AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0752680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0752680 MtrunA17_Chr5g0396801 97.977 346 7 0 1 346 1 346 0.0 698
Msa0752680 MtrunA17_Chr8g0347451 80.618 356 59 2 1 346 6 361 0.0 589
Msa0752680 MtrunA17_Chr7g0252401 39.748 317 151 7 29 341 202 482 1.76e-67 219
Msa0752680 MtrunA17_Chr3g0131501 41.694 307 152 8 36 341 203 483 2.95e-66 216
Msa0752680 MtrunA17_Chr3g0131501 30.928 194 129 2 28 221 289 477 1.61e-25 106
Msa0752680 MtrunA17_Chr3g0135861 37.654 324 158 8 36 340 33 331 4.35e-63 204
Msa0752680 MtrunA17_Chr8g0385571 38.762 307 161 7 36 341 225 505 4.00e-60 201
Msa0752680 MtrunA17_Chr8g0385571 27.363 201 141 2 21 221 304 499 2.16e-21 95.1
Msa0752680 MtrunA17_Chr6g0488081 36.646 322 167 6 34 343 15 311 4.23e-60 195
Msa0752680 MtrunA17_Chr5g0436041 37.846 325 173 7 21 338 19 321 2.76e-58 191
Msa0752680 MtrunA17_Chr7g0240341 36.792 318 168 8 32 338 19 314 4.87e-58 190
Msa0752680 MtrunA17_Chr1g0149111 35.314 303 167 6 36 338 137 410 5.40e-53 180
Msa0752680 MtrunA17_Chr1g0149111 31.034 203 129 3 24 225 219 411 1.31e-22 97.8
Msa0752680 MtrunA17_Chr1g0149111 29.000 200 118 6 138 337 136 311 1.46e-18 86.3
Msa0752680 MtrunA17_Chr3g0137941 33.663 303 172 5 36 338 120 393 1.69e-52 178
Msa0752680 MtrunA17_Chr3g0137941 31.034 203 129 3 24 225 202 394 5.38e-24 101
Msa0752680 MtrunA17_Chr2g0296061 32.919 322 179 8 40 338 17 324 6.21e-50 169
Msa0752680 MtrunA17_Chr2g0296061 28.571 210 123 4 138 335 12 206 6.61e-22 94.7
Msa0752680 MtrunA17_Chr2g0296061 28.000 225 142 4 15 224 105 324 1.64e-21 93.6
Msa0752680 MtrunA17_Chr4g0063561 32.673 303 175 6 36 338 121 394 3.63e-48 167
Msa0752680 MtrunA17_Chr4g0063561 28.431 204 136 4 25 228 205 398 1.05e-16 80.5
Msa0752680 MtrunA17_Chr4g0063561 26.000 200 121 7 138 335 120 294 2.02e-13 70.9
Msa0752680 MtrunA17_Chr4g0067231 30.864 324 185 6 40 338 16 325 1.39e-47 163
Msa0752680 MtrunA17_Chr4g0067231 28.000 225 142 5 15 224 106 325 1.11e-19 88.6
Msa0752680 MtrunA17_Chr7g0242311 32.770 296 158 6 49 339 98 357 1.90e-45 159
Msa0752680 MtrunA17_Chr4g0006851 32.432 296 159 6 49 339 100 359 2.31e-43 154
Msa0752680 MtrunA17_Chr3g0135801 29.321 324 188 9 31 340 27 323 6.21e-34 127
Msa0752680 MtrunA17_Chr6g0488341 31.298 262 147 5 82 343 8 236 4.34e-33 123
Msa0752680 MtrunA17_Chr8g0382201 30.141 355 194 8 5 341 167 485 1.09e-32 127
Msa0752680 MtrunA17_Chr5g0423111 33.220 295 169 8 50 338 33 305 7.12e-32 122
Msa0752680 MtrunA17_Chr5g0423111 29.730 185 118 6 51 229 132 310 2.29e-13 70.5
Msa0752680 MtrunA17_Chr6g0463041 30.992 242 115 4 137 343 21 245 1.29e-31 119
Msa0752680 MtrunA17_Chr6g0463041 25.161 155 105 2 72 224 95 240 2.87e-14 71.6
Msa0752680 MtrunA17_Chr4g0000261 25.836 329 193 8 36 345 64 360 3.01e-31 120
Msa0752680 MtrunA17_Chr8g0372531 29.373 303 183 8 52 343 28 310 6.10e-30 116
Msa0752680 MtrunA17_Chr7g0269701 29.545 308 183 8 40 338 24 306 1.09e-29 115
Msa0752680 MtrunA17_Chr7g0269701 28.846 208 123 5 138 339 19 207 1.20e-16 79.7
Msa0752680 MtrunA17_Chr7g0269701 27.717 184 114 5 54 229 139 311 1.54e-12 67.4
Msa0752680 MtrunA17_Chr8g0366791 31.348 319 183 7 33 339 4 298 1.27e-29 115
Msa0752680 MtrunA17_Chr3g0115801 31.464 321 177 7 36 341 114 406 4.67e-29 115
Msa0752680 MtrunA17_Chr2g0328891 31.611 329 172 11 13 321 41 336 2.97e-28 112
Msa0752680 MtrunA17_Chr1g0195101 28.618 304 186 8 50 346 31 310 1.33e-27 110
Msa0752680 MtrunA17_Chr5g0411411 28.840 319 191 7 33 339 4 298 3.38e-27 108
Msa0752680 MtrunA17_Chr8g0393031 27.667 300 166 10 36 316 16 283 1.20e-26 107
Msa0752680 MtrunA17_Chr8g0393031 26.214 206 130 5 143 340 21 212 9.90e-12 65.1
Msa0752680 MtrunA17_Chr5g0431531 27.508 309 199 6 24 332 25 308 2.02e-26 107
Msa0752680 MtrunA17_Chr3g0088301 28.829 333 182 11 10 321 65 363 1.72e-24 102
Msa0752680 MtrunA17_Chr4g0040341 27.950 322 178 12 37 338 74 361 7.62e-23 98.2
Msa0752680 MtrunA17_Chr8g0352031 28.197 305 167 9 37 321 67 339 8.83e-23 97.8
Msa0752680 MtrunA17_Chr8g0386871 24.781 343 207 10 7 341 291 590 2.10e-22 98.2
Msa0752680 MtrunA17_Chr4g0004571 32.653 196 117 6 26 218 103 286 8.82e-22 94.0
Msa0752680 MtrunA17_Chr4g0004571 25.407 307 197 9 36 338 14 292 1.60e-18 84.7
Msa0752680 MtrunA17_Chr1g0201361 24.927 341 209 7 6 346 19 312 2.15e-21 93.2
Msa0752680 MtrunA17_Chr1g0201361 29.515 227 137 5 17 235 104 315 3.95e-18 84.0
Msa0752680 MtrunA17_Chr7g0241521 26.032 315 193 7 32 335 11 296 3.96e-21 92.0
Msa0752680 MtrunA17_Chr7g0241521 27.315 216 138 4 129 338 5 207 2.46e-17 81.3
Msa0752680 MtrunA17_Chr4g0008061 25.868 317 191 9 32 335 9 294 6.99e-20 88.6
Msa0752680 MtrunA17_Chr4g0008061 26.961 204 130 4 141 338 15 205 8.37e-15 73.9
Msa0752680 MtrunA17_Chr3g0086811 23.706 367 211 11 1 336 1 329 8.37e-20 89.4
Msa0752680 MtrunA17_Chr3g0103681 27.190 331 184 9 27 338 6 298 1.36e-19 87.8
Msa0752680 MtrunA17_Chr8g0383321 26.023 342 199 9 4 338 11 305 5.29e-19 86.7
Msa0752680 MtrunA17_Chr8g0383321 29.293 198 126 3 32 229 127 310 3.75e-18 84.0
Msa0752680 MtrunA17_Chr1g0196921 29.480 173 107 4 145 316 18 176 2.39e-17 81.3
Msa0752680 MtrunA17_Chr1g0196921 23.588 301 199 8 47 340 23 299 2.21e-15 75.9
Msa0752680 MtrunA17_Chr3g0133111 23.724 333 200 9 35 338 3 310 2.49e-17 81.6
Msa0752680 MtrunA17_Chr4g0028531 26.174 298 185 10 39 328 23 293 2.49e-15 75.9
Msa0752680 MtrunA17_Chr8g0385891 29.150 247 153 9 22 262 59 289 9.80e-15 74.3
Msa0752680 MtrunA17_Chr8g0385891 25.521 192 121 5 147 338 80 249 5.72e-14 72.0
Msa0752680 MtrunA17_Chr6g0455381 24.183 306 204 7 38 335 18 303 1.45e-14 73.6
Msa0752680 MtrunA17_Chr7g0219891 25.000 304 204 7 38 335 22 307 1.78e-14 73.2
Msa0752680 MtrunA17_Chr6g0461981 28.821 229 145 8 39 262 64 279 2.86e-14 73.2
Msa0752680 MtrunA17_Chr6g0461981 24.747 198 127 5 141 338 64 239 4.26e-14 72.4
Msa0752680 MtrunA17_Chr6g0488171 33.036 112 66 1 232 343 5 107 7.15e-14 67.4
Msa0752680 MtrunA17_Chr4g0051841 25.311 241 158 8 29 262 22 247 7.28e-14 71.6
Msa0752680 MtrunA17_Chr4g0051841 24.138 203 125 7 144 338 26 207 4.21e-12 66.2
Msa0752680 MtrunA17_Chr5g0412401 24.047 341 198 9 35 338 3 319 1.11e-13 70.9
Msa0752680 MtrunA17_Chr5g0407451 26.446 242 148 7 31 264 16 235 2.05e-13 70.1
Msa0752680 MtrunA17_Chr7g0251981 25.789 190 119 5 147 336 89 256 2.90e-13 70.1
Msa0752680 MtrunA17_Chr7g0251981 28.631 241 146 9 30 262 76 298 5.63e-13 69.3
Msa0752680 MtrunA17_Chr5g0436571 25.510 294 176 9 74 343 46 320 3.40e-13 69.7
Msa0752680 MtrunA17_Chr2g0331771 31.579 152 92 4 52 198 263 407 4.42e-13 69.7
Msa0752680 MtrunA17_Chr2g0331771 22.659 331 202 8 28 346 146 434 2.77e-11 64.3
Msa0752680 MtrunA17_Chr2g0293621 23.194 263 181 5 79 335 69 316 1.90e-12 67.4
Msa0752680 MtrunA17_Chr4g0046981 23.659 317 208 7 36 341 10 303 6.70e-12 65.5
Msa0752680 MtrunA17_Chr1g0196161 28.492 179 118 3 44 221 3 172 9.30e-12 63.2
Msa0752680 MtrunA17_Chr6g0463351 22.807 285 194 7 51 335 80 338 1.18e-11 65.1
Msa0752680 MtrunA17_Chr8g0367641 23.145 337 197 11 36 338 4 312 1.57e-11 64.7
Msa0752680 MtrunA17_Chr1g0163521 30.435 161 99 4 178 338 204 351 1.67e-11 64.7
Msa0752680 MtrunA17_Chr7g0275411 23.429 350 208 11 28 338 7 335 9.54e-11 62.4
Msa0752680 MtrunA17_Chr8g0378951 20.875 297 204 5 36 329 19 287 9.83e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0752680 AT4G01100.1 77.401 354 70 3 1 346 1 352 0.0 563
Msa0752680 AT4G01100.2 74.185 368 71 4 1 346 1 366 0.0 551
Msa0752680 AT4G01100.3 81.126 302 55 1 47 346 1 302 0.0 519
Msa0752680 AT4G26180.1 40.187 321 158 7 34 343 17 314 2.64e-65 210
Msa0752680 AT5G51050.1 39.344 305 155 6 38 341 223 498 5.64e-65 214
Msa0752680 AT5G61810.2 38.562 306 155 6 36 341 63 335 9.12e-61 198
Msa0752680 AT5G61810.1 38.889 306 154 6 36 341 206 478 1.80e-59 199
Msa0752680 AT3G53940.1 37.419 310 167 6 36 338 71 360 3.16e-59 195
Msa0752680 AT3G53940.1 33.168 202 120 6 32 229 174 364 3.49e-25 104
Msa0752680 AT3G55640.1 36.774 310 175 5 30 335 30 322 1.58e-58 192
Msa0752680 AT3G55640.4 36.774 310 175 5 30 335 30 322 1.58e-58 192
Msa0752680 AT4G26180.2 39.597 298 146 7 34 320 17 291 2.85e-58 190
Msa0752680 AT4G26180.2 28.205 195 133 2 141 335 21 208 4.41e-18 83.6
Msa0752680 AT2G37890.1 36.254 331 178 7 17 338 26 332 8.27e-58 191
Msa0752680 AT1G14560.1 37.152 323 170 6 34 343 23 325 1.12e-56 187
Msa0752680 AT5G07320.1 37.374 297 151 7 46 341 217 479 4.81e-56 190
Msa0752680 AT4G32400.1 34.323 303 170 5 36 338 112 385 6.47e-51 174
Msa0752680 AT4G32400.1 29.756 205 129 6 26 226 194 387 9.30e-18 84.0
Msa0752680 AT4G32400.1 28.283 198 118 5 138 335 111 284 9.44e-17 81.3
Msa0752680 AT5G48970.1 33.542 319 184 7 40 338 24 334 2.39e-50 171
Msa0752680 AT5G48970.1 28.571 210 123 4 138 335 19 213 5.80e-21 92.8
Msa0752680 AT5G48970.1 24.107 224 155 3 15 224 112 334 1.01e-15 77.4
Msa0752680 AT1G14560.2 37.000 300 156 6 34 320 23 302 1.71e-49 168
Msa0752680 AT1G14560.2 28.022 182 116 4 160 335 44 216 4.47e-14 72.4
Msa0752680 AT3G21390.1 31.562 320 184 7 40 336 21 328 1.85e-46 161
Msa0752680 AT3G21390.1 25.778 225 151 5 15 224 107 330 3.29e-16 79.0
Msa0752680 AT3G21390.2 31.746 315 190 6 40 336 43 350 3.02e-46 161
Msa0752680 AT3G21390.2 25.333 225 152 3 15 224 129 352 3.44e-16 79.0
Msa0752680 AT5G01500.1 33.876 307 158 8 49 346 130 400 1.14e-44 158
Msa0752680 AT3G51870.1 30.619 307 168 8 49 346 102 372 6.10e-43 153
Msa0752680 AT5G48970.2 32.593 270 167 5 76 338 2 263 2.00e-41 146
Msa0752680 AT5G48970.2 24.107 224 155 3 15 224 41 263 7.47e-16 77.0
Msa0752680 AT3G55640.2 36.364 231 135 4 30 256 30 252 9.35e-39 139
Msa0752680 AT3G55640.2 27.313 227 140 5 118 336 15 224 2.27e-16 78.2
Msa0752680 AT3G55640.3 36.364 231 135 4 30 256 30 252 9.35e-39 139
Msa0752680 AT3G55640.3 27.313 227 140 5 118 336 15 224 2.27e-16 78.2
Msa0752680 AT1G14560.3 35.909 220 115 4 137 343 21 227 1.41e-38 137
Msa0752680 AT1G14560.3 30.288 208 116 5 37 224 24 222 1.57e-24 100
Msa0752680 AT3G53940.2 35.965 228 128 5 36 256 71 287 1.79e-35 130
Msa0752680 AT3G53940.2 29.577 213 125 4 131 335 63 258 6.48e-20 89.0
Msa0752680 AT5G56450.1 30.218 321 179 8 36 338 32 325 3.31e-35 131
Msa0752680 AT3G20240.1 28.438 320 182 9 36 338 50 339 4.96e-34 128
Msa0752680 AT3G20240.1 30.964 197 118 6 39 230 164 347 5.60e-17 81.3
Msa0752680 AT5G64970.1 31.173 324 182 6 32 341 129 425 1.78e-32 125
Msa0752680 AT5G64970.2 30.794 315 177 6 41 341 14 301 8.94e-32 121
Msa0752680 AT5G66380.1 28.758 306 194 6 40 338 12 300 5.05e-31 119
Msa0752680 AT5G46800.2 29.467 319 186 7 36 339 6 300 1.32e-28 112
Msa0752680 AT5G46800.2 28.780 205 127 4 32 224 102 299 8.19e-15 74.3
Msa0752680 AT5G46800.3 29.467 319 186 7 36 339 6 300 1.32e-28 112
Msa0752680 AT5G46800.3 28.780 205 127 4 32 224 102 299 8.19e-15 74.3
Msa0752680 AT5G46800.1 29.467 319 186 7 36 339 6 300 1.32e-28 112
Msa0752680 AT5G46800.1 28.780 205 127 4 32 224 102 299 8.19e-15 74.3
Msa0752680 AT1G25380.1 30.584 291 175 6 50 334 33 302 1.17e-27 111
Msa0752680 AT1G25380.1 31.122 196 113 5 148 339 28 205 1.56e-14 74.3
Msa0752680 AT1G25380.2 30.584 291 175 6 50 334 33 302 1.17e-27 111
Msa0752680 AT1G25380.2 31.122 196 113 5 148 339 28 205 1.56e-14 74.3
Msa0752680 AT1G78180.1 33.645 321 170 11 36 341 126 418 1.03e-26 109
Msa0752680 AT2G47490.1 28.428 299 177 8 50 338 29 300 2.26e-25 104
Msa0752680 AT2G47490.1 28.342 187 112 5 157 339 33 201 2.56e-13 70.1
Msa0752680 AT2G47490.1 28.022 182 122 4 51 229 130 305 4.46e-12 66.6
Msa0752680 AT5G13490.1 26.582 316 180 8 26 321 76 359 3.51e-25 105
Msa0752680 AT5G13490.2 26.582 316 180 8 26 321 76 359 3.51e-25 105
Msa0752680 AT3G08580.2 26.582 316 180 8 26 321 72 355 4.12e-25 104
Msa0752680 AT3G08580.1 26.582 316 180 8 26 321 72 355 4.12e-25 104
Msa0752680 AT5G64970.3 29.703 303 172 6 32 320 129 404 6.53e-25 104
Msa0752680 AT5G64970.3 28.426 197 117 4 140 336 134 306 2.77e-13 70.9
Msa0752680 AT5G58970.1 28.438 320 185 9 32 338 10 298 1.55e-24 102
Msa0752680 AT3G54110.1 28.025 314 188 8 32 335 9 294 2.36e-24 101
Msa0752680 AT3G54110.1 28.643 199 121 4 145 338 22 204 5.45e-18 83.6
Msa0752680 AT4G28390.1 29.180 305 163 11 37 321 82 353 4.23e-23 99.4
Msa0752680 AT4G28390.2 29.180 305 163 11 37 321 82 353 4.23e-23 99.4
Msa0752680 AT2G30160.1 27.070 314 206 6 26 338 30 321 6.67e-23 97.8
Msa0752680 AT2G30160.1 27.700 213 142 4 15 224 118 321 5.15e-12 66.6
Msa0752680 AT1G34065.1 27.356 329 189 10 11 338 56 335 3.65e-22 96.3
Msa0752680 AT1G34065.2 27.356 329 189 10 11 338 49 328 4.14e-22 95.9
Msa0752680 AT4G11440.1 26.752 314 191 10 29 340 329 605 5.63e-22 97.4
Msa0752680 AT4G11440.1 29.648 199 131 3 26 224 414 603 4.86e-16 79.7
Msa0752680 AT4G11440.2 26.752 314 191 10 29 340 329 605 5.63e-22 97.4
Msa0752680 AT4G11440.2 29.648 199 131 3 26 224 414 603 4.86e-16 79.7
Msa0752680 AT1G07030.1 25.806 310 206 6 29 338 31 316 2.54e-20 90.5
Msa0752680 AT5G17400.1 26.897 290 179 9 37 316 13 279 2.72e-20 90.1
Msa0752680 AT4G39460.2 30.806 211 130 4 27 237 130 324 4.55e-20 89.7
Msa0752680 AT4G39460.2 28.435 313 175 8 27 338 47 311 2.91e-19 87.8
Msa0752680 AT4G39460.1 30.806 211 130 4 27 237 130 324 4.55e-20 89.7
Msa0752680 AT4G39460.1 28.435 313 175 8 27 338 47 311 2.91e-19 87.8
Msa0752680 AT4G39460.3 30.806 211 130 4 27 237 130 324 4.55e-20 89.7
Msa0752680 AT4G39460.3 28.435 313 175 8 27 338 47 311 2.91e-19 87.8
Msa0752680 AT1G74240.1 22.346 358 226 8 3 336 5 334 1.21e-19 89.4
Msa0752680 AT1G74240.1 27.586 203 132 4 144 337 39 235 7.82e-12 66.2
Msa0752680 AT1G14140.1 31.667 180 109 5 140 316 15 183 6.19e-19 86.3
Msa0752680 AT1G14140.1 24.671 304 193 8 47 340 25 302 2.77e-17 81.6
Msa0752680 AT4G24570.1 24.332 337 191 7 36 338 4 310 6.18e-16 77.8
Msa0752680 AT1G74240.2 22.654 309 191 7 52 336 2 286 2.00e-15 76.6
Msa0752680 AT1G74240.2 27.749 191 123 4 156 337 3 187 7.42e-11 62.8
Msa0752680 AT5G01340.1 26.115 314 194 11 39 343 18 302 4.15e-15 75.5
Msa0752680 AT2G22500.1 22.124 339 194 9 36 338 4 308 5.78e-15 75.1
Msa0752680 AT3G48850.1 27.341 267 174 8 1 262 36 287 7.80e-15 75.1
Msa0752680 AT3G48850.1 23.348 227 147 6 116 338 44 247 4.29e-14 72.8
Msa0752680 AT5G14040.1 25.521 192 121 5 147 338 89 258 9.01e-15 75.1
Msa0752680 AT5G14040.1 28.390 236 153 8 30 262 76 298 4.31e-11 63.9
Msa0752680 AT2G39970.1 25.839 298 180 11 74 346 46 327 9.06e-15 74.7
Msa0752680 AT5G58970.2 30.348 201 119 5 145 338 20 206 1.32e-14 73.6
Msa0752680 AT5G58970.2 25.794 252 159 8 32 270 10 246 5.40e-12 65.9
Msa0752680 AT1G79900.1 25.856 263 156 8 54 313 32 258 7.60e-14 71.6
Msa0752680 AT1G79900.1 27.184 206 130 6 25 229 102 288 1.78e-11 64.7
Msa0752680 AT5G09470.1 26.136 264 160 8 81 338 98 332 1.73e-13 70.9
Msa0752680 AT4G27940.1 25.442 283 176 7 71 338 145 407 3.88e-12 67.4
Msa0752680 AT4G03115.2 26.126 222 125 6 129 338 17 211 4.60e-12 65.5
Msa0752680 AT4G03115.4 26.562 192 111 4 150 338 47 211 4.71e-12 65.5
Msa0752680 AT5G26200.1 24.503 302 201 7 46 335 48 334 4.73e-12 66.6
Msa0752680 AT1G72820.1 25.275 273 173 6 84 335 73 335 7.78e-12 66.2
Msa0752680 AT1G72820.2 25.275 273 173 6 84 335 73 335 7.78e-12 66.2
Msa0752680 AT5G42130.1 25.088 283 185 7 54 335 134 390 1.15e-11 65.9
Msa0752680 AT4G03115.1 26.562 192 111 4 150 338 47 211 1.22e-11 65.1
Msa0752680 AT4G03115.1 23.006 326 212 9 22 341 20 312 4.93e-11 63.5
Msa0752680 AT4G03115.3 26.562 192 111 4 150 338 79 243 1.51e-11 65.1
Msa0752680 AT4G03115.3 23.006 326 212 9 22 341 52 344 5.92e-11 63.5
Msa0752680 AT2G17270.1 22.930 314 198 11 31 339 17 291 5.14e-11 63.2

Find 110 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAACTTCACTGCTGAATT+TGG 0.104393 5_2:-6437019 None:intergenic
AAGGATTTCGGTACCATTTC+CGG 0.234210 5_2:-6437182 None:intergenic
CTCTTCTGCGTCTTGGAGCT+GGG 0.252032 5_2:+6437524 Msa0752680:CDS
CCTCTTCTGCGTCTTGGAGC+TGG 0.254698 5_2:+6437523 Msa0752680:CDS
TCAGCTAACCTTGACTGAAT+TGG 0.287777 5_2:-6438268 None:intergenic
CTTGCATGTGGGGCTGCTGC+TGG 0.296448 5_2:+6438054 Msa0752680:CDS
ATGCTCTTTCAACAGTCTTC+CGG 0.298234 5_2:+6437773 Msa0752680:CDS
TTCAGGGCTTAAAATATATA+TGG 0.317822 5_2:+6436936 Msa0752680:CDS
GTAAGTGATATGAAATTAAT+AGG 0.322620 5_2:-6435226 None:intergenic
TGCTCTTTCAACAGTCTTCC+GGG 0.332019 5_2:+6437774 Msa0752680:CDS
ACTGTAAAGTATGAGGGATT+TGG 0.351570 5_2:+6438222 Msa0752680:CDS
ATGCTCTAGCGCCTTCTTCC+CGG 0.363870 5_2:-6437792 None:intergenic
AAAATACAACGGAACAGTTC+AGG 0.368272 5_2:+6436919 Msa0752680:CDS
AGAACTTCACTGCTGAATTT+GGG 0.371459 5_2:-6437018 None:intergenic
AAATCACATGTCAAATCTTA+AGG 0.379134 5_2:-6438713 None:intergenic
AAGGAAAGTTTCCTGTTTGA+GGG 0.389917 5_2:-6435203 None:intergenic
TATCGGTTGCAAACCGGAAA+TGG 0.395097 5_2:+6437169 Msa0752680:CDS
GGGGCTGCTGCTGGAACTAT+TGG 0.396252 5_2:+6438063 Msa0752680:CDS
CAGTAAAACTGTAAAGTATG+AGG 0.403490 5_2:+6438215 Msa0752680:CDS
CAGCTAACCTTGACTGAATT+GGG 0.406618 5_2:-6438267 None:intergenic
TGGGATAATACGAGCACAAT+TGG 0.409492 5_2:-6436999 None:intergenic
ATTGAAGCTTGAAGCTGAAA+TGG 0.415184 5_2:-6435282 None:intergenic
AAAAGCGTGATTAGGAGGTT+TGG 0.416222 5_2:-6435373 None:intergenic
GGCGCTAGAGCATTGTATAA+AGG 0.419300 5_2:+6437802 Msa0752680:CDS
CTCACTCCTCTTCTGCGTCT+TGG 0.425612 5_2:+6437517 Msa0752680:CDS
GGATGGTTACCTTCAGTCAT+AGG 0.425783 5_2:+6437823 Msa0752680:CDS
ATTTCAGCTTCAAGCTTCAA+TGG 0.430101 5_2:+6435284 Msa0752680:exon
GAGATGGTCAAGGACGTTCT+AGG 0.432330 5_2:+6438645 Msa0752680:CDS
ATACTAATAAAAGCGTGATT+AGG 0.433504 5_2:-6435381 None:intergenic
AGGGGAATGTTTAAAGGAAA+CGG 0.441281 5_2:+6436974 Msa0752680:CDS
CTTGGAGCTGGGGCATGTGC+AGG 0.442547 5_2:+6437535 Msa0752680:CDS
AATGAATTATTCCCTCAAAC+AGG 0.445982 5_2:+6435192 None:intergenic
GTCTCCGCAATCGCCGTTGA+AGG 0.449535 5_2:+6435348 Msa0752680:CDS
GAAGGAAAGTTTCCTGTTTG+AGG 0.455304 5_2:-6435204 None:intergenic
GCTTCCGTTGTCACTGGTGA+CGG 0.466067 5_2:+6438153 Msa0752680:CDS
TCAACAGTCTTCCGGGAAGA+AGG 0.474429 5_2:+6437781 Msa0752680:CDS
TTAACAGTACCTGTACAGTT+AGG 0.476691 5_2:-6437606 None:intergenic
GAGATTGAAGATTCTGCTGC+AGG 0.484269 5_2:+6436605 Msa0752680:CDS
CGTCCTCGCACCAGGTCCAT+CGG 0.488129 5_2:-6437583 None:intergenic
CTTCCGTTGTCACTGGTGAC+GGG 0.490939 5_2:+6438154 Msa0752680:CDS
GACCACAAGGCTTGCATGTG+GGG 0.493690 5_2:+6438044 Msa0752680:CDS
AGGAGGTTTGGCACCTTCAA+CGG 0.494537 5_2:-6435361 None:intergenic
GTCCTCGCACCAGGTCCATC+GGG 0.496178 5_2:-6437582 None:intergenic
GGCGCTGCTTCCGTTGTCAC+TGG 0.499991 5_2:+6438147 Msa0752680:CDS
CTTGTCGCAGGTGGAGTCGC+CGG 0.500084 5_2:+6435414 Msa0752680:CDS
AGTCTCTATCGGTTGCAAAC+CGG 0.504263 5_2:+6437163 Msa0752680:CDS
TTCTTCTGCGAATGACATCA+AGG 0.504967 5_2:-6438104 None:intergenic
ATGCAGATGGGAGGCTGGAA+AGG 0.510793 5_2:+6438126 Msa0752680:CDS
GAAGAATGCAGATGGGAGGC+TGG 0.511460 5_2:+6438121 Msa0752680:CDS
TGTCACGAAGGCAATGGCTA+TGG 0.511840 5_2:-6438619 None:intergenic
CCAGCTCCAAGACGCAGAAG+AGG 0.514439 5_2:-6437523 None:intergenic
AAATTTCAACGGTTTAAAAG+AGG 0.515110 5_2:-6435252 None:intergenic
GTGATATGAAATTAATAGGA+AGG 0.515840 5_2:-6435222 None:intergenic
CGTTGTCACTGGTGACGGGA+AGG 0.519437 5_2:+6438158 Msa0752680:CDS
GGCACCTTCAACGGCGATTG+CGG 0.521482 5_2:-6435352 None:intergenic
AAATACAACGGAACAGTTCA+GGG 0.525612 5_2:+6436920 Msa0752680:CDS
CTAATAAAAGCGTGATTAGG+AGG 0.529278 5_2:-6435378 None:intergenic
TATATGAATCTCTAAAAGAC+TGG 0.535507 5_2:+6437971 Msa0752680:CDS
ATCTGCAAATCTCTTGTCGC+AGG 0.542029 5_2:+6435402 Msa0752680:CDS
GTGGTATTCTAAGTCTCTAT+CGG 0.546132 5_2:+6437152 Msa0752680:intron
ATGGCGTCTCAAGATTCAGC+TGG 0.547242 5_2:+6435303 Msa0752680:CDS
CATTCGCAGAAGAATGCAGA+TGG 0.551827 5_2:+6438113 Msa0752680:CDS
TGCAAATCTCTTGTCGCAGG+TGG 0.557858 5_2:+6435405 Msa0752680:CDS
CGCAACTTACCCGATGGACC+TGG 0.558753 5_2:+6437573 Msa0752680:CDS
GGGATTTGGAGCTTTATACA+AGG 0.559538 5_2:+6438236 Msa0752680:CDS
AATTTCAACGGTTTAAAAGA+GGG 0.563942 5_2:-6435251 None:intergenic
AGTAAAACTGTAAAGTATGA+GGG 0.564308 5_2:+6438216 Msa0752680:CDS
ATGGAACCTCAAAATTTCAA+CGG 0.565636 5_2:-6435263 None:intergenic
TTGATTAAAACAAAACCACT+TGG 0.571366 5_2:+6437994 Msa0752680:CDS
CTTACAACTCCTATGACTGA+AGG 0.574400 5_2:-6437832 None:intergenic
AAAATTCCTCTGTATTGATG+AGG 0.577478 5_2:-6437748 None:intergenic
GTTGTCACTGGTGACGGGAA+GGG 0.578565 5_2:+6438159 Msa0752680:CDS
TTGTCTGCAGATACCGTACG+TGG 0.581757 5_2:+6437933 Msa0752680:intron
ACGAAGGCAATGGCTATGGA+AGG 0.582467 5_2:-6438615 None:intergenic
TCTTCTGCGTCTTGGAGCTG+GGG 0.588235 5_2:+6437525 Msa0752680:CDS
AATAATTTACATAAAATCAG+TGG 0.588856 5_2:-6438830 None:intergenic
CTCGTATGTCACGAAGGCAA+TGG 0.590817 5_2:-6438625 None:intergenic
TTATAGTTCACGAACAGCTG+TGG 0.595117 5_2:+6436572 Msa0752680:intron
CAGAGCTAAGTGTGACCACA+AGG 0.595535 5_2:+6438031 Msa0752680:CDS
AAGTGAAACTCACACTCCAC+CGG 0.598603 5_2:-6435433 None:intergenic
CTAGAGCATTGTATAAAGGA+TGG 0.598668 5_2:+6437806 Msa0752680:CDS
AAATATATATGGAAAACTGA+GGG 0.600536 5_2:+6436947 Msa0752680:CDS
GTCGCAGGTGGAGTCGCCGG+TGG 0.605211 5_2:+6435417 Msa0752680:CDS
AGAATCTTCAATCTCTCTAG+AGG 0.605927 5_2:-6436597 None:intergenic
GGATTTGGAGCTTTATACAA+GGG 0.609484 5_2:+6438237 Msa0752680:CDS
CTTAGTACCCAATTCAGTCA+AGG 0.610354 5_2:+6438260 Msa0752680:CDS
TCTTCTGCGAATGACATCAA+GGG 0.610404 5_2:-6438103 None:intergenic
AGCCCCACATGCAAGCCTTG+TGG 0.617387 5_2:-6438046 None:intergenic
TACCCGATGGACCTGGTGCG+AGG 0.618370 5_2:+6437580 Msa0752680:CDS
TGCCTTCGTGACATACGAGA+TGG 0.618477 5_2:+6438629 Msa0752680:CDS
CTTCTGCGAATGACATCAAG+GGG 0.618902 5_2:-6438102 None:intergenic
CGCAGAAGAATGCAGATGGG+AGG 0.620203 5_2:+6438117 Msa0752680:CDS
AAAATATATATGGAAAACTG+AGG 0.621187 5_2:+6436946 Msa0752680:CDS
GAGTCTTGAGCAATTCCAAG+TGG 0.629550 5_2:-6438009 None:intergenic
TGACCACAAGGCTTGCATGT+GGG 0.632902 5_2:+6438043 Msa0752680:CDS
TAATCTTGAGTACACTGGCA+TGG 0.633949 5_2:+6438182 Msa0752680:CDS
AATGTCCGCAACTTACCCGA+TGG 0.649760 5_2:+6437567 Msa0752680:CDS
AAGGGTAATCTTGAGTACAC+TGG 0.650989 5_2:+6438177 Msa0752680:CDS
CTTCCCGTCACCAGTGACAA+CGG 0.653118 5_2:-6438157 None:intergenic
GACCATCTCGTATGTCACGA+AGG 0.657725 5_2:-6438631 None:intergenic
CGTGACATACGAGATGGTCA+AGG 0.657933 5_2:+6438635 Msa0752680:CDS
CAGGTCCATCGGGTAAGTTG+CGG 0.663278 5_2:-6437572 None:intergenic
CGAAGGCAATGGCTATGGAA+GGG 0.663950 5_2:-6438614 None:intergenic
GCATCTCCTCATCAATACAG+AGG 0.672044 5_2:+6437742 Msa0752680:CDS
TGGAACTATTGGCCAGACAG+TGG 0.674835 5_2:+6438074 Msa0752680:CDS
CGTCACAATGTAAAATACAA+CGG 0.675370 5_2:+6436908 Msa0752680:CDS
ATTCGCAGAAGAATGCAGAT+GGG 0.675451 5_2:+6438114 Msa0752680:CDS
GTGACCACAAGGCTTGCATG+TGG 0.679869 5_2:+6438042 Msa0752680:CDS
TGTCTGCAGATACCGTACGT+GGG 0.721600 5_2:+6437934 Msa0752680:intron
TTCTGCGAATGACATCAAGG+GGG 0.801026 5_2:-6438101 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATAATATAATATAATA+AGG - chr5_2:6435678-6435697 None:intergenic 0.0%
!! TATAATATAATATAATAAGG+CGG - chr5_2:6435675-6435694 None:intergenic 10.0%
!!! AATTTTTTTTTATCTGAATA+TGG + chr5_2:6437340-6437359 Msa0752680:intron 10.0%
!! ATAAAAATAAAAATAAAGTG+TGG - chr5_2:6437479-6437498 None:intergenic 10.0%
!! ATTTAATCTTCTGATTATTT+AGG + chr5_2:6435600-6435619 Msa0752680:intron 15.0%
!! ATAATATAATATAATAAGGC+GGG - chr5_2:6435674-6435693 None:intergenic 15.0%
!!! GAGCTATTAATTATTTATTT+TGG + chr5_2:6435766-6435785 Msa0752680:intron 15.0%
!! ATTGTATAAAAAGAGTAAAT+TGG - chr5_2:6436183-6436202 None:intergenic 15.0%
!!! CATTTTTATATGCTTAAAAT+AGG + chr5_2:6436512-6436531 Msa0752680:intron 15.0%
!! TACATTAAATATCTAACATA+TGG - chr5_2:6436654-6436673 None:intergenic 15.0%
!! GATATTTAATGTATTAACAT+AGG + chr5_2:6436661-6436680 Msa0752680:intron 15.0%
!!! TTTTTTTTTCCATTAATCTT+TGG + chr5_2:6437080-6437099 Msa0752680:intron 15.0%
!! GATGTATAAAAGATTATTAA+GGG - chr5_2:6437210-6437229 None:intergenic 15.0%
!! AGATGTATAAAAGATTATTA+AGG - chr5_2:6437211-6437230 None:intergenic 15.0%
!! ATAGAATATTTACTTTATCA+TGG + chr5_2:6437259-6437278 Msa0752680:intron 15.0%
!!! TTTTTATTCATATTATTGTG+AGG + chr5_2:6437412-6437431 Msa0752680:intron 15.0%
!!! TTTTATTCATATTATTGTGA+GGG + chr5_2:6437413-6437432 Msa0752680:intron 15.0%
!! ATTATTGTTTGTAGAATTTA+AGG + chr5_2:6437645-6437664 Msa0752680:intron 15.0%
!! TGAAAATGAATTAAACTTAA+TGG - chr5_2:6437700-6437719 None:intergenic 15.0%
!!! TAAGTTTAATTCATTTTCAA+TGG + chr5_2:6437701-6437720 Msa0752680:intron 15.0%
!! ATGATTTAAATCATTTATCT+AGG + chr5_2:6438345-6438364 Msa0752680:intron 15.0%
!! AAATAGTAATAGTTAAAAAG+TGG + chr5_2:6438535-6438554 Msa0752680:intron 15.0%
!! AATAATTTACATAAAATCAG+TGG - chr5_2:6438833-6438852 None:intergenic 15.0%
!! GTAAGTGATATGAAATTAAT+AGG - chr5_2:6435229-6435248 None:intergenic 20.0%
!! AAATACAGAAACAGAAAAAT+GGG - chr5_2:6435642-6435661 None:intergenic 20.0%
!!! AAGTTTGAGATTTCTTTATA+TGG - chr5_2:6435838-6435857 None:intergenic 20.0%
!! TAAAAAAAAGTTCAAAACGT+AGG - chr5_2:6435906-6435925 None:intergenic 20.0%
!!! TAATATTTTCTCTCTCTATT+TGG + chr5_2:6435927-6435946 Msa0752680:intron 20.0%
!! TTTGTGAATTATGTTTCATT+TGG + chr5_2:6436365-6436384 Msa0752680:intron 20.0%
!!! AACCTTTAAAGTTTAAACAT+TGG - chr5_2:6436709-6436728 None:intergenic 20.0%
!!! TAAGATCATTTTTAAAATGC+AGG + chr5_2:6436877-6436896 Msa0752680:intron 20.0%
!! AAAATATATATGGAAAACTG+AGG + chr5_2:6436946-6436965 Msa0752680:CDS 20.0%
!! AAATATATATGGAAAACTGA+GGG + chr5_2:6436947-6436966 Msa0752680:CDS 20.0%
!! ACAAATTTACCAAAGATTAA+TGG - chr5_2:6437092-6437111 None:intergenic 20.0%
!!! GATTATTTTATTCTGTCAAT+TGG + chr5_2:6437293-6437312 Msa0752680:intron 20.0%
!! TGAATAAAAATGAAGATTGA+AGG - chr5_2:6437402-6437421 None:intergenic 20.0%
!! TTTATTCATATTATTGTGAG+GGG + chr5_2:6437414-6437433 Msa0752680:intron 20.0%
!! AGCAATTAATTAATGCAAAT+GGG - chr5_2:6438306-6438325 None:intergenic 20.0%
!! AAGCAATTAATTAATGCAAA+TGG - chr5_2:6438307-6438326 None:intergenic 20.0%
!! ATTTAAATCATTTATCTAGG+TGG + chr5_2:6438348-6438367 Msa0752680:intron 20.0%
!! TTTAAATCATTTATCTAGGT+GGG + chr5_2:6438349-6438368 Msa0752680:intron 20.0%
!! CTAAAATTCTAAATTTCTCT+AGG - chr5_2:6438412-6438431 None:intergenic 20.0%
!!! ATTTAGAATTTTAGATACAG+TGG + chr5_2:6438418-6438437 Msa0752680:intron 20.0%
!! GAACACAAAATTCAATTTAT+AGG + chr5_2:6438509-6438528 Msa0752680:intron 20.0%
!! TAGTTAAAAAGTGGTTTATA+TGG + chr5_2:6438544-6438563 Msa0752680:intron 20.0%
! GTGATATGAAATTAATAGGA+AGG - chr5_2:6435225-6435244 None:intergenic 25.0%
! AATTTCAACGGTTTAAAAGA+GGG - chr5_2:6435254-6435273 None:intergenic 25.0%
! AAATTTCAACGGTTTAAAAG+AGG - chr5_2:6435255-6435274 None:intergenic 25.0%
!! TTTAAACCGTTGAAATTTTG+AGG + chr5_2:6435257-6435276 Msa0752680:five_prime_UTR 25.0%
!! ATACTAATAAAAGCGTGATT+AGG - chr5_2:6435384-6435403 None:intergenic 25.0%
! GAAATACAGAAACAGAAAAA+TGG - chr5_2:6435643-6435662 None:intergenic 25.0%
! AAAAAAAATAGATTCACACG+TGG - chr5_2:6435737-6435756 None:intergenic 25.0%
!! CTCAAACTTGAAATGATTTT+TGG + chr5_2:6435849-6435868 Msa0752680:intron 25.0%
!!! GTTTTGTTATAGAAATCACT+TGG - chr5_2:6436098-6436117 None:intergenic 25.0%
! AGTGATTTCTATAACAAAAC+TGG + chr5_2:6436098-6436117 Msa0752680:intron 25.0%
! TTGTATACAATCAATCTAAG+TGG + chr5_2:6436257-6436276 Msa0752680:intron 25.0%
!!! TAGTTTTGATTTTCATCTCA+AGG - chr5_2:6436315-6436334 None:intergenic 25.0%
!! TTATGATTTTGCATTGTGAT+AGG + chr5_2:6436483-6436502 Msa0752680:intron 25.0%
! TATGGTACTATAAGCTTAAA+GGG - chr5_2:6436636-6436655 None:intergenic 25.0%
! ATATGGTACTATAAGCTTAA+AGG - chr5_2:6436637-6436656 None:intergenic 25.0%
! CTCCAATGTTTAAACTTTAA+AGG + chr5_2:6436704-6436723 Msa0752680:intron 25.0%
!! AAAGGTTTATTGTTGATTAC+TGG + chr5_2:6436722-6436741 Msa0752680:intron 25.0%
! AATGCATTTAAGAAAATGTG+TGG + chr5_2:6436799-6436818 Msa0752680:intron 25.0%
! ACTGAACAACAAGTAATATA+AGG - chr5_2:6436854-6436873 None:intergenic 25.0%
! TTCAGGGCTTAAAATATATA+TGG + chr5_2:6436936-6436955 Msa0752680:CDS 25.0%
! TAAAAGATTATTAAGGGAGA+AGG - chr5_2:6437204-6437223 None:intergenic 25.0%
! ATATTTACTTTATCATGGTG+TGG + chr5_2:6437264-6437283 Msa0752680:intron 25.0%
! TAAAAATAAAGTGTGGACAA+TGG - chr5_2:6437472-6437491 None:intergenic 25.0%
! GAAACATGAAATTAAAAGCT+TGG - chr5_2:6437899-6437918 None:intergenic 25.0%
!! TATATGAATCTCTAAAAGAC+TGG + chr5_2:6437971-6437990 Msa0752680:CDS 25.0%
! TTGATTAAAACAAAACCACT+TGG + chr5_2:6437994-6438013 Msa0752680:CDS 25.0%
! AGTAAAACTGTAAAGTATGA+GGG + chr5_2:6438216-6438235 Msa0752680:CDS 25.0%
! TTCTATGACTAAGACAAAAT+TGG - chr5_2:6438492-6438511 None:intergenic 25.0%
! AAATCACATGTCAAATCTTA+AGG - chr5_2:6438716-6438735 None:intergenic 25.0%
ATGGAACCTCAAAATTTCAA+CGG - chr5_2:6435266-6435285 None:intergenic 30.0%
AAGAGAACGGTATAAGTATA+AGG - chr5_2:6435517-6435536 None:intergenic 30.0%
CAAACTAAAGAACTTATCGT+TGG - chr5_2:6435544-6435563 None:intergenic 30.0%
! GACATTCAAGAGTTGTTATT+TGG - chr5_2:6436031-6436050 None:intergenic 30.0%
! TTCAGACCAAAGTTGTTATT+TGG - chr5_2:6436127-6436146 None:intergenic 30.0%
TATACATGTACATATCGCTT+TGG - chr5_2:6436228-6436247 None:intergenic 30.0%
CATTTAAGAAAATGTGTGGA+TGG + chr5_2:6436803-6436822 Msa0752680:intron 30.0%
CGTCACAATGTAAAATACAA+CGG + chr5_2:6436908-6436927 Msa0752680:CDS 30.0%
AGTATAAAACAGTGATCAGA+AGG - chr5_2:6437126-6437145 None:intergenic 30.0%
! ACTGTTTTATACTAATGCAG+TGG + chr5_2:6437133-6437152 Msa0752680:intron 30.0%
TTATTAAGGGAGAAGGATTT+CGG - chr5_2:6437197-6437216 None:intergenic 30.0%
! TCTATCTGCTTTATTAGAGT+TGG - chr5_2:6437244-6437263 None:intergenic 30.0%
!! CATTGACTTGTTATCTTTGT+TGG + chr5_2:6437674-6437693 Msa0752680:intron 30.0%
! AAAATTCCTCTGTATTGATG+AGG - chr5_2:6437751-6437770 None:intergenic 30.0%
CATGAAATTAAAAGCTTGGT+TGG - chr5_2:6437895-6437914 None:intergenic 30.0%
GAAAAATTTAAACCCACGTA+CGG - chr5_2:6437949-6437968 None:intergenic 30.0%
CAGTAAAACTGTAAAGTATG+AGG + chr5_2:6438215-6438234 Msa0752680:CDS 30.0%
CAATTGCAATTCTTCTCTAA+TGG + chr5_2:6438580-6438599 Msa0752680:intron 30.0%
AATTCTTCTCTAATGGTTTC+AGG + chr5_2:6438587-6438606 Msa0752680:intron 30.0%
ATTGAAGCTTGAAGCTGAAA+TGG - chr5_2:6435285-6435304 None:intergenic 35.0%
ATTTCAGCTTCAAGCTTCAA+TGG + chr5_2:6435284-6435303 Msa0752680:exon 35.0%
! CTAATAAAAGCGTGATTAGG+AGG - chr5_2:6435381-6435400 None:intergenic 35.0%
TATCGTTGGATTGAAGAGAA+CGG - chr5_2:6435530-6435549 None:intergenic 35.0%
AAATGGGATTCACATGGAAA+AGG - chr5_2:6435626-6435645 None:intergenic 35.0%
ACAGAAAAATGGGATTCACA+TGG - chr5_2:6435632-6435651 None:intergenic 35.0%
!! TCTGTTTCTGTATTTCCTAC+CGG + chr5_2:6435647-6435666 Msa0752680:intron 35.0%
! TCTCTATTTGGATGATGATG+AGG + chr5_2:6435939-6435958 Msa0752680:intron 35.0%
! AGTTCTGTGTGTATTTTACG+CGG + chr5_2:6435973-6435992 Msa0752680:intron 35.0%
TATGTCAGTCTTGATTACCA+AGG + chr5_2:6436053-6436072 Msa0752680:intron 35.0%
! ATCTATCTCTATTGATGGAC+TGG - chr5_2:6436413-6436432 None:intergenic 35.0%
GTCCATCAATAGAGATAGAT+TGG + chr5_2:6436413-6436432 Msa0752680:intron 35.0%
AGCCAATCTATCTCTATTGA+TGG - chr5_2:6436418-6436437 None:intergenic 35.0%
! TTCAAAGATGCACTGTGTTT+TGG + chr5_2:6436459-6436478 Msa0752680:intron 35.0%
! TCAAAGATGCACTGTGTTTT+GGG + chr5_2:6436460-6436479 Msa0752680:intron 35.0%
AGAATCTTCAATCTCTCTAG+AGG - chr5_2:6436600-6436619 None:intergenic 35.0%
! TATTGTTGATTACTGGACTC+AGG + chr5_2:6436729-6436748 Msa0752680:intron 35.0%
TAAGAAAATGTGTGGATGGA+TGG + chr5_2:6436807-6436826 Msa0752680:intron 35.0%
AAAATACAACGGAACAGTTC+AGG + chr5_2:6436919-6436938 Msa0752680:CDS 35.0%
AAATACAACGGAACAGTTCA+GGG + chr5_2:6436920-6436939 Msa0752680:CDS 35.0%
! TATGGAAAACTGAGGGTTTT+AGG + chr5_2:6436954-6436973 Msa0752680:CDS 35.0%
! ATGGAAAACTGAGGGTTTTA+GGG + chr5_2:6436955-6436974 Msa0752680:CDS 35.0%
!!! GGTTTTAGGGGAATGTTTAA+AGG + chr5_2:6436968-6436987 Msa0752680:CDS 35.0%
AGGGGAATGTTTAAAGGAAA+CGG + chr5_2:6436974-6436993 Msa0752680:CDS 35.0%
AGAACTTCACTGCTGAATTT+GGG - chr5_2:6437021-6437040 None:intergenic 35.0%
AAGAACTTCACTGCTGAATT+TGG - chr5_2:6437022-6437041 None:intergenic 35.0%
GTGGTATTCTAAGTCTCTAT+CGG + chr5_2:6437152-6437171 Msa0752680:intron 35.0%
TCGAGCTAACAACTTGAATA+TGG - chr5_2:6437374-6437393 None:intergenic 35.0%
TACCTACCTTTCAAACTTCA+AGG + chr5_2:6437440-6437459 Msa0752680:intron 35.0%
! ACATAGCCTTGAAGTTTGAA+AGG - chr5_2:6437449-6437468 None:intergenic 35.0%
TTAACAGTACCTGTACAGTT+AGG - chr5_2:6437609-6437628 None:intergenic 35.0%
!! CTAGAGCATTGTATAAAGGA+TGG + chr5_2:6437806-6437825 Msa0752680:CDS 35.0%
ACTGTAAAGTATGAGGGATT+TGG + chr5_2:6438222-6438241 Msa0752680:CDS 35.0%
! GGATTTGGAGCTTTATACAA+GGG + chr5_2:6438237-6438256 Msa0752680:CDS 35.0%
AATCATTTATCTAGGTGGGT+AGG + chr5_2:6438353-6438372 Msa0752680:intron 35.0%
ACTGCAAGGAAACAAAAACA+CGG + chr5_2:6438449-6438468 Msa0752680:intron 35.0%
! AAAAGCGTGATTAGGAGGTT+TGG - chr5_2:6435376-6435395 None:intergenic 40.0%
!! CTGTTTCTGTATTTCCTACC+GGG + chr5_2:6435648-6435667 Msa0752680:intron 40.0%
ATAATATAATAAGGCGGGCC+CGG - chr5_2:6435669-6435688 None:intergenic 40.0%
! GAAAGTTTGCTCTTCAACCT+TGG - chr5_2:6436073-6436092 None:intergenic 40.0%
TGGCGTCCAAATAACAACTT+TGG + chr5_2:6436118-6436137 Msa0752680:intron 40.0%
! GTGCATCTTTGAAAATCAGC+TGG - chr5_2:6436452-6436471 None:intergenic 40.0%
TTATAGTTCACGAACAGCTG+TGG + chr5_2:6436572-6436591 Msa0752680:intron 40.0%
!! TGGAAAACTGAGGGTTTTAG+GGG + chr5_2:6436956-6436975 Msa0752680:CDS 40.0%
TGGGATAATACGAGCACAAT+TGG - chr5_2:6437002-6437021 None:intergenic 40.0%
AAACAGTGATCAGAAGGACA+TGG - chr5_2:6437120-6437139 None:intergenic 40.0%
AAGGATTTCGGTACCATTTC+CGG - chr5_2:6437185-6437204 None:intergenic 40.0%
AGCCTTGAAGTTTGAAAGGT+AGG - chr5_2:6437445-6437464 None:intergenic 40.0%
ATGCTCTTTCAACAGTCTTC+CGG + chr5_2:6437773-6437792 Msa0752680:CDS 40.0%
CTTACAACTCCTATGACTGA+AGG - chr5_2:6437835-6437854 None:intergenic 40.0%
TCTTCTGCGAATGACATCAA+GGG - chr5_2:6438106-6438125 None:intergenic 40.0%
TTCTTCTGCGAATGACATCA+AGG - chr5_2:6438107-6438126 None:intergenic 40.0%
ATTCGCAGAAGAATGCAGAT+GGG + chr5_2:6438114-6438133 Msa0752680:CDS 40.0%
AAGGGTAATCTTGAGTACAC+TGG + chr5_2:6438177-6438196 Msa0752680:CDS 40.0%
TAATCTTGAGTACACTGGCA+TGG + chr5_2:6438182-6438201 Msa0752680:CDS 40.0%
! GGGATTTGGAGCTTTATACA+AGG + chr5_2:6438236-6438255 Msa0752680:CDS 40.0%
CTTAGTACCCAATTCAGTCA+AGG + chr5_2:6438260-6438279 Msa0752680:CDS 40.0%
CAGCTAACCTTGACTGAATT+GGG - chr5_2:6438270-6438289 None:intergenic 40.0%
TCAGCTAACCTTGACTGAAT+TGG - chr5_2:6438271-6438290 None:intergenic 40.0%
CAGTGGTATATGAAACTGCA+AGG + chr5_2:6438435-6438454 Msa0752680:intron 40.0%
CTGCAAGGAAACAAAAACAC+GGG + chr5_2:6438450-6438469 Msa0752680:intron 40.0%
TGCAAGGAAACAAAAACACG+GGG + chr5_2:6438451-6438470 Msa0752680:intron 40.0%
TCTTCTCTAATGGTTTCAGG+TGG + chr5_2:6438590-6438609 Msa0752680:intron 40.0%
ATCTGCAAATCTCTTGTCGC+AGG + chr5_2:6435402-6435421 Msa0752680:CDS 45.0%
AAGTGAAACTCACACTCCAC+CGG - chr5_2:6435436-6435455 None:intergenic 45.0%
! TGTATTTTACGCGGTGTCTC+TGG + chr5_2:6435982-6436001 Msa0752680:intron 45.0%
!!! GACTGGTTTAGACGTGCTTT+TGG - chr5_2:6436396-6436415 None:intergenic 45.0%
GAGATTGAAGATTCTGCTGC+AGG + chr5_2:6436605-6436624 Msa0752680:CDS 45.0%
AAAATGTGTGGATGGATGGC+AGG + chr5_2:6436811-6436830 Msa0752680:intron 45.0%
AAATGTGTGGATGGATGGCA+GGG + chr5_2:6436812-6436831 Msa0752680:intron 45.0%
! AGTCTCTATCGGTTGCAAAC+CGG + chr5_2:6437163-6437182 Msa0752680:CDS 45.0%
! TATCGGTTGCAAACCGGAAA+TGG + chr5_2:6437169-6437188 Msa0752680:CDS 45.0%
GCATCTCCTCATCAATACAG+AGG + chr5_2:6437742-6437761 Msa0752680:CDS 45.0%
TGCTCTTTCAACAGTCTTCC+GGG + chr5_2:6437774-6437793 Msa0752680:CDS 45.0%
!! GGCGCTAGAGCATTGTATAA+AGG + chr5_2:6437802-6437821 Msa0752680:CDS 45.0%
GGATGGTTACCTTCAGTCAT+AGG + chr5_2:6437823-6437842 Msa0752680:CDS 45.0%
GAGTCTTGAGCAATTCCAAG+TGG - chr5_2:6438012-6438031 None:intergenic 45.0%
TTCTGCGAATGACATCAAGG+GGG - chr5_2:6438104-6438123 None:intergenic 45.0%
CTTCTGCGAATGACATCAAG+GGG - chr5_2:6438105-6438124 None:intergenic 45.0%
CATTCGCAGAAGAATGCAGA+TGG + chr5_2:6438113-6438132 Msa0752680:CDS 45.0%
ATGGCGTCTCAAGATTCAGC+TGG + chr5_2:6435303-6435322 Msa0752680:CDS 50.0%
AGGAGGTTTGGCACCTTCAA+CGG - chr5_2:6435364-6435383 None:intergenic 50.0%
TGCAAATCTCTTGTCGCAGG+TGG + chr5_2:6435405-6435424 Msa0752680:CDS 50.0%
AATGTCCGCAACTTACCCGA+TGG + chr5_2:6437567-6437586 Msa0752680:CDS 50.0%
TCAACAGTCTTCCGGGAAGA+AGG + chr5_2:6437781-6437800 Msa0752680:CDS 50.0%
TTGTCTGCAGATACCGTACG+TGG + chr5_2:6437933-6437952 Msa0752680:intron 50.0%
TGTCTGCAGATACCGTACGT+GGG + chr5_2:6437934-6437953 Msa0752680:intron 50.0%
CAGAGCTAAGTGTGACCACA+AGG + chr5_2:6438031-6438050 Msa0752680:CDS 50.0%
TGACCACAAGGCTTGCATGT+GGG + chr5_2:6438043-6438062 Msa0752680:CDS 50.0%
TGGAACTATTGGCCAGACAG+TGG + chr5_2:6438074-6438093 Msa0752680:CDS 50.0%
CGAAGGCAATGGCTATGGAA+GGG - chr5_2:6438617-6438636 None:intergenic 50.0%
ACGAAGGCAATGGCTATGGA+AGG - chr5_2:6438618-6438637 None:intergenic 50.0%
TGTCACGAAGGCAATGGCTA+TGG - chr5_2:6438622-6438641 None:intergenic 50.0%
CTCGTATGTCACGAAGGCAA+TGG - chr5_2:6438628-6438647 None:intergenic 50.0%
TGCCTTCGTGACATACGAGA+TGG + chr5_2:6438629-6438648 Msa0752680:CDS 50.0%
GACCATCTCGTATGTCACGA+AGG - chr5_2:6438634-6438653 None:intergenic 50.0%
CGTGACATACGAGATGGTCA+AGG + chr5_2:6438635-6438654 Msa0752680:CDS 50.0%
GAGATGGTCAAGGACGTTCT+AGG + chr5_2:6438645-6438664 Msa0752680:CDS 50.0%
TATAATAAGGCGGGCCCGGT+AGG - chr5_2:6435665-6435684 None:intergenic 55.0%
CTCACTCCTCTTCTGCGTCT+TGG + chr5_2:6437517-6437536 Msa0752680:CDS 55.0%
CTCTTCTGCGTCTTGGAGCT+GGG + chr5_2:6437524-6437543 Msa0752680:CDS 55.0%
TCTTCTGCGTCTTGGAGCTG+GGG + chr5_2:6437525-6437544 Msa0752680:CDS 55.0%
CAGGTCCATCGGGTAAGTTG+CGG - chr5_2:6437575-6437594 None:intergenic 55.0%
ATGCTCTAGCGCCTTCTTCC+CGG - chr5_2:6437795-6437814 None:intergenic 55.0%
GTGACCACAAGGCTTGCATG+TGG + chr5_2:6438042-6438061 Msa0752680:CDS 55.0%
GACCACAAGGCTTGCATGTG+GGG + chr5_2:6438044-6438063 Msa0752680:CDS 55.0%
CGCAGAAGAATGCAGATGGG+AGG + chr5_2:6438117-6438136 Msa0752680:CDS 55.0%
GAAGAATGCAGATGGGAGGC+TGG + chr5_2:6438121-6438140 Msa0752680:CDS 55.0%
ATGCAGATGGGAGGCTGGAA+AGG + chr5_2:6438126-6438145 Msa0752680:CDS 55.0%
GCTTCCGTTGTCACTGGTGA+CGG + chr5_2:6438153-6438172 Msa0752680:CDS 55.0%
CTTCCGTTGTCACTGGTGAC+GGG + chr5_2:6438154-6438173 Msa0752680:CDS 55.0%
CTTCCCGTCACCAGTGACAA+CGG - chr5_2:6438160-6438179 None:intergenic 55.0%
!! GTTGTCACTGGTGACGGGAA+GGG + chr5_2:6438159-6438178 Msa0752680:CDS 55.0%
GTCTCCGCAATCGCCGTTGA+AGG + chr5_2:6435348-6435367 Msa0752680:CDS 60.0%
GGCACCTTCAACGGCGATTG+CGG - chr5_2:6435355-6435374 None:intergenic 60.0%
CCAGCTCCAAGACGCAGAAG+AGG - chr5_2:6437526-6437545 None:intergenic 60.0%
CCTCTTCTGCGTCTTGGAGC+TGG + chr5_2:6437523-6437542 Msa0752680:CDS 60.0%
CGCAACTTACCCGATGGACC+TGG + chr5_2:6437573-6437592 Msa0752680:CDS 60.0%
GCGAGGACGCCTAACTGTAC+AGG + chr5_2:6437597-6437616 Msa0752680:CDS 60.0%
AGCCCCACATGCAAGCCTTG+TGG - chr5_2:6438049-6438068 None:intergenic 60.0%
GGGGCTGCTGCTGGAACTAT+TGG + chr5_2:6438063-6438082 Msa0752680:CDS 60.0%
! CAAGGGGGTATGCCACTGTC+TGG - chr5_2:6438089-6438108 None:intergenic 60.0%
!! CGTTGTCACTGGTGACGGGA+AGG + chr5_2:6438158-6438177 Msa0752680:CDS 60.0%
CTTGTCGCAGGTGGAGTCGC+CGG + chr5_2:6435414-6435433 Msa0752680:CDS 65.0%
CTTGGAGCTGGGGCATGTGC+AGG + chr5_2:6437535-6437554 Msa0752680:CDS 65.0%
TACCCGATGGACCTGGTGCG+AGG + chr5_2:6437580-6437599 Msa0752680:CDS 65.0%
GTCCTCGCACCAGGTCCATC+GGG - chr5_2:6437585-6437604 None:intergenic 65.0%
CGTCCTCGCACCAGGTCCAT+CGG - chr5_2:6437586-6437605 None:intergenic 65.0%
CAGTTAGGCGTCCTCGCACC+AGG - chr5_2:6437594-6437613 None:intergenic 65.0%
CTTGCATGTGGGGCTGCTGC+TGG + chr5_2:6438054-6438073 Msa0752680:CDS 65.0%
GGCGCTGCTTCCGTTGTCAC+TGG + chr5_2:6438147-6438166 Msa0752680:CDS 65.0%
GTCGCAGGTGGAGTCGCCGG+TGG + chr5_2:6435417-6435436 Msa0752680:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 6435205 6438867 6435205 ID=Msa0752680;Name=Msa0752680
chr5_2 mRNA 6435205 6438867 6435205 ID=Msa0752680-mRNA-1;Parent=Msa0752680;Name=Msa0752680-mRNA-1;_AED=0.17;_eAED=0.17;_QI=98|1|1|1|1|1|8|175|346
chr5_2 exon 6435205 6435442 6435205 ID=Msa0752680-mRNA-1:exon:2712;Parent=Msa0752680-mRNA-1
chr5_2 exon 6436578 6436626 6436578 ID=Msa0752680-mRNA-1:exon:2713;Parent=Msa0752680-mRNA-1
chr5_2 exon 6436899 6437062 6436899 ID=Msa0752680-mRNA-1:exon:2714;Parent=Msa0752680-mRNA-1
chr5_2 exon 6437153 6437190 6437153 ID=Msa0752680-mRNA-1:exon:2715;Parent=Msa0752680-mRNA-1
chr5_2 exon 6437506 6437618 6437506 ID=Msa0752680-mRNA-1:exon:2716;Parent=Msa0752680-mRNA-1
chr5_2 exon 6437736 6437849 6437736 ID=Msa0752680-mRNA-1:exon:2717;Parent=Msa0752680-mRNA-1
chr5_2 exon 6437943 6438281 6437943 ID=Msa0752680-mRNA-1:exon:2718;Parent=Msa0752680-mRNA-1
chr5_2 exon 6438609 6438867 6438609 ID=Msa0752680-mRNA-1:exon:2719;Parent=Msa0752680-mRNA-1
chr5_2 five_prime_UTR 6435205 6435302 6435205 ID=Msa0752680-mRNA-1:five_prime_utr;Parent=Msa0752680-mRNA-1
chr5_2 CDS 6435303 6435442 6435303 ID=Msa0752680-mRNA-1:cds;Parent=Msa0752680-mRNA-1
chr5_2 CDS 6436578 6436626 6436578 ID=Msa0752680-mRNA-1:cds;Parent=Msa0752680-mRNA-1
chr5_2 CDS 6436899 6437062 6436899 ID=Msa0752680-mRNA-1:cds;Parent=Msa0752680-mRNA-1
chr5_2 CDS 6437153 6437190 6437153 ID=Msa0752680-mRNA-1:cds;Parent=Msa0752680-mRNA-1
chr5_2 CDS 6437506 6437618 6437506 ID=Msa0752680-mRNA-1:cds;Parent=Msa0752680-mRNA-1
chr5_2 CDS 6437736 6437849 6437736 ID=Msa0752680-mRNA-1:cds;Parent=Msa0752680-mRNA-1
chr5_2 CDS 6437943 6438281 6437943 ID=Msa0752680-mRNA-1:cds;Parent=Msa0752680-mRNA-1
chr5_2 CDS 6438609 6438692 6438609 ID=Msa0752680-mRNA-1:cds;Parent=Msa0752680-mRNA-1
chr5_2 three_prime_UTR 6438693 6438867 6438693 ID=Msa0752680-mRNA-1:three_prime_utr;Parent=Msa0752680-mRNA-1
Gene Sequence

>Msa0752680

ATGGCGTCTCAAGATTCAGCTGGAAAGACAAATGATCAGTCTAAAGTCTCCGCAATCGCCGTTGAAGGTGCCAAACCTCCTAATCACGCTTTTATTAGTATCTGCAAATCTCTTGTCGCAGGTGGAGTCGCCGGTGGAGTTTCACGAACAGCTGTGGCTCCTCTAGAGAGATTGAAGATTCTGCTGCAGGTTCAAAATCGTCACAATGTAAAATACAACGGAACAGTTCAGGGCTTAAAATATATATGGAAAACTGAGGGTTTTAGGGGAATGTTTAAAGGAAACGGAACCAATTGTGCTCGTATTATCCCAAATTCAGCAGTGAAGTTCTTTAGCTATGAGCAAGCATCTAATGGTATTCTAAGTCTCTATCGGTTGCAAACCGGAAATGAAGAAGCTCAACTCACTCCTCTTCTGCGTCTTGGAGCTGGGGCATGTGCAGGAATCATTGCAATGTCCGCAACTTACCCGATGGACCTGGTGCGAGGACGCCTAACTGTACAGACAGAAGCATCTCCTCATCAATACAGAGGAATTTTTAATGCTCTTTCAACAGTCTTCCGGGAAGAAGGCGCTAGAGCATTGTATAAAGGATGGTTACCTTCAGTCATAGGAGTTATACCGTACGTGGGTTTAAATTTTTCTGTATATGAATCTCTAAAAGACTGGTTGATTAAAACAAAACCACTTGGAATTGCTCAAGACTCAGAGCTAAGTGTGACCACAAGGCTTGCATGTGGGGCTGCTGCTGGAACTATTGGCCAGACAGTGGCATACCCCCTTGATGTCATTCGCAGAAGAATGCAGATGGGAGGCTGGAAAGGCGCTGCTTCCGTTGTCACTGGTGACGGGAAGGGTAATCTTGAGTACACTGGCATGGTTGATGCATTCAGTAAAACTGTAAAGTATGAGGGATTTGGAGCTTTATACAAGGGCTTAGTACCCAATTCAGTCAAGGTGGTCCCTTCCATAGCCATTGCCTTCGTGACATACGAGATGGTCAAGGACGTTCTAGGAGTTGAAATGAGAATATCTGACTGA
Protein sequence

>Msa0752680

MASQDSAGKTNDQSKVSAIAVEGAKPPNHAFISICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNRHNVKYNGTVQGLKYIWKTEGFRGMFKGNGTNCARIIPNSAVKFFSYEQASNGILSLYRLQTGNEEAQLTPLLRLGAGACAGIIAMSATYPMDLVRGRLTVQTEASPHQYRGIFNALSTVFREEGARALYKGWLPSVIGVIPYVGLNFSVYESLKDWLIKTKPLGIAQDSELSVTTRLACGAAAGTIGQTVAYPLDVIRRRMQMGGWKGAASVVTGDGKGNLEYTGMVDAFSKTVKYEGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDVLGVEMRISD*