AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0794990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0794990 MtrunA17_Chr5g0396801 97.977 346 7 0 1 346 1 346 0.0 698
Msa0794990 MtrunA17_Chr8g0347451 80.618 356 59 2 1 346 6 361 0.0 589
Msa0794990 MtrunA17_Chr7g0252401 39.748 317 151 7 29 341 202 482 2.29e-67 219
Msa0794990 MtrunA17_Chr3g0131501 41.694 307 152 8 36 341 203 483 3.25e-66 216
Msa0794990 MtrunA17_Chr3g0131501 30.412 194 130 2 28 221 289 477 3.96e-25 105
Msa0794990 MtrunA17_Chr3g0135861 37.654 324 158 8 36 340 33 331 5.17e-63 204
Msa0794990 MtrunA17_Chr8g0385571 38.762 307 161 7 36 341 225 505 4.17e-60 201
Msa0794990 MtrunA17_Chr8g0385571 26.633 199 141 2 23 221 306 499 6.12e-21 93.6
Msa0794990 MtrunA17_Chr6g0488081 36.646 322 167 6 34 343 15 311 4.46e-60 195
Msa0794990 MtrunA17_Chr5g0436041 38.006 321 171 7 25 338 22 321 5.72e-58 190
Msa0794990 MtrunA17_Chr7g0240341 37.179 312 163 8 38 338 25 314 1.05e-57 189
Msa0794990 MtrunA17_Chr1g0149111 35.314 303 167 6 36 338 137 410 5.06e-53 180
Msa0794990 MtrunA17_Chr1g0149111 30.542 203 130 3 24 225 219 411 2.52e-22 97.1
Msa0794990 MtrunA17_Chr1g0149111 29.000 200 118 6 138 337 136 311 1.30e-18 86.3
Msa0794990 MtrunA17_Chr3g0137941 33.663 303 172 5 36 338 120 393 1.58e-52 178
Msa0794990 MtrunA17_Chr3g0137941 31.527 203 128 3 24 225 202 394 2.29e-24 102
Msa0794990 MtrunA17_Chr2g0296061 32.919 322 179 8 40 338 17 324 6.76e-50 169
Msa0794990 MtrunA17_Chr2g0296061 28.444 225 141 4 15 224 105 324 4.68e-22 95.1
Msa0794990 MtrunA17_Chr2g0296061 28.571 210 123 4 138 335 12 206 6.74e-22 94.7
Msa0794990 MtrunA17_Chr4g0063561 32.673 303 175 6 36 338 121 394 3.71e-48 167
Msa0794990 MtrunA17_Chr4g0063561 27.941 204 137 4 25 228 205 398 2.67e-16 79.3
Msa0794990 MtrunA17_Chr4g0063561 26.000 200 121 7 138 335 120 294 1.77e-13 70.9
Msa0794990 MtrunA17_Chr4g0067231 30.864 324 185 6 40 338 16 325 1.44e-47 163
Msa0794990 MtrunA17_Chr4g0067231 28.444 225 141 5 15 224 106 325 2.99e-20 90.1
Msa0794990 MtrunA17_Chr7g0242311 32.770 296 158 6 49 339 98 357 1.96e-45 159
Msa0794990 MtrunA17_Chr4g0006851 32.432 296 159 6 49 339 100 359 2.36e-43 154
Msa0794990 MtrunA17_Chr3g0135801 29.321 324 188 9 31 340 27 323 5.90e-34 127
Msa0794990 MtrunA17_Chr6g0488341 31.298 262 147 5 82 343 8 236 4.34e-33 123
Msa0794990 MtrunA17_Chr5g0423111 33.220 295 169 8 50 338 33 305 7.50e-32 122
Msa0794990 MtrunA17_Chr5g0423111 29.730 185 118 6 51 229 132 310 2.25e-13 70.5
Msa0794990 MtrunA17_Chr8g0382201 30.141 355 194 8 5 341 167 485 9.34e-32 124
Msa0794990 MtrunA17_Chr6g0463041 30.992 242 115 4 137 343 21 245 1.18e-31 119
Msa0794990 MtrunA17_Chr6g0463041 25.161 155 105 2 72 224 95 240 2.92e-14 71.6
Msa0794990 MtrunA17_Chr4g0000261 25.836 329 193 8 36 345 64 360 2.97e-31 120
Msa0794990 MtrunA17_Chr8g0372531 29.373 303 183 8 52 343 28 310 6.48e-30 116
Msa0794990 MtrunA17_Chr7g0269701 29.545 308 183 8 40 338 24 306 1.20e-29 115
Msa0794990 MtrunA17_Chr7g0269701 28.846 208 123 5 138 339 19 207 1.33e-16 79.3
Msa0794990 MtrunA17_Chr7g0269701 27.670 206 130 5 32 229 117 311 1.32e-12 67.8
Msa0794990 MtrunA17_Chr8g0366791 31.348 319 183 7 33 339 4 298 1.20e-29 115
Msa0794990 MtrunA17_Chr3g0115801 31.464 321 177 7 36 341 114 406 4.44e-29 115
Msa0794990 MtrunA17_Chr2g0328891 31.646 316 163 11 26 321 54 336 5.83e-28 112
Msa0794990 MtrunA17_Chr1g0195101 28.618 304 186 8 50 346 31 310 1.78e-27 109
Msa0794990 MtrunA17_Chr5g0411411 28.840 319 191 7 33 339 4 298 3.45e-27 108
Msa0794990 MtrunA17_Chr5g0431531 27.832 309 198 6 24 332 25 308 7.57e-27 108
Msa0794990 MtrunA17_Chr8g0393031 27.667 300 166 10 36 316 16 283 1.17e-26 107
Msa0794990 MtrunA17_Chr8g0393031 26.214 206 130 5 143 340 21 212 9.71e-12 65.1
Msa0794990 MtrunA17_Chr3g0088301 28.391 317 174 10 24 321 81 363 2.41e-24 102
Msa0794990 MtrunA17_Chr4g0040341 27.950 322 178 12 37 338 74 361 6.08e-23 98.2
Msa0794990 MtrunA17_Chr8g0352031 28.197 305 167 9 37 321 67 339 8.92e-23 97.8
Msa0794990 MtrunA17_Chr8g0386871 24.781 343 207 10 7 341 291 590 1.71e-22 98.6
Msa0794990 MtrunA17_Chr4g0004571 32.653 196 117 6 26 218 103 286 8.07e-22 94.0
Msa0794990 MtrunA17_Chr4g0004571 25.407 307 197 9 36 338 14 292 1.67e-18 84.7
Msa0794990 MtrunA17_Chr1g0201361 25.439 342 206 9 6 346 19 312 1.63e-21 93.6
Msa0794990 MtrunA17_Chr1g0201361 30.732 205 126 4 32 235 126 315 4.84e-18 83.6
Msa0794990 MtrunA17_Chr7g0241521 27.304 293 173 7 54 335 33 296 8.90e-21 91.3
Msa0794990 MtrunA17_Chr7g0241521 27.315 216 138 4 129 338 5 207 2.65e-17 81.3
Msa0794990 MtrunA17_Chr4g0008061 26.183 317 190 9 32 335 9 294 2.97e-20 89.7
Msa0794990 MtrunA17_Chr4g0008061 26.961 204 130 4 141 338 15 205 8.45e-15 73.9
Msa0794990 MtrunA17_Chr3g0086811 23.446 354 208 10 17 336 5 329 7.31e-20 89.4
Msa0794990 MtrunA17_Chr3g0103681 26.888 331 185 9 27 338 6 298 3.19e-19 86.7
Msa0794990 MtrunA17_Chr8g0383321 26.023 342 199 9 4 338 11 305 3.88e-19 87.0
Msa0794990 MtrunA17_Chr8g0383321 29.798 198 125 3 32 229 127 310 1.83e-18 85.1
Msa0794990 MtrunA17_Chr3g0133111 23.724 333 200 9 35 338 3 310 2.37e-17 81.6
Msa0794990 MtrunA17_Chr1g0196921 29.480 173 107 4 145 316 18 176 2.66e-17 81.3
Msa0794990 MtrunA17_Chr1g0196921 23.588 301 199 8 47 340 23 299 2.52e-15 75.5
Msa0794990 MtrunA17_Chr4g0028531 26.174 298 185 10 39 328 23 293 2.51e-15 75.9
Msa0794990 MtrunA17_Chr8g0385891 29.150 247 153 9 22 262 59 289 9.71e-15 74.3
Msa0794990 MtrunA17_Chr8g0385891 25.521 192 121 5 147 338 80 249 6.28e-14 72.0
Msa0794990 MtrunA17_Chr6g0455381 24.183 306 204 7 38 335 18 303 1.48e-14 73.6
Msa0794990 MtrunA17_Chr7g0219891 25.000 304 204 7 38 335 22 307 1.78e-14 73.2
Msa0794990 MtrunA17_Chr6g0461981 28.821 229 145 8 39 262 64 279 2.68e-14 73.2
Msa0794990 MtrunA17_Chr6g0461981 24.747 198 127 5 141 338 64 239 4.42e-14 72.4
Msa0794990 MtrunA17_Chr6g0488171 33.036 112 66 1 232 343 5 107 6.80e-14 67.4
Msa0794990 MtrunA17_Chr4g0051841 25.311 241 158 8 29 262 22 247 7.15e-14 71.6
Msa0794990 MtrunA17_Chr4g0051841 24.138 203 125 7 144 338 26 207 4.66e-12 66.2
Msa0794990 MtrunA17_Chr5g0412401 24.047 341 198 9 35 338 3 319 1.21e-13 70.9
Msa0794990 MtrunA17_Chr5g0407451 26.446 242 148 7 31 264 16 235 2.15e-13 70.1
Msa0794990 MtrunA17_Chr7g0251981 25.789 190 119 5 147 336 89 256 3.04e-13 70.1
Msa0794990 MtrunA17_Chr7g0251981 28.631 241 146 9 30 262 76 298 4.68e-13 69.3
Msa0794990 MtrunA17_Chr5g0436571 25.510 294 176 9 74 343 46 320 3.87e-13 69.3
Msa0794990 MtrunA17_Chr2g0331771 31.579 152 92 4 52 198 263 407 4.38e-13 69.7
Msa0794990 MtrunA17_Chr2g0331771 22.659 331 202 8 28 346 146 434 3.09e-11 64.3
Msa0794990 MtrunA17_Chr2g0293621 23.194 263 181 5 79 335 69 316 2.03e-12 67.4
Msa0794990 MtrunA17_Chr4g0046981 23.659 317 208 7 36 341 10 303 6.28e-12 65.5
Msa0794990 MtrunA17_Chr1g0196161 28.492 179 118 3 44 221 3 172 9.67e-12 63.2
Msa0794990 MtrunA17_Chr6g0463351 22.807 285 194 7 51 335 80 338 1.26e-11 65.1
Msa0794990 MtrunA17_Chr1g0163521 30.435 161 99 4 178 338 204 351 1.48e-11 65.1
Msa0794990 MtrunA17_Chr8g0367641 23.145 337 197 11 36 338 4 312 1.62e-11 64.3
Msa0794990 MtrunA17_Chr7g0275411 23.714 350 207 11 28 338 7 335 4.23e-11 63.5
Msa0794990 MtrunA17_Chr8g0378951 20.875 297 204 5 36 329 19 287 9.56e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0794990 AT4G01100.1 77.401 354 70 3 1 346 1 352 0.0 563
Msa0794990 AT4G01100.2 74.185 368 71 4 1 346 1 366 0.0 551
Msa0794990 AT4G01100.3 81.126 302 55 1 47 346 1 302 0.0 518
Msa0794990 AT4G26180.1 40.187 321 158 7 34 343 17 314 3.45e-65 209
Msa0794990 AT5G51050.1 38.889 324 166 7 21 341 204 498 5.95e-65 214
Msa0794990 AT5G61810.2 38.080 323 165 7 21 341 46 335 7.85e-61 198
Msa0794990 AT5G61810.1 38.390 323 164 7 21 341 189 478 1.69e-59 199
Msa0794990 AT3G53940.1 37.419 310 167 6 36 338 71 360 4.22e-59 195
Msa0794990 AT3G53940.1 33.168 202 120 6 32 229 174 364 8.22e-25 103
Msa0794990 AT3G55640.1 34.821 336 191 6 11 335 4 322 4.92e-59 194
Msa0794990 AT3G55640.4 34.821 336 191 6 11 335 4 322 4.92e-59 194
Msa0794990 AT4G26180.2 39.597 298 146 7 34 320 17 291 3.50e-58 190
Msa0794990 AT4G26180.2 28.205 195 133 2 141 335 21 208 4.86e-18 83.6
Msa0794990 AT2G37890.1 37.152 323 170 7 25 338 34 332 1.71e-57 190
Msa0794990 AT1G14560.1 37.152 323 170 6 34 343 23 325 1.09e-56 187
Msa0794990 AT5G07320.1 37.374 297 151 7 46 341 217 479 5.07e-56 190
Msa0794990 AT4G32400.1 34.323 303 170 5 36 338 112 385 7.43e-51 174
Msa0794990 AT4G32400.1 29.439 214 132 6 15 226 191 387 1.34e-17 83.6
Msa0794990 AT4G32400.1 28.283 198 118 5 138 335 111 284 1.01e-16 80.9
Msa0794990 AT5G48970.1 33.542 319 184 7 40 338 24 334 2.32e-50 171
Msa0794990 AT5G48970.1 28.571 210 123 4 138 335 19 213 5.91e-21 92.8
Msa0794990 AT5G48970.1 24.554 224 154 3 15 224 112 334 3.13e-16 79.0
Msa0794990 AT1G14560.2 37.000 300 156 6 34 320 23 302 1.71e-49 168
Msa0794990 AT1G14560.2 28.022 182 116 4 160 335 44 216 5.05e-14 72.4
Msa0794990 AT3G21390.1 31.746 315 190 6 40 336 21 328 1.77e-46 161
Msa0794990 AT3G21390.1 25.778 225 151 3 15 224 107 330 1.57e-16 79.7
Msa0794990 AT3G21390.2 31.746 315 190 6 40 336 43 350 2.72e-46 161
Msa0794990 AT3G21390.2 25.778 225 151 3 15 224 129 352 1.46e-16 80.1
Msa0794990 AT5G01500.1 33.876 307 158 8 49 346 130 400 1.69e-44 158
Msa0794990 AT3G51870.1 30.945 307 167 8 49 346 102 372 6.70e-43 153
Msa0794990 AT5G48970.2 32.593 270 167 5 76 338 2 263 2.07e-41 146
Msa0794990 AT5G48970.2 24.554 224 154 3 15 224 41 263 2.18e-16 78.6
Msa0794990 AT3G55640.2 34.118 255 149 5 13 256 6 252 3.62e-39 139
Msa0794990 AT3G55640.2 27.313 227 140 5 118 336 15 224 2.46e-16 78.2
Msa0794990 AT3G55640.3 34.118 255 149 5 13 256 6 252 3.62e-39 139
Msa0794990 AT3G55640.3 27.313 227 140 5 118 336 15 224 2.46e-16 78.2
Msa0794990 AT1G14560.3 35.909 220 115 4 137 343 21 227 1.58e-38 137
Msa0794990 AT1G14560.3 30.288 208 116 5 37 224 24 222 1.62e-24 100
Msa0794990 AT3G53940.2 35.965 228 128 5 36 256 71 287 2.03e-35 130
Msa0794990 AT3G53940.2 29.577 213 125 4 131 335 63 258 7.51e-20 88.6
Msa0794990 AT5G56450.1 29.907 321 180 8 36 338 32 325 2.48e-35 131
Msa0794990 AT3G20240.1 28.438 320 182 9 36 338 50 339 5.44e-34 128
Msa0794990 AT3G20240.1 30.964 197 118 6 39 230 164 347 6.40e-17 81.3
Msa0794990 AT5G64970.1 31.481 324 181 6 32 341 129 425 6.08e-33 127
Msa0794990 AT5G64970.2 30.794 315 177 6 41 341 14 301 7.34e-32 121
Msa0794990 AT5G66380.1 28.758 306 194 6 40 338 12 300 5.37e-31 119
Msa0794990 AT5G46800.2 29.467 319 186 7 36 339 6 300 1.20e-28 113
Msa0794990 AT5G46800.2 29.268 205 126 4 32 224 102 299 3.93e-15 75.5
Msa0794990 AT5G46800.3 29.467 319 186 7 36 339 6 300 1.20e-28 113
Msa0794990 AT5G46800.3 29.268 205 126 4 32 224 102 299 3.93e-15 75.5
Msa0794990 AT5G46800.1 29.467 319 186 7 36 339 6 300 1.20e-28 113
Msa0794990 AT5G46800.1 29.268 205 126 4 32 224 102 299 3.93e-15 75.5
Msa0794990 AT1G25380.1 30.584 291 175 6 50 334 33 302 1.00e-27 112
Msa0794990 AT1G25380.1 31.122 196 113 5 148 339 28 205 1.50e-14 74.3
Msa0794990 AT1G25380.2 30.584 291 175 6 50 334 33 302 1.00e-27 112
Msa0794990 AT1G25380.2 31.122 196 113 5 148 339 28 205 1.50e-14 74.3
Msa0794990 AT1G78180.1 32.203 354 193 12 3 341 97 418 8.12e-27 110
Msa0794990 AT2G47490.1 28.428 299 177 8 50 338 29 300 2.19e-25 104
Msa0794990 AT2G47490.1 28.342 187 112 5 157 339 33 201 2.61e-13 70.1
Msa0794990 AT2G47490.1 28.022 182 122 4 51 229 130 305 4.18e-12 66.6
Msa0794990 AT5G64970.3 30.033 303 171 6 32 320 129 404 3.00e-25 105
Msa0794990 AT5G64970.3 28.426 197 117 4 140 336 134 306 2.67e-13 70.9
Msa0794990 AT5G13490.1 26.582 316 180 8 26 321 76 359 4.36e-25 104
Msa0794990 AT5G13490.2 26.582 316 180 8 26 321 76 359 4.36e-25 104
Msa0794990 AT3G08580.2 26.582 316 180 8 26 321 72 355 5.17e-25 104
Msa0794990 AT3G08580.1 26.582 316 180 8 26 321 72 355 5.17e-25 104
Msa0794990 AT3G54110.1 28.344 314 187 8 32 335 9 294 1.18e-24 102
Msa0794990 AT3G54110.1 28.643 199 121 4 145 338 22 204 5.67e-18 83.6
Msa0794990 AT5G58970.1 28.125 320 186 9 32 338 10 298 4.55e-24 100
Msa0794990 AT2G30160.1 27.389 314 205 6 26 338 30 321 2.92e-23 99.0
Msa0794990 AT4G28390.1 29.180 305 163 11 37 321 82 353 3.00e-23 99.8
Msa0794990 AT4G28390.2 29.180 305 163 11 37 321 82 353 3.00e-23 99.8
Msa0794990 AT4G11440.1 26.752 314 191 10 29 340 329 605 5.57e-22 97.4
Msa0794990 AT4G11440.1 30.151 199 130 3 26 224 414 603 2.47e-16 80.5
Msa0794990 AT4G11440.2 26.752 314 191 10 29 340 329 605 5.57e-22 97.4
Msa0794990 AT4G11440.2 30.151 199 130 3 26 224 414 603 2.47e-16 80.5
Msa0794990 AT1G34065.1 27.476 313 178 9 27 338 71 335 7.86e-22 95.1
Msa0794990 AT1G34065.2 27.476 313 178 9 27 338 64 328 8.34e-22 95.1
Msa0794990 AT1G07030.1 26.129 310 205 6 29 338 31 316 1.06e-20 91.7
Msa0794990 AT4G39460.2 31.280 211 129 4 27 237 130 324 1.88e-20 90.9
Msa0794990 AT4G39460.2 28.435 313 175 8 27 338 47 311 2.09e-19 88.2
Msa0794990 AT4G39460.1 31.280 211 129 4 27 237 130 324 1.88e-20 90.9
Msa0794990 AT4G39460.1 28.435 313 175 8 27 338 47 311 2.09e-19 88.2
Msa0794990 AT4G39460.3 31.280 211 129 4 27 237 130 324 1.88e-20 90.9
Msa0794990 AT4G39460.3 28.435 313 175 8 27 338 47 311 2.09e-19 88.2
Msa0794990 AT5G17400.1 26.897 290 179 9 37 316 13 279 2.69e-20 90.1
Msa0794990 AT1G74240.1 22.523 333 210 7 28 336 26 334 5.50e-19 87.4
Msa0794990 AT1G74240.1 27.586 203 132 4 144 337 39 235 7.97e-12 66.2
Msa0794990 AT1G14140.1 31.667 180 109 5 140 316 15 183 6.07e-19 86.3
Msa0794990 AT1G14140.1 24.671 304 193 8 47 340 25 302 2.61e-17 81.6
Msa0794990 AT4G24570.1 24.332 337 191 7 36 338 4 310 7.69e-16 77.8
Msa0794990 AT1G74240.2 22.654 309 191 7 52 336 2 286 1.92e-15 76.6
Msa0794990 AT1G74240.2 27.749 191 123 4 156 337 3 187 7.62e-11 62.8
Msa0794990 AT3G48850.1 27.341 267 174 8 1 262 36 287 2.95e-15 76.3
Msa0794990 AT3G48850.1 23.348 227 147 6 116 338 44 247 4.93e-14 72.8
Msa0794990 AT5G01340.1 26.115 314 194 11 39 343 18 302 3.77e-15 75.5
Msa0794990 AT2G22500.1 22.124 339 194 9 36 338 4 308 6.18e-15 75.1
Msa0794990 AT2G39970.1 25.839 298 180 11 74 346 46 327 8.98e-15 74.7
Msa0794990 AT5G14040.1 25.521 192 121 5 147 338 89 258 9.09e-15 75.1
Msa0794990 AT5G14040.1 28.163 245 160 8 21 262 67 298 1.42e-11 65.5
Msa0794990 AT5G58970.2 30.348 201 119 5 145 338 20 206 1.54e-14 73.2
Msa0794990 AT5G58970.2 25.397 252 160 8 32 270 10 246 1.27e-11 64.7
Msa0794990 AT1G79900.1 25.856 263 156 8 54 313 32 258 6.41e-14 71.6
Msa0794990 AT1G79900.1 27.184 206 130 6 25 229 102 288 1.67e-11 64.7
Msa0794990 AT5G09470.1 26.136 264 160 8 81 338 98 332 1.76e-13 70.9
Msa0794990 AT4G27940.1 25.442 283 176 7 71 338 145 407 3.81e-12 67.4
Msa0794990 AT5G26200.1 24.503 302 201 7 46 335 48 334 5.05e-12 66.6
Msa0794990 AT4G03115.2 26.126 222 125 6 129 338 17 211 5.79e-12 65.1
Msa0794990 AT4G03115.4 26.562 192 111 4 150 338 47 211 6.15e-12 65.1
Msa0794990 AT1G72820.1 25.275 273 173 6 84 335 73 335 8.61e-12 65.9
Msa0794990 AT1G72820.2 25.275 273 173 6 84 335 73 335 8.61e-12 65.9
Msa0794990 AT5G42130.1 25.088 283 185 7 54 335 134 390 9.34e-12 66.2
Msa0794990 AT4G03115.1 26.562 192 111 4 150 338 47 211 1.29e-11 65.1
Msa0794990 AT4G03115.1 23.006 326 212 9 22 341 20 312 5.26e-11 63.2
Msa0794990 AT4G03115.3 26.562 192 111 4 150 338 79 243 1.66e-11 65.1
Msa0794990 AT4G03115.3 23.006 326 212 9 22 341 52 344 5.55e-11 63.5
Msa0794990 AT2G17270.1 22.930 314 198 11 31 339 17 291 6.07e-11 63.2

Find 108 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAACTTCACTGCTGAATT+TGG 0.104393 5_3:+6877105 None:intergenic
AAGGATTTCGGTACCATTTC+CGG 0.234210 5_3:+6876941 None:intergenic
CTCTTCTGCGTCTTGGAGCT+GGG 0.252032 5_3:-6876593 Msa0794990:CDS
CCTCTTCTGCGTCTTGGAGC+TGG 0.254698 5_3:-6876594 Msa0794990:CDS
TCAGCTAACCTTGACTGAAT+TGG 0.287777 5_3:+6875849 None:intergenic
CTTGCATGTGGGGCTGCTGC+TGG 0.296448 5_3:-6876063 Msa0794990:CDS
ATGCTCTTTCAACAGTCTTC+CGG 0.298234 5_3:-6876344 Msa0794990:CDS
TTCAGGGCTTAAAATATATA+TGG 0.317822 5_3:-6877188 Msa0794990:CDS
TGCTCTTTCAACAGTCTTCC+GGG 0.332019 5_3:-6876343 Msa0794990:CDS
ACTGTAAAGTATGAGGGATT+TGG 0.351570 5_3:-6875895 Msa0794990:CDS
ATGCTCTAGCGCCTTCTTCC+CGG 0.363870 5_3:+6876325 None:intergenic
AAAATACAACGGAACAGTTC+AGG 0.368272 5_3:-6877205 Msa0794990:CDS
AGAACTTCACTGCTGAATTT+GGG 0.371459 5_3:+6877106 None:intergenic
CCATTCCATTCAAGCTTCAA+TGG 0.374959 5_3:-6878812 Msa0794990:exon
AAATCACATGTCAAATCTTA+AGG 0.379134 5_3:+6875404 None:intergenic
TATCGGTTGCAAACCGGAAA+TGG 0.395097 5_3:-6876954 Msa0794990:intron
GGGGCTGCTGCTGGAACTAT+TGG 0.396252 5_3:-6876054 Msa0794990:CDS
CAGTAAAACTGTAAAGTATG+AGG 0.403490 5_3:-6875902 Msa0794990:CDS
CAGCTAACCTTGACTGAATT+GGG 0.406618 5_3:+6875850 None:intergenic
TGGGATAATACGAGCACAAT+TGG 0.409492 5_3:+6877125 None:intergenic
TATAAGAGAGAAATTAAAGC+TGG 0.410325 5_3:+6878856 None:intergenic
GGCGCTAGAGCATTGTATAA+AGG 0.419300 5_3:-6876315 Msa0794990:CDS
CTCACTCCTCTTCTGCGTCT+TGG 0.425612 5_3:-6876600 Msa0794990:CDS
GGATGGTTACCTTCAGTCAT+AGG 0.425783 5_3:-6876294 Msa0794990:CDS
AAAAGCGTGATTAGGAGGTT+TGG 0.431176 5_3:+6878723 None:intergenic
GAGATGGTCAAGGACGTTCT+AGG 0.432330 5_3:-6875472 Msa0794990:CDS
AGACGCCATTGAAGCTTGAA+TGG 0.440385 5_3:+6878807 None:intergenic
AGGGGAATGTTTAAAGGAAA+CGG 0.441281 5_3:-6877150 Msa0794990:CDS
CTTGGAGCTGGGGCATGTGC+AGG 0.442547 5_3:-6876582 Msa0794990:CDS
AGGAGGTTTGGCACCTTCAC+CGG 0.455797 5_3:+6878735 None:intergenic
ATACTGAGAAAAGCGTGATT+AGG 0.460163 5_3:+6878715 None:intergenic
GCTTCCGTTGTCACTGGTGA+CGG 0.466067 5_3:-6875964 Msa0794990:CDS
TCAACAGTCTTCCGGGAAGA+AGG 0.474429 5_3:-6876336 Msa0794990:CDS
TTAACAGTACCTGTACAGTT+AGG 0.476691 5_3:+6876511 None:intergenic
GAGATTGAAGATTCTGCTGC+AGG 0.484269 5_3:-6877522 Msa0794990:intron
CGTCCTCGCACCAGGTCCAT+CGG 0.488129 5_3:+6876534 None:intergenic
GGCACCTTCACCGGCGATTG+CGG 0.488284 5_3:+6878744 None:intergenic
CTTCCGTTGTCACTGGTGAC+GGG 0.490939 5_3:-6875963 Msa0794990:CDS
GACCACAAGGCTTGCATGTG+GGG 0.493690 5_3:-6876073 Msa0794990:CDS
GTCCTCGCACCAGGTCCATC+GGG 0.496178 5_3:+6876535 None:intergenic
GGCGCTGCTTCCGTTGTCAC+TGG 0.499991 5_3:-6875970 Msa0794990:CDS
CTTGTCGCAGGTGGAGTCGC+CGG 0.500084 5_3:-6878682 Msa0794990:CDS
AGTCTCTATCGGTTGCAAAC+CGG 0.504263 5_3:-6876960 Msa0794990:CDS
TTCTTCTGCGAATGACATCA+AGG 0.504967 5_3:+6876013 None:intergenic
ATAAGAGAGAAATTAAAGCT+GGG 0.508537 5_3:+6878857 None:intergenic
ATGCAGATGGGAGGCTGGAA+AGG 0.510793 5_3:-6875991 Msa0794990:CDS
GAAGAATGCAGATGGGAGGC+TGG 0.511460 5_3:-6875996 Msa0794990:CDS
TGTCACGAAGGCAATGGCTA+TGG 0.511840 5_3:+6875498 None:intergenic
CCAGCTCCAAGACGCAGAAG+AGG 0.514439 5_3:+6876594 None:intergenic
CGTTGTCACTGGTGACGGGA+AGG 0.519437 5_3:-6875959 Msa0794990:CDS
AAATACAACGGAACAGTTCA+GGG 0.525612 5_3:-6877204 Msa0794990:CDS
ACGATATATGATATAGATAA+CGG 0.528549 5_3:+6878886 None:intergenic
TATATGAATCTCTAAAAGAC+TGG 0.535507 5_3:-6876146 Msa0794990:CDS
GTCTCCGCAATCGCCGGTGA+AGG 0.536172 5_3:-6878748 Msa0794990:CDS
CTGAGAAAAGCGTGATTAGG+AGG 0.537877 5_3:+6878718 None:intergenic
ATCTGCAAATCTCTTGTCGC+AGG 0.542029 5_3:-6878694 Msa0794990:CDS
GTGGTATTCTAAGTCTCTAT+CGG 0.546132 5_3:-6876971 Msa0794990:CDS
CATTCGCAGAAGAATGCAGA+TGG 0.551827 5_3:-6876004 Msa0794990:CDS
TCTAAAGTCTCCGCAATCGC+CGG 0.551921 5_3:-6878754 Msa0794990:CDS
TGCAAATCTCTTGTCGCAGG+TGG 0.557858 5_3:-6878691 Msa0794990:CDS
CGCAACTTACCCGATGGACC+TGG 0.558753 5_3:-6876544 Msa0794990:CDS
GGGATTTGGAGCTTTATACA+AGG 0.559538 5_3:-6875881 Msa0794990:CDS
AGTAAAACTGTAAAGTATGA+GGG 0.564308 5_3:-6875901 Msa0794990:CDS
TTGATTAAAACAAAACCACT+TGG 0.571366 5_3:-6876123 Msa0794990:CDS
ATGGCGTCTCAAGATTCGAC+TGG 0.572142 5_3:-6878793 Msa0794990:CDS
CTTACAACTCCTATGACTGA+AGG 0.574400 5_3:+6876285 None:intergenic
AAAATTCCTCTGTATTGATG+AGG 0.577478 5_3:+6876369 None:intergenic
GTTGTCACTGGTGACGGGAA+GGG 0.578565 5_3:-6875958 Msa0794990:CDS
TTGTCTGCAGATACCGTACG+TGG 0.581757 5_3:-6876184 Msa0794990:intron
ACGAAGGCAATGGCTATGGA+AGG 0.582467 5_3:+6875502 None:intergenic
TCTTCTGCGTCTTGGAGCTG+GGG 0.588235 5_3:-6876592 Msa0794990:CDS
CTCGTATGTCACGAAGGCAA+TGG 0.590817 5_3:+6875492 None:intergenic
TTATAGTTCACGAACAGCTG+TGG 0.595117 5_3:-6877555 Msa0794990:intron
CAGAGCTAAGTGTGACCACA+AGG 0.595535 5_3:-6876086 Msa0794990:CDS
CCATTGAAGCTTGAATGGAA+TGG 0.596620 5_3:+6878812 None:intergenic
AAGTGAAACTCACACTCCAC+CGG 0.598603 5_3:+6878663 None:intergenic
CTAGAGCATTGTATAAAGGA+TGG 0.598668 5_3:-6876311 Msa0794990:CDS
AAATATATATGGAAAACTGA+GGG 0.600536 5_3:-6877177 Msa0794990:CDS
GTCGCAGGTGGAGTCGCCGG+TGG 0.605211 5_3:-6878679 Msa0794990:CDS
GTCTCAAGATTCGACTGGAA+AGG 0.605528 5_3:-6878788 Msa0794990:CDS
AGAATCTTCAATCTCTCTAG+AGG 0.605927 5_3:+6877530 None:intergenic
GGATTTGGAGCTTTATACAA+GGG 0.609484 5_3:-6875880 Msa0794990:CDS
CTTAGTACCCAATTCAGTCA+AGG 0.610354 5_3:-6875857 Msa0794990:intron
TCTTCTGCGAATGACATCAA+GGG 0.610404 5_3:+6876014 None:intergenic
AATTATTTACATAAAATCAG+TGG 0.611486 5_3:+6875286 None:intergenic
AGCCCCACATGCAAGCCTTG+TGG 0.617387 5_3:+6876071 None:intergenic
TACCCGATGGACCTGGTGCG+AGG 0.618370 5_3:-6876537 Msa0794990:CDS
TGCCTTCGTGACATACGAGA+TGG 0.618477 5_3:-6875488 Msa0794990:CDS
CTTCTGCGAATGACATCAAG+GGG 0.618902 5_3:+6876015 None:intergenic
CGCAGAAGAATGCAGATGGG+AGG 0.620203 5_3:-6876000 Msa0794990:CDS
AAAATATATATGGAAAACTG+AGG 0.621187 5_3:-6877178 Msa0794990:CDS
GAGTCTTGAGCAATTCCAAG+TGG 0.629550 5_3:+6876108 None:intergenic
TGACCACAAGGCTTGCATGT+GGG 0.632902 5_3:-6876074 Msa0794990:CDS
TAATCTTGAGTACACTGGCA+TGG 0.633949 5_3:-6875935 Msa0794990:CDS
AATGTCCGCAACTTACCCGA+TGG 0.649760 5_3:-6876550 Msa0794990:CDS
AAGGGTAATCTTGAGTACAC+TGG 0.650989 5_3:-6875940 Msa0794990:CDS
CTTCCCGTCACCAGTGACAA+CGG 0.653118 5_3:+6875960 None:intergenic
GACCATCTCGTATGTCACGA+AGG 0.657725 5_3:+6875486 None:intergenic
CGTGACATACGAGATGGTCA+AGG 0.657933 5_3:-6875482 Msa0794990:CDS
CAGGTCCATCGGGTAAGTTG+CGG 0.663278 5_3:+6876545 None:intergenic
CGAAGGCAATGGCTATGGAA+GGG 0.663950 5_3:+6875503 None:intergenic
GCATCTCCTCATCAATACAG+AGG 0.672044 5_3:-6876375 Msa0794990:CDS
TGGAACTATTGGCCAGACAG+TGG 0.674835 5_3:-6876043 Msa0794990:CDS
CGTCACAATGTAAAATACAA+CGG 0.675370 5_3:-6877216 Msa0794990:CDS
ATTCGCAGAAGAATGCAGAT+GGG 0.675451 5_3:-6876003 Msa0794990:CDS
GTGACCACAAGGCTTGCATG+TGG 0.679869 5_3:-6876075 Msa0794990:CDS
TGTCTGCAGATACCGTACGT+GGG 0.721600 5_3:-6876183 Msa0794990:intron
TTCTGCGAATGACATCAAGG+GGG 0.801026 5_3:+6876016 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATAATATAATATAATA+AGG + chr5_3:6875751-6875770 None:intergenic 0.0%
!! TATAATATAATATAATAAGG+CGG + chr5_3:6875748-6875767 None:intergenic 10.0%
!!! AATTTTTTTTTATCTGAATA+TGG - chr5_3:6877392-6877411 Msa0794990:intron 10.0%
!! ATAAAAATAAAAATAAAGTG+TGG + chr5_3:6877531-6877550 None:intergenic 10.0%
!! ATAATATAATATAATAAGGC+GGG + chr5_3:6875747-6875766 None:intergenic 15.0%
!!! GAGCTATTAATTATTTATTT+TGG - chr5_3:6875836-6875855 Msa0794990:intron 15.0%
!!! ATTAATATTTTCTCTCTATT+TGG - chr5_3:6875973-6875992 Msa0794990:CDS 15.0%
!! ATTGTATAAAAAGAGTAAAT+TGG + chr5_3:6876230-6876249 None:intergenic 15.0%
!!! CATTTTTATATGCTTAAAAT+AGG - chr5_3:6876560-6876579 Msa0794990:CDS 15.0%
!! TACATTAAATATCTAACATA+TGG + chr5_3:6876702-6876721 None:intergenic 15.0%
!! GATATTTAATGTATTAACAT+AGG - chr5_3:6876709-6876728 Msa0794990:intron 15.0%
!!! TTTTTTTTTCCATTAATCTT+TGG - chr5_3:6877132-6877151 Msa0794990:CDS 15.0%
!! GATGTATAAAAGATTATTAA+GGG + chr5_3:6877262-6877281 None:intergenic 15.0%
!! AGATGTATAAAAGATTATTA+AGG + chr5_3:6877263-6877282 None:intergenic 15.0%
!! ATAGAATATTTACTTTATCA+TGG - chr5_3:6877311-6877330 Msa0794990:intron 15.0%
!!! TTTTTATTCATATTATTGTG+AGG - chr5_3:6877464-6877483 Msa0794990:intron 15.0%
!!! TTTTATTCATATTATTGTGA+GGG - chr5_3:6877465-6877484 Msa0794990:intron 15.0%
!! ATTATTGTTTGTAGAATTTA+AGG - chr5_3:6877703-6877722 Msa0794990:intron 15.0%
!! TGAAAATGAATTAAACTTAA+TGG + chr5_3:6877758-6877777 None:intergenic 15.0%
!!! TAAGTTTAATTCATTTTCAA+TGG - chr5_3:6877759-6877778 Msa0794990:intron 15.0%
!! ATGATTTAAATCATTTATCT+AGG - chr5_3:6878403-6878422 Msa0794990:intron 15.0%
!! AAATAGTAATAGTTAAAAAG+TGG - chr5_3:6878593-6878612 Msa0794990:intron 15.0%
!! AATTATTTACATAAAATCAG+TGG + chr5_3:6878892-6878911 None:intergenic 15.0%
!! ACGATATATGATATAGATAA+CGG + chr5_3:6875292-6875311 None:intergenic 20.0%
!! ATTTAATCTCCTGATTATTT+AGG - chr5_3:6875674-6875693 Msa0794990:intron 20.0%
!! AAATACAGAAACAGAAAAAT+GGG + chr5_3:6875715-6875734 None:intergenic 20.0%
!!! CTCAAACTTTAAATGATTTT+TGG - chr5_3:6875898-6875917 Msa0794990:CDS 20.0%
!! ATAAAAAAAGTTCAAAACGT+AGG + chr5_3:6875955-6875974 None:intergenic 20.0%
!! TTTGTGAATTATGTTTCATT+TGG - chr5_3:6876412-6876431 Msa0794990:intron 20.0%
!!! TTATTTTCTCCAATGTTTAA+AGG - chr5_3:6876745-6876764 Msa0794990:intron 20.0%
!! AACAATAAACCTTTAAACAT+TGG + chr5_3:6876757-6876776 None:intergenic 20.0%
!!! TAAGATCATTTTTAAAATGC+AGG - chr5_3:6876928-6876947 Msa0794990:intron 20.0%
!! AAAATATATATGGAAAACTG+AGG - chr5_3:6876997-6877016 Msa0794990:intron 20.0%
!! AAATATATATGGAAAACTGA+GGG - chr5_3:6876998-6877017 Msa0794990:intron 20.0%
!! ACAAATTTACCAAAGATTAA+TGG + chr5_3:6877144-6877163 None:intergenic 20.0%
!!! GATTATTTTATTCTGTCAAT+TGG - chr5_3:6877345-6877364 Msa0794990:intron 20.0%
!! TTTATTCATATTATTGTGAG+GGG - chr5_3:6877466-6877485 Msa0794990:intron 20.0%
!! AGCAATTAATTAATGCAAAT+GGG + chr5_3:6878364-6878383 None:intergenic 20.0%
!! AAGCAATTAATTAATGCAAA+TGG + chr5_3:6878365-6878384 None:intergenic 20.0%
!! ATTTAAATCATTTATCTAGG+TGG - chr5_3:6878406-6878425 Msa0794990:intron 20.0%
!! TTTAAATCATTTATCTAGGT+GGG - chr5_3:6878407-6878426 Msa0794990:intron 20.0%
!! CTAAAATTCTAAATTTCTCT+AGG + chr5_3:6878470-6878489 None:intergenic 20.0%
!!! ATTTAGAATTTTAGATACAG+TGG - chr5_3:6878476-6878495 Msa0794990:intron 20.0%
!! GAACTCAAAATTCAATTTAT+AGG - chr5_3:6878567-6878586 Msa0794990:intron 20.0%
!! TAGTTAAAAAGTGGTTTATA+TGG - chr5_3:6878602-6878621 Msa0794990:intron 20.0%
! ATAAGAGAGAAATTAAAGCT+GGG + chr5_3:6875321-6875340 None:intergenic 25.0%
! TATAAGAGAGAAATTAAAGC+TGG + chr5_3:6875322-6875341 None:intergenic 25.0%
!! TATAAACCGTTGAATTTTTG+AGG - chr5_3:6875338-6875357 Msa0794990:three_prime_UTR 25.0%
! GAAATACAGAAACAGAAAAA+TGG + chr5_3:6875716-6875735 None:intergenic 25.0%
! AAAAAAAATAGATTCACACG+TGG + chr5_3:6875800-6875819 None:intergenic 25.0%
!!! GTTTTGTTATAGAAATCACT+TGG + chr5_3:6876145-6876164 None:intergenic 25.0%
! AGTGATTTCTATAACAAAAC+TGG - chr5_3:6876145-6876164 Msa0794990:CDS 25.0%
! TATATATGTACATATCGCTT+TGG + chr5_3:6876275-6876294 None:intergenic 25.0%
! TTGTATACAATCAATCTAAG+TGG - chr5_3:6876304-6876323 Msa0794990:CDS 25.0%
!!! TAGTTTTGATTTTCATCTCA+AGG + chr5_3:6876362-6876381 None:intergenic 25.0%
!! TTATGATTTTGCATTGTGAT+AGG - chr5_3:6876531-6876550 Msa0794990:CDS 25.0%
! TATGGTACTATAAGCTTAAA+GGG + chr5_3:6876684-6876703 None:intergenic 25.0%
! ATATGGTACTATAAGCTTAA+AGG + chr5_3:6876685-6876704 None:intergenic 25.0%
!! AAAGGTTTATTGTTGATTAC+TGG - chr5_3:6876763-6876782 Msa0794990:intron 25.0%
! AATGCATTTAAGAAAATGTG+CGG - chr5_3:6876840-6876859 Msa0794990:intron 25.0%
! ACTGAACAACAAGTAATATA+AGG + chr5_3:6876905-6876924 None:intergenic 25.0%
! TTCAGGGCTTAAAATATATA+TGG - chr5_3:6876987-6877006 Msa0794990:intron 25.0%
! TAAAAGATTATTAAGGGAGA+AGG + chr5_3:6877256-6877275 None:intergenic 25.0%
! ATATTTACTTTATCATGGTG+TGG - chr5_3:6877316-6877335 Msa0794990:intron 25.0%
! TGAATAAAAATGCAGATTGA+AGG + chr5_3:6877454-6877473 None:intergenic 25.0%
! TAAAAATAAAGTGTGGACAA+TGG + chr5_3:6877524-6877543 None:intergenic 25.0%
! GAAACATGAAATTAAAAGCT+TGG + chr5_3:6877957-6877976 None:intergenic 25.0%
!! TATATGAATCTCTAAAAGAC+TGG - chr5_3:6878029-6878048 Msa0794990:intron 25.0%
! TTGATTAAAACAAAACCACT+TGG - chr5_3:6878052-6878071 Msa0794990:intron 25.0%
! AGTAAAACTGTAAAGTATGA+GGG - chr5_3:6878274-6878293 Msa0794990:intron 25.0%
! TTCTATGACTAAGACAAAAT+TGG + chr5_3:6878550-6878569 None:intergenic 25.0%
! AAATCACATGTCAAATCTTA+AGG + chr5_3:6878774-6878793 None:intergenic 25.0%
ATGGAACCTCAAAAATTCAA+CGG + chr5_3:6875347-6875366 None:intergenic 30.0%
AAGAGAACGGTATAAGTATA+AGG + chr5_3:6875596-6875615 None:intergenic 30.0%
CAAACTAAAGAACTTATCGT+TGG + chr5_3:6875623-6875642 None:intergenic 30.0%
! GACATTCAAGAGTTGTTATT+TGG + chr5_3:6876077-6876096 None:intergenic 30.0%
TCCATCAATAGAGATAAGAT+TGG - chr5_3:6876461-6876480 Msa0794990:intron 30.0%
CGTCACAATGTAAAATACAA+CGG - chr5_3:6876959-6876978 Msa0794990:CDS 30.0%
AGTATAAAACAGTGATCAGA+AGG + chr5_3:6877178-6877197 None:intergenic 30.0%
! ACTGTTTTATACTAATGCAG+TGG - chr5_3:6877185-6877204 Msa0794990:CDS 30.0%
TTATTAAGGGAGAAGGATTT+CGG + chr5_3:6877249-6877268 None:intergenic 30.0%
! TCTATCTGCTTTATTAGAGT+TGG + chr5_3:6877296-6877315 None:intergenic 30.0%
!! CATTGACTTGTTATCTTTGT+TGG - chr5_3:6877732-6877751 Msa0794990:intron 30.0%
! AAAATTCCTCTGTATTGATG+AGG + chr5_3:6877809-6877828 None:intergenic 30.0%
CATGAAATTAAAAGCTTGGT+TGG + chr5_3:6877953-6877972 None:intergenic 30.0%
GAAAAATTTAAACCCACGTA+CGG + chr5_3:6878007-6878026 None:intergenic 30.0%
CAGTAAAACTGTAAAGTATG+AGG - chr5_3:6878273-6878292 Msa0794990:intron 30.0%
CAATTGCAATTCTTCTCTAA+TGG - chr5_3:6878638-6878657 Msa0794990:intron 30.0%
AATTCTTCTCTAATGGTTTC+AGG - chr5_3:6878645-6878664 Msa0794990:intron 30.0%
! ATACTGAGAAAAGCGTGATT+AGG + chr5_3:6875463-6875482 None:intergenic 35.0%
TATCGTTGGATTGAAGAGAA+CGG + chr5_3:6875609-6875628 None:intergenic 35.0%
ATGGAAAGGCCTAAATAATC+AGG + chr5_3:6875686-6875705 None:intergenic 35.0%
AAAATGGGATTCACATGGAA+AGG + chr5_3:6875700-6875719 None:intergenic 35.0%
ACAGAAAAATGGGATTCACA+TGG + chr5_3:6875705-6875724 None:intergenic 35.0%
!! TCTGTTTCTGTATTTCCTAC+CGG - chr5_3:6875720-6875739 Msa0794990:intron 35.0%
! TCTCTATTTGGATGATGATG+AGG - chr5_3:6875985-6876004 Msa0794990:CDS 35.0%
! AGTTCTGTGTGTATTTTACG+CGG - chr5_3:6876019-6876038 Msa0794990:CDS 35.0%
ATGTCAGTCTTGATTACCAA+AGG - chr5_3:6876100-6876119 Msa0794990:CDS 35.0%
! AAAGTTTGCTCTTCAACCTT+TGG + chr5_3:6876119-6876138 None:intergenic 35.0%
TGGCGTCAAAATAACAACTT+TGG - chr5_3:6876165-6876184 Msa0794990:CDS 35.0%
! TCTTATCTCTATTGATGGAC+TGG + chr5_3:6876460-6876479 None:intergenic 35.0%
GCCAATCTTATCTCTATTGA+TGG + chr5_3:6876465-6876484 None:intergenic 35.0%
! TTCAAAGATGCACTGTGTTT+TGG - chr5_3:6876507-6876526 Msa0794990:intron 35.0%
! TCAAAGATGCACTGTGTTTT+GGG - chr5_3:6876508-6876527 Msa0794990:intron 35.0%
AGAATCTTCAATCTCTCTAG+AGG + chr5_3:6876648-6876667 None:intergenic 35.0%
! TATTGTTGATTACTGGACTC+AGG - chr5_3:6876770-6876789 Msa0794990:intron 35.0%
CATTTAAGAAAATGTGCGGA+TGG - chr5_3:6876844-6876863 Msa0794990:intron 35.0%
AAACTGAAATTCATACTCCC+TGG + chr5_3:6876879-6876898 None:intergenic 35.0%
AAAATACAACGGAACAGTTC+AGG - chr5_3:6876970-6876989 Msa0794990:CDS 35.0%
AAATACAACGGAACAGTTCA+GGG - chr5_3:6876971-6876990 Msa0794990:CDS 35.0%
! TATGGAAAACTGAGGGTTTT+AGG - chr5_3:6877005-6877024 Msa0794990:intron 35.0%
! ATGGAAAACTGAGGGTTTTA+GGG - chr5_3:6877006-6877025 Msa0794990:intron 35.0%
!!! GGTTTTAGGGGAATGTTTAA+AGG - chr5_3:6877019-6877038 Msa0794990:intron 35.0%
AGGGGAATGTTTAAAGGAAA+CGG - chr5_3:6877025-6877044 Msa0794990:intron 35.0%
AGAACTTCACTGCTGAATTT+GGG + chr5_3:6877072-6877091 None:intergenic 35.0%
AAGAACTTCACTGCTGAATT+TGG + chr5_3:6877073-6877092 None:intergenic 35.0%
GTGGTATTCTAAGTCTCTAT+CGG - chr5_3:6877204-6877223 Msa0794990:CDS 35.0%
TCGAGCTAACAACTTGAATA+TGG + chr5_3:6877426-6877445 None:intergenic 35.0%
TACCTACCTTTCAAACTTCA+AGG - chr5_3:6877492-6877511 Msa0794990:intron 35.0%
! ACATAGCCTTGAAGTTTGAA+AGG + chr5_3:6877501-6877520 None:intergenic 35.0%
TTAACAGTACCTGTACAGTT+AGG + chr5_3:6877667-6877686 None:intergenic 35.0%
!! CTAGAGCATTGTATAAAGGA+TGG - chr5_3:6877864-6877883 Msa0794990:intron 35.0%
ACTGTAAAGTATGAGGGATT+TGG - chr5_3:6878280-6878299 Msa0794990:intron 35.0%
! GGATTTGGAGCTTTATACAA+GGG - chr5_3:6878295-6878314 Msa0794990:intron 35.0%
AATCATTTATCTAGGTGGGT+AGG - chr5_3:6878411-6878430 Msa0794990:intron 35.0%
ACTGCAAGGAAACAAAAACA+CGG - chr5_3:6878507-6878526 Msa0794990:intron 35.0%
CCATTGAAGCTTGAATGGAA+TGG + chr5_3:6875366-6875385 None:intergenic 40.0%
CCATTCCATTCAAGCTTCAA+TGG - chr5_3:6875363-6875382 Msa0794990:three_prime_UTR 40.0%
! AAAAGCGTGATTAGGAGGTT+TGG + chr5_3:6875455-6875474 None:intergenic 40.0%
!! CTGTTTCTGTATTTCCTACC+GGG - chr5_3:6875721-6875740 Msa0794990:intron 40.0%
ATAATATAATAAGGCGGGCC+CGG + chr5_3:6875742-6875761 None:intergenic 40.0%
! GTGCATCTTTGAAAATCAGC+TGG + chr5_3:6876500-6876519 None:intergenic 40.0%
TTATAGTTCACGAACAGCTG+TGG - chr5_3:6876620-6876639 Msa0794990:intron 40.0%
TAAGAAAATGTGCGGATGGA+TGG - chr5_3:6876848-6876867 Msa0794990:intron 40.0%
!! TGGAAAACTGAGGGTTTTAG+GGG - chr5_3:6877007-6877026 Msa0794990:intron 40.0%
TGGGATAATACGAGCACAAT+TGG + chr5_3:6877053-6877072 None:intergenic 40.0%
AAACAGTGATCAGAAGGACA+TGG + chr5_3:6877172-6877191 None:intergenic 40.0%
AAGGATTTCGGTACCATTTC+CGG + chr5_3:6877237-6877256 None:intergenic 40.0%
AGCCTTGAAGTTTGAAAGGT+AGG + chr5_3:6877497-6877516 None:intergenic 40.0%
ATGCTCTTTCAACAGTCTTC+CGG - chr5_3:6877831-6877850 Msa0794990:intron 40.0%
CTTACAACTCCTATGACTGA+AGG + chr5_3:6877893-6877912 None:intergenic 40.0%
TCTTCTGCGAATGACATCAA+GGG + chr5_3:6878164-6878183 None:intergenic 40.0%
TTCTTCTGCGAATGACATCA+AGG + chr5_3:6878165-6878184 None:intergenic 40.0%
ATTCGCAGAAGAATGCAGAT+GGG - chr5_3:6878172-6878191 Msa0794990:intron 40.0%
AAGGGTAATCTTGAGTACAC+TGG - chr5_3:6878235-6878254 Msa0794990:intron 40.0%
TAATCTTGAGTACACTGGCA+TGG - chr5_3:6878240-6878259 Msa0794990:intron 40.0%
! GGGATTTGGAGCTTTATACA+AGG - chr5_3:6878294-6878313 Msa0794990:intron 40.0%
CTTAGTACCCAATTCAGTCA+AGG - chr5_3:6878318-6878337 Msa0794990:intron 40.0%
CAGCTAACCTTGACTGAATT+GGG + chr5_3:6878328-6878347 None:intergenic 40.0%
TCAGCTAACCTTGACTGAAT+TGG + chr5_3:6878329-6878348 None:intergenic 40.0%
CAGTGGTATATGAAACTGCA+AGG - chr5_3:6878493-6878512 Msa0794990:intron 40.0%
CTGCAAGGAAACAAAAACAC+GGG - chr5_3:6878508-6878527 Msa0794990:intron 40.0%
TGCAAGGAAACAAAAACACG+GGG - chr5_3:6878509-6878528 Msa0794990:intron 40.0%
TCTTCTCTAATGGTTTCAGG+TGG - chr5_3:6878648-6878667 Msa0794990:intron 40.0%
AGACGCCATTGAAGCTTGAA+TGG + chr5_3:6875371-6875390 None:intergenic 45.0%
GTCTCAAGATTCGACTGGAA+AGG - chr5_3:6875387-6875406 Msa0794990:three_prime_UTR 45.0%
! CTGAGAAAAGCGTGATTAGG+AGG + chr5_3:6875460-6875479 None:intergenic 45.0%
ATCTGCAAATCTCTTGTCGC+AGG - chr5_3:6875481-6875500 Msa0794990:CDS 45.0%
AAGTGAAACTCACACTCCAC+CGG + chr5_3:6875515-6875534 None:intergenic 45.0%
! TGTATTTTACGCGGTGTCTC+TGG - chr5_3:6876028-6876047 Msa0794990:CDS 45.0%
!!! GACTGGTTTAGACGTGCTTT+TGG + chr5_3:6876443-6876462 None:intergenic 45.0%
GAGATTGAAGATTCTGCTGC+AGG - chr5_3:6876653-6876672 Msa0794990:intron 45.0%
! AGTCTCTATCGGTTGCAAAC+CGG - chr5_3:6877215-6877234 Msa0794990:CDS 45.0%
! TATCGGTTGCAAACCGGAAA+TGG - chr5_3:6877221-6877240 Msa0794990:CDS 45.0%
GCATCTCCTCATCAATACAG+AGG - chr5_3:6877800-6877819 Msa0794990:intron 45.0%
TGCTCTTTCAACAGTCTTCC+GGG - chr5_3:6877832-6877851 Msa0794990:intron 45.0%
!! GGCGCTAGAGCATTGTATAA+AGG - chr5_3:6877860-6877879 Msa0794990:intron 45.0%
GGATGGTTACCTTCAGTCAT+AGG - chr5_3:6877881-6877900 Msa0794990:intron 45.0%
GAGTCTTGAGCAATTCCAAG+TGG + chr5_3:6878070-6878089 None:intergenic 45.0%
TTCTGCGAATGACATCAAGG+GGG + chr5_3:6878162-6878181 None:intergenic 45.0%
CTTCTGCGAATGACATCAAG+GGG + chr5_3:6878163-6878182 None:intergenic 45.0%
CATTCGCAGAAGAATGCAGA+TGG - chr5_3:6878171-6878190 Msa0794990:intron 45.0%
ATGGCGTCTCAAGATTCGAC+TGG - chr5_3:6875382-6875401 Msa0794990:three_prime_UTR 50.0%
! TCTAAAGTCTCCGCAATCGC+CGG - chr5_3:6875421-6875440 Msa0794990:three_prime_UTR 50.0%
TGCAAATCTCTTGTCGCAGG+TGG - chr5_3:6875484-6875503 Msa0794990:CDS 50.0%
AAAATGTGCGGATGGATGGC+AGG - chr5_3:6876852-6876871 Msa0794990:intron 50.0%
AATGTCCGCAACTTACCCGA+TGG - chr5_3:6877625-6877644 Msa0794990:intron 50.0%
TCAACAGTCTTCCGGGAAGA+AGG - chr5_3:6877839-6877858 Msa0794990:intron 50.0%
TTGTCTGCAGATACCGTACG+TGG - chr5_3:6877991-6878010 Msa0794990:intron 50.0%
TGTCTGCAGATACCGTACGT+GGG - chr5_3:6877992-6878011 Msa0794990:intron 50.0%
CAGAGCTAAGTGTGACCACA+AGG - chr5_3:6878089-6878108 Msa0794990:intron 50.0%
TGACCACAAGGCTTGCATGT+GGG - chr5_3:6878101-6878120 Msa0794990:intron 50.0%
TGGAACTATTGGCCAGACAG+TGG - chr5_3:6878132-6878151 Msa0794990:intron 50.0%
CGAAGGCAATGGCTATGGAA+GGG + chr5_3:6878675-6878694 None:intergenic 50.0%
ACGAAGGCAATGGCTATGGA+AGG + chr5_3:6878676-6878695 None:intergenic 50.0%
TGTCACGAAGGCAATGGCTA+TGG + chr5_3:6878680-6878699 None:intergenic 50.0%
CTCGTATGTCACGAAGGCAA+TGG + chr5_3:6878686-6878705 None:intergenic 50.0%
TGCCTTCGTGACATACGAGA+TGG - chr5_3:6878687-6878706 Msa0794990:CDS 50.0%
GACCATCTCGTATGTCACGA+AGG + chr5_3:6878692-6878711 None:intergenic 50.0%
CGTGACATACGAGATGGTCA+AGG - chr5_3:6878693-6878712 Msa0794990:CDS 50.0%
GAGATGGTCAAGGACGTTCT+AGG - chr5_3:6878703-6878722 Msa0794990:CDS 50.0%
AGGAGGTTTGGCACCTTCAC+CGG + chr5_3:6875443-6875462 None:intergenic 55.0%
TATAATAAGGCGGGCCCGGT+AGG + chr5_3:6875738-6875757 None:intergenic 55.0%
CTCACTCCTCTTCTGCGTCT+TGG - chr5_3:6877575-6877594 Msa0794990:intron 55.0%
CTCTTCTGCGTCTTGGAGCT+GGG - chr5_3:6877582-6877601 Msa0794990:intron 55.0%
TCTTCTGCGTCTTGGAGCTG+GGG - chr5_3:6877583-6877602 Msa0794990:intron 55.0%
CAGGTCCATCGGGTAAGTTG+CGG + chr5_3:6877633-6877652 None:intergenic 55.0%
ATGCTCTAGCGCCTTCTTCC+CGG + chr5_3:6877853-6877872 None:intergenic 55.0%
GTGACCACAAGGCTTGCATG+TGG - chr5_3:6878100-6878119 Msa0794990:intron 55.0%
GACCACAAGGCTTGCATGTG+GGG - chr5_3:6878102-6878121 Msa0794990:intron 55.0%
CGCAGAAGAATGCAGATGGG+AGG - chr5_3:6878175-6878194 Msa0794990:intron 55.0%
GAAGAATGCAGATGGGAGGC+TGG - chr5_3:6878179-6878198 Msa0794990:intron 55.0%
