AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0756210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756210 MtrunA17_Chr5g0401341 98.730 630 8 0 1 630 1 630 0.0 1287
Msa0756210 MtrunA17_Chr1g0207461 62.323 637 221 9 1 630 1 625 0.0 766
Msa0756210 MtrunA17_Chr1g0150191 50.233 645 278 13 1 630 1 617 0.0 573
Msa0756210 MtrunA17_Chr8g0367891 43.402 629 279 17 1 593 1 588 7.45e-146 436
Msa0756210 MtrunA17_Chr5g0412591 40.930 645 294 14 1 599 1 604 2.26e-138 417
Msa0756210 MtrunA17_Chr4g0076521 42.857 504 252 8 1 490 1 482 4.58e-135 408
Msa0756210 MtrunA17_Chr4g0050021 38.908 586 304 12 5 545 23 599 1.40e-134 409
Msa0756210 MtrunA17_Chr2g0279481 38.851 592 302 11 5 545 23 605 1.45e-130 399
Msa0756210 MtrunA17_Chr2g0303541 42.351 536 272 11 1 508 1 527 3.40e-128 392
Msa0756210 MtrunA17_Chr2g0290741 39.521 501 263 8 1 490 1 472 1.51e-117 362
Msa0756210 MtrunA17_Chr2g0285511 38.198 555 309 13 1 535 1 541 5.41e-109 340
Msa0756210 MtrunA17_Chr8g0382231 33.045 578 281 14 11 545 38 552 3.08e-103 326
Msa0756210 MtrunA17_Chr1g0181181 38.224 518 260 11 1 490 1 486 1.11e-102 323
Msa0756210 MtrunA17_Chr2g0320691 38.247 502 276 9 27 500 23 518 1.13e-102 325
Msa0756210 MtrunA17_Chr4g0010091 38.493 491 274 10 19 492 21 500 5.57e-102 323
Msa0756210 MtrunA17_Chr5g0401451 34.295 624 363 15 24 630 37 630 2.39e-101 322
Msa0756210 MtrunA17_Chr4g0053841 36.756 487 286 7 24 501 10 483 2.13e-99 315
Msa0756210 MtrunA17_Chr8g0374011 36.523 512 263 11 22 483 15 514 2.93e-94 304
Msa0756210 MtrunA17_Chr1g0199631 39.440 464 251 13 45 487 8 462 1.31e-93 300
Msa0756210 MtrunA17_Chr1g0195911 35.918 490 272 9 25 492 34 503 7.06e-93 299
Msa0756210 MtrunA17_Chr7g0245201 36.100 518 286 14 23 515 57 554 1.25e-89 291
Msa0756210 MtrunA17_Chr7g0268781 34.442 511 289 11 25 510 34 523 1.76e-84 277
Msa0756210 MtrunA17_Chr3g0108331 34.511 481 265 9 26 491 23 468 7.46e-84 274
Msa0756210 MtrunA17_Chr1g0191711 30.943 488 280 8 28 503 59 501 3.65e-74 248
Msa0756210 MtrunA17_Chr5g0432861 31.174 494 281 9 26 497 24 480 9.18e-72 242
Msa0756210 MtrunA17_Chr2g0332281 39.649 285 144 4 212 483 24 293 2.42e-55 194
Msa0756210 MtrunA17_Chr4g0003891 39.576 283 145 5 212 483 46 313 1.51e-53 189
Msa0756210 MtrunA17_Chr1g0163311 27.083 480 294 12 30 481 6 457 1.70e-44 166
Msa0756210 MtrunA17_Chr4g0023801 26.580 459 292 11 36 481 14 440 4.06e-37 145
Msa0756210 MtrunA17_Chr4g0037661 24.390 492 317 9 28 488 4 471 7.79e-35 139
Msa0756210 MtrunA17_Chr2g0280541 26.509 381 250 9 94 469 3 358 4.60e-28 117
Msa0756210 MtrunA17_Chr1g0206621 36.000 150 92 2 31 177 72 220 8.79e-23 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756210 AT2G14820.2 59.167 600 215 9 1 589 1 581 0.0 690
Msa0756210 AT2G14820.1 59.167 600 215 9 1 589 1 581 0.0 690
Msa0756210 AT4G37590.1 55.412 619 192 17 1 600 1 554 0.0 635
Msa0756210 AT5G67440.3 56.340 623 197 15 1 611 1 560 0.0 632
Msa0756210 AT5G67440.1 56.340 623 197 15 1 611 1 560 0.0 632
Msa0756210 AT5G67440.2 54.017 585 188 16 42 611 5 523 0.0 558
Msa0756210 AT2G23050.1 57.661 496 163 8 1 489 1 456 0.0 544
Msa0756210 AT4G31820.1 46.865 606 253 13 1 602 1 541 7.54e-176 511
Msa0756210 AT1G67900.5 43.857 643 288 15 1 592 1 621 7.43e-159 470
Msa0756210 AT1G67900.1 43.857 643 288 15 1 592 1 621 7.43e-159 470
Msa0756210 AT1G67900.3 43.857 643 288 15 1 592 1 621 7.43e-159 470
Msa0756210 AT1G67900.6 43.857 643 288 15 1 592 1 621 7.43e-159 470
Msa0756210 AT1G67900.2 43.857 643 288 15 1 592 1 621 7.43e-159 470
Msa0756210 AT1G67900.4 43.857 643 288 15 1 592 1 621 7.43e-159 470
Msa0756210 AT4G31820.2 45.487 554 231 14 54 602 1 488 5.63e-147 436
Msa0756210 AT2G23050.2 55.000 380 130 7 111 489 1 340 3.40e-131 390
Msa0756210 AT3G26490.1 42.533 529 260 12 1 495 1 519 2.02e-127 388
Msa0756210 AT3G26490.3 42.533 529 260 12 1 495 1 519 2.02e-127 388
Msa0756210 AT3G26490.4 42.533 529 260 12 1 495 1 519 2.02e-127 388
Msa0756210 AT5G47800.3 39.882 509 269 9 1 494 1 487 8.55e-124 378
Msa0756210 AT5G47800.1 39.882 509 269 9 1 494 1 487 8.55e-124 378
Msa0756210 AT5G47800.4 39.882 509 269 9 1 494 1 487 8.55e-124 378
Msa0756210 AT5G03250.1 41.111 540 279 14 1 514 1 527 5.41e-122 374
Msa0756210 AT5G47800.2 39.686 509 270 8 1 494 114 600 8.43e-122 376
Msa0756210 AT1G30440.1 39.114 542 289 10 1 509 1 534 1.19e-119 370
Msa0756210 AT5G13600.1 40.237 507 273 10 1 487 1 497 3.51e-110 343
Msa0756210 AT3G26490.2 40.987 466 231 12 1 432 1 456 4.72e-100 314
Msa0756210 AT3G44820.1 36.414 541 300 11 8 512 5 537 9.27e-100 318
Msa0756210 AT5G67385.1 39.490 471 256 9 24 483 22 474 7.20e-99 315
Msa0756210 AT5G48800.1 39.241 474 265 8 22 489 36 492 1.42e-96 309
Msa0756210 AT1G03010.2 35.688 552 304 11 25 546 7 537 3.44e-94 302
Msa0756210 AT1G03010.3 35.612 556 307 11 21 546 29 563 6.57e-94 302
Msa0756210 AT1G03010.1 35.688 552 304 11 25 546 34 564 9.14e-94 302
Msa0756210 AT5G66560.1 34.806 566 270 13 22 505 14 562 6.07e-91 295
Msa0756210 AT2G47860.1 37.267 483 256 11 25 483 35 494 1.12e-90 294
Msa0756210 AT5G10250.2 33.592 515 257 9 11 483 35 506 9.09e-89 288
Msa0756210 AT3G08660.1 36.957 506 272 16 23 515 30 501 2.49e-88 286
Msa0756210 AT5G67385.4 38.702 447 245 9 48 483 1 429 8.13e-88 284
Msa0756210 AT5G67385.5 38.702 447 245 9 48 483 1 429 8.13e-88 284
Msa0756210 AT5G67385.2 38.702 447 245 9 48 483 1 429 8.13e-88 284
Msa0756210 AT5G67385.3 38.702 447 245 9 48 483 1 429 8.13e-88 284
Msa0756210 AT5G10250.1 34.274 496 251 9 18 483 41 491 7.09e-87 283
Msa0756210 AT5G66560.3 34.672 548 259 13 40 505 3 533 3.08e-86 282
Msa0756210 AT2G47860.3 35.363 509 253 12 25 483 35 517 1.95e-85 281
Msa0756210 AT3G08570.1 34.855 482 284 10 23 489 30 496 7.95e-84 275
Msa0756210 AT5G66560.4 36.842 475 246 11 68 505 66 523 7.37e-83 273
Msa0756210 AT3G50840.1 36.626 486 247 11 22 483 11 459 5.72e-82 269
Msa0756210 AT5G03250.2 38.876 427 226 11 111 514 1 415 6.36e-82 266
Msa0756210 AT2G30520.1 34.864 479 257 8 24 483 27 469 1.14e-80 266
Msa0756210 AT3G08660.3 36.632 475 254 16 54 515 1 441 7.12e-79 259
Msa0756210 AT3G49970.1 35.469 437 225 9 40 468 7 394 9.59e-76 251
Msa0756210 AT3G49970.2 35.469 437 225 9 40 468 7 394 9.59e-76 251
Msa0756210 AT2G30520.2 34.430 456 244 8 47 483 2 421 1.80e-72 243
Msa0756210 AT2G30520.3 34.430 456 244 8 47 483 2 421 1.80e-72 243
Msa0756210 AT3G50840.2 35.652 460 235 11 48 483 1 423 1.38e-70 238
Msa0756210 AT3G50840.3 35.652 460 235 11 48 483 1 423 1.38e-70 238
Msa0756210 AT2G47860.4 34.862 436 237 11 21 432 31 443 5.06e-68 229
Msa0756210 AT3G08660.2 36.364 418 226 13 23 432 30 415 1.11e-65 222
Msa0756210 AT2G47860.6 33.115 459 237 12 21 432 31 466 6.62e-63 216
Msa0756210 AT5G66560.2 32.505 483 237 12 22 432 14 479 1.45e-62 215
Msa0756210 AT5G64330.2 40.959 271 137 6 7 259 33 298 2.06e-60 213
Msa0756210 AT5G64330.2 41.379 261 122 3 270 499 373 633 4.86e-54 196
Msa0756210 AT2G47860.5 35.250 400 208 10 111 483 1 376 2.99e-60 210
Msa0756210 AT2G47860.2 35.250 400 208 10 111 483 1 376 2.99e-60 210
Msa0756210 AT5G64330.1 40.959 271 137 6 7 259 33 298 5.89e-60 214
Msa0756210 AT5G64330.1 39.465 299 155 5 270 545 373 668 9.18e-56 202
Msa0756210 AT5G48130.1 28.629 496 297 13 25 502 37 493 6.88e-57 203
Msa0756210 AT5G64330.3 41.379 261 122 3 270 499 314 574 1.94e-54 196
Msa0756210 AT5G64330.3 40.083 242 122 6 37 259 2 239 9.86e-50 183
Msa0756210 AT1G52770.1 33.898 354 198 6 212 545 28 365 1.35e-52 187
Msa0756210 AT3G15570.1 34.343 297 157 6 212 485 29 310 1.82e-45 168
Msa0756210 AT5G17580.2 27.651 481 315 8 14 487 7 461 2.43e-43 164
Msa0756210 AT5G17580.1 28.051 467 303 8 28 487 6 446 4.03e-42 160
Msa0756210 AT3G19850.1 25.113 442 291 8 68 490 52 472 7.40e-41 157
Msa0756210 AT1G50280.1 25.053 471 316 11 29 477 5 460 3.34e-39 151
Msa0756210 AT1G50280.2 25.882 425 285 9 68 477 18 427 5.56e-39 150
Msa0756210 AT3G03510.1 29.056 413 233 10 76 483 4 361 1.50e-38 148
Msa0756210 AT3G22104.1 25.714 455 285 15 28 468 5 420 1.66e-28 120
Msa0756210 AT3G22104.4 24.737 380 239 11 98 468 4 345 1.12e-19 92.4
Msa0756210 AT3G22104.2 24.737 380 239 11 98 468 4 345 1.12e-19 92.4
Msa0756210 AT3G22104.3 24.737 380 239 11 98 468 4 345 1.12e-19 92.4
Msa0756210 AT3G49900.1 42.857 98 49 4 387 482 214 306 9.88e-15 77.8
Msa0756210 AT3G49900.2 41.584 101 49 5 387 482 214 309 4.63e-13 72.4

Find 222 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGATATTGTTTCAGGTTTA+TGG 0.106681 5_2:-10276693 None:intergenic
TGCCATTGACATGTATTTAA+AGG 0.151112 5_2:+10280699 Msa0756210:CDS
CCACTTTCTCTCTCAACTTA+TGG 0.174156 5_2:-10276440 None:intergenic
GGTGATTTGAAAAGCTATTT+TGG 0.174997 5_2:+10277691 Msa0756210:five_prime_UTR
CACAAAGAATAGATTATTAT+TGG 0.178237 5_2:+10280225 Msa0756210:CDS
GAAAACACAGATATTGTTTC+AGG 0.209047 5_2:-10276700 None:intergenic
CGGTTTATTGCCGGTAGATA+TGG 0.212856 5_2:+10280258 Msa0756210:CDS
TTTATCTTGGCCGGTCTCTT+TGG 0.239494 5_2:+10277423 Msa0756210:five_prime_UTR
CACAAACTCTTAACCAAGTT+TGG 0.239988 5_2:-10277663 None:intergenic
ACAACCAATGGAAATGTTTC+CGG 0.248773 5_2:+10280118 Msa0756210:CDS
GAACATGTTGCTTACTAAAA+TGG 0.270449 5_2:-10277455 None:intergenic
CTGTTTAAGAACTAGTTATT+AGG 0.272003 5_2:+10281949 Msa0756210:three_prime_UTR
AAGCTTAGAGAATAACTTCT+TGG 0.287524 5_2:-10281280 None:intergenic
AAAATTATGTTTCTGAATCT+TGG 0.287780 5_2:-10277246 None:intergenic
AGAAACAAAGAAAGGGAAAA+AGG 0.292827 5_2:+10276366 None:intergenic
AAGTGGGAACATTCTGAAAT+TGG 0.292864 5_2:+10276457 Msa0756210:five_prime_UTR
CATTGTTGCAATTTATTTGC+AGG 0.311860 5_2:+10281897 Msa0756210:three_prime_UTR
AGATCAAAGTAGAAGATAAA+AGG 0.321417 5_2:-10277608 None:intergenic
TGAATGTTGAGTATGGAATT+TGG 0.329924 5_2:+10277127 Msa0756210:five_prime_UTR
CTGATCTTCCCGGTTCCATC+AGG 0.334384 5_2:+10281019 Msa0756210:CDS
TTCGATGGAAGACGAATTGC+AGG 0.353029 5_2:+10280501 Msa0756210:CDS
CAACCAATGGAAATGTTTCC+GGG 0.363516 5_2:+10280119 Msa0756210:CDS
GAAGTATTTGATACCATCTT+GGG 0.363641 5_2:-10280535 None:intergenic
CAAAAGATGAGGCTTGAAAA+AGG 0.364405 5_2:-10276544 None:intergenic
AAAATGATGGAGATAATGTT+AGG 0.372524 5_2:+10277776 Msa0756210:CDS
AGAAGTTATTCTCTAAGCTT+TGG 0.373875 5_2:+10281283 Msa0756210:CDS
GACTATTGTCGGTTTATTGC+CGG 0.376124 5_2:+10280249 Msa0756210:CDS
CGACCATGGAAGAAGTGATT+TGG 0.379163 5_2:-10279861 None:intergenic
CAAACTTGGTTAAGAGTTTG+TGG 0.383904 5_2:+10277664 Msa0756210:five_prime_UTR
ATGCAATGCCCTGATGGAAC+CGG 0.384464 5_2:-10281028 None:intergenic
AGAATAACTTCTTGGACATA+AGG 0.384603 5_2:-10281272 None:intergenic
ATTCACATCCACGACATTCC+TGG 0.387097 5_2:+10279626 Msa0756210:CDS
ATTGAAAGTGGCTATTCAAC+TGG 0.388498 5_2:+10280312 Msa0756210:CDS
AAGGTTGCCTGGTTTCAATA+AGG 0.390063 5_2:+10280180 Msa0756210:CDS
CGAAGTATTTGATACCATCT+TGG 0.390134 5_2:-10280536 None:intergenic
TTGCCTAGTGTAGTTTGTAT+TGG 0.395707 5_2:+10281785 Msa0756210:three_prime_UTR
TCCTTTACGTGTCGTTGTAC+AGG 0.397548 5_2:+10280936 Msa0756210:CDS
CGGCCAAGATAAACCATGTT+AGG 0.398977 5_2:-10277413 None:intergenic
TCTTCCACCCACCAATCCTT+TGG 0.399577 5_2:-10280046 None:intergenic
AAATACTTCGAGCAAGATAA+AGG 0.402925 5_2:+10280549 Msa0756210:CDS
AACAATGACGGTGGTGGTAT+AGG 0.404070 5_2:+10281210 Msa0756210:CDS
TCGATCACTTTGGTAGCATT+AGG 0.404204 5_2:+10281481 Msa0756210:three_prime_UTR
GCACATATTTCAAAAGCAAC+AGG 0.406384 5_2:-10279653 None:intergenic
AAGAAACACAAAGGTTTAGT+TGG 0.408170 5_2:-10276661 None:intergenic
ATCTAACTAGCCTTGGTTTG+TGG 0.408714 5_2:+10277546 Msa0756210:five_prime_UTR
TCTAACTAGCCTTGGTTTGT+GGG 0.409928 5_2:+10277547 Msa0756210:five_prime_UTR
TGATTATAGTACAACAAAAC+CGG 0.410417 5_2:-10281631 None:intergenic
TGGTTAAGAGTTTGTGGAGT+AGG 0.420229 5_2:+10277670 Msa0756210:five_prime_UTR
AGGTTGCCTGGTTTCAATAA+GGG 0.420841 5_2:+10280181 Msa0756210:CDS
TCTCCTAACATGGTTTATCT+TGG 0.424055 5_2:+10277410 Msa0756210:five_prime_UTR
CTGACATAGTCGTTAATGTT+GGG 0.428946 5_2:+10279341 Msa0756210:CDS
TAGTGTGTGAATGTTGAGTA+TGG 0.431493 5_2:+10277120 Msa0756210:five_prime_UTR
GAAAAGAATATGTAGGTTGA+TGG 0.432349 5_2:+10280858 Msa0756210:CDS
ACGAGCACTCCTGATCTTCC+CGG 0.435726 5_2:+10281009 Msa0756210:CDS
CTCGCTGAAGTTATTGAAAG+TGG 0.436588 5_2:+10280300 Msa0756210:CDS
CATATATTTGTTCAGGTATG+TGG 0.437799 5_2:+10279303 Msa0756210:intron
AAACTGAGAAGAGGCAGATT+AGG 0.438663 5_2:-10280616 None:intergenic
GGTTTATTGCCGGTAGATAT+GGG 0.439454 5_2:+10280259 Msa0756210:CDS
CTGATGGAACCGGGAAGATC+AGG 0.442940 5_2:-10281018 None:intergenic
AACAGTAGAAGCAGGGCTTT+CGG 0.443529 5_2:-10281349 None:intergenic
CTTGGTTTGTGGGAAAGATT+CGG 0.444335 5_2:+10277557 Msa0756210:five_prime_UTR
AAGATGAAGTTTATGAAACT+TGG 0.446570 5_2:+10277733 Msa0756210:exon
GAATGTCTCCTACTTCTAGA+TGG 0.446578 5_2:-10281393 None:intergenic
CCATAAGTTGAGAGAGAAAG+TGG 0.447068 5_2:+10276440 Msa0756210:five_prime_UTR
GTGGTTCTCACGGTAGTTCA+AGG 0.447533 5_2:+10281055 Msa0756210:CDS
AAATTTCATCTAACTAGCCT+TGG 0.450635 5_2:+10277539 Msa0756210:five_prime_UTR
AAAAGCTCCCATCGGAAAAT+GGG 0.457088 5_2:+10279981 Msa0756210:CDS
AACAAAACCGGGTCCCTCAT+AGG 0.460036 5_2:-10281619 None:intergenic
TTATTATTGGAGACTATTGT+CGG 0.461332 5_2:+10280238 Msa0756210:CDS
CATTGGTTGTAATAGTTGAC+AGG 0.463502 5_2:-10280105 None:intergenic
AGTGGTCATACACATATAAC+AGG 0.463792 5_2:+10279957 Msa0756210:CDS
TTTGTTGTTGTTTCCAACAA+TGG 0.469010 5_2:-10277215 None:intergenic
TCCTCAACAACAGTAGAAGC+AGG 0.469108 5_2:-10281357 None:intergenic
CCACTTAAGATGAGCCTATG+AGG 0.469406 5_2:+10281605 Msa0756210:three_prime_UTR
TGCTGTTTCTGTCACTACTC+TGG 0.469581 5_2:-10281185 None:intergenic
GATGTACGAGACCATTGAAA+AGG 0.472920 5_2:+10279754 Msa0756210:CDS
ATCCCATTCCTCTTCTGTGT+TGG 0.473339 5_2:-10281088 None:intergenic
GTTGGTAATGTCTCCTAACA+TGG 0.479028 5_2:+10277400 Msa0756210:five_prime_UTR
TGAGGTATGATGGTTGTTTG+TGG 0.480322 5_2:+10281551 Msa0756210:three_prime_UTR
AACTAATGGTTCCAAAGGAT+TGG 0.481019 5_2:+10280035 Msa0756210:CDS
GCCTATCCTCCGCATCAGTT+CGG 0.483793 5_2:-10280356 None:intergenic
CTAACATGGTTTATCTTGGC+CGG 0.484256 5_2:+10277414 Msa0756210:five_prime_UTR
CCGTAGCCTCCTCAAGCCTC+TGG 0.484339 5_2:-10280378 None:intergenic
TTCCTCTTCTGTGTTGGTCG+TGG 0.488018 5_2:-10281082 None:intergenic
GTGGTGTCTAAATCCATTGT+TGG 0.491175 5_2:+10277202 Msa0756210:five_prime_UTR
ATGAATGTGTTTGTGTGTGT+TGG 0.492957 5_2:+10277363 Msa0756210:five_prime_UTR
ATGTACGAGACCATTGAAAA+GGG 0.494912 5_2:+10279755 Msa0756210:CDS
AAGACGTAAAAGTTCTGAAA+GGG 0.496037 5_2:+10281127 Msa0756210:CDS
AGCTTCTCCGACAACTGCCC+CGG 0.496223 5_2:-10280137 None:intergenic
CCTCATAGGCTCATCTTAAG+TGG 0.498922 5_2:-10281605 None:intergenic
AACCTTTAAATACATGTCAA+TGG 0.499724 5_2:-10280701 None:intergenic
CATAGCTACCAAGGCTTCGA+TGG 0.501566 5_2:+10279919 Msa0756210:CDS
GGGAACATTCTGAAATTGGT+TGG 0.502141 5_2:+10276461 Msa0756210:five_prime_UTR
TATGTTATGCAGGAACATCC+TGG 0.502662 5_2:+10280817 Msa0756210:intron
TGTATAATCGTCGATCACTT+TGG 0.503342 5_2:+10281471 Msa0756210:three_prime_UTR
GCTTCAACAACATCATCATC+AGG 0.503463 5_2:+10280982 Msa0756210:CDS
ATATGTGCAAAGTTCTGTTA+TGG 0.503531 5_2:+10279668 Msa0756210:CDS
GACTGTGGCTTGAGGTATGA+TGG 0.504805 5_2:+10281541 Msa0756210:three_prime_UTR
GTGAGAGGAAAAGAATATGT+AGG 0.505622 5_2:+10280851 Msa0756210:CDS
GACCAACACAGAAGAGGAAT+GGG 0.506254 5_2:+10281086 Msa0756210:CDS
TGAACTACCGTGAGAACCAC+CGG 0.506443 5_2:-10281052 None:intergenic
CGGTGTGAGGAAACAACTAA+TGG 0.506709 5_2:+10280021 Msa0756210:CDS
AATCTACGCCATCTAGAAGT+AGG 0.507067 5_2:+10281385 Msa0756210:CDS
ACCGGGATGCAATGCCCTGA+TGG 0.507424 5_2:-10281034 None:intergenic
TCCTGAAAATGCTGGAGTTG+AGG 0.508475 5_2:-10279805 None:intergenic
TGCCCCGGAAACATTTCCAT+TGG 0.509798 5_2:-10280122 None:intergenic
CTGTCAACTATTACAACCAA+TGG 0.510029 5_2:+10280106 Msa0756210:CDS
ACCTGTACAACGACACGTAA+AGG 0.510885 5_2:-10280937 None:intergenic
TATGACCACTCCACCTTGGA+TGG 0.511110 5_2:-10279944 None:intergenic
TCAAAAGCAACAGGTCCTCC+AGG 0.511400 5_2:-10279644 None:intergenic
CATCGAAGCCTTGGTAGCTA+TGG 0.511487 5_2:-10279918 None:intergenic
AATGTTTCCGGGGCAGTTGT+CGG 0.511899 5_2:+10280130 Msa0756210:CDS
TTTAATAGAGAGTGGGGCGG+TGG 0.512625 5_2:+10277266 Msa0756210:five_prime_UTR
CGACCAACACAGAAGAGGAA+TGG 0.512670 5_2:+10281085 Msa0756210:CDS
CAGGTATGTGGCAACTGAGC+TGG 0.513876 5_2:+10279315 Msa0756210:intron
CCCTGCTTCTACTGTTGTTG+AGG 0.513974 5_2:+10281356 Msa0756210:CDS
ATTGTTGCAATTTATTTGCA+GGG 0.515311 5_2:+10281898 Msa0756210:three_prime_UTR
GGTTAATGAGAAACAAAGAA+AGG 0.515408 5_2:+10276358 None:intergenic
TTTCCAGCTCCTGAAAATGC+TGG 0.516969 5_2:-10279813 None:intergenic
CAACCAAATCACTTCTTCCA+TGG 0.518084 5_2:+10279858 Msa0756210:CDS
GGATGGATCCATCGAAGCCT+TGG 0.518873 5_2:-10279927 None:intergenic
GTTAATGAGAAACAAAGAAA+GGG 0.524317 5_2:+10276359 None:intergenic
TCCATCAGGGCATTGCATCC+CGG 0.525817 5_2:+10281033 Msa0756210:CDS
TACACCTCTAGAAGGTTGCC+TGG 0.530328 5_2:+10280169 Msa0756210:CDS
ATCTTAAGTTCCTCCGACCA+TGG 0.530439 5_2:-10279875 None:intergenic
TGCAATGCCCTGATGGAACC+GGG 0.532513 5_2:-10281027 None:intergenic
AGGAAAGCTTGATACCAAAT+CGG 0.533858 5_2:-10280650 None:intergenic
TATGTAGGTTGATGGACTGC+AGG 0.536125 5_2:+10280866 Msa0756210:CDS
TAATGGTTCCAAAGGATTGG+TGG 0.538641 5_2:+10280038 Msa0756210:CDS
CCAGAGGCTTGAGGAGGCTA+CGG 0.540725 5_2:+10280378 Msa0756210:CDS
TTGCCGGTAGATATGGGAAG+TGG 0.543251 5_2:+10280265 Msa0756210:CDS
GTAGCTGCTAACAAAATGAA+AGG 0.551181 5_2:+10281246 Msa0756210:CDS
TTGCATCCCGGTGGTTCTCA+CGG 0.551268 5_2:+10281045 Msa0756210:CDS
TCCGAACTGATGCGGAGGAT+AGG 0.560564 5_2:+10280355 Msa0756210:CDS
GGGAAAGATTCGGTCATACA+AGG 0.565114 5_2:+10277567 Msa0756210:five_prime_UTR
ACTAACTAGAATCAAATGCT+AGG 0.566777 5_2:+10281757 Msa0756210:three_prime_UTR
TGCAAAGTTCTGTTATGGTA+TGG 0.567366 5_2:+10279673 Msa0756210:CDS
TCTTTGTGATATCACCACTC+TGG 0.567643 5_2:-10280210 None:intergenic
TGTTGTACTATAATCAGAGA+AGG 0.567780 5_2:+10281638 Msa0756210:three_prime_UTR
GAAACAACTAATGGTTCCAA+AGG 0.569885 5_2:+10280030 Msa0756210:CDS
AGTTGCAGCTCGCTGTGCAG+CGG 0.570192 5_2:+10279721 Msa0756210:CDS
TAAGTGCGTACACCTCTAGA+AGG 0.571808 5_2:+10280161 Msa0756210:CDS
AGACCGTCATGAGACTGTCT+AGG 0.573268 5_2:-10280670 None:intergenic
GTGGTGTCAGATAGAACTAG+TGG 0.574514 5_2:+10277285 Msa0756210:five_prime_UTR
GAAGACGTAAAAGTTCTGAA+AGG 0.575342 5_2:+10281126 Msa0756210:CDS
GTAACAAAGTCCAAAGAGAC+CGG 0.578877 5_2:-10277433 None:intergenic
AGATGAGCCTATGAGGGACC+CGG 0.580189 5_2:+10281612 Msa0756210:three_prime_UTR
GAGGATAGGCCAGAGGCTTG+AGG 0.582061 5_2:+10280369 Msa0756210:CDS
TGATCTTCCCGGTTCCATCA+GGG 0.583101 5_2:+10281020 Msa0756210:CDS
CACTTAAGATGAGCCTATGA+GGG 0.584475 5_2:+10281606 Msa0756210:three_prime_UTR
AATGGTTCCAAAGGATTGGT+GGG 0.585467 5_2:+10280039 Msa0756210:CDS
CAAAGGAATGGCAAAAGATG+AGG 0.585917 5_2:-10276555 None:intergenic
ACATGAACCAATCAAAGGAA+TGG 0.586672 5_2:-10276567 None:intergenic
TCTGACATAGTCGTTAATGT+TGG 0.590158 5_2:+10279340 Msa0756210:CDS
TGTGTTTGTGTAGCTAGCTG+TGG 0.593299 5_2:+10276489 Msa0756210:five_prime_UTR
GCTTTCGGACGTATCAGAGC+TGG 0.595171 5_2:-10281334 None:intergenic
GTTTGTGTAGCTAGCTGTGG+TGG 0.597001 5_2:+10276492 Msa0756210:five_prime_UTR
CTCGCTTATAGAGATCAAGT+TGG 0.598194 5_2:-10280081 None:intergenic
AAAATGGGAACGAAGCACAC+TGG 0.598218 5_2:+10279996 Msa0756210:CDS
GTTAGTTTCAAACACAGATG+AGG 0.598340 5_2:+10279592 Msa0756210:CDS
CAAATCACTTCTTCCATGGT+CGG 0.598798 5_2:+10279862 Msa0756210:CDS
TGGTGTCAGATAGAACTAGT+GGG 0.601505 5_2:+10277286 Msa0756210:five_prime_UTR
GAGCCACTTCCCATATCTAC+CGG 0.602916 5_2:-10280268 None:intergenic
CACAAACATAAACATAAACA+AGG 0.604209 5_2:-10276598 None:intergenic
AGCAACAACAATGACGGTGG+TGG 0.606571 5_2:+10281204 Msa0756210:CDS
AGAAGAGGAATGGGATGCTG+TGG 0.608026 5_2:+10281095 Msa0756210:CDS
GGCTTCGATGGATCCATCCA+AGG 0.608155 5_2:+10279931 Msa0756210:CDS
GAGGCTTGAGGAGGCTACGG+TGG 0.609045 5_2:+10280381 Msa0756210:CDS
AAACTACATGAACCAATCAA+AGG 0.610942 5_2:-10276572 None:intergenic
CGAATCTTTCCCACAAACCA+AGG 0.613263 5_2:-10277556 None:intergenic
GGAGATCAGAAGCCCCAAGA+TGG 0.614219 5_2:+10280522 Msa0756210:CDS
AGGAGTTCAAAGAAGGGACA+TGG 0.614723 5_2:+10277088 Msa0756210:intron
TGACATAGTCGTTAATGTTG+GGG 0.615279 5_2:+10279342 Msa0756210:CDS
AAGTATTTGATACCATCTTG+GGG 0.615466 5_2:-10280534 None:intergenic
CGGTGAGATCCGAACTGATG+CGG 0.621378 5_2:+10280347 Msa0756210:CDS
GCCGCACTAAAACTATCAAG+TGG 0.621390 5_2:+10281156 Msa0756210:CDS
AAGCACACTGGAACGGTGTG+AGG 0.624811 5_2:+10280008 Msa0756210:CDS
CTGAGACTGACTGTGGCTTG+AGG 0.625186 5_2:+10281533 Msa0756210:three_prime_UTR
AAACCAATACAAACTACACT+AGG 0.625511 5_2:-10281788 None:intergenic
CAGGTCCTCCAGGAATGTCG+TGG 0.625588 5_2:-10279634 None:intergenic
GATTATAGTACAACAAAACC+GGG 0.627016 5_2:-10281630 None:intergenic
TGGATCCATCCAAGGTGGAG+TGG 0.627703 5_2:+10279939 Msa0756210:CDS
TGTGTATGACCACTCCACCT+TGG 0.631504 5_2:-10279948 None:intergenic
CTGGAATCAGCAAAAGTGAG+AGG 0.633326 5_2:+10280836 Msa0756210:CDS
TACCACGACCAACACAGAAG+AGG 0.634888 5_2:+10281080 Msa0756210:CDS
ACACGAGCATCAATCTTCGA+TGG 0.639556 5_2:+10280486 Msa0756210:CDS
ATGTTCACAAAACTGAGAAG+AGG 0.639567 5_2:-10280625 None:intergenic
GGGAACGAAGCACACTGGAA+CGG 0.640951 5_2:+10280001 Msa0756210:CDS
AGAAACAGCAACAACAATGA+CGG 0.642249 5_2:+10281198 Msa0756210:CDS
AATAAGGGTGTTATCCAGAG+TGG 0.642711 5_2:+10280196 Msa0756210:CDS
TATCGAGTCCATAGCTACCA+AGG 0.646357 5_2:+10279910 Msa0756210:CDS
TAGCTATGGACTCGATACAA+TGG 0.647840 5_2:-10279904 None:intergenic
ATCACTTCTTCCATGGTCGG+AGG 0.648232 5_2:+10279865 Msa0756210:CDS
GGTGTCAGATAGAACTAGTG+GGG 0.648820 5_2:+10277287 Msa0756210:five_prime_UTR
TTGATATCAAAGAAACACAA+AGG 0.650391 5_2:-10276670 None:intergenic
GAAACCAGGCAACCTTCTAG+AGG 0.650655 5_2:-10280173 None:intergenic
GATATGGGAAGTGGCTCATG+CGG 0.650973 5_2:+10280274 Msa0756210:CDS
AGACGTAAAAGTTCTGAAAG+GGG 0.651354 5_2:+10281128 Msa0756210:CDS
TCAACTGGATTGTGAAGTGT+CGG 0.651439 5_2:+10280327 Msa0756210:CDS
CCTCAACAACAGTAGAAGCA+GGG 0.658156 5_2:-10281356 None:intergenic
GAACTACCGTGAGAACCACC+GGG 0.662467 5_2:-10281051 None:intergenic
GATAGGCCAGAGGCTTGAGG+AGG 0.663205 5_2:+10280372 Msa0756210:CDS
ATCAGGGCATTGCATCCCGG+TGG 0.664334 5_2:+10281036 Msa0756210:CDS
TGAGATCCGAACTGATGCGG+AGG 0.666675 5_2:+10280350 Msa0756210:CDS
ATAACACCCTTATTGAAACC+AGG 0.668210 5_2:-10280187 None:intergenic
AACCAATGGAAATGTTTCCG+GGG 0.669317 5_2:+10280120 Msa0756210:CDS
GGTTCCAAAGGATTGGTGGG+TGG 0.674076 5_2:+10280042 Msa0756210:CDS
CATAAGTTGAGAGAGAAAGT+GGG 0.674517 5_2:+10276441 Msa0756210:five_prime_UTR
CGCTTAACCTAACAAAACAG+TGG 0.676154 5_2:-10281831 None:intergenic
TTTCCTAGACAGTCTCATGA+CGG 0.681338 5_2:+10280667 Msa0756210:CDS
TGCATGCAGTGCAGAATGAG+CGG 0.681971 5_2:+10280911 Msa0756210:CDS
ACGATTATACAACGATGCAA+CGG 0.685114 5_2:-10281459 None:intergenic
CTTCTAGCTGAGACTGACTG+TGG 0.687790 5_2:+10281526 Msa0756210:three_prime_UTR
GCACTAAAACTATCAAGTGG+AGG 0.693236 5_2:+10281159 Msa0756210:CDS
GATCACGTGCAATCTCAGCA+AGG 0.693796 5_2:-10280594 None:intergenic
TGATGCGGAGGATAGGCCAG+AGG 0.699869 5_2:+10280362 Msa0756210:CDS
AACAGCAACAACAATGACGG+TGG 0.701652 5_2:+10281201 Msa0756210:CDS
GTGGCTGTCATCAAAAGATG+AGG 0.704835 5_2:+10276511 Msa0756210:five_prime_UTR
TCAACAACATCATCATCAGG+AGG 0.705468 5_2:+10280985 Msa0756210:CDS
CACATCCACGACATTCCTGG+AGG 0.714031 5_2:+10279629 Msa0756210:CDS
GTGTCAGATAGAACTAGTGG+GGG 0.721905 5_2:+10277288 Msa0756210:five_prime_UTR
TTCGATGGATCCATCCAAGG+TGG 0.725031 5_2:+10279934 Msa0756210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTACAAAATAAAGTTTAA+CGG + chr5_2:10278223-10278242 Msa0756210:intron 10.0%
!! ACATATTAAATACAAAATTA+AGG - chr5_2:10279167-10279186 None:intergenic 10.0%
!!! AAAATTTAAAATAAGAGGAT+CGG - chr5_2:10278824-10278843 None:intergenic 15.0%
!! TATTAAATACAAAATTAAGG+CGG - chr5_2:10279164-10279183 None:intergenic 15.0%
!!! TGATATTTTATGTTTTCTTT+TGG + chr5_2:10279246-10279265 Msa0756210:intron 15.0%
!! TTGTATACAATAATTACAAA+AGG - chr5_2:10279437-10279456 None:intergenic 15.0%
!! TGAAACATAAAAATCAACAT+GGG - chr5_2:10276816-10276835 None:intergenic 20.0%
!! ATGAAACATAAAAATCAACA+TGG - chr5_2:10276817-10276836 None:intergenic 20.0%
!!! AGCATTTTTTTTTAATCCAA+TGG + chr5_2:10276955-10276974 Msa0756210:intron 20.0%
!!! AAAATTATGTTTCTGAATCT+TGG - chr5_2:10277249-10277268 None:intergenic 20.0%
!!! AACATAATTTTAATAGAGAG+TGG + chr5_2:10277258-10277277 Msa0756210:five_prime_UTR 20.0%
!!! ACATAATTTTAATAGAGAGT+GGG + chr5_2:10277259-10277278 Msa0756210:five_prime_UTR 20.0%
!!! TTTGAATCATATGTTATTTC+AGG + chr5_2:10277821-10277840 Msa0756210:intron 20.0%
!!! TTAGTATTATTTTGTCATGA+TGG + chr5_2:10277945-10277964 Msa0756210:intron 20.0%
!!! TTAAGTTGTTTATTGAAACA+GGG - chr5_2:10278155-10278174 None:intergenic 20.0%
!!! ATTAAGTTGTTTATTGAAAC+AGG - chr5_2:10278156-10278175 None:intergenic 20.0%
!! TTATACATAAGCACTTATAT+TGG - chr5_2:10278188-10278207 None:intergenic 20.0%
!! TCAAATAATCAAATCTAAAC+AGG + chr5_2:10278354-10278373 Msa0756210:intron 20.0%
!! ATCTATAGTGAAAAAATTCT+TGG - chr5_2:10278745-10278764 None:intergenic 20.0%
!!! GTGTGAAAATTTAAAATAAG+AGG - chr5_2:10278829-10278848 None:intergenic 20.0%
!!! ATTTCATTCACTGTTTTTTA+CGG + chr5_2:10278943-10278962 Msa0756210:intron 20.0%
!! ATTAAATACAAAATTAAGGC+GGG - chr5_2:10279163-10279182 None:intergenic 20.0%
!!! CGTAAAATTTTATCTACATA+AGG + chr5_2:10279366-10279385 Msa0756210:CDS 20.0%
!! CACAAAGAATAGATTATTAT+TGG + chr5_2:10280225-10280244 Msa0756210:CDS 20.0%
!! AAACATGTTAAATACATGTA+TGG - chr5_2:10280738-10280757 None:intergenic 20.0%
! CACAAACATAAACATAAACA+AGG - chr5_2:10276601-10276620 None:intergenic 25.0%
! TTGATATCAAAGAAACACAA+AGG - chr5_2:10276673-10276692 None:intergenic 25.0%
!! AAACAATATCTGTGTTTTCT+AGG + chr5_2:10276704-10276723 Msa0756210:five_prime_UTR 25.0%
! ATGCTTTATGTCTACAAAAT+AGG + chr5_2:10277022-10277041 Msa0756210:intron 25.0%
!!! AAACAAAAGACAGCATTTTT+TGG - chr5_2:10277066-10277085 None:intergenic 25.0%
!!! CATAATTTTAATAGAGAGTG+GGG + chr5_2:10277260-10277279 Msa0756210:five_prime_UTR 25.0%
! AGATCAAAGTAGAAGATAAA+AGG - chr5_2:10277611-10277630 None:intergenic 25.0%
!! TTTTCTGTTTTATCCAAACT+TGG + chr5_2:10277650-10277669 Msa0756210:five_prime_UTR 25.0%
!!! TTTTGGAGCTTTTTTCTTTT+TGG + chr5_2:10277708-10277727 Msa0756210:five_prime_UTR 25.0%
! AAGATGAAGTTTATGAAACT+TGG + chr5_2:10277733-10277752 Msa0756210:exon 25.0%
!! AAAATGATGGAGATAATGTT+AGG + chr5_2:10277776-10277795 Msa0756210:CDS 25.0%
! TATATGTTGAGGAACTAATT+AGG - chr5_2:10278036-10278055 None:intergenic 25.0%
! TAGCATTATCATATATGTTG+AGG - chr5_2:10278047-10278066 None:intergenic 25.0%
! GGAAATAAGAAAACAACTTA+TGG + chr5_2:10278303-10278322 Msa0756210:intron 25.0%
! AAGAAGATATATCTGAACTA+TGG - chr5_2:10278451-10278470 None:intergenic 25.0%
! GATAAATCTGAAAAGAAAGA+TGG - chr5_2:10278702-10278721 None:intergenic 25.0%
!! GGAAAGGAAAATTATTTTCA+AGG - chr5_2:10278724-10278743 None:intergenic 25.0%
! TAGTGAAAAAATTCTTGGAA+AGG - chr5_2:10278740-10278759 None:intergenic 25.0%
! ATTGTTCGTAAATATGCAAA+AGG - chr5_2:10279056-10279075 None:intergenic 25.0%
! CATTCAAAATTAATGTGAAG+TGG + chr5_2:10279280-10279299 Msa0756210:intron 25.0%
!! ATTACAAAAGGTGTATTCTT+TGG - chr5_2:10279425-10279444 None:intergenic 25.0%
! TTATTATTGGAGACTATTGT+CGG + chr5_2:10280238-10280257 Msa0756210:CDS 25.0%
! AACCTTTAAATACATGTCAA+TGG - chr5_2:10280704-10280723 None:intergenic 25.0%
! TGATTATAGTACAACAAAAC+CGG - chr5_2:10281634-10281653 None:intergenic 25.0%
!!! TAACTAATTTTGACCTATGA+TGG + chr5_2:10281861-10281880 Msa0756210:three_prime_UTR 25.0%
!!! TCTATTTTTACAACCATCAT+AGG - chr5_2:10281877-10281896 None:intergenic 25.0%
! ATTGTTGCAATTTATTTGCA+GGG + chr5_2:10281898-10281917 Msa0756210:three_prime_UTR 25.0%
! CTGTTTAAGAACTAGTTATT+AGG + chr5_2:10281949-10281968 Msa0756210:three_prime_UTR 25.0%
AAAGGGAAAAAGGAAAAGTT+AGG + chr5_2:10276376-10276395 Msa0756210:five_prime_UTR 30.0%
AAGGGAAAAAGGAAAAGTTA+GGG + chr5_2:10276377-10276396 Msa0756210:five_prime_UTR 30.0%
AAACTACATGAACCAATCAA+AGG - chr5_2:10276575-10276594 None:intergenic 30.0%
AAGAAACACAAAGGTTTAGT+TGG - chr5_2:10276664-10276683 None:intergenic 30.0%
!! CAGATATTGTTTCAGGTTTA+TGG - chr5_2:10276696-10276715 None:intergenic 30.0%
GAAAACACAGATATTGTTTC+AGG - chr5_2:10276703-10276722 None:intergenic 30.0%
! TCACAAGTTGGAATAATGAT+GGG - chr5_2:10276863-10276882 None:intergenic 30.0%
!!! ACATAAAGCATCGTTTTTTG+TGG - chr5_2:10277013-10277032 None:intergenic 30.0%
CTTTATGTCTACAAAATAGG+TGG + chr5_2:10277025-10277044 Msa0756210:intron 30.0%
!!! AAATGCTGTCTTTTGTTTTC+AGG + chr5_2:10277068-10277087 Msa0756210:intron 30.0%
TGAATGTTGAGTATGGAATT+TGG + chr5_2:10277127-10277146 Msa0756210:five_prime_UTR 30.0%
!!! GTGTTTTGTTTGTTACTTTG+TGG + chr5_2:10277183-10277202 Msa0756210:five_prime_UTR 30.0%
!! TTTGTTGTTGTTTCCAACAA+TGG - chr5_2:10277218-10277237 None:intergenic 30.0%
!!! TTGGAGATAGTTTGTTTTGT+TGG + chr5_2:10277382-10277401 Msa0756210:five_prime_UTR 30.0%
! GAACATGTTGCTTACTAAAA+TGG - chr5_2:10277458-10277477 None:intergenic 30.0%
! AAATTTCATCTAACTAGCCT+TGG + chr5_2:10277539-10277558 Msa0756210:five_prime_UTR 30.0%
! GGTGATTTGAAAAGCTATTT+TGG + chr5_2:10277691-10277710 Msa0756210:five_prime_UTR 30.0%
!! CCATCATTTTGAAAAGAATC+AGG - chr5_2:10277766-10277785 None:intergenic 30.0%
! CCTGATTCTTTTCAAAATGA+TGG + chr5_2:10277763-10277782 Msa0756210:CDS 30.0%
AACATATGATTCAAAGCAAG+AGG - chr5_2:10277816-10277835 None:intergenic 30.0%
AAACATAAGAAACCAACCAA+TGG - chr5_2:10277887-10277906 None:intergenic 30.0%
ACATAAGCACTTATATTGGA+AGG - chr5_2:10278184-10278203 None:intergenic 30.0%
ATTACGTAATCCTCAATTTG+AGG - chr5_2:10278381-10278400 None:intergenic 30.0%
TATCCTTGACTGATAAAGAA+TGG - chr5_2:10278416-10278435 None:intergenic 30.0%
TATATCTGAACTATGGAGAT+GGG - chr5_2:10278444-10278463 None:intergenic 30.0%
ATATATCTGAACTATGGAGA+TGG - chr5_2:10278445-10278464 None:intergenic 30.0%
GTGAGATAGAAATGTATCAT+TGG - chr5_2:10278481-10278500 None:intergenic 30.0%
! TGTTAACTTTTGCTTCTTTC+TGG - chr5_2:10278555-10278574 None:intergenic 30.0%
! TTTAAATTTTCACACGACAG+TGG + chr5_2:10278834-10278853 Msa0756210:intron 30.0%
GTATGCTTTCATGTAAGATT+TGG + chr5_2:10278858-10278877 Msa0756210:intron 30.0%
TAGTACATAACACACATTGA+TGG - chr5_2:10278915-10278934 None:intergenic 30.0%
! ACAAGCAATAGTATGTTTTC+TGG - chr5_2:10279195-10279214 None:intergenic 30.0%
CATATATTTGTTCAGGTATG+TGG + chr5_2:10279303-10279322 Msa0756210:intron 30.0%
ATGTGGTTTGATTATCCTTT+AGG + chr5_2:10279495-10279514 Msa0756210:intron 30.0%
ATATGTGCAAAGTTCTGTTA+TGG + chr5_2:10279668-10279687 Msa0756210:CDS 30.0%
AAGTATTTGATACCATCTTG+GGG - chr5_2:10280537-10280556 None:intergenic 30.0%
! GAAGTATTTGATACCATCTT+GGG - chr5_2:10280538-10280557 None:intergenic 30.0%
AAATACTTCGAGCAAGATAA+AGG + chr5_2:10280549-10280568 Msa0756210:CDS 30.0%
TGCCATTGACATGTATTTAA+AGG + chr5_2:10280699-10280718 Msa0756210:CDS 30.0%
CATGTTAAATACATGTATGG+TGG - chr5_2:10280735-10280754 None:intergenic 30.0%
! GAAAAGAATATGTAGGTTGA+TGG + chr5_2:10280858-10280877 Msa0756210:CDS 30.0%
!! AAGACGTAAAAGTTCTGAAA+GGG + chr5_2:10281127-10281146 Msa0756210:CDS 30.0%
AGAATAACTTCTTGGACATA+AGG - chr5_2:10281275-10281294 None:intergenic 30.0%
AAGCTTAGAGAATAACTTCT+TGG - chr5_2:10281283-10281302 None:intergenic 30.0%
AGAAGTTATTCTCTAAGCTT+TGG + chr5_2:10281283-10281302 Msa0756210:CDS 30.0%
GATTATAGTACAACAAAACC+GGG - chr5_2:10281633-10281652 None:intergenic 30.0%
TGTTGTACTATAATCAGAGA+AGG + chr5_2:10281638-10281657 Msa0756210:three_prime_UTR 30.0%
ACTAACTAGAATCAAATGCT+AGG + chr5_2:10281757-10281776 Msa0756210:three_prime_UTR 30.0%
AAACCAATACAAACTACACT+AGG - chr5_2:10281791-10281810 None:intergenic 30.0%
CATTGTTGCAATTTATTTGC+AGG + chr5_2:10281897-10281916 Msa0756210:three_prime_UTR 30.0%
AGGGAAAAAGGAAAAGTTAG+GGG + chr5_2:10276378-10276397 Msa0756210:five_prime_UTR 35.0%
! CATAAGTTGAGAGAGAAAGT+GGG + chr5_2:10276441-10276460 Msa0756210:five_prime_UTR 35.0%
!! AAGTGGGAACATTCTGAAAT+TGG + chr5_2:10276457-10276476 Msa0756210:five_prime_UTR 35.0%
CAAAAGATGAGGCTTGAAAA+AGG - chr5_2:10276547-10276566 None:intergenic 35.0%
! TCTTTTGCCATTCCTTTGAT+TGG + chr5_2:10276560-10276579 Msa0756210:five_prime_UTR 35.0%
ACATGAACCAATCAAAGGAA+TGG - chr5_2:10276570-10276589 None:intergenic 35.0%
CGAGTATGAGAAAAAAGAAG+AGG - chr5_2:10276640-10276659 None:intergenic 35.0%
! GTCACAAGTTGGAATAATGA+TGG - chr5_2:10276864-10276883 None:intergenic 35.0%
TATTCCAACTTGTGACCAAT+TGG + chr5_2:10276868-10276887 Msa0756210:intron 35.0%
ATTCCAACTTGTGACCAATT+GGG + chr5_2:10276869-10276888 Msa0756210:intron 35.0%
!! TGTTTTCAGGAGTTCAAAGA+AGG + chr5_2:10277081-10277100 Msa0756210:intron 35.0%
!! GTTTTCAGGAGTTCAAAGAA+GGG + chr5_2:10277082-10277101 Msa0756210:intron 35.0%
TAGTGTGTGAATGTTGAGTA+TGG + chr5_2:10277120-10277139 Msa0756210:five_prime_UTR 35.0%
!! AATTTTAATAGAGAGTGGGG+CGG + chr5_2:10277263-10277282 Msa0756210:five_prime_UTR 35.0%
ATGAATGTGTTTGTGTGTGT+TGG + chr5_2:10277363-10277382 Msa0756210:five_prime_UTR 35.0%
TCTCCTAACATGGTTTATCT+TGG + chr5_2:10277410-10277429 Msa0756210:five_prime_UTR 35.0%
CACAAACTCTTAACCAAGTT+TGG - chr5_2:10277666-10277685 None:intergenic 35.0%
CAAACTTGGTTAAGAGTTTG+TGG + chr5_2:10277664-10277683 Msa0756210:five_prime_UTR 35.0%
TGATTTCCTTCCAAATCCAT+TGG + chr5_2:10277868-10277887 Msa0756210:intron 35.0%
! AAGAAACCAACCAATGGATT+TGG - chr5_2:10277881-10277900 None:intergenic 35.0%
GTTCCATTCTTTATCAGTCA+AGG + chr5_2:10278410-10278429 Msa0756210:intron 35.0%
!! AACTTTTGCTTCTTTCTGGT+TGG - chr5_2:10278551-10278570 None:intergenic 35.0%
GCAAAAGTTAACATTGTCAC+AGG + chr5_2:10278562-10278581 Msa0756210:intron 35.0%
AAGAAAGATGGAACACTATG+TGG - chr5_2:10278690-10278709 None:intergenic 35.0%
TCCAAAATCAAACTAGTTGG+TGG + chr5_2:10278967-10278986 Msa0756210:intron 35.0%
!! ACCACCAACTAGTTTGATTT+TGG - chr5_2:10278971-10278990 None:intergenic 35.0%
CACAAAACCAAATATGGCTA+TGG - chr5_2:10279026-10279045 None:intergenic 35.0%
CAAATATGCGTTTCAGCAAT+TGG + chr5_2:10279109-10279128 Msa0756210:intron 35.0%
ATTGCTTGTCATACTGTAGT+AGG + chr5_2:10279206-10279225 Msa0756210:intron 35.0%
GAAGTGGCATATATTTGTTC+AGG + chr5_2:10279296-10279315 Msa0756210:intron 35.0%
TCTGACATAGTCGTTAATGT+TGG + chr5_2:10279340-10279359 Msa0756210:CDS 35.0%
CTGACATAGTCGTTAATGTT+GGG + chr5_2:10279341-10279360 Msa0756210:CDS 35.0%
TGACATAGTCGTTAATGTTG+GGG + chr5_2:10279342-10279361 Msa0756210:CDS 35.0%
AGCAGATATTGATCAGGTAA+AGG - chr5_2:10279533-10279552 None:intergenic 35.0%
! CGTAAACTTTTGGACAAAAG+TGG - chr5_2:10279563-10279582 None:intergenic 35.0%
! CTTTTGCAAGCGTAAACTTT+TGG - chr5_2:10279573-10279592 None:intergenic 35.0%
! GTTAGTTTCAAACACAGATG+AGG + chr5_2:10279592-10279611 Msa0756210:CDS 35.0%
GCACATATTTCAAAAGCAAC+AGG - chr5_2:10279656-10279675 None:intergenic 35.0%
TGCAAAGTTCTGTTATGGTA+TGG + chr5_2:10279673-10279692 Msa0756210:CDS 35.0%
ATGTACGAGACCATTGAAAA+GGG + chr5_2:10279755-10279774 Msa0756210:CDS 35.0%
! GATGAGATTTCCCTTTTCAA+TGG - chr5_2:10279768-10279787 None:intergenic 35.0%
AGTGGTCATACACATATAAC+AGG + chr5_2:10279957-10279976 Msa0756210:CDS 35.0%
GAAACAACTAATGGTTCCAA+AGG + chr5_2:10280030-10280049 Msa0756210:CDS 35.0%
AACTAATGGTTCCAAAGGAT+TGG + chr5_2:10280035-10280054 Msa0756210:CDS 35.0%
! CATTGGTTGTAATAGTTGAC+AGG - chr5_2:10280108-10280127 None:intergenic 35.0%
CTGTCAACTATTACAACCAA+TGG + chr5_2:10280106-10280125 Msa0756210:CDS 35.0%
ACAACCAATGGAAATGTTTC+CGG + chr5_2:10280118-10280137 Msa0756210:CDS 35.0%
ATAACACCCTTATTGAAACC+AGG - chr5_2:10280190-10280209 None:intergenic 35.0%
ATTGAAAGTGGCTATTCAAC+TGG + chr5_2:10280312-10280331 Msa0756210:CDS 35.0%
! CGAAGTATTTGATACCATCT+TGG - chr5_2:10280539-10280558 None:intergenic 35.0%
ATGTTCACAAAACTGAGAAG+AGG - chr5_2:10280628-10280647 None:intergenic 35.0%
AGGAAAGCTTGATACCAAAT+CGG - chr5_2:10280653-10280672 None:intergenic 35.0%
ACTTCAACCGAACTGAATTT+CGG + chr5_2:10280781-10280800 Msa0756210:intron 35.0%
CTCACACTATTATGTTATGC+AGG + chr5_2:10280807-10280826 Msa0756210:intron 35.0%
GTGAGAGGAAAAGAATATGT+AGG + chr5_2:10280851-10280870 Msa0756210:CDS 35.0%
!! GAAGACGTAAAAGTTCTGAA+AGG + chr5_2:10281126-10281145 Msa0756210:CDS 35.0%
!! AGACGTAAAAGTTCTGAAAG+GGG + chr5_2:10281128-10281147 Msa0756210:CDS 35.0%
!!! TCCACTTGATAGTTTTAGTG+CGG - chr5_2:10281160-10281179 None:intergenic 35.0%
AGAAACAGCAACAACAATGA+CGG + chr5_2:10281198-10281217 Msa0756210:CDS 35.0%
GTAGCTGCTAACAAAATGAA+AGG + chr5_2:10281246-10281265 Msa0756210:CDS 35.0%
TGGTCGAGCAAAGAAAAAAA+CGG + chr5_2:10281303-10281322 Msa0756210:CDS 35.0%
ACGATTATACAACGATGCAA+CGG - chr5_2:10281462-10281481 None:intergenic 35.0%
TGTATAATCGTCGATCACTT+TGG + chr5_2:10281471-10281490 Msa0756210:three_prime_UTR 35.0%
! TTGCCTAGTGTAGTTTGTAT+TGG + chr5_2:10281785-10281804 Msa0756210:three_prime_UTR 35.0%
!! TTGTACACCACTGTTTTGTT+AGG + chr5_2:10281824-10281843 Msa0756210:three_prime_UTR 35.0%
GGGAAAAAGGAAAAGTTAGG+GGG + chr5_2:10276379-10276398 Msa0756210:five_prime_UTR 40.0%
AAAAAGGAAAAGTTAGGGGG+TGG + chr5_2:10276382-10276401 Msa0756210:five_prime_UTR 40.0%
CCACTTTCTCTCTCAACTTA+TGG - chr5_2:10276443-10276462 None:intergenic 40.0%
! CCATAAGTTGAGAGAGAAAG+TGG + chr5_2:10276440-10276459 Msa0756210:five_prime_UTR 40.0%
!! GGGAACATTCTGAAATTGGT+TGG + chr5_2:10276461-10276480 Msa0756210:five_prime_UTR 40.0%
CAAAGGAATGGCAAAAGATG+AGG - chr5_2:10276558-10276577 None:intergenic 40.0%
TGCATTGAAACCAACCCAAT+TGG - chr5_2:10276886-10276905 None:intergenic 40.0%
GACACGTTATACACTACCAT+TGG - chr5_2:10276974-10276993 None:intergenic 40.0%
CAAAACACACACACACTTTC+TGG - chr5_2:10277171-10277190 None:intergenic 40.0%
GTGGTGTCTAAATCCATTGT+TGG + chr5_2:10277202-10277221 Msa0756210:five_prime_UTR 40.0%
! TGGTGTCAGATAGAACTAGT+GGG + chr5_2:10277286-10277305 Msa0756210:five_prime_UTR 40.0%
!! GTTGGTAATGTCTCCTAACA+TGG + chr5_2:10277400-10277419 Msa0756210:five_prime_UTR 40.0%
CTAACATGGTTTATCTTGGC+CGG + chr5_2:10277414-10277433 Msa0756210:five_prime_UTR 40.0%
GTAACAAAGTCCAAAGAGAC+CGG - chr5_2:10277436-10277455 None:intergenic 40.0%
!! ATCTAACTAGCCTTGGTTTG+TGG + chr5_2:10277546-10277565 Msa0756210:five_prime_UTR 40.0%
!! TCTAACTAGCCTTGGTTTGT+GGG + chr5_2:10277547-10277566 Msa0756210:five_prime_UTR 40.0%
!! CTTGGTTTGTGGGAAAGATT+CGG + chr5_2:10277557-10277576 Msa0756210:five_prime_UTR 40.0%
TGGTTAAGAGTTTGTGGAGT+AGG + chr5_2:10277670-10277689 Msa0756210:five_prime_UTR 40.0%
TTCCTTCCAAATCCATTGGT+TGG + chr5_2:10277872-10277891 Msa0756210:intron 40.0%
! AACCAACCAATGGATTTGGA+AGG - chr5_2:10277877-10277896 None:intergenic 40.0%
ACTGCTTTCATAAGCAATCC+TGG + chr5_2:10278271-10278290 Msa0756210:intron 40.0%
CTAAACAGGTCCTCAAATTG+AGG + chr5_2:10278368-10278387 Msa0756210:intron 40.0%
TGTTGGAGTTAAGGGAGAAT+AGG - chr5_2:10278506-10278525 None:intergenic 40.0%
GAAGCTCTTGTTGGAGTTAA+GGG - chr5_2:10278514-10278533 None:intergenic 40.0%
AGTTGCATCTCTGACAAGTT+CGG + chr5_2:10278589-10278608 Msa0756210:intron 40.0%
TGTAGATGCTGAGTTACAGT+TGG + chr5_2:10278656-10278675 Msa0756210:intron 40.0%
GGCTCCAAAATCAAACTAGT+TGG + chr5_2:10278964-10278983 Msa0756210:intron 40.0%
!! ACACTCTGAAGTTTGGTTCA+GGG - chr5_2:10279001-10279020 None:intergenic 40.0%
!! TATGGTCACACTCTGAAGTT+TGG - chr5_2:10279008-10279027 None:intergenic 40.0%
AGTGTGACCATAGCCATATT+TGG + chr5_2:10279016-10279035 Msa0756210:intron 40.0%
GCAGGACACAAAACCAAATA+TGG - chr5_2:10279032-10279051 None:intergenic 40.0%
! CGTAAATATGCAAAAGGTGC+AGG - chr5_2:10279050-10279069 None:intergenic 40.0%
GCTCGCTACATAAGTTTATG+TGG + chr5_2:10279478-10279497 Msa0756210:intron 40.0%
AGGTTCAATAAGCAGCCTAA+AGG - chr5_2:10279513-10279532 None:intergenic 40.0%
AACTGCAGCAGATATTGATC+AGG - chr5_2:10279539-10279558 None:intergenic 40.0%
GATGTACGAGACCATTGAAA+AGG + chr5_2:10279754-10279773 Msa0756210:CDS 40.0%
CAACCAAATCACTTCTTCCA+TGG + chr5_2:10279858-10279877 Msa0756210:CDS 40.0%
CAAATCACTTCTTCCATGGT+CGG + chr5_2:10279862-10279881 Msa0756210:CDS 40.0%
TAGCTATGGACTCGATACAA+TGG - chr5_2:10279907-10279926 None:intergenic 40.0%
TAACAGGAAAAAGCTCCCAT+CGG + chr5_2:10279973-10279992 Msa0756210:CDS 40.0%
AAAAAGCTCCCATCGGAAAA+TGG + chr5_2:10279980-10279999 Msa0756210:CDS 40.0%
AAAAGCTCCCATCGGAAAAT+GGG + chr5_2:10279981-10280000 Msa0756210:CDS 40.0%
TAATGGTTCCAAAGGATTGG+TGG + chr5_2:10280038-10280057 Msa0756210:CDS 40.0%
! AATGGTTCCAAAGGATTGGT+GGG + chr5_2:10280039-10280058 Msa0756210:CDS 40.0%
CTCGCTTATAGAGATCAAGT+TGG - chr5_2:10280084-10280103 None:intergenic 40.0%
CAACCAATGGAAATGTTTCC+GGG + chr5_2:10280119-10280138 Msa0756210:CDS 40.0%
AACCAATGGAAATGTTTCCG+GGG + chr5_2:10280120-10280139 Msa0756210:CDS 40.0%
AAGGTTGCCTGGTTTCAATA+AGG + chr5_2:10280180-10280199 Msa0756210:CDS 40.0%
AGGTTGCCTGGTTTCAATAA+GGG + chr5_2:10280181-10280200 Msa0756210:CDS 40.0%
!! AATAAGGGTGTTATCCAGAG+TGG + chr5_2:10280196-10280215 Msa0756210:CDS 40.0%
TCTTTGTGATATCACCACTC+TGG - chr5_2:10280213-10280232 None:intergenic 40.0%
!! GACTATTGTCGGTTTATTGC+CGG + chr5_2:10280249-10280268 Msa0756210:CDS 40.0%
GGTTTATTGCCGGTAGATAT+GGG + chr5_2:10280259-10280278 Msa0756210:CDS 40.0%
CTCGCTGAAGTTATTGAAAG+TGG + chr5_2:10280300-10280319 Msa0756210:CDS 40.0%
TCAACTGGATTGTGAAGTGT+CGG + chr5_2:10280327-10280346 Msa0756210:CDS 40.0%
AAACTGAGAAGAGGCAGATT+AGG - chr5_2:10280619-10280638 None:intergenic 40.0%
!! TTTTGTGAACATCGCCGATT+TGG + chr5_2:10280636-10280655 Msa0756210:CDS 40.0%
TTTCCTAGACAGTCTCATGA+CGG + chr5_2:10280667-10280686 Msa0756210:CDS 40.0%
TTCAGTTCGGTTGAAGTCAT+TGG - chr5_2:10280778-10280797 None:intergenic 40.0%
TGAGTCTCCGAAATTCAGTT+CGG - chr5_2:10280791-10280810 None:intergenic 40.0%
TATGTTATGCAGGAACATCC+TGG + chr5_2:10280817-10280836 Msa0756210:intron 40.0%
GCTTCAACAACATCATCATC+AGG + chr5_2:10280982-10281001 Msa0756210:CDS 40.0%
TCAACAACATCATCATCAGG+AGG + chr5_2:10280985-10281004 Msa0756210:CDS 40.0%
GCACTAAAACTATCAAGTGG+AGG + chr5_2:10281159-10281178 Msa0756210:CDS 40.0%
AATCTACGCCATCTAGAAGT+AGG + chr5_2:10281385-10281404 Msa0756210:CDS 40.0%
GAATGTCTCCTACTTCTAGA+TGG - chr5_2:10281396-10281415 None:intergenic 40.0%
! TCGATCACTTTGGTAGCATT+AGG + chr5_2:10281481-10281500 Msa0756210:three_prime_UTR 40.0%
TGAGGTATGATGGTTGTTTG+TGG + chr5_2:10281551-10281570 Msa0756210:three_prime_UTR 40.0%
CACTTAAGATGAGCCTATGA+GGG + chr5_2:10281606-10281625 Msa0756210:three_prime_UTR 40.0%
CGCTTAACCTAACAAAACAG+TGG - chr5_2:10281834-10281853 None:intergenic 40.0%
TGTGTTTGTGTAGCTAGCTG+TGG + chr5_2:10276489-10276508 Msa0756210:five_prime_UTR 45.0%
GTGGCTGTCATCAAAAGATG+AGG + chr5_2:10276511-10276530 Msa0756210:five_prime_UTR 45.0%
CAACCCAATTGGTCACAAGT+TGG - chr5_2:10276875-10276894 None:intergenic 45.0%
CAACTTGTGACCAATTGGGT+TGG + chr5_2:10276873-10276892 Msa0756210:intron 45.0%
AGGAGTTCAAAGAAGGGACA+TGG + chr5_2:10277088-10277107 Msa0756210:intron 45.0%
! GTGGTGTCAGATAGAACTAG+TGG + chr5_2:10277285-10277304 Msa0756210:five_prime_UTR 45.0%
GGTGTCAGATAGAACTAGTG+GGG + chr5_2:10277287-10277306 Msa0756210:five_prime_UTR 45.0%
GTGTCAGATAGAACTAGTGG+GGG + chr5_2:10277288-10277307 Msa0756210:five_prime_UTR 45.0%
CGGCCAAGATAAACCATGTT+AGG - chr5_2:10277416-10277435 None:intergenic 45.0%
TTTATCTTGGCCGGTCTCTT+TGG + chr5_2:10277423-10277442 Msa0756210:five_prime_UTR 45.0%
CGAATCTTTCCCACAAACCA+AGG - chr5_2:10277559-10277578 None:intergenic 45.0%
! GGGAAAGATTCGGTCATACA+AGG + chr5_2:10277567-10277586 Msa0756210:five_prime_UTR 45.0%
CTTATTTCCAGAAGCTCTCC+AGG - chr5_2:10278292-10278311 None:intergenic 45.0%
GGAAGCTCTTGTTGGAGTTA+AGG - chr5_2:10278515-10278534 None:intergenic 45.0%
AGTGAGATGGAAGCTCTTGT+TGG - chr5_2:10278523-10278542 None:intergenic 45.0%
ACAAGAGCTTCCATCTCACT+AGG + chr5_2:10278523-10278542 Msa0756210:intron 45.0%
CAAGAGCTTCCATCTCACTA+GGG + chr5_2:10278524-10278543 Msa0756210:intron 45.0%
!! CACACTCTGAAGTTTGGTTC+AGG - chr5_2:10279002-10279021 None:intergenic 45.0%
ATTCACATCCACGACATTCC+TGG + chr5_2:10279626-10279645 Msa0756210:CDS 45.0%
! TCCTCAACTCCAGCATTTTC+AGG + chr5_2:10279804-10279823 Msa0756210:CDS 45.0%
TCCTGAAAATGCTGGAGTTG+AGG - chr5_2:10279808-10279827 None:intergenic 45.0%
TTTCCAGCTCCTGAAAATGC+TGG - chr5_2:10279816-10279835 None:intergenic 45.0%
CGACCATGGAAGAAGTGATT+TGG - chr5_2:10279864-10279883 None:intergenic 45.0%
ATCTTAAGTTCCTCCGACCA+TGG - chr5_2:10279878-10279897 None:intergenic 45.0%
TATCGAGTCCATAGCTACCA+AGG + chr5_2:10279910-10279929 Msa0756210:CDS 45.0%
! CTTCGTTCCCATTTTCCGAT+GGG - chr5_2:10279991-10280010 None:intergenic 45.0%
AAAATGGGAACGAAGCACAC+TGG + chr5_2:10279996-10280015 Msa0756210:CDS 45.0%
CGGTGTGAGGAAACAACTAA+TGG + chr5_2:10280021-10280040 Msa0756210:CDS 45.0%
TAAGTGCGTACACCTCTAGA+AGG + chr5_2:10280161-10280180 Msa0756210:CDS 45.0%
CGGTTTATTGCCGGTAGATA+TGG + chr5_2:10280258-10280277 Msa0756210:CDS 45.0%
!!! CTTTTGATTTGTGCGTCAGC+TGG + chr5_2:10280409-10280428 Msa0756210:CDS 45.0%
ACACGAGCATCAATCTTCGA+TGG + chr5_2:10280486-10280505 Msa0756210:CDS 45.0%
TTCGATGGAAGACGAATTGC+AGG + chr5_2:10280501-10280520 Msa0756210:CDS 45.0%
!!! CTCTCACTTTTGCTGATTCC+AGG - chr5_2:10280838-10280857 None:intergenic 45.0%
CTGGAATCAGCAAAAGTGAG+AGG + chr5_2:10280836-10280855 Msa0756210:CDS 45.0%
!! TATGTAGGTTGATGGACTGC+AGG + chr5_2:10280866-10280885 Msa0756210:CDS 45.0%
! TCCTTTACGTGTCGTTGTAC+AGG + chr5_2:10280936-10280955 Msa0756210:CDS 45.0%
ACCTGTACAACGACACGTAA+AGG - chr5_2:10280940-10280959 None:intergenic 45.0%
GACCAACACAGAAGAGGAAT+GGG + chr5_2:10281086-10281105 Msa0756210:CDS 45.0%
ATCCCATTCCTCTTCTGTGT+TGG - chr5_2:10281091-10281110 None:intergenic 45.0%
GCCGCACTAAAACTATCAAG+TGG + chr5_2:10281156-10281175 Msa0756210:CDS 45.0%
!! TGCTGTTTCTGTCACTACTC+TGG - chr5_2:10281188-10281207 None:intergenic 45.0%
AACAGCAACAACAATGACGG+TGG + chr5_2:10281201-10281220 Msa0756210:CDS 45.0%
! AACAATGACGGTGGTGGTAT+AGG + chr5_2:10281210-10281229 Msa0756210:CDS 45.0%
AACAGTAGAAGCAGGGCTTT+CGG - chr5_2:10281352-10281371 None:intergenic 45.0%
CCTCATAGGCTCATCTTAAG+TGG - chr5_2:10281608-10281627 None:intergenic 45.0%
CCACTTAAGATGAGCCTATG+AGG + chr5_2:10281605-10281624 Msa0756210:three_prime_UTR 45.0%
AAGGAAAAGTTAGGGGGTGG+TGG + chr5_2:10276385-10276404 Msa0756210:five_prime_UTR 50.0%
AGGAAAAGTTAGGGGGTGGT+GGG + chr5_2:10276386-10276405 Msa0756210:five_prime_UTR 50.0%
GTTTGTGTAGCTAGCTGTGG+TGG + chr5_2:10276492-10276511 Msa0756210:five_prime_UTR 50.0%
TTTAATAGAGAGTGGGGCGG+TGG + chr5_2:10277266-10277285 Msa0756210:five_prime_UTR 50.0%
AAGCAATCCTGGAGAGCTTC+TGG + chr5_2:10278282-10278301 Msa0756210:intron 50.0%
TCAAAAGCAACAGGTCCTCC+AGG - chr5_2:10279647-10279666 None:intergenic 50.0%
!! ACTCCAGCATTTTCAGGAGC+TGG + chr5_2:10279810-10279829 Msa0756210:CDS 50.0%
ATCACTTCTTCCATGGTCGG+AGG + chr5_2:10279865-10279884 Msa0756210:CDS 50.0%
! CATCGAAGCCTTGGTAGCTA+TGG - chr5_2:10279921-10279940 None:intergenic 50.0%
CATAGCTACCAAGGCTTCGA+TGG + chr5_2:10279919-10279938 Msa0756210:CDS 50.0%
TTCGATGGATCCATCCAAGG+TGG + chr5_2:10279934-10279953 Msa0756210:CDS 50.0%
TATGACCACTCCACCTTGGA+TGG - chr5_2:10279947-10279966 None:intergenic 50.0%
TGTGTATGACCACTCCACCT+TGG - chr5_2:10279951-10279970 None:intergenic 50.0%
! GCTTCGTTCCCATTTTCCGA+TGG - chr5_2:10279992-10280011 None:intergenic 50.0%
TCTTCCACCCACCAATCCTT+TGG - chr5_2:10280049-10280068 None:intergenic 50.0%
TGCCCCGGAAACATTTCCAT+TGG - chr5_2:10280125-10280144 None:intergenic 50.0%
AATGTTTCCGGGGCAGTTGT+CGG + chr5_2:10280130-10280149 Msa0756210:CDS 50.0%
! TACACCTCTAGAAGGTTGCC+TGG + chr5_2:10280169-10280188 Msa0756210:CDS 50.0%
GAAACCAGGCAACCTTCTAG+AGG - chr5_2:10280176-10280195 None:intergenic 50.0%
TTGCCGGTAGATATGGGAAG+TGG + chr5_2:10280265-10280284 Msa0756210:CDS 50.0%
GAGCCACTTCCCATATCTAC+CGG - chr5_2:10280271-10280290 None:intergenic 50.0%
GATATGGGAAGTGGCTCATG+CGG + chr5_2:10280274-10280293 Msa0756210:CDS 50.0%
GATCACGTGCAATCTCAGCA+AGG - chr5_2:10280597-10280616 None:intergenic 50.0%
AGACCGTCATGAGACTGTCT+AGG - chr5_2:10280673-10280692 None:intergenic 50.0%
TGCATGCAGTGCAGAATGAG+CGG + chr5_2:10280911-10280930 Msa0756210:CDS 50.0%
TGATCTTCCCGGTTCCATCA+GGG + chr5_2:10281020-10281039 Msa0756210:CDS 50.0%
ATGCAATGCCCTGATGGAAC+CGG - chr5_2:10281031-10281050 None:intergenic 50.0%
TGAACTACCGTGAGAACCAC+CGG - chr5_2:10281055-10281074 None:intergenic 50.0%
GTGGTTCTCACGGTAGTTCA+AGG + chr5_2:10281055-10281074 Msa0756210:CDS 50.0%
TACCACGACCAACACAGAAG+AGG + chr5_2:10281080-10281099 Msa0756210:CDS 50.0%
! TTCCTCTTCTGTGTTGGTCG+TGG - chr5_2:10281085-10281104 None:intergenic 50.0%
CGACCAACACAGAAGAGGAA+TGG + chr5_2:10281085-10281104 Msa0756210:CDS 50.0%
AGAAGAGGAATGGGATGCTG+TGG + chr5_2:10281095-10281114 Msa0756210:CDS 50.0%
AGCAACAACAATGACGGTGG+TGG + chr5_2:10281204-10281223 Msa0756210:CDS 50.0%
! CTTCTAGCTGAGACTGACTG+TGG + chr5_2:10281526-10281545 Msa0756210:three_prime_UTR 50.0%
GACTGTGGCTTGAGGTATGA+TGG + chr5_2:10281541-10281560 Msa0756210:three_prime_UTR 50.0%
AACAAAACCGGGTCCCTCAT+AGG - chr5_2:10281622-10281641 None:intergenic 50.0%
GGAAAAGTTAGGGGGTGGTG+GGG + chr5_2:10276387-10276406 Msa0756210:five_prime_UTR 55.0%
! GAAAAGTTAGGGGGTGGTGG+GGG + chr5_2:10276388-10276407 Msa0756210:five_prime_UTR 55.0%
CTGGTTGGACCCTAGTGAGA+TGG - chr5_2:10278536-10278555 None:intergenic 55.0%
CAGGTATGTGGCAACTGAGC+TGG + chr5_2:10279315-10279334 Msa0756210:intron 55.0%
CACATCCACGACATTCCTGG+AGG + chr5_2:10279629-10279648 Msa0756210:CDS 55.0%
GGATGGATCCATCGAAGCCT+TGG - chr5_2:10279930-10279949 None:intergenic 55.0%
GGCTTCGATGGATCCATCCA+AGG + chr5_2:10279931-10279950 Msa0756210:CDS 55.0%
TGGATCCATCCAAGGTGGAG+TGG + chr5_2:10279939-10279958 Msa0756210:CDS 55.0%
GGGAACGAAGCACACTGGAA+CGG + chr5_2:10280001-10280020 Msa0756210:CDS 55.0%
AAGCACACTGGAACGGTGTG+AGG + chr5_2:10280008-10280027 Msa0756210:CDS 55.0%
! GGTTCCAAAGGATTGGTGGG+TGG + chr5_2:10280042-10280061 Msa0756210:CDS 55.0%
CGGTGAGATCCGAACTGATG+CGG + chr5_2:10280347-10280366 Msa0756210:CDS 55.0%
TGAGATCCGAACTGATGCGG+AGG + chr5_2:10280350-10280369 Msa0756210:CDS 55.0%
TCCGAACTGATGCGGAGGAT+AGG + chr5_2:10280355-10280374 Msa0756210:CDS 55.0%
GCCTATCCTCCGCATCAGTT+CGG - chr5_2:10280359-10280378 None:intergenic 55.0%
GGAGATCAGAAGCCCCAAGA+TGG + chr5_2:10280522-10280541 Msa0756210:CDS 55.0%
ACGAGCACTCCTGATCTTCC+CGG + chr5_2:10281009-10281028 Msa0756210:CDS 55.0%
CTGATGGAACCGGGAAGATC+AGG - chr5_2:10281021-10281040 None:intergenic 55.0%
CTGATCTTCCCGGTTCCATC+AGG + chr5_2:10281019-10281038 Msa0756210:CDS 55.0%
TGCAATGCCCTGATGGAACC+GGG - chr5_2:10281030-10281049 None:intergenic 55.0%
!! TCCATCAGGGCATTGCATCC+CGG + chr5_2:10281033-10281052 Msa0756210:CDS 55.0%
TTGCATCCCGGTGGTTCTCA+CGG + chr5_2:10281045-10281064 Msa0756210:CDS 55.0%
GAACTACCGTGAGAACCACC+GGG - chr5_2:10281054-10281073 None:intergenic 55.0%
GCTTTCGGACGTATCAGAGC+TGG - chr5_2:10281337-10281356 None:intergenic 55.0%
CTGAGACTGACTGTGGCTTG+AGG + chr5_2:10281533-10281552 Msa0756210:three_prime_UTR 55.0%
AGATGAGCCTATGAGGGACC+CGG + chr5_2:10281612-10281631 Msa0756210:three_prime_UTR 55.0%
CAGGTCCTCCAGGAATGTCG+TGG - chr5_2:10279637-10279656 None:intergenic 60.0%
AGTTGCAGCTCGCTGTGCAG+CGG + chr5_2:10279721-10279740 Msa0756210:CDS 60.0%
AGCTTCTCCGACAACTGCCC+CGG - chr5_2:10280140-10280159 None:intergenic 60.0%
TGATGCGGAGGATAGGCCAG+AGG + chr5_2:10280362-10280381 Msa0756210:CDS 60.0%
GAGGATAGGCCAGAGGCTTG+AGG + chr5_2:10280369-10280388 Msa0756210:CDS 60.0%
GATAGGCCAGAGGCTTGAGG+AGG + chr5_2:10280372-10280391 Msa0756210:CDS 60.0%
CCAGAGGCTTGAGGAGGCTA+CGG + chr5_2:10280378-10280397 Msa0756210:CDS 60.0%
ACCGGGATGCAATGCCCTGA+TGG - chr5_2:10281037-10281056 None:intergenic 60.0%
!! ATCAGGGCATTGCATCCCGG+TGG + chr5_2:10281036-10281055 Msa0756210:CDS 60.0%
CCGTAGCCTCCTCAAGCCTC+TGG - chr5_2:10280381-10280400 None:intergenic 65.0%
GAGGCTTGAGGAGGCTACGG+TGG + chr5_2:10280381-10280400 Msa0756210:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 10276373 10281987 10276373 ID=Msa0756210;Name=Msa0756210
chr5_2 mRNA 10276373 10281987 10276373 ID=Msa0756210-mRNA-1;Parent=Msa0756210;Name=Msa0756210-mRNA-1;_AED=0.02;_eAED=0.02;_QI=999|1|1|1|0.75|0.6|5|562|630
chr5_2 exon 10276373 10276725 10276373 ID=Msa0756210-mRNA-1:exon:4673;Parent=Msa0756210-mRNA-1
chr5_2 exon 10277090 10277797 10277090 ID=Msa0756210-mRNA-1:exon:4674;Parent=Msa0756210-mRNA-1
chr5_2 exon 10279318 10279387 10279318 ID=Msa0756210-mRNA-1:exon:4675;Parent=Msa0756210-mRNA-1
chr5_2 exon 10279557 10280720 10279557 ID=Msa0756210-mRNA-1:exon:4676;Parent=Msa0756210-mRNA-1
chr5_2 exon 10280829 10281987 10280829 ID=Msa0756210-mRNA-1:exon:4677;Parent=Msa0756210-mRNA-1
chr5_2 five_prime_UTR 10276373 10276725 10276373 ID=Msa0756210-mRNA-1:five_prime_utr;Parent=Msa0756210-mRNA-1
chr5_2 five_prime_UTR 10277090 10277735 10277090 ID=Msa0756210-mRNA-1:five_prime_utr;Parent=Msa0756210-mRNA-1
chr5_2 CDS 10277736 10277797 10277736 ID=Msa0756210-mRNA-1:cds;Parent=Msa0756210-mRNA-1
chr5_2 CDS 10279318 10279387 10279318 ID=Msa0756210-mRNA-1:cds;Parent=Msa0756210-mRNA-1
chr5_2 CDS 10279557 10280720 10279557 ID=Msa0756210-mRNA-1:cds;Parent=Msa0756210-mRNA-1
chr5_2 CDS 10280829 10281425 10280829 ID=Msa0756210-mRNA-1:cds;Parent=Msa0756210-mRNA-1
chr5_2 three_prime_UTR 10281426 10281987 10281426 ID=Msa0756210-mRNA-1:three_prime_utr;Parent=Msa0756210-mRNA-1
Gene Sequence

>Msa0756210

ATGAAGTTTATGAAACTTGGATCTAAGCCTGATTCTTTTCAAAATGATGGAGATAATGTTAGGTATGTGGCAACTGAGCTGGCATCTGACATAGTCGTTAATGTTGGGGACGTAAAATTTTATCTACATAAGTTTCCACTTTTGTCCAAAAGTTTACGCTTGCAAAAGTTAGTTTCAAACACAGATGAGGAGAATGACGAAATTCACATCCACGACATTCCTGGAGGACCTGTTGCTTTTGAAATATGTGCAAAGTTCTGTTATGGTATGGTTGTCACTCTAAATGCATACAATGTAGTTGCAGCTCGCTGTGCAGCGGAGTATCTTGAGATGTACGAGACCATTGAAAAGGGAAATCTCATCTACAAGATTGAAGTTTTCCTCAACTCCAGCATTTTCAGGAGCTGGAAAGATTCTATTATTGTTCTACAAACAACCAAATCACTTCTTCCATGGTCGGAGGAACTTAAGATCGTGAGCCATTGTATCGAGTCCATAGCTACCAAGGCTTCGATGGATCCATCCAAGGTGGAGTGGTCATACACATATAACAGGAAAAAGCTCCCATCGGAAAATGGGAACGAAGCACACTGGAACGGTGTGAGGAAACAACTAATGGTTCCAAAGGATTGGTGGGTGGAAGATCTTTGCGAGCTCCAACTTGATCTCTATAAGCGAGTCCTGTCAACTATTACAACCAATGGAAATGTTTCCGGGGCAGTTGTCGGAGAAGCTCTAAGTGCGTACACCTCTAGAAGGTTGCCTGGTTTCAATAAGGGTGTTATCCAGAGTGGTGATATCACAAAGAATAGATTATTATTGGAGACTATTGTCGGTTTATTGCCGGTAGATATGGGAAGTGGCTCATGCGGTTTCTCGCTGAAGTTATTGAAAGTGGCTATTCAACTGGATTGTGAAGTGTCGGTGAGATCCGAACTGATGCGGAGGATAGGCCAGAGGCTTGAGGAGGCTACGGTGGCTGATCTTTTGATTTGTGCGTCAGCTGGTGAAACAACTCACGATGTTGAAACTGTGCAGAAGCTAGTTGAAGTGTTTGTAGCACACGAGCATCAATCTTCGATGGAAGACGAATTGCAGGAGATCAGAAGCCCCAAGATGGTATCAAATACTTCGAGCAAGATAAAGGTTGCAAAGCTTGTCGATAGCTACCTTGCTGAGATTGCACGTGATCCTAATCTGCCTCTTCTCAGTTTTGTGAACATCGCCGATTTGGTATCAAGCTTTCCTAGACAGTCTCATGACGGTCTTTATCGTGCCATTGACATGTATTTAAAGGAACATCCTGGAATCAGCAAAAGTGAGAGGAAAAGAATATGTAGGTTGATGGACTGCAGGAAGCTATCTGCAGAAGCTTGCATGCATGCAGTGCAGAATGAGCGGCTTCCTTTACGTGTCGTTGTACAGGTTCTCTTCTTTGAGCAGATGAGAGCTTCAACAACATCATCATCAGGAGGCACGAGCACTCCTGATCTTCCCGGTTCCATCAGGGCATTGCATCCCGGTGGTTCTCACGGTAGTTCAAGGTCTACCACGACCAACACAGAAGAGGAATGGGATGCTGTGGCAACAGCAGAAGACGTAAAAGTTCTGAAAGGGGAACTCGCCGCACTAAAACTATCAAGTGGAGGTAGCCAGAGTAGTGACAGAAACAGCAACAACAATGACGGTGGTGGTATAGGCAATGCAGAAAAAGTAGCTGCTAACAAAATGAAAGGCTTCCTTATGTCCAAGAAGTTATTCTCTAAGCTTTGGTCGAGCAAAGAAAAAAACGGAGAGATTACCAGCTCTGATACGTCCGAAAGCCCTGCTTCTACTGTTGTTGAGGAGACAAAATCTACGCCATCTAGAAGTAGGAGACATTCAGTATCTTAA
Protein sequence

>Msa0756210

MKFMKLGSKPDSFQNDGDNVRYVATELASDIVVNVGDVKFYLHKFPLLSKSLRLQKLVSNTDEENDEIHIHDIPGGPVAFEICAKFCYGMVVTLNAYNVVAARCAAEYLEMYETIEKGNLIYKIEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEELKIVSHCIESIATKASMDPSKVEWSYTYNRKKLPSENGNEAHWNGVRKQLMVPKDWWVEDLCELQLDLYKRVLSTITTNGNVSGAVVGEALSAYTSRRLPGFNKGVIQSGDITKNRLLLETIVGLLPVDMGSGSCGFSLKLLKVAIQLDCEVSVRSELMRRIGQRLEEATVADLLICASAGETTHDVETVQKLVEVFVAHEHQSSMEDELQEIRSPKMVSNTSSKIKVAKLVDSYLAEIARDPNLPLLSFVNIADLVSSFPRQSHDGLYRAIDMYLKEHPGISKSERKRICRLMDCRKLSAEACMHAVQNERLPLRVVVQVLFFEQMRASTTSSSGGTSTPDLPGSIRALHPGGSHGSSRSTTTNTEEEWDAVATAEDVKVLKGELAALKLSSGGSQSSDRNSNNNDGGGIGNAEKVAANKMKGFLMSKKLFSKLWSSKEKNGEITSSDTSESPASTVVEETKSTPSRSRRHSVS*