| chr5_2 | three_prime_UTR | 6103977 | 6104456 | 6103977 | ID=Msa0752460-mRNA-1:three_prime_utr;Parent=Msa0752460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