ATGCAGATGGGAGGCTGGAA+AGG - chr5_3:6878184-6878203 Msa0794990:intron 55.0%
GCTTCCGTTGTCACTGGTGA+CGG - chr5_3:6878211-6878230 Msa0794990:intron 55.0%
CTTCCGTTGTCACTGGTGAC+GGG - chr5_3:6878212-6878231 Msa0794990:intron 55.0%
CTTCCCGTCACCAGTGACAA+CGG + chr5_3:6878218-6878237 None:intergenic 55.0%
!! GTTGTCACTGGTGACGGGAA+GGG - chr5_3:6878217-6878236 Msa0794990:intron 55.0%
CCAGCTCCAAGACGCAGAAG+AGG + chr5_3:6877584-6877603 None:intergenic 60.0%
CCTCTTCTGCGTCTTGGAGC+TGG - chr5_3:6877581-6877600 Msa0794990:intron 60.0%
CGCAACTTACCCGATGGACC+TGG - chr5_3:6877631-6877650 Msa0794990:intron 60.0%
GCGAGGACGCCTAACTGTAC+AGG - chr5_3:6877655-6877674 Msa0794990:intron 60.0%
AGCCCCACATGCAAGCCTTG+TGG + chr5_3:6878107-6878126 None:intergenic 60.0%
GGGGCTGCTGCTGGAACTAT+TGG - chr5_3:6878121-6878140 Msa0794990:intron 60.0%
! CAAGGGGGTATGCCACTGTC+TGG + chr5_3:6878147-6878166 None:intergenic 60.0%
!! CGTTGTCACTGGTGACGGGA+AGG - chr5_3:6878216-6878235 Msa0794990:intron 60.0%
GTCTCCGCAATCGCCGGTGA+AGG - chr5_3:6875427-6875446 Msa0794990:three_prime_UTR 65.0%
GGCACCTTCACCGGCGATTG+CGG + chr5_3:6875434-6875453 None:intergenic 65.0%
CTTGTCGCAGGTGGAGTCGC+CGG - chr5_3:6875493-6875512 Msa0794990:CDS 65.0%
TGCGGATGGATGGCAGGTCC+AGG - chr5_3:6876858-6876877 Msa0794990:intron 65.0%
GCGGATGGATGGCAGGTCCA+GGG - chr5_3:6876859-6876878 Msa0794990:intron 65.0%
CTTGGAGCTGGGGCATGTGC+AGG - chr5_3:6877593-6877612 Msa0794990:intron 65.0%
TACCCGATGGACCTGGTGCG+AGG - chr5_3:6877638-6877657 Msa0794990:intron 65.0%
GTCCTCGCACCAGGTCCATC+GGG + chr5_3:6877643-6877662 None:intergenic 65.0%
CGTCCTCGCACCAGGTCCAT+CGG + chr5_3:6877644-6877663 None:intergenic 65.0%
CAGTTAGGCGTCCTCGCACC+AGG + chr5_3:6877652-6877671 None:intergenic 65.0%
CTTGCATGTGGGGCTGCTGC+TGG - chr5_3:6878112-6878131 Msa0794990:intron 65.0%
GGCGCTGCTTCCGTTGTCAC+TGG - chr5_3:6878205-6878224 Msa0794990:intron 65.0%
GTCGCAGGTGGAGTCGCCGG+TGG - chr5_3:6875496-6875515 Msa0794990:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 6875271 6878926 6875271 ID=Msa0794990;Name=Msa0794990
chr5_3 mRNA 6875271 6878926 6875271 ID=Msa0794990-mRNA-1;Parent=Msa0794990;Name=Msa0794990-mRNA-1;_AED=0.17;_eAED=0.17;_QI=111|1|1|1|1|1|8|176|346
chr5_3 exon 6875271 6875530 6875271 ID=Msa0794990-mRNA-1:exon:2811;Parent=Msa0794990-mRNA-1
chr5_3 exon 6875858 6876196 6875858 ID=Msa0794990-mRNA-1:exon:2810;Parent=Msa0794990-mRNA-1
chr5_3 exon 6876290 6876403 6876290 ID=Msa0794990-mRNA-1:exon:2809;Parent=Msa0794990-mRNA-1
chr5_3 exon 6876521 6876633 6876521 ID=Msa0794990-mRNA-1:exon:2808;Parent=Msa0794990-mRNA-1
chr5_3 exon 6876955 6876992 6876955 ID=Msa0794990-mRNA-1:exon:2807;Parent=Msa0794990-mRNA-1
chr5_3 exon 6877084 6877247 6877084 ID=Msa0794990-mRNA-1:exon:2806;Parent=Msa0794990-mRNA-1
chr5_3 exon 6877523 6877571 6877523 ID=Msa0794990-mRNA-1:exon:2805;Parent=Msa0794990-mRNA-1
chr5_3 exon 6878676 6878926 6878676 ID=Msa0794990-mRNA-1:exon:2804;Parent=Msa0794990-mRNA-1
chr5_3 five_prime_UTR 6878816 6878926 6878816 ID=Msa0794990-mRNA-1:five_prime_utr;Parent=Msa0794990-mRNA-1
chr5_3 CDS 6878676 6878815 6878676 ID=Msa0794990-mRNA-1:cds;Parent=Msa0794990-mRNA-1
chr5_3 CDS 6877523 6877571 6877523 ID=Msa0794990-mRNA-1:cds;Parent=Msa0794990-mRNA-1
chr5_3 CDS 6877084 6877247 6877084 ID=Msa0794990-mRNA-1:cds;Parent=Msa0794990-mRNA-1
chr5_3 CDS 6876955 6876992 6876955 ID=Msa0794990-mRNA-1:cds;Parent=Msa0794990-mRNA-1
chr5_3 CDS 6876521 6876633 6876521 ID=Msa0794990-mRNA-1:cds;Parent=Msa0794990-mRNA-1
chr5_3 CDS 6876290 6876403 6876290 ID=Msa0794990-mRNA-1:cds;Parent=Msa0794990-mRNA-1
chr5_3 CDS 6875858 6876196 6875858 ID=Msa0794990-mRNA-1:cds;Parent=Msa0794990-mRNA-1
chr5_3 CDS 6875447 6875530 6875447 ID=Msa0794990-mRNA-1:cds;Parent=Msa0794990-mRNA-1
chr5_3 three_prime_UTR 6875271 6875446 6875271 ID=Msa0794990-mRNA-1:three_prime_utr;Parent=Msa0794990-mRNA-1
Gene Sequence

>Msa0794990

ATGGCGTCTCAAGATTCGACTGGAAAGGCAAATGATCAGTCTAAAGTCTCCGCAATCGCCGGTGAAGGTGCCAAACCTCCTAATCACGCTTTTCTCAGTATCTGCAAATCTCTTGTCGCAGGTGGAGTCGCCGGTGGAGTTTCACGAACAGCTGTGGCTCCTCTAGAGAGATTGAAGATTCTGCTGCAGGTTCAAAATCGTCACAATGTAAAATACAACGGAACAGTTCAGGGCTTAAAATATATATGGAAAACTGAGGGTTTTAGGGGAATGTTTAAAGGAAACGGAACCAATTGTGCTCGTATTATCCCAAATTCAGCAGTGAAGTTCTTTAGCTATGAGCAAGCATCTAATGGTATTCTAAGTCTCTATCGGTTGCAAACCGGAAATGAAGAAGCTCAACTCACTCCTCTTCTGCGTCTTGGAGCTGGGGCATGTGCAGGAATCATTGCAATGTCCGCAACTTACCCGATGGACCTGGTGCGAGGACGCCTAACTGTACAGACAGAAGCATCTCCTCATCAATACAGAGGAATTTTTAATGCTCTTTCAACAGTCTTCCGGGAAGAAGGCGCTAGAGCATTGTATAAAGGATGGTTACCTTCAGTCATAGGAGTTATACCGTACGTGGGTTTAAATTTTTCTGTATATGAATCTCTAAAAGACTGGTTGATTAAAACAAAACCACTTGGAATTGCTCAAGACTCAGAGCTAAGTGTGACCACAAGGCTTGCATGTGGGGCTGCTGCTGGAACTATTGGCCAGACAGTGGCATACCCCCTTGATGTCATTCGCAGAAGAATGCAGATGGGAGGCTGGAAAGGCGCTGCTTCCGTTGTCACTGGTGACGGGAAGGGTAATCTTGAGTACACTGGCATGGTTGATGCATTCAGTAAAACTGTAAAGTATGAGGGATTTGGAGCTTTATACAAGGGCTTAGTACCCAATTCAGTCAAGGTGGTCCCTTCCATAGCCATTGCCTTCGTGACATACGAGATGGTCAAGGACGTTCTAGGAGTTGAAATGAGAATATCTGACTGA
Protein sequence

>Msa0794990

MASQDSTGKANDQSKVSAIAGEGAKPPNHAFLSICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNRHNVKYNGTVQGLKYIWKTEGFRGMFKGNGTNCARIIPNSAVKFFSYEQASNGILSLYRLQTGNEEAQLTPLLRLGAGACAGIIAMSATYPMDLVRGRLTVQTEASPHQYRGIFNALSTVFREEGARALYKGWLPSVIGVIPYVGLNFSVYESLKDWLIKTKPLGIAQDSELSVTTRLACGAAAGTIGQTVAYPLDVIRRRMQMGGWKGAASVVTGDGKGNLEYTGMVDAFSKTVKYEGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDVLGVEMRISD*