AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0754510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0754510 MtrunA17_Chr1g0199571 92.308 91 7 0 9 99 127 217 2.07e-52 171
Msa0754510 MtrunA17_Chr1g0156811 58.427 89 37 0 9 97 127 215 1.10e-32 118
Msa0754510 MtrunA17_Chr4g0037111 56.044 91 40 0 9 99 127 217 1.31e-32 115
Msa0754510 MtrunA17_Chr7g0246311 35.484 93 57 2 8 98 124 215 6.77e-13 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0754510 AT5G04220.3 62.637 91 34 0 9 99 65 155 1.60e-35 126
Msa0754510 AT5G04220.2 62.637 91 34 0 9 99 127 217 2.70e-35 126
Msa0754510 AT2G20990.1 54.639 97 44 0 3 99 121 217 1.19e-32 119
Msa0754510 AT2G20990.3 54.639 97 44 0 3 99 121 217 1.34e-32 119
Msa0754510 AT2G20990.2 57.143 91 39 0 9 99 127 217 1.44e-32 119
Msa0754510 AT1G20080.2 50.515 97 48 0 3 99 121 217 7.24e-31 114
Msa0754510 AT1G20080.3 50.515 97 48 0 3 99 121 217 7.24e-31 114
Msa0754510 AT1G20080.4 50.515 97 48 0 3 99 121 217 7.24e-31 114
Msa0754510 AT1G20080.1 50.515 97 48 0 3 99 121 217 7.24e-31 114
Msa0754510 AT1G20080.5 50.515 97 48 0 3 99 121 217 7.24e-31 114
Msa0754510 AT1G05500.1 32.990 97 64 1 3 98 120 216 1.03e-13 65.5
Msa0754510 AT3G61050.2 36.559 93 56 2 8 98 124 215 1.63e-13 65.1
Msa0754510 AT3G61050.1 36.559 93 56 2 8 98 124 215 1.63e-13 65.1
Msa0754510 AT1G05500.2 40.278 72 42 1 28 98 1 72 5.55e-12 60.5

Find 124 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACAGCCTCATGTGGATTT+TGG 0.130792 5_2:+8070968 Msa0754510:intron
ATAATCATGCTGACAGTTTA+TGG 0.142959 5_2:+8071951 Msa0754510:three_prime_UTR
TATTATTGTTATGGATTATT+AGG 0.158712 5_2:-8071894 None:intergenic
TATTAGGACTGCTTAATTTA+AGG 0.161510 5_2:-8071878 None:intergenic
TAGTGTTGAGATTCCTATTA+AGG 0.189939 5_2:+8070254 Msa0754510:five_prime_UTR
ATGCTGATAAAGAAGTATTA+AGG 0.197682 5_2:+8071383 Msa0754510:three_prime_UTR
TAGCTTATGAAATATGATTT+TGG 0.224472 5_2:+8069637 Msa0754510:five_prime_UTR
TCAAAGTTGAGAGGCTAAAT+TGG 0.241187 5_2:-8069878 None:intergenic
GATATTCCTTCATTTGATTT+AGG 0.246878 5_2:+8072282 Msa0754510:three_prime_UTR
TTATATGGATAATTAAATTA+TGG 0.259071 5_2:-8072410 None:intergenic
TTCTGCAGGTATGAAAGTTT+TGG 0.273201 5_2:+8070550 Msa0754510:intron
AACAATGCCAGTTTAACTTT+TGG 0.280661 5_2:-8070292 None:intergenic
TTTGGAGCAACACCCTTAAT+AGG 0.284160 5_2:-8070267 None:intergenic
ACTCTCAATTGGAAGTTATA+TGG 0.289029 5_2:-8072425 None:intergenic
TGCAAGGTCAATACTATGTT+TGG 0.291324 5_2:-8070626 None:intergenic
TCCATAACAATAATAGTAAA+AGG 0.311165 5_2:+8071902 Msa0754510:three_prime_UTR
AAGGAATGCAATAAGACATT+TGG 0.312175 5_2:+8069841 Msa0754510:five_prime_UTR
TCTAACTTTCATCACATTCA+TGG 0.315827 5_2:-8069930 None:intergenic
GCTAAGATCAGCAAAATTTC+AGG 0.326164 5_2:+8070345 Msa0754510:CDS
ATTATTGAAGGATAGTTAAC+TGG 0.331648 5_2:+8071622 Msa0754510:three_prime_UTR
GGAAACAAATGAAAAGGAAT+TGG 0.343840 5_2:+8070571 Msa0754510:CDS
TATTCTGCAATGGTTAAATC+AGG 0.349047 5_2:-8072341 None:intergenic
CCAAAATCCAAAAGTTAAAC+TGG 0.349476 5_2:+8070285 Msa0754510:five_prime_UTR
GAGAGAGCTGTGGCGAATTC+CGG 0.355815 5_2:-8071097 None:intergenic
GCAGATAAGTTTAAGACCTT+TGG 0.357838 5_2:+8070790 Msa0754510:CDS
ATATAATTTACCATGTTGTT+TGG 0.362994 5_2:+8069563 Msa0754510:five_prime_UTR
ATGGTTGATTTGGTGTTGTT+TGG 0.367363 5_2:+8072816 Msa0754510:three_prime_UTR
TCGATAAAGTGCGCAATTGT+TGG 0.373558 5_2:-8071454 None:intergenic
CAATAAGACATTTGGGATGA+TGG 0.375191 5_2:+8069849 Msa0754510:five_prime_UTR
GTTTATGGGAGCATGAATTA+TGG 0.389437 5_2:+8072519 Msa0754510:three_prime_UTR
GACATTTGGGATGATGGGTT+TGG 0.392454 5_2:+8069855 Msa0754510:five_prime_UTR
AAAAGTTAAACTGGCATTGT+TGG 0.398909 5_2:+8070294 Msa0754510:five_prime_UTR
CGATCTATATGCTGCGATCT+TGG 0.403507 5_2:+8072576 Msa0754510:three_prime_UTR
AGTGTTGAGATTCCTATTAA+GGG 0.409795 5_2:+8070255 Msa0754510:five_prime_UTR
AAAGATTGTGGTGTCTTTGA+TGG 0.416050 5_2:+8070835 Msa0754510:CDS
CTTCATAACCACATTATTGA+AGG 0.418430 5_2:+8071610 Msa0754510:three_prime_UTR
AGGAATGCAATAAGACATTT+GGG 0.421032 5_2:+8069842 Msa0754510:five_prime_UTR
GTGTAGCGGAGGCAGGGAGG+TGG 0.422043 5_2:+8069765 Msa0754510:five_prime_UTR
TGCTGATAAAGAAGTATTAA+GGG 0.432567 5_2:+8071384 Msa0754510:three_prime_UTR
TATTGCATTCCTTGCAATGA+TGG 0.437005 5_2:-8069831 None:intergenic
TTGCTAACTATAGAAAGAAA+TGG 0.440469 5_2:+8069972 Msa0754510:five_prime_UTR
AAACTTAGGTCTGGATTTGA+AGG 0.442436 5_2:-8072661 None:intergenic
GAGAGTGATGCTTTCTAAGA+TGG 0.442565 5_2:+8072018 Msa0754510:three_prime_UTR
GCAAGGTCAATACTATGTTT+GGG 0.443699 5_2:-8070625 None:intergenic
CGATAAAGTGCGCAATTGTT+GGG 0.445360 5_2:-8071453 None:intergenic
TTGTTGTGGTCAGGTGCAGC+AGG 0.446623 5_2:+8072728 Msa0754510:three_prime_UTR
ATGTCTGGTGTAGCGGAGGC+AGG 0.450530 5_2:+8069758 Msa0754510:five_prime_UTR
TAATGAAACAATTGCTCTAC+CGG 0.451479 5_2:+8071078 Msa0754510:three_prime_UTR
CACTAACCACGCTGCAATCA+TGG 0.461908 5_2:-8072631 None:intergenic
TCATGAAACAAGTCATCAAA+TGG 0.463122 5_2:+8070594 Msa0754510:CDS
ATGTATCATAAGCATATTGT+TGG 0.476359 5_2:+8071985 Msa0754510:three_prime_UTR
ATCCATTGGTCTTCTTGCAT+AGG 0.483976 5_2:-8072239 None:intergenic
TACAGAATTTAGAGTCGTAA+AGG 0.487741 5_2:-8072103 None:intergenic
TAGGTGGTGTTGTTGTGGTC+AGG 0.491423 5_2:+8072719 Msa0754510:three_prime_UTR
ACGAAAGAAGTTGCATCCAT+TGG 0.491832 5_2:-8072253 None:intergenic
TATGAGATTGAATTTATGTC+TGG 0.494249 5_2:+8069743 Msa0754510:five_prime_UTR
AATAAGACATTTGGGATGAT+GGG 0.494274 5_2:+8069850 Msa0754510:five_prime_UTR
TTAACAACAGAGTTCTGAAT+GGG 0.497423 5_2:-8071508 None:intergenic
TGTAGCGGAGGCAGGGAGGT+GGG 0.498715 5_2:+8069766 Msa0754510:five_prime_UTR
TTTGGGTTGGCGATATCTGG+AGG 0.509662 5_2:+8070986 Msa0754510:CDS
GCTACAGACGGAGGAAACTT+AGG 0.512242 5_2:-8072675 None:intergenic
AGACGGAGGAAACTTAGGTC+TGG 0.518668 5_2:-8072670 None:intergenic
TGATGCTAGACCCTTCATAC+AGG 0.519583 5_2:-8071549 None:intergenic
AGAGTGATGCTTTCTAAGAT+GGG 0.525015 5_2:+8072019 Msa0754510:three_prime_UTR
AGCACATTGTTATTCTGCAA+TGG 0.526128 5_2:-8072351 None:intergenic
ACCACAATCTTTGCAAAACA+TGG 0.526489 5_2:-8070824 None:intergenic
TGACTACCTAAATCAAATGA+AGG 0.528716 5_2:-8072288 None:intergenic
GCTAGACCCTTCATACAGGC+TGG 0.534194 5_2:-8071545 None:intergenic
GTCTATGAAGATCAAAGTGC+AGG 0.534460 5_2:+8070655 Msa0754510:CDS
TTGGGTTGGCGATATCTGGA+GGG 0.536736 5_2:+8070987 Msa0754510:CDS
GTATGAAGGGTCTAGCATCA+TGG 0.543228 5_2:+8071552 Msa0754510:three_prime_UTR
AACAGCTATAAGTAGATCCT+CGG 0.546715 5_2:-8072199 None:intergenic
TATGAAGGGTCTAGCATCAT+GGG 0.551384 5_2:+8071553 Msa0754510:three_prime_UTR
AAGGGAACCTCGAGTTGTGA+GGG 0.552694 5_2:+8071402 Msa0754510:three_prime_UTR
ATGTCTTCCAGCCTGTATGA+AGG 0.554066 5_2:+8071538 Msa0754510:three_prime_UTR
TTAACTATCCTTCAATAATG+TGG 0.555394 5_2:-8071618 None:intergenic
TCAATTAATTCAAAGTTGAG+AGG 0.557443 5_2:-8069887 None:intergenic
ATTCGCCACAGCTCTCTCCA+TGG 0.558049 5_2:+8071102 Msa0754510:three_prime_UTR
AATTATGGTCCTGGTGTCAA+TGG 0.558417 5_2:+8072534 Msa0754510:three_prime_UTR
TGAATTTATGTCTGGTGTAG+CGG 0.559041 5_2:+8069751 Msa0754510:five_prime_UTR
GAACCTCGAGTTGTGAGGGT+TGG 0.560787 5_2:+8071406 Msa0754510:three_prime_UTR
GTTAACAACAGAGTTCTGAA+TGG 0.561492 5_2:-8071509 None:intergenic
TGTGGTGTCTTTGATGGAGA+AGG 0.563558 5_2:+8070841 Msa0754510:CDS
GTGTGTAGGTGGTGTTGTTG+TGG 0.565056 5_2:+8072714 Msa0754510:three_prime_UTR
TGGAGTGGCTAATATATGAC+AGG 0.565325 5_2:-8072464 None:intergenic
TGTCTTCCAGCCTGTATGAA+GGG 0.565467 5_2:+8071539 Msa0754510:three_prime_UTR
AAACAAGTCATCAAATGGAC+TGG 0.565498 5_2:+8070599 Msa0754510:CDS
GCTCTGCAGATTTATTTACC+AGG 0.565646 5_2:+8069528 Msa0754510:five_prime_UTR
TTTGTGGCTCTGTGTGTAGG+TGG 0.566315 5_2:+8072703 Msa0754510:three_prime_UTR
GTTCAATTTACAGCCTCATG+TGG 0.577586 5_2:+8070961 Msa0754510:intron
GAGGTCAAAACCATGTTCCA+TGG 0.583571 5_2:-8071119 None:intergenic
TGTCTGGTGTAGCGGAGGCA+GGG 0.584181 5_2:+8069759 Msa0754510:five_prime_UTR
AGCCTATGCAAGAAGACCAA+TGG 0.586752 5_2:+8072237 Msa0754510:three_prime_UTR
TTGCAGCGTGGTTAGTGTGT+TGG 0.592356 5_2:+8072637 Msa0754510:three_prime_UTR
GGGAGCATGAATTATGGTCC+TGG 0.596278 5_2:+8072525 Msa0754510:three_prime_UTR
TCTTTCTATAGTTAGCAAAG+TGG 0.597790 5_2:-8069967 None:intergenic
ACAGCTCTCTCCATGGAACA+TGG 0.598176 5_2:+8071109 Msa0754510:three_prime_UTR
TAAGGGAACCTCGAGTTGTG+AGG 0.598332 5_2:+8071401 Msa0754510:three_prime_UTR
GGATGCAACTTCTTTCGTCA+AGG 0.598987 5_2:+8072258 Msa0754510:three_prime_UTR
TTTGCATGATTTGGCCTCCG+AGG 0.600110 5_2:+8072182 Msa0754510:three_prime_UTR
CTGGTGTAGCGGAGGCAGGG+AGG 0.603912 5_2:+8069762 Msa0754510:five_prime_UTR
AAAGTGCGCAATTGTTGGGA+GGG 0.605427 5_2:-8071449 None:intergenic
AACTTAGGTCTGGATTTGAA+GGG 0.615955 5_2:-8072660 None:intergenic
AAACCAACCCTCACAACTCG+AGG 0.620062 5_2:-8071409 None:intergenic
CTACAATATAATCATAATCG+CGG 0.620252 5_2:-8071026 None:intergenic
CTGGTGTCAATGGTAGAAGT+TGG 0.621412 5_2:+8072544 Msa0754510:three_prime_UTR
TAAAGTGCGCAATTGTTGGG+AGG 0.630263 5_2:-8071450 None:intergenic
ATTTATGTCTGGTGTAGCGG+AGG 0.641352 5_2:+8069754 Msa0754510:five_prime_UTR
AAAGGTCTTAAACTTATCTG+CGG 0.650638 5_2:-8070788 None:intergenic
CAACTTCTACCATTGACACC+AGG 0.652303 5_2:-8072543 None:intergenic
TGGGTTGGCGATATCTGGAG+GGG 0.654158 5_2:+8070988 Msa0754510:CDS
CTTCATAGACAACACATGCA+AGG 0.656238 5_2:-8070642 None:intergenic
ATGTTCCATGGAGAGAGCTG+TGG 0.660109 5_2:-8071107 None:intergenic
TCTACTGCACCATCATTGCA+AGG 0.665556 5_2:+8069822 Msa0754510:five_prime_UTR
AATTAAATTATGGCAAAGAG+CGG 0.674865 5_2:-8072400 None:intergenic
GCCAACCCAAAATCCACATG+AGG 0.676621 5_2:-8070974 None:intergenic
CATGGAAGTGTAGACACCAA+AGG 0.678495 5_2:-8070806 None:intergenic
GTGAACATAAGCGAAATGCA+AGG 0.684278 5_2:+8070321 Msa0754510:exon
TTCTTCGATACCAAACAACA+TGG 0.687542 5_2:-8069573 None:intergenic
CTACCACCACTAAAACAGCA+TGG 0.690939 5_2:-8072751 None:intergenic
GAAGGGTCTAGCATCATGGG+AGG 0.706115 5_2:+8071556 Msa0754510:three_prime_UTR
AGCTATAAGTAGATCCTCGG+AGG 0.708824 5_2:-8072196 None:intergenic
ACACGCCGAAGAAAACTGTG+AGG 0.784742 5_2:-8069799 None:intergenic
TTGTTGCCATGATTGCAGCG+TGG 0.786597 5_2:+8072625 Msa0754510:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTATGTTTTGTTTTT+AGG + chr5_2:8070130-8070149 Msa0754510:intron 10.0%
!!! ATTATTATGTTTTGTTTTTA+GGG + chr5_2:8070131-8070150 Msa0754510:intron 10.0%
!!! TATTATTATGTTTTGTTTTT+AGG + chr5_2:8070130-8070149 Msa0754510:intron 10.0%
!!! ATTATTATGTTTTGTTTTTA+GGG + chr5_2:8070131-8070150 Msa0754510:intron 10.0%
!! AATTATTTATCAAATAAGAA+GGG - chr5_2:8070939-8070958 None:intergenic 10.0%
!! TAATTATTTATCAAATAAGA+AGG - chr5_2:8070940-8070959 None:intergenic 10.0%
!!! ATTTTAAGTTTATTTATTTC+AGG + chr5_2:8071348-8071367 Msa0754510:intron 10.0%
!! TTATATGGATAATTAAATTA+TGG - chr5_2:8072413-8072432 None:intergenic 10.0%
!! GTTAAATAAAAAAAAGTTTA+TGG + chr5_2:8072504-8072523 Msa0754510:three_prime_UTR 10.0%
!! AACATAATAATAAGAATGAT+TGG - chr5_2:8070205-8070224 None:intergenic 15.0%
!!! TATTATTGTTATGGATTATT+AGG - chr5_2:8071897-8071916 None:intergenic 15.0%
!! ATATAATTTACCATGTTGTT+TGG + chr5_2:8069563-8069582 Msa0754510:five_prime_UTR 20.0%
!!! TAGCTTATGAAATATGATTT+TGG + chr5_2:8069637-8069656 Msa0754510:five_prime_UTR 20.0%
!!! ACAAAATGATTTTGTGATAA+TGG + chr5_2:8070022-8070041 Msa0754510:intron 20.0%
!! TTTATCTTGTGATATCATTA+GGG - chr5_2:8071170-8071189 None:intergenic 20.0%
!!! TTTTATCTTGTGATATCATT+AGG - chr5_2:8071171-8071190 None:intergenic 20.0%
!! TAATGATATCACAAGATAAA+AGG + chr5_2:8071170-8071189 Msa0754510:intron 20.0%
!!! GTTATTTAAGCTATAACTTT+TGG + chr5_2:8071314-8071333 Msa0754510:intron 20.0%
!! TGTTTACTTAAAGAAAAAAC+GGG - chr5_2:8071665-8071684 None:intergenic 20.0%
!! GTGTTTACTTAAAGAAAAAA+CGG - chr5_2:8071666-8071685 None:intergenic 20.0%
!!! TTTTTCTTTAAGTAAACACA+TGG + chr5_2:8071667-8071686 Msa0754510:three_prime_UTR 20.0%
!! TAACCAAAGAAAAAAAAAGA+AGG + chr5_2:8071850-8071869 Msa0754510:three_prime_UTR 20.0%
!!! ATACCTTCTTTTTTTTTCTT+TGG - chr5_2:8071856-8071875 None:intergenic 20.0%
!! TCCATAACAATAATAGTAAA+AGG + chr5_2:8071902-8071921 Msa0754510:three_prime_UTR 20.0%
!!! ACCTTTTACTATTATTGTTA+TGG - chr5_2:8071906-8071925 None:intergenic 20.0%
!!! TGTGTTTTATTTCTGTTTTA+TGG + chr5_2:8072797-8072816 Msa0754510:three_prime_UTR 20.0%
!!! TTATATTTTGAACTCTAACC+TGG - chr5_2:8069549-8069568 None:intergenic 25.0%
!! AGTTATTGTGTTTTGTCATT+TGG + chr5_2:8069660-8069679 Msa0754510:five_prime_UTR 25.0%
!! TTTCTTCAAGATTTTGTGTT+TGG + chr5_2:8069701-8069720 Msa0754510:five_prime_UTR 25.0%
! TATGAGATTGAATTTATGTC+TGG + chr5_2:8069743-8069762 Msa0754510:five_prime_UTR 25.0%
! TCAATTAATTCAAAGTTGAG+AGG - chr5_2:8069890-8069909 None:intergenic 25.0%
! TTGCTAACTATAGAAAGAAA+TGG + chr5_2:8069972-8069991 Msa0754510:five_prime_UTR 25.0%
!!! TAAGTGTCATTTAGTGATAT+TGG + chr5_2:8070058-8070077 Msa0754510:intron 25.0%
!!! AAGTGTCATTTAGTGATATT+GGG + chr5_2:8070059-8070078 Msa0754510:intron 25.0%
! TGTAAAGCTTTCAAAATACA+AGG + chr5_2:8070386-8070405 Msa0754510:intron 25.0%
! TAATCCTCTCTTTCATTTAT+AGG + chr5_2:8070489-8070508 Msa0754510:intron 25.0%
! AATCCTCTCTTTCATTTATA+GGG + chr5_2:8070490-8070509 Msa0754510:intron 25.0%
!!! AGTTTTGGAAACAAATGAAA+AGG + chr5_2:8070565-8070584 Msa0754510:CDS 25.0%
!! TATTTTCTAATTTTCGGTGA+GGG - chr5_2:8070694-8070713 None:intergenic 25.0%
!! TTATTTTCTAATTTTCGGTG+AGG - chr5_2:8070695-8070714 None:intergenic 25.0%
!!! TGATTTTGATTTTTCTCAGT+TGG + chr5_2:8070742-8070761 Msa0754510:intron 25.0%
! TTTCTTCTAATTTCACTTCT+TGG + chr5_2:8070880-8070899 Msa0754510:intron 25.0%
! TTCTTCTAATTTCACTTCTT+GGG + chr5_2:8070881-8070900 Msa0754510:intron 25.0%
! CTACAATATAATCATAATCG+CGG - chr5_2:8071029-8071048 None:intergenic 25.0%
!!! ATGCTGATAAAGAAGTATTA+AGG + chr5_2:8071383-8071402 Msa0754510:three_prime_UTR 25.0%
!!! TGCTGATAAAGAAGTATTAA+GGG + chr5_2:8071384-8071403 Msa0754510:three_prime_UTR 25.0%
! TTAACTATCCTTCAATAATG+TGG - chr5_2:8071621-8071640 None:intergenic 25.0%
! ATTATTGAAGGATAGTTAAC+TGG + chr5_2:8071622-8071641 Msa0754510:three_prime_UTR 25.0%
! TATTAGGACTGCTTAATTTA+AGG - chr5_2:8071881-8071900 None:intergenic 25.0%
! ATGTATCATAAGCATATTGT+TGG + chr5_2:8071985-8072004 Msa0754510:three_prime_UTR 25.0%
!! GATATTCCTTCATTTGATTT+AGG + chr5_2:8072282-8072301 Msa0754510:three_prime_UTR 25.0%
! AATTAAATTATGGCAAAGAG+CGG - chr5_2:8072403-8072422 None:intergenic 25.0%
! AGCTTAAAAAAACTCTCAAT+TGG - chr5_2:8072439-8072458 None:intergenic 25.0%
!! TTTCTGTTTTATGGTTGATT+TGG + chr5_2:8072806-8072825 Msa0754510:three_prime_UTR 25.0%
! AAGATTTTGTGTTTGGTCAT+TGG + chr5_2:8069708-8069727 Msa0754510:five_prime_UTR 30.0%
AAGGAATGCAATAAGACATT+TGG + chr5_2:8069841-8069860 Msa0754510:five_prime_UTR 30.0%
AGGAATGCAATAAGACATTT+GGG + chr5_2:8069842-8069861 Msa0754510:five_prime_UTR 30.0%
! AATAAGACATTTGGGATGAT+GGG + chr5_2:8069850-8069869 Msa0754510:five_prime_UTR 30.0%
TCTAACTTTCATCACATTCA+TGG - chr5_2:8069933-8069952 None:intergenic 30.0%
TCTTTCTATAGTTAGCAAAG+TGG - chr5_2:8069970-8069989 None:intergenic 30.0%
AATGGTACGATAGATAAGTA+AGG + chr5_2:8069990-8070009 Msa0754510:intron 30.0%
ATGGTACGATAGATAAGTAA+GGG + chr5_2:8069991-8070010 Msa0754510:intron 30.0%
!! AGTGTCATTTAGTGATATTG+GGG + chr5_2:8070060-8070079 Msa0754510:intron 30.0%
TAGTGTTGTGATTCCTATTA+AGG + chr5_2:8070171-8070190 Msa0754510:intron 30.0%
AGTGTTGTGATTCCTATTAA+GGG + chr5_2:8070172-8070191 Msa0754510:intron 30.0%
! TAGTGTTGAGATTCCTATTA+AGG + chr5_2:8070254-8070273 Msa0754510:five_prime_UTR 30.0%
! AGTGTTGAGATTCCTATTAA+GGG + chr5_2:8070255-8070274 Msa0754510:five_prime_UTR 30.0%
!! CCAGTTTAACTTTTGGATTT+TGG - chr5_2:8070288-8070307 None:intergenic 30.0%
CCAAAATCCAAAAGTTAAAC+TGG + chr5_2:8070285-8070304 Msa0754510:five_prime_UTR 30.0%
!! AACAATGCCAGTTTAACTTT+TGG - chr5_2:8070295-8070314 None:intergenic 30.0%
AAAAGTTAAACTGGCATTGT+TGG + chr5_2:8070294-8070313 Msa0754510:five_prime_UTR 30.0%
! CTTTGTTTCTTTGATGTGTT+TGG + chr5_2:8070426-8070445 Msa0754510:intron 30.0%
ATCCTCTCTTTCATTTATAG+GGG + chr5_2:8070491-8070510 Msa0754510:intron 30.0%
GGAAACAAATGAAAAGGAAT+TGG + chr5_2:8070571-8070590 Msa0754510:CDS 30.0%
TCATGAAACAAGTCATCAAA+TGG + chr5_2:8070594-8070613 Msa0754510:CDS 30.0%
AAAGGTCTTAAACTTATCTG+CGG - chr5_2:8070791-8070810 None:intergenic 30.0%
TAATGAAACAATTGCTCTAC+CGG + chr5_2:8071078-8071097 Msa0754510:three_prime_UTR 30.0%
!! TTAACAACAGAGTTCTGAAT+GGG - chr5_2:8071511-8071530 None:intergenic 30.0%
CTTCATAACCACATTATTGA+AGG + chr5_2:8071610-8071629 Msa0754510:three_prime_UTR 30.0%
!! ATCTTGTGTCTACTTTTCTT+TGG - chr5_2:8071810-8071829 None:intergenic 30.0%
ATAATCATGCTGACAGTTTA+TGG + chr5_2:8071951-8071970 Msa0754510:three_prime_UTR 30.0%
! TACAGAATTTAGAGTCGTAA+AGG - chr5_2:8072106-8072125 None:intergenic 30.0%
! TTTTGTCTCTTTGCATGATT+TGG + chr5_2:8072173-8072192 Msa0754510:three_prime_UTR 30.0%
TGACTACCTAAATCAAATGA+AGG - chr5_2:8072291-8072310 None:intergenic 30.0%
TATTCTGCAATGGTTAAATC+AGG - chr5_2:8072344-8072363 None:intergenic 30.0%
ACTCTCAATTGGAAGTTATA+TGG - chr5_2:8072428-8072447 None:intergenic 30.0%
AACGAAAAAAATGTCTTCTG+TGG - chr5_2:8072487-8072506 None:intergenic 30.0%
!!! CGATCTTGGTTATTTTTACA+AGG + chr5_2:8072590-8072609 Msa0754510:three_prime_UTR 30.0%
TTCTTCGATACCAAACAACA+TGG - chr5_2:8069576-8069595 None:intergenic 35.0%
TGAATTTATGTCTGGTGTAG+CGG + chr5_2:8069751-8069770 Msa0754510:five_prime_UTR 35.0%
TATTGCATTCCTTGCAATGA+TGG - chr5_2:8069834-8069853 None:intergenic 35.0%
! CAATAAGACATTTGGGATGA+TGG + chr5_2:8069849-8069868 Msa0754510:five_prime_UTR 35.0%
TCAAAGTTGAGAGGCTAAAT+TGG - chr5_2:8069881-8069900 None:intergenic 35.0%
ACGAATGAAAGTGATGATCA+TGG - chr5_2:8070111-8070130 None:intergenic 35.0%
GCTAAGATCAGCAAAATTTC+AGG + chr5_2:8070345-8070364 Msa0754510:CDS 35.0%
ACAAAGCAACAAAATCACAG+AGG - chr5_2:8070412-8070431 None:intergenic 35.0%
TACCCCTATAAATGAAAGAG+AGG - chr5_2:8070496-8070515 None:intergenic 35.0%
ATTGTTTGTAGCAATTCTGC+AGG + chr5_2:8070536-8070555 Msa0754510:intron 35.0%
! TTCTGCAGGTATGAAAGTTT+TGG + chr5_2:8070550-8070569 Msa0754510:intron 35.0%
AAACAAGTCATCAAATGGAC+TGG + chr5_2:8070599-8070618 Msa0754510:CDS 35.0%
GCAAGGTCAATACTATGTTT+GGG - chr5_2:8070628-8070647 None:intergenic 35.0%
TGCAAGGTCAATACTATGTT+TGG - chr5_2:8070629-8070648 None:intergenic 35.0%
! GCAGATAAGTTTAAGACCTT+TGG + chr5_2:8070790-8070809 Msa0754510:CDS 35.0%
! TCCATGTTTTGCAAAGATTG+TGG + chr5_2:8070823-8070842 Msa0754510:CDS 35.0%
ACCACAATCTTTGCAAAACA+TGG - chr5_2:8070827-8070846 None:intergenic 35.0%
AAAGATTGTGGTGTCTTTGA+TGG + chr5_2:8070835-8070854 Msa0754510:CDS 35.0%
TGAAGTGTATTCATACCTTG+AGG - chr5_2:8071141-8071160 None:intergenic 35.0%
! TCACAAGATAAAAGGTATGC+TGG + chr5_2:8071178-8071197 Msa0754510:intron 35.0%
ACAGATAAGTTTCAATGCTG+AGG - chr5_2:8071296-8071315 None:intergenic 35.0%
GCACTTTATCGAGCAAAAAA+AGG + chr5_2:8071465-8071484 Msa0754510:three_prime_UTR 35.0%
!! GTTAACAACAGAGTTCTGAA+TGG - chr5_2:8071512-8071531 None:intergenic 35.0%
! TAACTGGATTTTGCCAAGTT+AGG + chr5_2:8071638-8071657 Msa0754510:three_prime_UTR 35.0%
! AACTGGATTTTGCCAAGTTA+GGG + chr5_2:8071639-8071658 Msa0754510:three_prime_UTR 35.0%
!! AGAGTGATGCTTTCTAAGAT+GGG + chr5_2:8072019-8072038 Msa0754510:three_prime_UTR 35.0%
AACAGCTATAAGTAGATCCT+CGG - chr5_2:8072202-8072221 None:intergenic 35.0%
! AGCACATTGTTATTCTGCAA+TGG - chr5_2:8072354-8072373 None:intergenic 35.0%
AAAAAATGTCTTCTGTGGAG+TGG - chr5_2:8072482-8072501 None:intergenic 35.0%
! GTTTATGGGAGCATGAATTA+TGG + chr5_2:8072519-8072538 Msa0754510:three_prime_UTR 35.0%
AACTTAGGTCTGGATTTGAA+GGG - chr5_2:8072663-8072682 None:intergenic 35.0%
AAACTTAGGTCTGGATTTGA+AGG - chr5_2:8072664-8072683 None:intergenic 35.0%
GCTCTGCAGATTTATTTACC+AGG + chr5_2:8069528-8069547 Msa0754510:five_prime_UTR 40.0%
! GCAATCCTCACAGTTTTCTT+CGG + chr5_2:8069794-8069813 Msa0754510:five_prime_UTR 40.0%
GTCATTTAGTGATATTGGGG+TGG + chr5_2:8070063-8070082 Msa0754510:intron 40.0%
ATTGGAGCAACACCCTTAAT+AGG - chr5_2:8070187-8070206 None:intergenic 40.0%
! TTTGGAGCAACACCCTTAAT+AGG - chr5_2:8070270-8070289 None:intergenic 40.0%
GTGAACATAAGCGAAATGCA+AGG + chr5_2:8070321-8070340 Msa0754510:exon 40.0%
CTTCATAGACAACACATGCA+AGG - chr5_2:8070645-8070664 None:intergenic 40.0%
GTCTATGAAGATCAAAGTGC+AGG + chr5_2:8070655-8070674 Msa0754510:CDS 40.0%
! TTCTAATTTTCGGTGAGGGT+AGG - chr5_2:8070690-8070709 None:intergenic 40.0%
TGTCTTTGATGGAGAAGGTA+AGG + chr5_2:8070846-8070865 Msa0754510:intron 40.0%
GTCTTTGATGGAGAAGGTAA+GGG + chr5_2:8070847-8070866 Msa0754510:intron 40.0%
GTTCAATTTACAGCCTCATG+TGG + chr5_2:8070961-8070980 Msa0754510:intron 40.0%
! TTACAGCCTCATGTGGATTT+TGG + chr5_2:8070968-8070987 Msa0754510:intron 40.0%
! TACAGCCTCATGTGGATTTT+GGG + chr5_2:8070969-8070988 Msa0754510:intron 40.0%
GCATACACTCCATCAGTTTA+AGG - chr5_2:8071238-8071257 None:intergenic 40.0%
CGATAAAGTGCGCAATTGTT+GGG - chr5_2:8071456-8071475 None:intergenic 40.0%
TCGATAAAGTGCGCAATTGT+TGG - chr5_2:8071457-8071476 None:intergenic 40.0%
TATGAAGGGTCTAGCATCAT+GGG + chr5_2:8071553-8071572 Msa0754510:three_prime_UTR 40.0%
! GAGAGTGATGCTTTCTAAGA+TGG + chr5_2:8072018-8072037 Msa0754510:three_prime_UTR 40.0%
!! ATCCATTGGTCTTCTTGCAT+AGG - chr5_2:8072242-8072261 None:intergenic 40.0%
ACGAAAGAAGTTGCATCCAT+TGG - chr5_2:8072256-8072275 None:intergenic 40.0%
TGGAGTGGCTAATATATGAC+AGG - chr5_2:8072467-8072486 None:intergenic 40.0%
! AATTATGGTCCTGGTGTCAA+TGG + chr5_2:8072534-8072553 Msa0754510:three_prime_UTR 40.0%
CCACAAAAAGTTGCTACAGA+CGG - chr5_2:8072690-8072709 None:intergenic 40.0%
ATTTATGTCTGGTGTAGCGG+AGG + chr5_2:8069754-8069773 Msa0754510:five_prime_UTR 45.0%
TCTACTGCACCATCATTGCA+AGG + chr5_2:8069822-8069841 Msa0754510:five_prime_UTR 45.0%
!! GACATTTGGGATGATGGGTT+TGG + chr5_2:8069855-8069874 Msa0754510:five_prime_UTR 45.0%
! CATGGAAGTGTAGACACCAA+AGG - chr5_2:8070809-8070828 None:intergenic 45.0%
TGTGGTGTCTTTGATGGAGA+AGG + chr5_2:8070841-8070860 Msa0754510:CDS 45.0%
!!! GATTTTGGGTTGGCGATATC+TGG + chr5_2:8070983-8071002 Msa0754510:CDS 45.0%
GAGGTCAAAACCATGTTCCA+TGG - chr5_2:8071122-8071141 None:intergenic 45.0%
!!! GGAACATGGTTTTGACCTCA+AGG + chr5_2:8071123-8071142 Msa0754510:three_prime_UTR 45.0%
!! GCTGTGTTGCTTCCTTAAAC+TGG + chr5_2:8071210-8071229 Msa0754510:intron 45.0%
! CAGTTTAAGGCGCCAGTTTA+AGG - chr5_2:8071225-8071244 None:intergenic 45.0%
AAACTGGCGCCTTAAACTGA+TGG + chr5_2:8071226-8071245 Msa0754510:intron 45.0%
TGCTCGATTTCTCGACAACA+CGG + chr5_2:8071255-8071274 Msa0754510:intron 45.0%
AAAGTGCGCAATTGTTGGGA+GGG - chr5_2:8071452-8071471 None:intergenic 45.0%
TAAAGTGCGCAATTGTTGGG+AGG - chr5_2:8071453-8071472 None:intergenic 45.0%
ATGTCTTCCAGCCTGTATGA+AGG + chr5_2:8071538-8071557 Msa0754510:three_prime_UTR 45.0%
TGTCTTCCAGCCTGTATGAA+GGG + chr5_2:8071539-8071558 Msa0754510:three_prime_UTR 45.0%
TGATGCTAGACCCTTCATAC+AGG - chr5_2:8071552-8071571 None:intergenic 45.0%
GTATGAAGGGTCTAGCATCA+TGG + chr5_2:8071552-8071571 Msa0754510:three_prime_UTR 45.0%
AGAAAAAACGGGCCCTAACT+TGG - chr5_2:8071654-8071673 None:intergenic 45.0%
AGCTATAAGTAGATCCTCGG+AGG - chr5_2:8072199-8072218 None:intergenic 45.0%
AGCCTATGCAAGAAGACCAA+TGG + chr5_2:8072237-8072256 Msa0754510:three_prime_UTR 45.0%
GGATGCAACTTCTTTCGTCA+AGG + chr5_2:8072258-8072277 Msa0754510:three_prime_UTR 45.0%
CAACTTCTACCATTGACACC+AGG - chr5_2:8072546-8072565 None:intergenic 45.0%
! CTGGTGTCAATGGTAGAAGT+TGG + chr5_2:8072544-8072563 Msa0754510:three_prime_UTR 45.0%
CGATCTATATGCTGCGATCT+TGG + chr5_2:8072576-8072595 Msa0754510:three_prime_UTR 45.0%
CAAAAAGTTGCTACAGACGG+AGG - chr5_2:8072687-8072706 None:intergenic 45.0%
! CCGTCTGTAGCAACTTTTTG+TGG + chr5_2:8072687-8072706 Msa0754510:three_prime_UTR 45.0%
!! CTTTTTGTGGCTCTGTGTGT+AGG + chr5_2:8072700-8072719 Msa0754510:three_prime_UTR 45.0%
CTACCACCACTAAAACAGCA+TGG - chr5_2:8072754-8072773 None:intergenic 45.0%
!!! AATTATTATTTTCTAATTTT+CGG - chr5_2:8070700-8070719 None:intergenic 5.0%
!! TTAAATAAAAAAAAGTTTAT+GGG + chr5_2:8072505-8072524 Msa0754510:three_prime_UTR 5.0%
ACACGCCGAAGAAAACTGTG+AGG - chr5_2:8069802-8069821 None:intergenic 50.0%
!! GCCTCATGTGGATTTTGGGT+TGG + chr5_2:8070973-8070992 Msa0754510:intron 50.0%
GCCAACCCAAAATCCACATG+AGG - chr5_2:8070977-8070996 None:intergenic 50.0%
!! TTTGGGTTGGCGATATCTGG+AGG + chr5_2:8070986-8071005 Msa0754510:CDS 50.0%
!! TTGGGTTGGCGATATCTGGA+GGG + chr5_2:8070987-8071006 Msa0754510:CDS 50.0%
ATGTTCCATGGAGAGAGCTG+TGG - chr5_2:8071110-8071129 None:intergenic 50.0%
ACAGCTCTCTCCATGGAACA+TGG + chr5_2:8071109-8071128 Msa0754510:three_prime_UTR 50.0%
! TAAGGGAACCTCGAGTTGTG+AGG + chr5_2:8071401-8071420 Msa0754510:three_prime_UTR 50.0%
! AAGGGAACCTCGAGTTGTGA+GGG + chr5_2:8071402-8071421 Msa0754510:three_prime_UTR 50.0%
AAACCAACCCTCACAACTCG+AGG - chr5_2:8071412-8071431 None:intergenic 50.0%
! TTTGCATGATTTGGCCTCCG+AGG + chr5_2:8072182-8072201 Msa0754510:three_prime_UTR 50.0%
! GGGAGCATGAATTATGGTCC+TGG + chr5_2:8072525-8072544 Msa0754510:three_prime_UTR 50.0%
TTGTTGCCATGATTGCAGCG+TGG + chr5_2:8072625-8072644 Msa0754510:three_prime_UTR 50.0%
CACTAACCACGCTGCAATCA+TGG - chr5_2:8072634-8072653 None:intergenic 50.0%
TTGCAGCGTGGTTAGTGTGT+TGG + chr5_2:8072637-8072656 Msa0754510:three_prime_UTR 50.0%
AGACGGAGGAAACTTAGGTC+TGG - chr5_2:8072673-8072692 None:intergenic 50.0%
GCTACAGACGGAGGAAACTT+AGG - chr5_2:8072678-8072697 None:intergenic 50.0%
! TTTGTGGCTCTGTGTGTAGG+TGG + chr5_2:8072703-8072722 Msa0754510:three_prime_UTR 50.0%
!! GTGTGTAGGTGGTGTTGTTG+TGG + chr5_2:8072714-8072733 Msa0754510:three_prime_UTR 50.0%
!! TAGGTGGTGTTGTTGTGGTC+AGG + chr5_2:8072719-8072738 Msa0754510:three_prime_UTR 50.0%
!!! AGCAGGCCATGCTGTTTTAG+TGG + chr5_2:8072745-8072764 Msa0754510:three_prime_UTR 50.0%
!!! AGGCCATGCTGTTTTAGTGG+TGG + chr5_2:8072748-8072767 Msa0754510:three_prime_UTR 50.0%
!! TGGGTTGGCGATATCTGGAG+GGG + chr5_2:8070988-8071007 Msa0754510:CDS 55.0%
GAGAGAGCTGTGGCGAATTC+CGG - chr5_2:8071100-8071119 None:intergenic 55.0%
ATTCGCCACAGCTCTCTCCA+TGG + chr5_2:8071102-8071121 Msa0754510:three_prime_UTR 55.0%
! GAACCTCGAGTTGTGAGGGT+TGG + chr5_2:8071406-8071425 Msa0754510:three_prime_UTR 55.0%
GCTAGACCCTTCATACAGGC+TGG - chr5_2:8071548-8071567 None:intergenic 55.0%
GAAGGGTCTAGCATCATGGG+AGG + chr5_2:8071556-8071575 Msa0754510:three_prime_UTR 55.0%
TTGTTGTGGTCAGGTGCAGC+AGG + chr5_2:8072728-8072747 Msa0754510:three_prime_UTR 55.0%
! ATGTCTGGTGTAGCGGAGGC+AGG + chr5_2:8069758-8069777 Msa0754510:five_prime_UTR 60.0%
! TGTCTGGTGTAGCGGAGGCA+GGG + chr5_2:8069759-8069778 Msa0754510:five_prime_UTR 60.0%
! TGTAGCGGAGGCAGGGAGGT+GGG + chr5_2:8069766-8069785 Msa0754510:five_prime_UTR 65.0%
! CTGGTGTAGCGGAGGCAGGG+AGG + chr5_2:8069762-8069781 Msa0754510:five_prime_UTR 70.0%
! GTGTAGCGGAGGCAGGGAGG+TGG + chr5_2:8069765-8069784 Msa0754510:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 8069506 8072838 8069506 ID=Msa0754510;Name=Msa0754510
chr5_2 mRNA 8069506 8072838 8069506 ID=Msa0754510-mRNA-1;Parent=Msa0754510;Name=Msa0754510-mRNA-1;_AED=0.08;_eAED=0.08;_QI=564|1|1|1|0.66|0.42|7|1592|99
chr5_2 exon 8069506 8069584 8069506 ID=Msa0754510-mRNA-1:exon:3652;Parent=Msa0754510-mRNA-1
chr5_2 exon 8069610 8069993 8069610 ID=Msa0754510-mRNA-1:exon:3653;Parent=Msa0754510-mRNA-1
chr5_2 exon 8070235 8070366 8070235 ID=Msa0754510-mRNA-1:exon:3654;Parent=Msa0754510-mRNA-1
chr5_2 exon 8070558 8070676 8070558 ID=Msa0754510-mRNA-1:exon:3655;Parent=Msa0754510-mRNA-1
chr5_2 exon 8070761 8070862 8070761 ID=Msa0754510-mRNA-1:exon:3656;Parent=Msa0754510-mRNA-1
chr5_2 exon 8070974 8071144 8070974 ID=Msa0754510-mRNA-1:exon:3657;Parent=Msa0754510-mRNA-1
chr5_2 exon 8071370 8072838 8071370 ID=Msa0754510-mRNA-1:exon:3658;Parent=Msa0754510-mRNA-1
chr5_2 five_prime_UTR 8069506 8069584 8069506 ID=Msa0754510-mRNA-1:five_prime_utr;Parent=Msa0754510-mRNA-1
chr5_2 five_prime_UTR 8069610 8069993 8069610 ID=Msa0754510-mRNA-1:five_prime_utr;Parent=Msa0754510-mRNA-1
chr5_2 five_prime_UTR 8070235 8070335 8070235 ID=Msa0754510-mRNA-1:five_prime_utr;Parent=Msa0754510-mRNA-1
chr5_2 CDS 8070336 8070366 8070336 ID=Msa0754510-mRNA-1:cds;Parent=Msa0754510-mRNA-1
chr5_2 CDS 8070558 8070676 8070558 ID=Msa0754510-mRNA-1:cds;Parent=Msa0754510-mRNA-1
chr5_2 CDS 8070761 8070862 8070761 ID=Msa0754510-mRNA-1:cds;Parent=Msa0754510-mRNA-1
chr5_2 CDS 8070974 8071021 8070974 ID=Msa0754510-mRNA-1:cds;Parent=Msa0754510-mRNA-1
chr5_2 three_prime_UTR 8071022 8071144 8071022 ID=Msa0754510-mRNA-1:three_prime_utr;Parent=Msa0754510-mRNA-1
chr5_2 three_prime_UTR 8071370 8072838 8071370 ID=Msa0754510-mRNA-1:three_prime_utr;Parent=Msa0754510-mRNA-1
Gene Sequence

>Msa0754510

ATGCAAGGTGCTAAGATCAGCAAAATTTCAGGTATGAAAGTTTTGGAAACAAATGAAAAGGAATTGGTCATGAAACAAGTCATCAAATGGACTGGCAACCCAAACATAGTATTGACCTTGCATGTGTTGTCTATGAAGATCAAAGTGCAGTTGGTAGACTTACAAGTTTTTGCGACGCCGCAGATAAGTTTAAGACCTTTGGTGTCTACACTTCCATGTTTTGCAAAGATTGTGGTGTCTTTGATGGAGAAGCCTCATGTGGATTTTGGGTTGGCGATATCTGGAGGGGACATCATATAG

Protein sequence

>Msa0754510

MQGAKISKISGMKVLETNEKELVMKQVIKWTGNPNIVLTLHVLSMKIKVQLVDLQVFATPQISLRPLVSTLPCFAKIVVSLMEKPHVDFGLAISGGDII*