AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0831080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0831080 MtrunA17_Chr5g0396801 98.438 256 4 0 1 256 91 346 0.0 518
Msa0831080 MtrunA17_Chr5g0396801 29.187 209 135 4 41 248 28 224 1.78e-20 89.0
Msa0831080 MtrunA17_Chr8g0347451 86.434 258 33 1 1 256 104 361 2.25e-167 466
Msa0831080 MtrunA17_Chr8g0347451 30.348 201 123 4 51 248 51 237 1.27e-22 95.1
Msa0831080 MtrunA17_Chr7g0252401 38.039 255 126 5 1 251 256 482 3.61e-51 173
Msa0831080 MtrunA17_Chr7g0252401 28.283 198 121 5 51 247 207 384 4.55e-16 77.4
Msa0831080 MtrunA17_Chr3g0131501 40.079 252 128 7 1 251 254 483 6.68e-48 165
Msa0831080 MtrunA17_Chr3g0131501 29.082 196 114 4 54 247 208 380 1.18e-17 82.0
Msa0831080 MtrunA17_Chr3g0135861 35.581 267 133 6 1 250 87 331 1.69e-47 160
Msa0831080 MtrunA17_Chr3g0135861 28.141 199 127 5 54 245 38 227 1.03e-15 75.5
Msa0831080 MtrunA17_Chr8g0385571 38.095 252 133 6 1 251 276 505 3.95e-45 158
Msa0831080 MtrunA17_Chr8g0385571 27.835 194 119 4 54 247 230 402 3.57e-14 71.6
Msa0831080 MtrunA17_Chr5g0436041 37.903 248 137 4 1 248 91 321 1.67e-44 152
Msa0831080 MtrunA17_Chr5g0436041 29.245 212 123 5 44 246 27 220 1.48e-12 66.2
Msa0831080 MtrunA17_Chr7g0240341 36.111 252 135 6 1 248 85 314 8.01e-44 150
Msa0831080 MtrunA17_Chr7g0240341 27.189 217 131 5 40 246 14 213 3.35e-16 76.6
Msa0831080 MtrunA17_Chr6g0488081 33.585 265 140 5 1 253 71 311 1.70e-42 147
Msa0831080 MtrunA17_Chr6g0488081 27.692 195 134 2 51 245 19 206 6.51e-15 73.2
Msa0831080 MtrunA17_Chr1g0149111 33.468 248 140 4 1 248 188 410 2.17e-41 146
Msa0831080 MtrunA17_Chr1g0149111 27.206 136 91 2 1 135 283 411 1.63e-13 69.7
Msa0831080 MtrunA17_Chr3g0137941 32.661 248 142 4 1 248 171 393 1.86e-40 144
Msa0831080 MtrunA17_Chr3g0137941 27.941 136 90 2 1 135 266 394 3.46e-14 71.6
Msa0831080 MtrunA17_Chr7g0242311 32.258 248 132 5 2 249 146 357 3.28e-37 134
Msa0831080 MtrunA17_Chr7g0242311 33.158 190 96 5 65 248 101 265 2.38e-20 89.0
Msa0831080 MtrunA17_Chr2g0296061 31.783 258 152 6 1 248 81 324 1.03e-36 132
Msa0831080 MtrunA17_Chr2g0296061 28.095 210 124 4 48 245 12 206 5.11e-22 93.2
Msa0831080 MtrunA17_Chr4g0063561 31.452 248 144 5 1 248 173 394 9.31e-36 131
Msa0831080 MtrunA17_Chr4g0067231 29.845 258 157 5 1 248 82 325 1.03e-34 127
Msa0831080 MtrunA17_Chr4g0067231 26.244 221 133 5 40 245 2 207 1.39e-20 89.0
Msa0831080 MtrunA17_Chr4g0006851 31.855 248 133 5 2 249 148 359 1.32e-33 125
Msa0831080 MtrunA17_Chr4g0006851 33.854 192 96 6 63 248 101 267 1.76e-19 86.7
Msa0831080 MtrunA17_Chr6g0463041 30.579 242 116 4 47 253 21 245 6.95e-32 117
Msa0831080 MtrunA17_Chr6g0463041 23.529 136 93 2 1 134 114 240 5.06e-11 61.2
Msa0831080 MtrunA17_Chr6g0488341 30.435 253 143 6 1 253 17 236 5.84e-30 112
Msa0831080 MtrunA17_Chr4g0000261 27.007 274 153 7 1 255 115 360 1.28e-26 106
Msa0831080 MtrunA17_Chr8g0372531 31.405 242 138 7 20 253 89 310 2.30e-26 104
Msa0831080 MtrunA17_Chr8g0372531 30.928 194 114 5 66 256 29 205 8.81e-19 84.0
Msa0831080 MtrunA17_Chr5g0423111 31.225 253 147 7 1 248 75 305 9.71e-24 98.2
Msa0831080 MtrunA17_Chr5g0423111 27.374 179 114 4 67 245 37 199 1.79e-12 66.2
Msa0831080 MtrunA17_Chr3g0135801 28.016 257 151 8 1 250 94 323 3.90e-23 95.9
Msa0831080 MtrunA17_Chr8g0366791 32.685 257 141 6 1 249 66 298 9.97e-23 94.4
Msa0831080 MtrunA17_Chr8g0366791 28.218 202 127 6 51 246 9 198 6.70e-15 72.8
Msa0831080 MtrunA17_Chr8g0382201 29.740 269 144 6 1 251 244 485 8.78e-22 94.0
Msa0831080 MtrunA17_Chr8g0382201 26.020 196 121 4 50 245 194 365 2.25e-13 69.3
Msa0831080 MtrunA17_Chr7g0269701 27.490 251 156 6 1 248 79 306 2.89e-21 90.9
Msa0831080 MtrunA17_Chr7g0269701 28.922 204 120 5 48 245 19 203 5.94e-17 79.0
Msa0831080 MtrunA17_Chr1g0195101 26.848 257 164 6 1 256 77 310 4.98e-21 90.1
Msa0831080 MtrunA17_Chr1g0195101 27.027 185 110 5 67 245 35 200 1.34e-13 69.3
Msa0831080 MtrunA17_Chr5g0411411 28.794 257 151 6 1 249 66 298 1.11e-19 86.3
Msa0831080 MtrunA17_Chr5g0411411 29.412 204 126 6 51 248 9 200 2.30e-15 74.3
Msa0831080 MtrunA17_Chr2g0328891 31.020 245 122 10 1 231 125 336 2.17e-19 86.3
Msa0831080 MtrunA17_Chr8g0386871 26.693 251 154 6 1 251 370 590 8.19e-19 85.5
Msa0831080 MtrunA17_Chr1g0196921 29.480 173 107 4 55 226 18 176 5.95e-18 81.3
Msa0831080 MtrunA17_Chr1g0196921 26.368 201 129 4 54 250 114 299 7.44e-15 72.8
Msa0831080 MtrunA17_Chr7g0241521 27.315 216 138 4 39 248 5 207 6.81e-18 81.3
Msa0831080 MtrunA17_Chr7g0241521 29.843 191 109 4 58 245 128 296 8.39e-17 78.2
Msa0831080 MtrunA17_Chr3g0115801 29.057 265 151 5 1 251 165 406 7.98e-18 82.0
Msa0831080 MtrunA17_Chr3g0115801 26.904 197 120 4 50 246 115 287 6.72e-15 73.6
Msa0831080 MtrunA17_Chr5g0431531 28.821 229 138 6 14 242 105 308 2.37e-17 80.1
Msa0831080 MtrunA17_Chr5g0431531 28.125 192 114 4 54 245 42 209 1.55e-14 72.0
Msa0831080 MtrunA17_Chr4g0008061 29.439 214 121 7 38 245 105 294 9.16e-17 78.2
Msa0831080 MtrunA17_Chr4g0008061 27.500 200 126 4 55 248 19 205 2.37e-15 74.3
Msa0831080 MtrunA17_Chr3g0103681 28.358 201 124 4 55 248 19 206 1.62e-15 74.7
Msa0831080 MtrunA17_Chr3g0103681 29.730 185 105 4 67 248 136 298 1.42e-14 72.0
Msa0831080 MtrunA17_Chr1g0201361 24.609 256 161 5 1 256 89 312 1.69e-15 74.7
Msa0831080 MtrunA17_Chr1g0201361 32.877 146 87 3 1 145 180 315 1.04e-11 63.9
Msa0831080 MtrunA17_Chr1g0201361 25.521 192 104 3 54 245 54 206 3.25e-11 62.4
Msa0831080 MtrunA17_Chr6g0461981 25.253 198 126 5 51 248 64 239 2.71e-15 74.3
Msa0831080 MtrunA17_Chr8g0393031 24.686 239 135 8 1 226 77 283 4.40e-15 73.6
Msa0831080 MtrunA17_Chr3g0086811 28.780 205 125 6 54 246 31 226 5.05e-15 73.6
Msa0831080 MtrunA17_Chr3g0086811 28.659 164 100 3 86 246 180 329 4.00e-13 68.2
Msa0831080 MtrunA17_Chr8g0385891 25.888 197 124 5 52 248 75 249 8.21e-15 73.2
Msa0831080 MtrunA17_Chr3g0088301 27.049 244 133 8 1 231 152 363 2.90e-14 71.6
Msa0831080 MtrunA17_Chr6g0488171 33.036 112 66 1 142 253 5 107 3.45e-14 67.0
Msa0831080 MtrunA17_Chr4g0004571 25.397 252 160 8 1 248 65 292 3.50e-14 70.9
Msa0831080 MtrunA17_Chr7g0251981 26.425 193 120 5 52 244 84 254 6.18e-14 70.5
Msa0831080 MtrunA17_Chr3g0133111 26.180 233 148 7 23 248 95 310 7.46e-14 70.1
Msa0831080 MtrunA17_Chr8g0383321 25.806 248 152 6 1 248 90 305 1.25e-13 69.3
Msa0831080 MtrunA17_Chr8g0383321 31.655 139 86 2 1 139 181 310 2.78e-12 65.5
Msa0831080 MtrunA17_Chr7g0219891 25.381 197 130 5 46 241 18 198 3.04e-13 68.2
Msa0831080 MtrunA17_Chr4g0040341 26.336 262 145 11 1 248 134 361 3.38e-13 68.6
Msa0831080 MtrunA17_Chr4g0051841 24.000 200 128 6 51 248 30 207 1.06e-12 66.6
Msa0831080 MtrunA17_Chr8g0352031 26.531 245 134 8 1 231 127 339 1.14e-12 67.0
Msa0831080 MtrunA17_Chr5g0436571 31.325 166 96 6 88 253 173 320 4.27e-12 65.1
Msa0831080 MtrunA17_Chr1g0163521 30.435 161 99 4 88 248 204 351 6.58e-12 64.7
Msa0831080 MtrunA17_Chr2g0331771 26.425 193 116 5 67 256 265 434 1.25e-11 63.9
Msa0831080 MtrunA17_Chr5g0407451 26.977 215 125 7 39 248 6 193 1.26e-11 63.5
Msa0831080 MtrunA17_Chr4g0028531 30.102 196 113 7 50 238 115 293 1.57e-11 63.2
Msa0831080 MtrunA17_Chr4g0028531 25.701 214 131 8 40 248 11 201 6.90e-11 61.2
Msa0831080 MtrunA17_Chr8g0367641 27.119 177 109 5 73 248 155 312 2.62e-11 62.8
Msa0831080 MtrunA17_Chr5g0412401 26.389 216 138 6 38 248 120 319 4.96e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0831080 AT4G01100.3 80.620 258 48 1 1 256 45 302 5.04e-157 438
Msa0831080 AT4G01100.3 29.474 190 119 5 62 248 1 178 8.92e-19 84.0
Msa0831080 AT4G01100.1 80.620 258 48 1 1 256 95 352 1.57e-156 439
Msa0831080 AT4G01100.1 29.353 201 125 5 51 248 42 228 3.48e-20 88.6
Msa0831080 AT4G01100.2 76.103 272 49 2 1 256 95 366 1.06e-151 427
Msa0831080 AT4G01100.2 28.372 215 123 5 51 248 42 242 3.75e-18 83.2
Msa0831080 AT5G51050.1 36.653 251 135 4 1 251 272 498 7.50e-47 163
Msa0831080 AT5G51050.1 27.411 197 120 6 53 247 225 400 5.03e-14 71.6
Msa0831080 AT4G26180.1 37.121 264 133 6 1 253 73 314 6.53e-46 156
Msa0831080 AT4G26180.1 27.692 195 134 2 51 245 21 208 1.13e-17 81.3
Msa0831080 AT3G53940.1 37.097 248 139 4 1 248 130 360 7.42e-46 157
Msa0831080 AT3G53940.1 28.972 214 127 4 40 245 62 258 2.68e-19 86.3
Msa0831080 AT3G53940.1 34.266 143 80 5 1 139 232 364 3.58e-15 74.7
Msa0831080 AT3G55640.1 36.735 245 138 4 1 245 95 322 3.68e-45 154
Msa0831080 AT3G55640.1 26.840 231 136 6 28 246 15 224 5.74e-16 76.6
Msa0831080 AT3G55640.4 36.735 245 138 4 1 245 95 322 3.68e-45 154
Msa0831080 AT3G55640.4 26.840 231 136 6 28 246 15 224 5.74e-16 76.6
Msa0831080 AT2G37890.1 37.549 253 131 7 1 248 102 332 8.19e-45 154
Msa0831080 AT2G37890.1 29.577 213 123 6 42 245 36 230 1.52e-16 78.2
Msa0831080 AT1G14560.1 34.586 266 142 5 1 253 79 325 8.35e-45 154
Msa0831080 AT1G14560.1 28.022 182 116 4 70 245 44 216 3.66e-14 71.6
Msa0831080 AT5G61810.2 34.661 251 135 4 1 251 114 335 2.74e-42 147
Msa0831080 AT5G61810.2 28.155 206 121 6 42 247 58 236 2.55e-15 74.7
Msa0831080 AT5G07320.1 35.458 251 131 6 2 251 259 479 2.92e-42 150
Msa0831080 AT5G07320.1 27.660 188 112 4 60 247 218 381 6.93e-16 77.0
Msa0831080 AT5G61810.1 35.060 251 134 4 1 251 257 478 5.19e-41 147
Msa0831080 AT5G61810.1 28.155 206 121 6 42 247 201 379 4.03e-15 74.7
Msa0831080 AT4G32400.1 32.661 248 142 4 1 248 163 385 1.69e-39 141
Msa0831080 AT4G32400.1 28.283 198 118 5 48 245 111 284 4.59e-17 80.1
Msa0831080 AT4G32400.1 26.619 139 94 2 1 138 258 389 5.43e-12 65.5
Msa0831080 AT1G14560.3 35.455 220 116 4 47 253 21 227 7.01e-39 135
Msa0831080 AT1G14560.3 30.000 140 83 2 1 134 92 222 4.03e-18 81.3
Msa0831080 AT4G26180.2 36.100 241 121 6 1 230 73 291 9.12e-39 137
Msa0831080 AT4G26180.2 27.604 192 132 2 54 245 24 208 6.01e-18 81.6
Msa0831080 AT1G14560.2 34.156 243 128 5 1 230 79 302 1.28e-37 134
Msa0831080 AT1G14560.2 28.022 182 116 4 70 245 44 216 2.16e-14 72.0
Msa0831080 AT5G01500.1 34.363 259 130 7 2 256 178 400 2.41e-36 133
Msa0831080 AT5G01500.1 31.771 192 100 5 63 248 131 297 5.02e-19 85.9
Msa0831080 AT5G48970.2 30.980 255 161 5 1 248 17 263 1.00e-35 128
Msa0831080 AT5G48970.2 29.032 155 95 3 91 245 3 142 4.77e-15 73.2
Msa0831080 AT5G48970.1 30.980 255 161 5 1 248 88 334 7.74e-35 127
Msa0831080 AT5G48970.1 28.095 210 124 4 48 245 19 213 5.28e-21 90.9
Msa0831080 AT3G51870.1 30.116 259 141 7 2 256 150 372 3.52e-34 127
Msa0831080 AT3G51870.1 34.010 197 99 6 63 253 103 274 5.33e-21 91.3
Msa0831080 AT3G21390.1 30.040 253 163 5 1 246 83 328 3.28e-33 123
Msa0831080 AT3G21390.1 27.228 202 122 4 54 245 22 208 2.49e-19 86.3
Msa0831080 AT3G21390.2 30.040 253 163 5 1 246 105 350 3.71e-33 124
Msa0831080 AT3G21390.2 27.094 203 123 4 53 245 43 230 3.05e-19 86.3
Msa0831080 AT3G20240.1 29.389 262 148 6 1 248 101 339 1.02e-28 112
Msa0831080 AT5G66380.1 30.472 233 141 5 20 248 85 300 6.84e-27 106
Msa0831080 AT5G66380.1 32.323 198 116 4 53 248 12 193 3.03e-19 85.5
Msa0831080 AT3G55640.2 36.145 166 98 3 1 166 95 252 3.30e-25 100
Msa0831080 AT3G55640.2 26.840 231 136 6 28 246 15 224 1.59e-16 77.0
Msa0831080 AT3G55640.3 36.145 166 98 3 1 166 95 252 3.30e-25 100
Msa0831080 AT3G55640.3 26.840 231 136 6 28 246 15 224 1.59e-16 77.0
Msa0831080 AT5G56450.1 29.020 255 147 7 1 248 98 325 9.57e-25 100
Msa0831080 AT5G64970.2 29.811 265 149 5 1 251 60 301 7.01e-23 95.5
Msa0831080 AT5G64970.2 32.653 147 80 3 100 246 55 182 1.30e-11 63.9
Msa0831080 AT3G53940.2 34.940 166 100 3 1 166 130 287 2.94e-22 93.6
Msa0831080 AT3G53940.2 29.108 213 126 4 41 245 63 258 8.27e-20 86.7
Msa0831080 AT5G64970.1 29.811 265 149 5 1 251 184 425 3.79e-22 95.1
Msa0831080 AT5G64970.1 27.919 197 118 4 50 246 134 306 5.59e-13 68.6
Msa0831080 AT1G25380.1 31.313 198 118 5 64 256 134 318 2.86e-21 91.7
Msa0831080 AT1G25380.1 31.016 187 107 5 67 249 37 205 4.01e-16 77.4
Msa0831080 AT1G25380.2 31.313 198 118 5 64 256 134 318 2.86e-21 91.7
Msa0831080 AT1G25380.2 31.016 187 107 5 67 249 37 205 4.01e-16 77.4
Msa0831080 AT5G46800.2 29.615 260 148 6 1 249 65 300 7.44e-21 89.7
Msa0831080 AT5G46800.2 27.586 203 134 5 51 248 8 202 8.40e-12 64.3
Msa0831080 AT5G46800.3 29.615 260 148 6 1 249 65 300 7.44e-21 89.7
Msa0831080 AT5G46800.3 27.586 203 134 5 51 248 8 202 8.40e-12 64.3
Msa0831080 AT5G46800.1 29.615 260 148 6 1 249 65 300 7.44e-21 89.7
Msa0831080 AT5G46800.1 27.586 203 134 5 51 248 8 202 8.40e-12 64.3
Msa0831080 AT1G14140.1 31.818 176 106 5 54 226 19 183 2.32e-19 85.9
Msa0831080 AT1G14140.1 25.591 254 162 6 1 250 72 302 8.75e-16 75.9
Msa0831080 AT3G54110.1 28.643 199 121 4 55 248 22 204 7.59e-19 84.3
Msa0831080 AT3G54110.1 30.769 195 111 5 54 245 121 294 4.07e-18 82.4
Msa0831080 AT2G47490.1 29.570 186 115 4 64 248 130 300 1.37e-18 83.6
Msa0831080 AT2G47490.1 28.415 183 109 5 67 245 33 197 1.10e-13 70.1
Msa0831080 AT5G58970.1 32.143 196 104 5 58 248 127 298 5.82e-18 82.0
Msa0831080 AT5G58970.1 29.500 200 122 4 55 248 20 206 4.05e-15 73.9
Msa0831080 AT1G78180.1 31.203 266 144 9 1 251 177 418 7.69e-18 82.8
Msa0831080 AT4G11440.1 26.984 252 156 8 1 250 380 605 1.14e-17 82.4
Msa0831080 AT4G11440.2 26.984 252 156 8 1 250 380 605 1.14e-17 82.4
Msa0831080 AT5G14040.1 25.758 198 125 5 51 248 83 258 9.27e-16 76.3
Msa0831080 AT1G34065.2 27.083 192 101 3 54 245 78 230 1.86e-15 75.1
Msa0831080 AT1G34065.2 26.104 249 150 7 1 248 113 328 1.04e-13 70.1
Msa0831080 AT1G34065.1 27.083 192 101 3 54 245 85 237 2.36e-15 75.1
Msa0831080 AT1G34065.1 26.104 249 150 7 1 248 120 335 1.40e-13 69.7
Msa0831080 AT5G58970.2 30.348 201 119 5 55 248 20 206 2.79e-15 73.9
Msa0831080 AT2G30160.1 27.966 236 147 6 14 248 108 321 8.43e-15 73.2
Msa0831080 AT2G30160.1 26.943 193 117 3 53 245 44 212 3.24e-13 68.6
Msa0831080 AT5G64970.3 27.869 244 139 5 1 230 184 404 8.71e-15 73.6
Msa0831080 AT5G64970.3 27.919 197 118 4 50 246 134 306 5.61e-13 68.6
Msa0831080 AT1G79900.1 27.041 196 119 4 53 248 112 283 1.30e-14 72.4
Msa0831080 AT5G13490.1 25.306 245 137 7 1 231 147 359 1.97e-14 72.4
Msa0831080 AT5G13490.2 25.306 245 137 7 1 231 147 359 1.97e-14 72.4
Msa0831080 AT3G48850.1 22.907 227 148 6 26 248 44 247 4.62e-14 71.2
Msa0831080 AT5G17400.1 24.783 230 146 7 1 226 73 279 6.32e-14 70.5
Msa0831080 AT4G39460.2 28.112 249 145 6 1 248 96 311 6.98e-14 70.5
Msa0831080 AT4G39460.2 32.653 147 90 2 1 147 187 324 2.09e-13 69.3
Msa0831080 AT4G39460.2 27.225 191 100 3 54 244 61 212 1.47e-11 63.9
Msa0831080 AT4G39460.1 28.112 249 145 6 1 248 96 311 6.98e-14 70.5
Msa0831080 AT4G39460.1 32.653 147 90 2 1 147 187 324 2.09e-13 69.3
Msa0831080 AT4G39460.1 27.225 191 100 3 54 244 61 212 1.47e-11 63.9
Msa0831080 AT4G39460.3 28.112 249 145 6 1 248 96 311 6.98e-14 70.5
Msa0831080 AT4G39460.3 32.653 147 90 2 1 147 187 324 2.09e-13 69.3
Msa0831080 AT4G39460.3 27.225 191 100 3 54 244 61 212 1.47e-11 63.9
Msa0831080 AT1G07030.1 27.234 235 147 6 14 248 106 316 7.73e-14 70.5
Msa0831080 AT1G07030.1 28.502 207 120 7 53 256 42 223 1.16e-12 67.0
Msa0831080 AT2G39970.1 30.220 182 107 8 77 256 164 327 9.22e-14 70.5
Msa0831080 AT2G22500.1 28.313 166 102 4 84 248 159 308 2.53e-13 68.9
Msa0831080 AT4G28390.1 27.755 245 130 10 1 231 142 353 3.23e-13 68.9
Msa0831080 AT4G28390.2 27.755 245 130 10 1 231 142 353 3.23e-13 68.9
Msa0831080 AT4G24570.1 26.267 217 131 5 38 248 117 310 3.68e-13 68.6
Msa0831080 AT3G08580.2 24.490 245 139 7 1 231 143 355 5.46e-13 68.2
Msa0831080 AT3G08580.1 24.490 245 139 7 1 231 143 355 5.46e-13 68.2
Msa0831080 AT4G03115.4 26.562 192 111 4 60 248 47 211 1.54e-12 65.5
Msa0831080 AT1G74240.1 26.829 164 100 3 86 246 188 334 1.76e-12 66.6
Msa0831080 AT1G74240.1 27.586 203 132 4 54 247 39 235 3.50e-12 65.9
Msa0831080 AT4G03115.2 26.562 192 111 4 60 248 47 211 1.89e-12 65.5
Msa0831080 AT1G74240.2 26.829 164 100 3 86 246 140 286 1.99e-12 66.2
Msa0831080 AT1G74240.2 27.749 191 123 4 66 247 3 187 3.06e-11 62.8
Msa0831080 AT5G01340.1 29.048 210 126 7 50 253 110 302 2.96e-12 65.9
Msa0831080 AT4G03115.1 26.562 192 111 4 60 248 47 211 3.56e-12 65.5
Msa0831080 AT4G03115.3 26.562 192 111 4 60 248 79 243 4.30e-12 65.5
Msa0831080 AT5G09470.1 27.442 215 124 9 44 248 140 332 3.21e-11 62.8

Find 95 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAACTTCACTGCTGAATT+TGG 0.104393 5_4:-4105195 None:intergenic
AAGGATTTCGGTACCATTTC+CGG 0.234210 5_4:-4105359 None:intergenic
TCAGCTAACCTTGACTGAAT+TGG 0.287777 5_4:-4106451 None:intergenic
CTTGCATGTGGGGCTGCTGC+TGG 0.296448 5_4:+4106237 Msa0831080:CDS
ATGCTCTTTCAACAGTCTTC+CGG 0.298234 5_4:+4105956 Msa0831080:CDS
TTCAGGGCTTAAAATATATA+TGG 0.317822 5_4:+4105112 Msa0831080:five_prime_UTR
TGCTCTTTCAACAGTCTTCC+GGG 0.332019 5_4:+4105957 Msa0831080:CDS
CTCTTCTGCGTCTTGGAGGT+GGG 0.337736 5_4:+4105707 Msa0831080:CDS
ACTGTAAAGTATGAGGGATT+TGG 0.351570 5_4:+4106405 Msa0831080:CDS
ATGCTCTAGCGCCTTCTTCC+CGG 0.363870 5_4:-4105975 None:intergenic
AAAATACAACGGAACAGTTC+AGG 0.368272 5_4:+4105095 Msa0831080:five_prime_UTR
AGAACTTCACTGCTGAATTT+GGG 0.371459 5_4:-4105194 None:intergenic
AAATCACATGTCAAATCTTA+AGG 0.379134 5_4:-4106896 None:intergenic
TATCGGTTGCAAACCGGAAA+TGG 0.395097 5_4:+4105346 Msa0831080:CDS
GGGGCTGCTGCTGGAACTAT+TGG 0.396252 5_4:+4106246 Msa0831080:CDS
CCTCTTCTGCGTCTTGGAGG+TGG 0.401652 5_4:+4105706 Msa0831080:CDS
CAGTAAAACTGTAAAGTATG+AGG 0.403490 5_4:+4106398 Msa0831080:CDS
CAGCTAACCTTGACTGAATT+GGG 0.406618 5_4:-4106450 None:intergenic
TGGGATAATACGAGCACAAT+TGG 0.409492 5_4:-4105175 None:intergenic
GGCGCTAGAGCATTGTATAA+AGG 0.419300 5_4:+4105985 Msa0831080:CDS
CTCACTCCTCTTCTGCGTCT+TGG 0.425612 5_4:+4105700 Msa0831080:CDS
GCTTCCGTTGTCACTGGTGA+TGG 0.425707 5_4:+4106336 Msa0831080:CDS
GGATGGTTACCTTCAGTCAT+AGG 0.425783 5_4:+4106006 Msa0831080:CDS
GAGATGGTCAAGGACGTTCT+AGG 0.432330 5_4:+4106828 Msa0831080:CDS
AGGGGAATGTTTAAAGGAAA+CGG 0.441281 5_4:+4105150 Msa0831080:exon
CTTGGAGGTGGGGCATGTGC+AGG 0.452142 5_4:+4105718 Msa0831080:CDS
ATACTGAGAAAAGCGTGATT+AGG 0.460163 5_4:-4103574 None:intergenic
TCAACAGTCTTCCGGGAAGA+AGG 0.474429 5_4:+4105964 Msa0831080:CDS
TTAACAGTACCTGTACAGTT+AGG 0.476691 5_4:-4105789 None:intergenic
ACTCCTCTTCTGCGTCTTGG+AGG 0.478152 5_4:+4105703 Msa0831080:CDS
GAGATTGAAGATTCTGCTGC+AGG 0.484269 5_4:+4104783 Msa0831080:five_prime_UTR
CGTCCTCGCACCAGGTCCAT+CGG 0.488129 5_4:-4105766 None:intergenic
GACCACAAGGCTTGCATGTG+GGG 0.493690 5_4:+4106227 Msa0831080:CDS
GTCCTCGCACCAGGTCCATC+GGG 0.496178 5_4:-4105765 None:intergenic
GGCGCTGCTTCCGTTGTCAC+TGG 0.499991 5_4:+4106330 Msa0831080:CDS
CTTGTCGCAGGTGGAGTCGC+CGG 0.500084 5_4:+4103607 Msa0831080:five_prime_UTR
AGTCTCTATCGGTTGCAAAC+CGG 0.504263 5_4:+4105340 Msa0831080:CDS
TTCTTCTGCGAATGACATCA+AGG 0.504967 5_4:-4106287 None:intergenic
CGTTGTCACTGGTGATGGGA+AGG 0.506085 5_4:+4106341 Msa0831080:CDS
ATGCAGATGGGAGGCTGGAA+AGG 0.510793 5_4:+4106309 Msa0831080:CDS
GAAGAATGCAGATGGGAGGC+TGG 0.511460 5_4:+4106304 Msa0831080:CDS
TGTCACGAAGGCAATGGCTA+TGG 0.511840 5_4:-4106802 None:intergenic
CTTCCGTTGTCACTGGTGAT+GGG 0.512692 5_4:+4106337 Msa0831080:CDS
AAATACAACGGAACAGTTCA+GGG 0.525612 5_4:+4105096 Msa0831080:five_prime_UTR
TATATGAATCTCTAAAAGAC+TGG 0.535507 5_4:+4106154 Msa0831080:CDS
ATCTGCAAATCTCTTGTCGC+AGG 0.542029 5_4:+4103595 Msa0831080:five_prime_UTR
GTGGTATTCTAAGTCTCTAT+CGG 0.546132 5_4:+4105329 Msa0831080:intron
TCTTCTGCGTCTTGGAGGTG+GGG 0.546986 5_4:+4105708 Msa0831080:CDS
CATTCGCAGAAGAATGCAGA+TGG 0.551827 5_4:+4106296 Msa0831080:CDS
TGCAAATCTCTTGTCGCAGG+TGG 0.557858 5_4:+4103598 Msa0831080:five_prime_UTR
CGCAACTTACCCGATGGACC+TGG 0.558753 5_4:+4105756 Msa0831080:CDS
CCACCTCCAAGACGCAGAAG+AGG 0.558893 5_4:-4105706 None:intergenic
GGGATTTGGAGCTTTATACA+AGG 0.559538 5_4:+4106419 Msa0831080:CDS
AGTAAAACTGTAAAGTATGA+GGG 0.564308 5_4:+4106399 Msa0831080:CDS
TTGATTAAAACAAAACCACT+TGG 0.571366 5_4:+4106177 Msa0831080:CDS
CTTACAACTCCTATGACTGA+AGG 0.574400 5_4:-4106015 None:intergenic
AAAATTCCTCTGTATTGATG+AGG 0.577478 5_4:-4105931 None:intergenic
TTGTCTGCAGATACCGTACG+TGG 0.581757 5_4:+4106116 Msa0831080:intron
ACGAAGGCAATGGCTATGGA+AGG 0.582467 5_4:-4106798 None:intergenic
CTCGTATGTCACGAAGGCAA+TGG 0.590817 5_4:-4106808 None:intergenic
TTATAGTTCACGAACAGCTG+TGG 0.595117 5_4:+4104750 Msa0831080:intron
CAGAGCTAAGTGTGACCACA+AGG 0.595535 5_4:+4106214 Msa0831080:CDS
AAGTGAAACTCACACTCCAC+CGG 0.598603 5_4:-4103626 None:intergenic
CTAGAGCATTGTATAAAGGA+TGG 0.598668 5_4:+4105989 Msa0831080:CDS
AAATATATATGGAAAACTGA+GGG 0.600536 5_4:+4105123 Msa0831080:five_prime_UTR
GTTGTCACTGGTGATGGGAA+GGG 0.601889 5_4:+4106342 Msa0831080:CDS
GTCGCAGGTGGAGTCGCCGG+TGG 0.605211 5_4:+4103610 Msa0831080:five_prime_UTR
AGAATCTTCAATCTCTCTAG+AGG 0.605927 5_4:-4104775 None:intergenic
GGATTTGGAGCTTTATACAA+GGG 0.609484 5_4:+4106420 Msa0831080:CDS
CTTAGTACCCAATTCAGTCA+AGG 0.610354 5_4:+4106443 Msa0831080:CDS
TCTTCTGCGAATGACATCAA+GGG 0.610404 5_4:-4106286 None:intergenic
AATTATTTACATAAAATCAG+TGG 0.611486 5_4:-4107013 None:intergenic
AGCCCCACATGCAAGCCTTG+TGG 0.617387 5_4:-4106229 None:intergenic
TACCCGATGGACCTGGTGCG+AGG 0.618370 5_4:+4105763 Msa0831080:CDS
TGCCTTCGTGACATACGAGA+TGG 0.618477 5_4:+4106812 Msa0831080:CDS
CTTCTGCGAATGACATCAAG+GGG 0.618902 5_4:-4106285 None:intergenic
CGCAGAAGAATGCAGATGGG+AGG 0.620203 5_4:+4106300 Msa0831080:CDS
AAAATATATATGGAAAACTG+AGG 0.621187 5_4:+4105122 Msa0831080:five_prime_UTR
GAGTCTTGAGCAATTCCAAG+TGG 0.629550 5_4:-4106192 None:intergenic
TGACCACAAGGCTTGCATGT+GGG 0.632902 5_4:+4106226 Msa0831080:CDS
TAATCTTGAGTACACTGGCA+TGG 0.633949 5_4:+4106365 Msa0831080:CDS
AAGGGTAATCTTGAGTACAC+TGG 0.648550 5_4:+4106360 Msa0831080:CDS
AATGTCCGCAACTTACCCGA+TGG 0.649760 5_4:+4105750 Msa0831080:CDS
CTTCCCATCACCAGTGACAA+CGG 0.650735 5_4:-4106340 None:intergenic
GACCATCTCGTATGTCACGA+AGG 0.657725 5_4:-4106814 None:intergenic
CGTGACATACGAGATGGTCA+AGG 0.657933 5_4:+4106818 Msa0831080:CDS
CAGGTCCATCGGGTAAGTTG+CGG 0.663278 5_4:-4105755 None:intergenic
CGAAGGCAATGGCTATGGAA+GGG 0.663950 5_4:-4106797 None:intergenic
GCATCTCCTCATCAATACAG+AGG 0.672044 5_4:+4105925 Msa0831080:CDS
TGGAACTATTGGCCAGACAG+TGG 0.674835 5_4:+4106257 Msa0831080:CDS
CGTCACAATGTAAAATACAA+CGG 0.675370 5_4:+4105084 Msa0831080:five_prime_UTR
ATTCGCAGAAGAATGCAGAT+GGG 0.675451 5_4:+4106297 Msa0831080:CDS
GTGACCACAAGGCTTGCATG+TGG 0.679869 5_4:+4106225 Msa0831080:CDS
TGTCTGCAGATACCGTACGT+GGG 0.721600 5_4:+4106117 Msa0831080:intron
TTCTGCGAATGACATCAAGG+GGG 0.801026 5_4:-4106284 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATAATATAATATAATA+AGG - chr5_4:4103873-4103892 None:intergenic 0.0%
!! TATAATATAATATAATAAGG+CGG - chr5_4:4103870-4103889 None:intergenic 10.0%
!!! AATTTTTTTTTATCTGAATA+TGG + chr5_4:4105517-4105536 Msa0831080:intron 10.0%
!! ATAAAAATAAAAATAAAGTG+TGG - chr5_4:4105656-4105675 None:intergenic 10.0%
!! ATTTAATCTTCTGATTATTT+AGG + chr5_4:4103796-4103815 Msa0831080:intron 15.0%
!! ATAATATAATATAATAAGGC+GGG - chr5_4:4103869-4103888 None:intergenic 15.0%
!!! GAGCTATTAATTATTTATTT+TGG + chr5_4:4103963-4103982 Msa0831080:intron 15.0%
!! ATAAAAAAAGTTCAAAATGT+AGG - chr5_4:4104099-4104118 None:intergenic 15.0%
!!! ATTAATATTTTCTCTCTATT+TGG + chr5_4:4104117-4104136 Msa0831080:intron 15.0%
!! ATTGTATAAAAAGAGTAAAT+TGG - chr5_4:4104365-4104384 None:intergenic 15.0%
!!! CATTTTTATATGCTTAAAAT+AGG + chr5_4:4104690-4104709 Msa0831080:intron 15.0%
!! GATATTTAATGTATTAACAT+AGG + chr5_4:4104837-4104856 Msa0831080:intron 15.0%
!!! TTTTTTTTTCCATTAATCTT+TGG + chr5_4:4105257-4105276 Msa0831080:intron 15.0%
!! GATGTATAAAAGATTATTAA+GGG - chr5_4:4105387-4105406 None:intergenic 15.0%
!! AGATGTATAAAAGATTATTA+AGG - chr5_4:4105388-4105407 None:intergenic 15.0%
!! ATAGAATATTTACTTTATCA+TGG + chr5_4:4105436-4105455 Msa0831080:intron 15.0%
!!! TTTTTATTCATATTATTGTG+AGG + chr5_4:4105589-4105608 Msa0831080:intron 15.0%
!!! TTTTATTCATATTATTGTGA+GGG + chr5_4:4105590-4105609 Msa0831080:intron 15.0%
!! ATTATTGTTTGTAGAATTTA+AGG + chr5_4:4105828-4105847 Msa0831080:intron 15.0%
!! TGAAAATGAATTAAACTTAA+TGG - chr5_4:4105883-4105902 None:intergenic 15.0%
!!! TAAGTTTAATTCATTTTCAA+TGG + chr5_4:4105884-4105903 Msa0831080:intron 15.0%
!! ATGATTTAAATCATTTATCT+AGG + chr5_4:4106528-4106547 Msa0831080:intron 15.0%
!! AAATAGTAATAGTTAAAAAG+TGG + chr5_4:4106718-4106737 Msa0831080:intron 15.0%
!! AATTATTTACATAAAATCAG+TGG - chr5_4:4107016-4107035 None:intergenic 15.0%
!! AAATACAGAAACAGAAAAAT+GGG - chr5_4:4103837-4103856 None:intergenic 20.0%
!!! CTCAAACTTTAAATGATTTT+TGG + chr5_4:4104042-4104061 Msa0831080:intron 20.0%
!! TTTGTGAATTATGTTTCATT+TGG + chr5_4:4104543-4104562 Msa0831080:intron 20.0%
!!! AACCTTTAAAGTTTAAACAT+TGG - chr5_4:4104885-4104904 None:intergenic 20.0%
!!! TAAGATCATTTTTAAAATGC+AGG + chr5_4:4105053-4105072 Msa0831080:intron 20.0%
!! AAAATATATATGGAAAACTG+AGG + chr5_4:4105122-4105141 Msa0831080:five_prime_UTR 20.0%
!! AAATATATATGGAAAACTGA+GGG + chr5_4:4105123-4105142 Msa0831080:five_prime_UTR 20.0%
!! ACAAATTTACCAAAGATTAA+TGG - chr5_4:4105269-4105288 None:intergenic 20.0%
!!! GATTATTTTATTCTGTCAAT+TGG + chr5_4:4105470-4105489 Msa0831080:intron 20.0%
!! TTTATTCATATTATTGTGAG+GGG + chr5_4:4105591-4105610 Msa0831080:intron 20.0%
!! AGCAATTAATTAATGCAAAT+GGG - chr5_4:4106489-4106508 None:intergenic 20.0%
!! AAGCAATTAATTAATGCAAA+TGG - chr5_4:4106490-4106509 None:intergenic 20.0%
!! ATTTAAATCATTTATCTAGG+TGG + chr5_4:4106531-4106550 Msa0831080:intron 20.0%
!! TTTAAATCATTTATCTAGGT+GGG + chr5_4:4106532-4106551 Msa0831080:intron 20.0%
!! CTAAAATTCTAAATTTCTCT+AGG - chr5_4:4106595-4106614 None:intergenic 20.0%
!!! ATTTAGAATTTTAGATACAG+TGG + chr5_4:4106601-4106620 Msa0831080:intron 20.0%
!! GAACACAAAATTCAATTTAT+AGG + chr5_4:4106692-4106711 Msa0831080:intron 20.0%
!! TAGTTAAAAAGTGGTTTATA+TGG + chr5_4:4106727-4106746 Msa0831080:intron 20.0%
! GAAATACAGAAACAGAAAAA+TGG - chr5_4:4103838-4103857 None:intergenic 25.0%
! AAAAAAAATAGATTCACACG+TGG - chr5_4:4103932-4103951 None:intergenic 25.0%
! GTTCAAAATGTAGGTTTATA+TGG - chr5_4:4104090-4104109 None:intergenic 25.0%
!!! GTTTTGTTATAGAAATCACT+TGG - chr5_4:4104280-4104299 None:intergenic 25.0%
! AGTGATTTCTATAACAAAAC+TGG + chr5_4:4104280-4104299 Msa0831080:intron 25.0%
! TTGTATACAATCAATCTAAG+TGG + chr5_4:4104435-4104454 Msa0831080:intron 25.0%
!!! TAGTTTTGATTTTCATCTCA+AGG - chr5_4:4104493-4104512 None:intergenic 25.0%
!! TTATGATTTTGCATTGTGAT+AGG + chr5_4:4104661-4104680 Msa0831080:intron 25.0%
! ACATGTTACTATAAGCTTAA+AGG - chr5_4:4104815-4104834 None:intergenic 25.0%
! CTCCAATGTTTAAACTTTAA+AGG + chr5_4:4104880-4104899 Msa0831080:intron 25.0%
!! AAAGGTTTATTGTTGATTAC+TGG + chr5_4:4104898-4104917 Msa0831080:intron 25.0%
! AATGCATTTAAGAAAATGTG+TGG + chr5_4:4104975-4104994 Msa0831080:intron 25.0%
! ACTGAACAACAAGTAATATA+AGG - chr5_4:4105030-4105049 None:intergenic 25.0%
! TTCAGGGCTTAAAATATATA+TGG + chr5_4:4105112-4105131 Msa0831080:five_prime_UTR 25.0%
! TAAAAGATTATTAAGGGAGA+AGG - chr5_4:4105381-4105400 None:intergenic 25.0%
! ATATTTACTTTATCATGGTG+TGG + chr5_4:4105441-4105460 Msa0831080:intron 25.0%
! TGAATAAAAATGCAGATTGA+AGG - chr5_4:4105579-4105598 None:intergenic 25.0%
! TAAAAATAAAGTGTGGACAA+TGG - chr5_4:4105649-4105668 None:intergenic 25.0%
! GAAACATGAAATTAAAAGCT+TGG - chr5_4:4106082-4106101 None:intergenic 25.0%
!! TATATGAATCTCTAAAAGAC+TGG + chr5_4:4106154-4106173 Msa0831080:CDS 25.0%
! TTGATTAAAACAAAACCACT+TGG + chr5_4:4106177-4106196 Msa0831080:CDS 25.0%
! AGTAAAACTGTAAAGTATGA+GGG + chr5_4:4106399-4106418 Msa0831080:CDS 25.0%
! TTCTATGACTAAGACAAAAT+TGG - chr5_4:4106675-4106694 None:intergenic 25.0%
! AAATCACATGTCAAATCTTA+AGG - chr5_4:4106899-4106918 None:intergenic 25.0%
AAGAGAACGGTATAAGTATA+AGG - chr5_4:4103713-4103732 None:intergenic 30.0%
CAAACTAAAGAACTTATCGT+TGG - chr5_4:4103740-4103759 None:intergenic 30.0%
! GACATTCAAGAGTTGTTATT+TGG - chr5_4:4104221-4104240 None:intergenic 30.0%
! TTCAGACCAAAGTTGTTATT+TGG - chr5_4:4104309-4104328 None:intergenic 30.0%
TATCTATGTACATATCGCTT+TGG - chr5_4:4104410-4104429 None:intergenic 30.0%
CATTTAAGAAAATGTGTGGA+TGG + chr5_4:4104979-4104998 Msa0831080:intron 30.0%
CGTCACAATGTAAAATACAA+CGG + chr5_4:4105084-4105103 Msa0831080:five_prime_UTR 30.0%
AGTATAAAACAGTGATCAGA+AGG - chr5_4:4105303-4105322 None:intergenic 30.0%
! ACTGTTTTATACTAATGCAG+TGG + chr5_4:4105310-4105329 Msa0831080:intron 30.0%
TTATTAAGGGAGAAGGATTT+CGG - chr5_4:4105374-4105393 None:intergenic 30.0%
! TCTATCTGCTTTATTAGAGT+TGG - chr5_4:4105421-4105440 None:intergenic 30.0%
!! CATTGACTTGTTATCTTTGT+TGG + chr5_4:4105857-4105876 Msa0831080:intron 30.0%
! AAAATTCCTCTGTATTGATG+AGG - chr5_4:4105934-4105953 None:intergenic 30.0%
CATGAAATTAAAAGCTTGGT+TGG - chr5_4:4106078-4106097 None:intergenic 30.0%
GAAAAATTTAAACCCACGTA+CGG - chr5_4:4106132-4106151 None:intergenic 30.0%
CAGTAAAACTGTAAAGTATG+AGG + chr5_4:4106398-4106417 Msa0831080:CDS 30.0%
ATTGCAAGGAAACAAAAACA+CGG + chr5_4:4106632-4106651 Msa0831080:intron 30.0%
CAATTGCAATTCTTCTCTAA+TGG + chr5_4:4106763-4106782 Msa0831080:intron 30.0%
AATTCTTCTCTAATGGTTTC+AGG + chr5_4:4106770-4106789 Msa0831080:intron 30.0%
! ATACTGAGAAAAGCGTGATT+AGG - chr5_4:4103577-4103596 None:intergenic 35.0%
TATCGTTGGATTGAAGAGAA+CGG - chr5_4:4103726-4103745 None:intergenic 35.0%
AAAATGGGATTCACATGGAA+AGG - chr5_4:4103822-4103841 None:intergenic 35.0%
ACAGAAAAATGGGATTCACA+TGG - chr5_4:4103827-4103846 None:intergenic 35.0%
!! TCTGTTTCTGTATTTCCTAC+CGG + chr5_4:4103842-4103861 Msa0831080:intron 35.0%
! TCTCTATTTGGATGATGATG+AGG + chr5_4:4104129-4104148 Msa0831080:intron 35.0%
! AGTTCTGTGTGTATTTTACG+CGG + chr5_4:4104163-4104182 Msa0831080:intron 35.0%
AATGTCGTCTTGATTACCAA+AGG + chr5_4:4104235-4104254 Msa0831080:intron 35.0%
! AAAGTTTGCTCTTCAACCTT+TGG - chr5_4:4104254-4104273 None:intergenic 35.0%
! ATCTATCTCTATTGATGGAC+TGG - chr5_4:4104591-4104610 None:intergenic 35.0%
GTCCATCAATAGAGATAGAT+TGG + chr5_4:4104591-4104610 Msa0831080:intron 35.0%
AGCCAATCTATCTCTATTGA+TGG - chr5_4:4104596-4104615 None:intergenic 35.0%
! TTCAAAGATGCACTGTGTTT+TGG + chr5_4:4104637-4104656 Msa0831080:intron 35.0%
! TCAAAGATGCACTGTGTTTT+GGG + chr5_4:4104638-4104657 Msa0831080:intron 35.0%
AGAATCTTCAATCTCTCTAG+AGG - chr5_4:4104778-4104797 None:intergenic 35.0%
! TATTGTTGATTACTGGACTC+AGG + chr5_4:4104905-4104924 Msa0831080:intron 35.0%
TAAGAAAATGTGTGGATGGA+TGG + chr5_4:4104983-4105002 Msa0831080:intron 35.0%
AAAATACAACGGAACAGTTC+AGG + chr5_4:4105095-4105114 Msa0831080:five_prime_UTR 35.0%
AAATACAACGGAACAGTTCA+GGG + chr5_4:4105096-4105115 Msa0831080:five_prime_UTR 35.0%
! TATGGAAAACTGAGGGTTTT+AGG + chr5_4:4105130-4105149 Msa0831080:five_prime_UTR 35.0%
! ATGGAAAACTGAGGGTTTTA+GGG + chr5_4:4105131-4105150 Msa0831080:five_prime_UTR 35.0%
!!! GGTTTTAGGGGAATGTTTAA+AGG + chr5_4:4105144-4105163 Msa0831080:exon 35.0%
AGGGGAATGTTTAAAGGAAA+CGG + chr5_4:4105150-4105169 Msa0831080:exon 35.0%
AGAACTTCACTGCTGAATTT+GGG - chr5_4:4105197-4105216 None:intergenic 35.0%
AAGAACTTCACTGCTGAATT+TGG - chr5_4:4105198-4105217 None:intergenic 35.0%
GTGGTATTCTAAGTCTCTAT+CGG + chr5_4:4105329-4105348 Msa0831080:intron 35.0%
TCGAGCTAACAACTTGAATA+TGG - chr5_4:4105551-4105570 None:intergenic 35.0%
TTAACAGTACCTGTACAGTT+AGG - chr5_4:4105792-4105811 None:intergenic 35.0%
!! CTAGAGCATTGTATAAAGGA+TGG + chr5_4:4105989-4106008 Msa0831080:CDS 35.0%
ACTGTAAAGTATGAGGGATT+TGG + chr5_4:4106405-4106424 Msa0831080:CDS 35.0%
! GGATTTGGAGCTTTATACAA+GGG + chr5_4:4106420-4106439 Msa0831080:CDS 35.0%
AATCATTTATCTAGGTGGGT+AGG + chr5_4:4106536-4106555 Msa0831080:intron 35.0%
CAGTGGTATATGAAATTGCA+AGG + chr5_4:4106618-4106637 Msa0831080:intron 35.0%
TTGCAAGGAAACAAAAACAC+GGG + chr5_4:4106633-4106652 Msa0831080:intron 35.0%
!! CTGTTTCTGTATTTCCTACC+GGG + chr5_4:4103843-4103862 Msa0831080:intron 40.0%
ATAATATAATAAGGCGGGCC+CGG - chr5_4:4103864-4103883 None:intergenic 40.0%
! TGTATTTTACGCGGTGTCTT+TGG + chr5_4:4104172-4104191 Msa0831080:intron 40.0%
TGGCGTCCAAATAACAACTT+TGG + chr5_4:4104300-4104319 Msa0831080:intron 40.0%
! GTGCATCTTTGAAAATCAGC+TGG - chr5_4:4104630-4104649 None:intergenic 40.0%
TTATAGTTCACGAACAGCTG+TGG + chr5_4:4104750-4104769 Msa0831080:intron 40.0%
!! TGGAAAACTGAGGGTTTTAG+GGG + chr5_4:4105132-4105151 Msa0831080:five_prime_UTR 40.0%
TGGGATAATACGAGCACAAT+TGG - chr5_4:4105178-4105197 None:intergenic 40.0%
AAACAGTGATCAGAAGGACA+TGG - chr5_4:4105297-4105316 None:intergenic 40.0%
AAGGATTTCGGTACCATTTC+CGG - chr5_4:4105362-4105381 None:intergenic 40.0%
TACCTACCTTCCAAACTTCA+AGG + chr5_4:4105617-4105636 Msa0831080:intron 40.0%
! ACATAGCCTTGAAGTTTGGA+AGG - chr5_4:4105626-4105645 None:intergenic 40.0%
! ATGGACATAGCCTTGAAGTT+TGG - chr5_4:4105630-4105649 None:intergenic 40.0%
ATGCTCTTTCAACAGTCTTC+CGG + chr5_4:4105956-4105975 Msa0831080:CDS 40.0%
CTTACAACTCCTATGACTGA+AGG - chr5_4:4106018-4106037 None:intergenic 40.0%
TCTTCTGCGAATGACATCAA+GGG - chr5_4:4106289-4106308 None:intergenic 40.0%
TTCTTCTGCGAATGACATCA+AGG - chr5_4:4106290-4106309 None:intergenic 40.0%
ATTCGCAGAAGAATGCAGAT+GGG + chr5_4:4106297-4106316 Msa0831080:CDS 40.0%
AAGGGTAATCTTGAGTACAC+TGG + chr5_4:4106360-4106379 Msa0831080:CDS 40.0%
TAATCTTGAGTACACTGGCA+TGG + chr5_4:4106365-4106384 Msa0831080:CDS 40.0%
! GGGATTTGGAGCTTTATACA+AGG + chr5_4:4106419-4106438 Msa0831080:CDS 40.0%
CTTAGTACCCAATTCAGTCA+AGG + chr5_4:4106443-4106462 Msa0831080:CDS 40.0%
CAGCTAACCTTGACTGAATT+GGG - chr5_4:4106453-4106472 None:intergenic 40.0%
TCAGCTAACCTTGACTGAAT+TGG - chr5_4:4106454-4106473 None:intergenic 40.0%
TGCAAGGAAACAAAAACACG+GGG + chr5_4:4106634-4106653 Msa0831080:intron 40.0%
TCTTCTCTAATGGTTTCAGG+TGG + chr5_4:4106773-4106792 Msa0831080:intron 40.0%
! CTGAGAAAAGCGTGATTAGG+AGG - chr5_4:4103574-4103593 None:intergenic 45.0%
ATCTGCAAATCTCTTGTCGC+AGG + chr5_4:4103595-4103614 Msa0831080:five_prime_UTR 45.0%
AAGTGAAACTCACACTCCAC+CGG - chr5_4:4103629-4103648 None:intergenic 45.0%
!!! GACTGGTTTAGACGTGCTTT+TGG - chr5_4:4104574-4104593 None:intergenic 45.0%
GAGATTGAAGATTCTGCTGC+AGG + chr5_4:4104783-4104802 Msa0831080:five_prime_UTR 45.0%
AAAATGTGTGGATGGATGGC+AGG + chr5_4:4104987-4105006 Msa0831080:intron 45.0%
AAATGTGTGGATGGATGGCA+GGG + chr5_4:4104988-4105007 Msa0831080:intron 45.0%
! AGTCTCTATCGGTTGCAAAC+CGG + chr5_4:4105340-4105359 Msa0831080:CDS 45.0%
! TATCGGTTGCAAACCGGAAA+TGG + chr5_4:4105346-4105365 Msa0831080:CDS 45.0%
AGCCTTGAAGTTTGGAAGGT+AGG - chr5_4:4105622-4105641 None:intergenic 45.0%
GCATCTCCTCATCAATACAG+AGG + chr5_4:4105925-4105944 Msa0831080:CDS 45.0%
TGCTCTTTCAACAGTCTTCC+GGG + chr5_4:4105957-4105976 Msa0831080:CDS 45.0%
!! GGCGCTAGAGCATTGTATAA+AGG + chr5_4:4105985-4106004 Msa0831080:CDS 45.0%
GGATGGTTACCTTCAGTCAT+AGG + chr5_4:4106006-4106025 Msa0831080:CDS 45.0%
GAGTCTTGAGCAATTCCAAG+TGG - chr5_4:4106195-4106214 None:intergenic 45.0%
TTCTGCGAATGACATCAAGG+GGG - chr5_4:4106287-4106306 None:intergenic 45.0%
CTTCTGCGAATGACATCAAG+GGG - chr5_4:4106288-4106307 None:intergenic 45.0%
CATTCGCAGAAGAATGCAGA+TGG + chr5_4:4106296-4106315 Msa0831080:CDS 45.0%
TGCAAATCTCTTGTCGCAGG+TGG + chr5_4:4103598-4103617 Msa0831080:five_prime_UTR 50.0%
AATGTCCGCAACTTACCCGA+TGG + chr5_4:4105750-4105769 Msa0831080:CDS 50.0%
TCAACAGTCTTCCGGGAAGA+AGG + chr5_4:4105964-4105983 Msa0831080:CDS 50.0%
TTGTCTGCAGATACCGTACG+TGG + chr5_4:4106116-4106135 Msa0831080:intron 50.0%
TGTCTGCAGATACCGTACGT+GGG + chr5_4:4106117-4106136 Msa0831080:intron 50.0%
CAGAGCTAAGTGTGACCACA+AGG + chr5_4:4106214-4106233 Msa0831080:CDS 50.0%
TGACCACAAGGCTTGCATGT+GGG + chr5_4:4106226-4106245 Msa0831080:CDS 50.0%
TGGAACTATTGGCCAGACAG+TGG + chr5_4:4106257-4106276 Msa0831080:CDS 50.0%
CTTCCGTTGTCACTGGTGAT+GGG + chr5_4:4106337-4106356 Msa0831080:CDS 50.0%
CTTCCCATCACCAGTGACAA+CGG - chr5_4:4106343-4106362 None:intergenic 50.0%
!! GTTGTCACTGGTGATGGGAA+GGG + chr5_4:4106342-4106361 Msa0831080:CDS 50.0%
CGAAGGCAATGGCTATGGAA+GGG - chr5_4:4106800-4106819 None:intergenic 50.0%
ACGAAGGCAATGGCTATGGA+AGG - chr5_4:4106801-4106820 None:intergenic 50.0%
TGTCACGAAGGCAATGGCTA+TGG - chr5_4:4106805-4106824 None:intergenic 50.0%
CTCGTATGTCACGAAGGCAA+TGG - chr5_4:4106811-4106830 None:intergenic 50.0%
TGCCTTCGTGACATACGAGA+TGG + chr5_4:4106812-4106831 Msa0831080:CDS 50.0%
GACCATCTCGTATGTCACGA+AGG - chr5_4:4106817-4106836 None:intergenic 50.0%
CGTGACATACGAGATGGTCA+AGG + chr5_4:4106818-4106837 Msa0831080:CDS 50.0%
GAGATGGTCAAGGACGTTCT+AGG + chr5_4:4106828-4106847 Msa0831080:CDS 50.0%
TATAATAAGGCGGGCCCGGT+AGG - chr5_4:4103860-4103879 None:intergenic 55.0%
CTCACTCCTCTTCTGCGTCT+TGG + chr5_4:4105700-4105719 Msa0831080:CDS 55.0%
ACTCCTCTTCTGCGTCTTGG+AGG + chr5_4:4105703-4105722 Msa0831080:CDS 55.0%
CTCTTCTGCGTCTTGGAGGT+GGG + chr5_4:4105707-4105726 Msa0831080:CDS 55.0%
TCTTCTGCGTCTTGGAGGTG+GGG + chr5_4:4105708-4105727 Msa0831080:CDS 55.0%
CAGGTCCATCGGGTAAGTTG+CGG - chr5_4:4105758-4105777 None:intergenic 55.0%
ATGCTCTAGCGCCTTCTTCC+CGG - chr5_4:4105978-4105997 None:intergenic 55.0%
GTGACCACAAGGCTTGCATG+TGG + chr5_4:4106225-4106244 Msa0831080:CDS 55.0%
GACCACAAGGCTTGCATGTG+GGG + chr5_4:4106227-4106246 Msa0831080:CDS 55.0%
CGCAGAAGAATGCAGATGGG+AGG + chr5_4:4106300-4106319 Msa0831080:CDS 55.0%
GAAGAATGCAGATGGGAGGC+TGG + chr5_4:4106304-4106323 Msa0831080:CDS 55.0%
ATGCAGATGGGAGGCTGGAA+AGG + chr5_4:4106309-4106328 Msa0831080:CDS 55.0%
GCTTCCGTTGTCACTGGTGA+TGG + chr5_4:4106336-4106355 Msa0831080:CDS 55.0%
!! CGTTGTCACTGGTGATGGGA+AGG + chr5_4:4106341-4106360 Msa0831080:CDS 55.0%
CCACCTCCAAGACGCAGAAG+AGG - chr5_4:4105709-4105728 None:intergenic 60.0%
CCTCTTCTGCGTCTTGGAGG+TGG + chr5_4:4105706-4105725 Msa0831080:CDS 60.0%
CGCAACTTACCCGATGGACC+TGG + chr5_4:4105756-4105775 Msa0831080:CDS 60.0%
GCGAGGACGCCTAACTGTAC+AGG + chr5_4:4105780-4105799 Msa0831080:CDS 60.0%
AGCCCCACATGCAAGCCTTG+TGG - chr5_4:4106232-4106251 None:intergenic 60.0%
GGGGCTGCTGCTGGAACTAT+TGG + chr5_4:4106246-4106265 Msa0831080:CDS 60.0%
! CAAGGGGGTATGCCACTGTC+TGG - chr5_4:4106272-4106291 None:intergenic 60.0%
CTTGTCGCAGGTGGAGTCGC+CGG + chr5_4:4103607-4103626 Msa0831080:five_prime_UTR 65.0%
CTTGGAGGTGGGGCATGTGC+AGG + chr5_4:4105718-4105737 Msa0831080:CDS 65.0%
TACCCGATGGACCTGGTGCG+AGG + chr5_4:4105763-4105782 Msa0831080:CDS 65.0%
GTCCTCGCACCAGGTCCATC+GGG - chr5_4:4105768-4105787 None:intergenic 65.0%
CGTCCTCGCACCAGGTCCAT+CGG - chr5_4:4105769-4105788 None:intergenic 65.0%
CAGTTAGGCGTCCTCGCACC+AGG - chr5_4:4105777-4105796 None:intergenic 65.0%
CTTGCATGTGGGGCTGCTGC+TGG + chr5_4:4106237-4106256 Msa0831080:CDS 65.0%
GGCGCTGCTTCCGTTGTCAC+TGG + chr5_4:4106330-4106349 Msa0831080:CDS 65.0%
GTCGCAGGTGGAGTCGCCGG+TGG + chr5_4:4103610-4103629 Msa0831080:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 4103571 4107050 4103571 ID=Msa0831080;Name=Msa0831080
chr5_4 mRNA 4103571 4107050 4103571 ID=Msa0831080-mRNA-1;Parent=Msa0831080;Name=Msa0831080-mRNA-1;_AED=0.19;_eAED=0.19;_QI=195|1|1|1|0.85|0.87|8|175|256
chr5_4 exon 4103571 4103635 4103571 ID=Msa0831080-mRNA-1:exon:1639;Parent=Msa0831080-mRNA-1
chr5_4 exon 4104756 4104804 4104756 ID=Msa0831080-mRNA-1:exon:1640;Parent=Msa0831080-mRNA-1
chr5_4 exon 4105075 4105238 4105075 ID=Msa0831080-mRNA-1:exon:1641;Parent=Msa0831080-mRNA-1
chr5_4 exon 4105330 4105367 4105330 ID=Msa0831080-mRNA-1:exon:1642;Parent=Msa0831080-mRNA-1
chr5_4 exon 4105689 4105801 4105689 ID=Msa0831080-mRNA-1:exon:1643;Parent=Msa0831080-mRNA-1
chr5_4 exon 4105919 4106032 4105919 ID=Msa0831080-mRNA-1:exon:1644;Parent=Msa0831080-mRNA-1
chr5_4 exon 4106126 4106464 4106126 ID=Msa0831080-mRNA-1:exon:1645;Parent=Msa0831080-mRNA-1
chr5_4 exon 4106792 4107050 4106792 ID=Msa0831080-mRNA-1:exon:1646;Parent=Msa0831080-mRNA-1
chr5_4 five_prime_UTR 4103571 4103635 4103571 ID=Msa0831080-mRNA-1:five_prime_utr;Parent=Msa0831080-mRNA-1
chr5_4 five_prime_UTR 4104756 4104804 4104756 ID=Msa0831080-mRNA-1:five_prime_utr;Parent=Msa0831080-mRNA-1
chr5_4 five_prime_UTR 4105075 4105155 4105075 ID=Msa0831080-mRNA-1:five_prime_utr;Parent=Msa0831080-mRNA-1
chr5_4 CDS 4105156 4105238 4105156 ID=Msa0831080-mRNA-1:cds;Parent=Msa0831080-mRNA-1
chr5_4 CDS 4105330 4105367 4105330 ID=Msa0831080-mRNA-1:cds;Parent=Msa0831080-mRNA-1
chr5_4 CDS 4105689 4105801 4105689 ID=Msa0831080-mRNA-1:cds;Parent=Msa0831080-mRNA-1
chr5_4 CDS 4105919 4106032 4105919 ID=Msa0831080-mRNA-1:cds;Parent=Msa0831080-mRNA-1
chr5_4 CDS 4106126 4106464 4106126 ID=Msa0831080-mRNA-1:cds;Parent=Msa0831080-mRNA-1
chr5_4 CDS 4106792 4106875 4106792 ID=Msa0831080-mRNA-1:cds;Parent=Msa0831080-mRNA-1
chr5_4 three_prime_UTR 4106876 4107050 4106876 ID=Msa0831080-mRNA-1:three_prime_utr;Parent=Msa0831080-mRNA-1
Gene Sequence

>Msa0831080

ATGTTTAAAGGAAACGGAACCAATTGTGCTCGTATTATCCCAAATTCAGCAGTGAAGTTCTTTAGCTATGAGCAAGCATCTAATGGTATTCTAAGTCTCTATCGGTTGCAAACCGGAAATGAAGAAGCTCAACTCACTCCTCTTCTGCGTCTTGGAGGTGGGGCATGTGCAGGAATCATTGCAATGTCCGCAACTTACCCGATGGACCTGGTGCGAGGACGCCTAACTGTACAGACAGAAGCATCTCCTCATCAATACAGAGGAATTTTTAATGCTCTTTCAACAGTCTTCCGGGAAGAAGGCGCTAGAGCATTGTATAAAGGATGGTTACCTTCAGTCATAGGAGTTATACCGTACGTGGGTTTAAATTTTTCTGTATATGAATCTCTAAAAGACTGGTTGATTAAAACAAAACCACTTGGAATTGCTCAAGACTCAGAGCTAAGTGTGACCACAAGGCTTGCATGTGGGGCTGCTGCTGGAACTATTGGCCAGACAGTGGCATACCCCCTTGATGTCATTCGCAGAAGAATGCAGATGGGAGGCTGGAAAGGCGCTGCTTCCGTTGTCACTGGTGATGGGAAGGGTAATCTTGAGTACACTGGCATGGTTGATGCATTCAGTAAAACTGTAAAGTATGAGGGATTTGGAGCTTTATACAAGGGCTTAGTACCCAATTCAGTCAAGGTGGTCCCTTCCATAGCCATTGCCTTCGTGACATACGAGATGGTCAAGGACGTTCTAGGAGTTGAAATGAGAATATCTGACTGA
Protein sequence

>Msa0831080

MFKGNGTNCARIIPNSAVKFFSYEQASNGILSLYRLQTGNEEAQLTPLLRLGGGACAGIIAMSATYPMDLVRGRLTVQTEASPHQYRGIFNALSTVFREEGARALYKGWLPSVIGVIPYVGLNFSVYESLKDWLIKTKPLGIAQDSELSVTTRLACGAAAGTIGQTVAYPLDVIRRRMQMGGWKGAASVVTGDGKGNLEYTGMVDAFSKTVKYEGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDVLGVEMRISD*