AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0835370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0835370 MtrunA17_Chr5g0401341 98.571 630 9 0 1 630 1 630 0.0 1285
Msa0835370 MtrunA17_Chr1g0207461 62.323 637 221 9 1 630 1 625 0.0 766
Msa0835370 MtrunA17_Chr1g0150191 50.233 645 278 13 1 630 1 617 0.0 573
Msa0835370 MtrunA17_Chr8g0367891 43.402 629 279 17 1 593 1 588 8.12e-146 435
Msa0835370 MtrunA17_Chr5g0412591 40.775 645 295 14 1 599 1 604 9.57e-138 415
Msa0835370 MtrunA17_Chr4g0050021 38.908 586 304 12 5 545 23 599 1.85e-134 409
Msa0835370 MtrunA17_Chr4g0076521 42.659 504 253 8 1 490 1 482 2.25e-134 406
Msa0835370 MtrunA17_Chr2g0279481 38.851 592 302 11 5 545 23 605 1.72e-130 399
Msa0835370 MtrunA17_Chr2g0303541 42.351 536 272 11 1 508 1 527 4.79e-128 391
Msa0835370 MtrunA17_Chr2g0290741 39.521 501 263 8 1 490 1 472 2.09e-117 361
Msa0835370 MtrunA17_Chr2g0285511 38.198 555 309 13 1 535 1 541 8.38e-109 340
Msa0835370 MtrunA17_Chr8g0382231 33.045 578 281 14 11 545 38 552 5.58e-103 326
Msa0835370 MtrunA17_Chr1g0181181 38.224 518 260 11 1 490 1 486 1.30e-102 323
Msa0835370 MtrunA17_Chr2g0320691 38.048 502 277 9 27 500 23 518 5.75e-102 323
Msa0835370 MtrunA17_Chr4g0010091 38.289 491 275 10 19 492 21 500 2.63e-101 321
Msa0835370 MtrunA17_Chr5g0401451 34.295 624 363 15 24 630 37 630 3.11e-101 321
Msa0835370 MtrunA17_Chr4g0053841 36.550 487 287 7 24 501 10 483 1.13e-98 313
Msa0835370 MtrunA17_Chr8g0374011 36.523 512 263 11 22 483 15 514 4.61e-94 303
Msa0835370 MtrunA17_Chr1g0199631 39.440 464 251 13 45 487 8 462 1.79e-93 299
Msa0835370 MtrunA17_Chr1g0195911 35.714 490 273 9 25 492 34 503 3.40e-92 297
Msa0835370 MtrunA17_Chr7g0245201 35.907 518 287 14 23 515 57 554 7.57e-89 289
Msa0835370 MtrunA17_Chr7g0268781 34.247 511 290 11 25 510 34 523 8.92e-84 275
Msa0835370 MtrunA17_Chr3g0108331 34.511 481 265 9 26 491 23 468 9.60e-84 273
Msa0835370 MtrunA17_Chr1g0191711 30.943 488 280 8 28 503 59 501 3.54e-74 248
Msa0835370 MtrunA17_Chr5g0432861 31.174 494 281 9 26 497 24 480 1.12e-71 242
Msa0835370 MtrunA17_Chr2g0332281 39.649 285 144 4 212 483 24 293 2.12e-55 194
Msa0835370 MtrunA17_Chr4g0003891 39.576 283 145 5 212 483 46 313 1.85e-53 189
Msa0835370 MtrunA17_Chr1g0163311 27.083 480 294 12 30 481 6 457 2.42e-44 166
Msa0835370 MtrunA17_Chr4g0023801 26.580 459 292 11 36 481 14 440 4.34e-37 145
Msa0835370 MtrunA17_Chr4g0037661 24.390 492 317 9 28 488 4 471 9.32e-35 139
Msa0835370 MtrunA17_Chr2g0280541 26.509 381 250 9 94 469 3 358 4.11e-28 117
Msa0835370 MtrunA17_Chr1g0206621 36.000 150 92 2 31 177 72 220 8.71e-23 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0835370 AT2G14820.2 59.000 600 216 9 1 589 1 581 0.0 688
Msa0835370 AT2G14820.1 59.000 600 216 9 1 589 1 581 0.0 688
Msa0835370 AT4G37590.1 55.412 619 192 17 1 600 1 554 0.0 635
Msa0835370 AT5G67440.3 56.180 623 198 15 1 611 1 560 0.0 631
Msa0835370 AT5G67440.1 56.180 623 198 15 1 611 1 560 0.0 631
Msa0835370 AT5G67440.2 53.952 582 193 15 42 611 5 523 0.0 556
Msa0835370 AT2G23050.1 57.661 496 163 8 1 489 1 456 0.0 544
Msa0835370 AT4G31820.1 46.865 606 253 13 1 602 1 541 2.52e-176 513
Msa0835370 AT1G67900.5 43.701 643 289 15 1 592 1 621 4.01e-158 468
Msa0835370 AT1G67900.1 43.701 643 289 15 1 592 1 621 4.01e-158 468
Msa0835370 AT1G67900.3 43.701 643 289 15 1 592 1 621 4.01e-158 468
Msa0835370 AT1G67900.6 43.701 643 289 15 1 592 1 621 4.01e-158 468
Msa0835370 AT1G67900.2 43.701 643 289 15 1 592 1 621 4.01e-158 468
Msa0835370 AT1G67900.4 43.701 643 289 15 1 592 1 621 4.01e-158 468
Msa0835370 AT4G31820.2 45.487 554 231 14 54 602 1 488 1.93e-147 437
Msa0835370 AT2G23050.2 55.000 380 130 7 111 489 1 340 4.09e-131 390
Msa0835370 AT3G26490.1 42.533 529 260 12 1 495 1 519 1.70e-127 388
Msa0835370 AT3G26490.3 42.533 529 260 12 1 495 1 519 1.70e-127 388
Msa0835370 AT3G26490.4 42.533 529 260 12 1 495 1 519 1.70e-127 388
Msa0835370 AT5G47800.3 39.686 509 270 9 1 494 1 487 5.26e-123 376
Msa0835370 AT5G47800.1 39.686 509 270 9 1 494 1 487 5.26e-123 376
Msa0835370 AT5G47800.4 39.686 509 270 9 1 494 1 487 5.26e-123 376
Msa0835370 AT5G03250.1 40.926 540 280 14 1 514 1 527 3.14e-121 372
Msa0835370 AT5G47800.2 39.489 509 271 8 1 494 114 600 3.93e-121 374
Msa0835370 AT1G30440.1 39.114 542 289 10 1 509 1 534 1.73e-119 370
Msa0835370 AT5G13600.1 40.237 507 273 10 1 487 1 497 5.55e-110 343
Msa0835370 AT3G26490.2 41.202 466 230 12 1 432 1 456 3.21e-100 315
Msa0835370 AT3G44820.1 36.414 541 300 11 8 512 5 537 1.05e-99 318
Msa0835370 AT5G67385.1 39.490 471 256 9 24 483 22 474 4.92e-99 315
Msa0835370 AT5G48800.1 39.030 474 266 8 22 489 36 492 9.24e-96 306
Msa0835370 AT1G03010.2 35.507 552 305 11 25 546 7 537 1.77e-93 300
Msa0835370 AT1G03010.3 35.432 556 308 11 21 546 29 563 3.10e-93 301
Msa0835370 AT1G03010.1 35.507 552 305 11 25 546 34 564 4.69e-93 300
Msa0835370 AT5G66560.1 34.629 566 271 13 22 505 14 562 2.84e-90 294
Msa0835370 AT2G47860.1 37.060 483 257 11 25 483 35 494 4.82e-90 292
Msa0835370 AT5G10250.2 33.592 515 257 9 11 483 35 506 1.30e-88 288
Msa0835370 AT5G67385.4 38.702 447 245 9 48 483 1 429 7.39e-88 284
Msa0835370 AT5G67385.5 38.702 447 245 9 48 483 1 429 7.39e-88 284
Msa0835370 AT5G67385.2 38.702 447 245 9 48 483 1 429 7.39e-88 284
Msa0835370 AT5G67385.3 38.702 447 245 9 48 483 1 429 7.39e-88 284
Msa0835370 AT3G08660.1 36.759 506 273 16 23 515 30 501 9.80e-88 285
Msa0835370 AT5G10250.1 34.274 496 251 9 18 483 41 491 1.04e-86 283
Msa0835370 AT5G66560.3 34.489 548 260 13 40 505 3 533 1.53e-85 280
Msa0835370 AT2G47860.3 35.375 506 257 12 25 483 35 517 1.06e-84 279
Msa0835370 AT3G08570.1 34.647 482 285 10 23 489 30 496 4.25e-83 273
Msa0835370 AT5G66560.4 36.632 475 247 11 68 505 66 523 3.43e-82 271
Msa0835370 AT3G50840.1 36.626 486 247 11 22 483 11 459 8.17e-82 269
Msa0835370 AT5G03250.2 38.642 427 227 11 111 514 1 415 3.55e-81 265
Msa0835370 AT2G30520.1 34.864 479 257 8 24 483 27 469 1.34e-80 266
Msa0835370 AT3G08660.3 36.421 475 255 16 54 515 1 441 4.47e-78 258
Msa0835370 AT3G49970.1 35.469 437 225 9 40 468 7 394 1.16e-75 251
Msa0835370 AT3G49970.2 35.469 437 225 9 40 468 7 394 1.16e-75 251
Msa0835370 AT2G30520.2 34.430 456 244 8 47 483 2 421 2.00e-72 243
Msa0835370 AT2G30520.3 34.430 456 244 8 47 483 2 421 2.00e-72 243
Msa0835370 AT3G50840.2 35.652 460 235 11 48 483 1 423 2.17e-70 237
Msa0835370 AT3G50840.3 35.652 460 235 11 48 483 1 423 2.17e-70 237
Msa0835370 AT2G47860.4 34.633 436 238 11 21 432 31 443 2.57e-67 227
Msa0835370 AT3G08660.2 36.124 418 227 13 23 432 30 415 5.18e-65 220
Msa0835370 AT2G47860.6 32.898 459 238 12 21 432 31 466 3.43e-62 214
Msa0835370 AT5G66560.2 32.298 483 238 12 22 432 14 479 6.89e-62 213
Msa0835370 AT5G64330.2 40.959 271 137 6 7 259 33 298 1.88e-60 214
Msa0835370 AT5G64330.2 41.379 261 122 3 270 499 373 633 6.05e-54 196
Msa0835370 AT5G64330.1 40.959 271 137 6 7 259 33 298 5.38e-60 214
Msa0835370 AT5G64330.1 39.465 299 155 5 270 545 373 668 1.25e-55 202
Msa0835370 AT2G47860.5 35.000 400 209 10 111 483 1 376 1.27e-59 208
Msa0835370 AT2G47860.2 35.000 400 209 10 111 483 1 376 1.27e-59 208
Msa0835370 AT5G48130.1 28.629 496 297 13 25 502 37 493 6.41e-57 203
Msa0835370 AT5G64330.3 41.379 261 122 3 270 499 314 574 2.52e-54 196
Msa0835370 AT5G64330.3 40.083 242 122 6 37 259 2 239 8.76e-50 183
Msa0835370 AT1G52770.1 33.898 354 198 6 212 545 28 365 9.87e-53 188
Msa0835370 AT3G15570.1 34.343 297 157 6 212 485 29 310 1.43e-45 168
Msa0835370 AT5G17580.2 27.651 481 315 8 14 487 7 461 2.27e-43 164
Msa0835370 AT5G17580.1 28.051 467 303 8 28 487 6 446 3.25e-42 160
Msa0835370 AT3G19850.1 24.887 442 292 8 68 490 52 472 3.34e-40 155
Msa0835370 AT1G50280.1 25.053 471 316 11 29 477 5 460 2.95e-39 152
Msa0835370 AT1G50280.2 25.882 425 285 9 68 477 18 427 4.95e-39 150
Msa0835370 AT3G03510.1 29.056 413 233 10 76 483 4 361 1.26e-38 149
Msa0835370 AT3G22104.1 25.714 455 285 15 28 468 5 420 1.79e-28 120
Msa0835370 AT3G22104.4 24.737 380 239 11 98 468 4 345 9.61e-20 92.8
Msa0835370 AT3G22104.2 24.737 380 239 11 98 468 4 345 9.61e-20 92.8
Msa0835370 AT3G22104.3 24.737 380 239 11 98 468 4 345 9.61e-20 92.8
Msa0835370 AT3G49900.1 42.857 98 49 4 387 482 214 306 1.03e-14 77.8
Msa0835370 AT3G49900.2 41.584 101 49 5 387 482 214 309 4.92e-13 72.4

Find 220 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGATATTGTTTCAGGTTTA+TGG 0.106681 5_4:-8697246 None:intergenic
TGCCATTGACATGTATTTAA+AGG 0.151112 5_4:+8701244 Msa0835370:CDS
CCACTTTCTCTCTCAACTTA+TGG 0.174156 5_4:-8696993 None:intergenic
GGTGATTTGAAAAGCTATTT+TGG 0.174997 5_4:+8698243 Msa0835370:five_prime_UTR
CACAAAGAATAGATTATTAT+TGG 0.178237 5_4:+8700770 Msa0835370:CDS
GAAAACACAGATATTGTTTC+AGG 0.209047 5_4:-8697253 None:intergenic
CGGTTTATTGCCGGTAGATA+TGG 0.212856 5_4:+8700803 Msa0835370:CDS
TTTATCTTGGCCGGTCTCTT+TGG 0.239494 5_4:+8697975 Msa0835370:five_prime_UTR
CACAAACTCTTAACCAAGTT+TGG 0.239988 5_4:-8698215 None:intergenic
ACAACCAATGGAAATGTTTC+CGG 0.248773 5_4:+8700663 Msa0835370:CDS
GAACATGTTGCTTACTAAAA+TGG 0.270449 5_4:-8698007 None:intergenic
AAGCTTAGAGAATAACTTCT+TGG 0.287524 5_4:-8701825 None:intergenic
AAAATTATGTTTCTGAATCT+TGG 0.287780 5_4:-8697798 None:intergenic
AGAAACAAAGAAAGGGAAAA+AGG 0.292827 5_4:+8696919 None:intergenic
AAGTGGGAACATTCTGAAAT+TGG 0.292864 5_4:+8697010 Msa0835370:five_prime_UTR
AAGAAACACAAAGGTTTGTT+TGG 0.305808 5_4:-8697214 None:intergenic
CATTGTTGCAATTTATTTGC+AGG 0.311860 5_4:+8702442 Msa0835370:three_prime_UTR
AGATCAAAGTAGAAGATAAA+AGG 0.321417 5_4:-8698160 None:intergenic
TGAATGTTGAGTATGGAATT+TGG 0.329924 5_4:+8697679 Msa0835370:five_prime_UTR
CTGATCTTCCCGGTTCCATC+AGG 0.334384 5_4:+8701564 Msa0835370:CDS
TTCGATGGAAGACGAATTGC+AGG 0.353029 5_4:+8701046 Msa0835370:CDS
CAACCAATGGAAATGTTTCC+GGG 0.363516 5_4:+8700664 Msa0835370:CDS
GAAGTATTTGATACCATCTT+GGG 0.363641 5_4:-8701080 None:intergenic
CAAAAGATGAGGCTTGAAAA+AGG 0.364405 5_4:-8697097 None:intergenic
AAAATGATGGAGATAATGTT+AGG 0.372524 5_4:+8698328 Msa0835370:CDS
AGAAGTTATTCTCTAAGCTT+TGG 0.373875 5_4:+8701828 Msa0835370:CDS
GACTATTGTCGGTTTATTGC+CGG 0.376124 5_4:+8700794 Msa0835370:CDS
CGACCATGGAAGAAGTGATT+TGG 0.379163 5_4:-8700406 None:intergenic
CAAACTTGGTTAAGAGTTTG+TGG 0.383904 5_4:+8698216 Msa0835370:five_prime_UTR
ATGCAATGCCCTGATGGAAC+CGG 0.384464 5_4:-8701573 None:intergenic
AGAATAACTTCTTGGACATA+AGG 0.384603 5_4:-8701817 None:intergenic
ATTCACATCCACGACATTCC+TGG 0.387097 5_4:+8700171 Msa0835370:CDS
ATTGAAAGTGGCTATTCAAC+TGG 0.388498 5_4:+8700857 Msa0835370:CDS
AAGGTTGCCTGGTTTCAATA+AGG 0.390063 5_4:+8700725 Msa0835370:CDS
CGAAGTATTTGATACCATCT+TGG 0.390134 5_4:-8701081 None:intergenic
TTGCCTAGTGTAGTTTGTAT+TGG 0.395707 5_4:+8702330 Msa0835370:three_prime_UTR
TCCTTTACGTGTCGTTGTAC+AGG 0.397548 5_4:+8701481 Msa0835370:CDS
CGGCCAAGATAAACCATGTT+AGG 0.398977 5_4:-8697965 None:intergenic
TCTTCCACCCACCAATCCTT+TGG 0.399577 5_4:-8700591 None:intergenic
AAATACTTCGAGCAAGATAA+AGG 0.402925 5_4:+8701094 Msa0835370:CDS
AACAATGACGGTGGTGGTAT+AGG 0.404070 5_4:+8701755 Msa0835370:CDS
TCGATCACTTTGGTAGCATT+AGG 0.404204 5_4:+8702026 Msa0835370:three_prime_UTR
GCACATATTTCAAAAGCAAC+AGG 0.406384 5_4:-8700198 None:intergenic
ATCTAACTAGCCTTGGTTTG+TGG 0.408714 5_4:+8698098 Msa0835370:five_prime_UTR
TCTAACTAGCCTTGGTTTGT+GGG 0.409928 5_4:+8698099 Msa0835370:five_prime_UTR
TGATTATAGTACAACAAAAC+CGG 0.410417 5_4:-8702176 None:intergenic
TGGTTAAGAGTTTGTGGAGT+AGG 0.420229 5_4:+8698222 Msa0835370:five_prime_UTR
AGGTTGCCTGGTTTCAATAA+GGG 0.420841 5_4:+8700726 Msa0835370:CDS
TCTCCTAACATGGTTTATCT+TGG 0.424055 5_4:+8697962 Msa0835370:five_prime_UTR
CTGACATAGTCGTTAATGTT+GGG 0.428946 5_4:+8699886 Msa0835370:CDS
TAGTGTGTGAATGTTGAGTA+TGG 0.431493 5_4:+8697672 Msa0835370:five_prime_UTR
GAAAAGAATATGTAGGTTGA+TGG 0.432349 5_4:+8701403 Msa0835370:CDS
ACGAGCACTCCTGATCTTCC+CGG 0.435726 5_4:+8701554 Msa0835370:CDS
CTCGCTGAAGTTATTGAAAG+TGG 0.436588 5_4:+8700845 Msa0835370:CDS
CATATATTTGTTCAGGTATG+TGG 0.437799 5_4:+8699848 Msa0835370:intron
AAACTGAGAAGAGGCAGATT+AGG 0.438663 5_4:-8701161 None:intergenic
GGTTTATTGCCGGTAGATAT+GGG 0.439454 5_4:+8700804 Msa0835370:CDS
CTGATGGAACCGGGAAGATC+AGG 0.442940 5_4:-8701563 None:intergenic
AACAGTAGAAGCAGGGCTTT+CGG 0.443529 5_4:-8701894 None:intergenic
CTTGGTTTGTGGGAAAGATT+CGG 0.444335 5_4:+8698109 Msa0835370:five_prime_UTR
AAGATGAAGTTTATGAAACT+TGG 0.446570 5_4:+8698285 Msa0835370:exon
GAATGTCTCCTACTTCTAGA+TGG 0.446578 5_4:-8701938 None:intergenic
CCATAAGTTGAGAGAGAAAG+TGG 0.447068 5_4:+8696993 Msa0835370:five_prime_UTR
GTGGTTCTCACGGTAGTTCA+AGG 0.447533 5_4:+8701600 Msa0835370:CDS
AAATTTCATCTAACTAGCCT+TGG 0.450635 5_4:+8698091 Msa0835370:five_prime_UTR
AAAAGCTCCCATCGGAAAAT+GGG 0.457088 5_4:+8700526 Msa0835370:CDS
AACAAAACCGGGTCCCTCAT+AGG 0.460036 5_4:-8702164 None:intergenic
TTATTATTGGAGACTATTGT+CGG 0.461332 5_4:+8700783 Msa0835370:CDS
CATTGGTTGTAATAGTTGAC+AGG 0.463502 5_4:-8700650 None:intergenic
AGTGGTCATACACATATAAC+AGG 0.463792 5_4:+8700502 Msa0835370:CDS
TTTGTTGTTGTTTCCAACAA+TGG 0.469010 5_4:-8697767 None:intergenic
TCCTCAACAACAGTAGAAGC+AGG 0.469108 5_4:-8701902 None:intergenic
CCACTTAAGATGAGCCTATG+AGG 0.469406 5_4:+8702150 Msa0835370:three_prime_UTR
TGCTGTTTCTGTCACTACTC+TGG 0.469581 5_4:-8701730 None:intergenic
GATGTACGAGACCATTGAAA+AGG 0.472920 5_4:+8700299 Msa0835370:CDS
ATCCCATTCCTCTTCTGTGT+TGG 0.473339 5_4:-8701633 None:intergenic
GTTGGTAATGTCTCCTAACA+TGG 0.479028 5_4:+8697952 Msa0835370:five_prime_UTR
TGAGGTATGATGGTTGTTTG+TGG 0.480322 5_4:+8702096 Msa0835370:three_prime_UTR
AACTAATGGTTCCAAAGGAT+TGG 0.481019 5_4:+8700580 Msa0835370:CDS
CTAACATGGTTTATCTTGGC+CGG 0.484256 5_4:+8697966 Msa0835370:five_prime_UTR
CCGTAGCCTCCTCAAGCCTC+TGG 0.484339 5_4:-8700923 None:intergenic
GCCTATCCTCTGCATCAGTT+CGG 0.486166 5_4:-8700901 None:intergenic
TTCCTCTTCTGTGTTGGTCG+TGG 0.488018 5_4:-8701627 None:intergenic
GTGGTGTCTAAATCCATTGT+TGG 0.491175 5_4:+8697754 Msa0835370:five_prime_UTR
ATGAATGTGTTTGTGTGTGT+TGG 0.492957 5_4:+8697915 Msa0835370:five_prime_UTR
ATGTACGAGACCATTGAAAA+GGG 0.494912 5_4:+8700300 Msa0835370:CDS
AAGACGTAAAAGTTCTGAAA+GGG 0.496037 5_4:+8701672 Msa0835370:CDS
AGCTTCTCCGACAACTGCCC+CGG 0.496223 5_4:-8700682 None:intergenic
CCTCATAGGCTCATCTTAAG+TGG 0.498922 5_4:-8702150 None:intergenic
AACCTTTAAATACATGTCAA+TGG 0.499724 5_4:-8701246 None:intergenic
CATAGCTACCAAGGCTTCGA+TGG 0.501566 5_4:+8700464 Msa0835370:CDS
GGGAACATTCTGAAATTGGT+TGG 0.502141 5_4:+8697014 Msa0835370:five_prime_UTR
TATGTTATGCAGGAACATCC+TGG 0.502662 5_4:+8701362 Msa0835370:intron
TGTATAATCGTCGATCACTT+TGG 0.503342 5_4:+8702016 Msa0835370:three_prime_UTR
GCTTCAACAACATCATCATC+AGG 0.503463 5_4:+8701527 Msa0835370:CDS
ATATGTGCAAAGTTCTGTTA+TGG 0.503531 5_4:+8700213 Msa0835370:CDS
GACTGTGGCTTGAGGTATGA+TGG 0.504805 5_4:+8702086 Msa0835370:three_prime_UTR
GTGAGAGGAAAAGAATATGT+AGG 0.505622 5_4:+8701396 Msa0835370:CDS
GACCAACACAGAAGAGGAAT+GGG 0.506254 5_4:+8701631 Msa0835370:CDS
TGAACTACCGTGAGAACCAC+CGG 0.506443 5_4:-8701597 None:intergenic
CGGTGTGAGGAAACAACTAA+TGG 0.506709 5_4:+8700566 Msa0835370:CDS
AATCTACGCCATCTAGAAGT+AGG 0.507067 5_4:+8701930 Msa0835370:CDS
ACCGGGATGCAATGCCCTGA+TGG 0.507424 5_4:-8701579 None:intergenic
TCCTGAAAATGCTGGAGTTG+AGG 0.508475 5_4:-8700350 None:intergenic
TGCCCCGGAAACATTTCCAT+TGG 0.509798 5_4:-8700667 None:intergenic
CTGTCAACTATTACAACCAA+TGG 0.510029 5_4:+8700651 Msa0835370:CDS
ACCTGTACAACGACACGTAA+AGG 0.510885 5_4:-8701482 None:intergenic
TATGACCACTCCACCTTGGA+TGG 0.511110 5_4:-8700489 None:intergenic
TCAAAAGCAACAGGTCCTCC+AGG 0.511400 5_4:-8700189 None:intergenic
CATCGAAGCCTTGGTAGCTA+TGG 0.511487 5_4:-8700463 None:intergenic
AATGTTTCCGGGGCAGTTGT+CGG 0.511899 5_4:+8700675 Msa0835370:CDS
TTTAATAGAGAGTGGGGCGG+TGG 0.512625 5_4:+8697818 Msa0835370:five_prime_UTR
CGACCAACACAGAAGAGGAA+TGG 0.512670 5_4:+8701630 Msa0835370:CDS
CAGGTATGTGGCAACTGAGC+TGG 0.513876 5_4:+8699860 Msa0835370:intron
CCCTGCTTCTACTGTTGTTG+AGG 0.513974 5_4:+8701901 Msa0835370:CDS
ATTGTTGCAATTTATTTGCA+GGG 0.515311 5_4:+8702443 Msa0835370:three_prime_UTR
GGTTAATGAGAAACAAAGAA+AGG 0.515408 5_4:+8696911 None:intergenic
TTTCCAGCTCCTGAAAATGC+TGG 0.516969 5_4:-8700358 None:intergenic
CAACCAAATCACTTCTTCCA+TGG 0.518084 5_4:+8700403 Msa0835370:CDS
GGATGGATCCATCGAAGCCT+TGG 0.518873 5_4:-8700472 None:intergenic
GTTAATGAGAAACAAAGAAA+GGG 0.524317 5_4:+8696912 None:intergenic
TCCATCAGGGCATTGCATCC+CGG 0.525817 5_4:+8701578 Msa0835370:CDS
TACACCTCTAGAAGGTTGCC+TGG 0.530328 5_4:+8700714 Msa0835370:CDS
ATCTTAAGTTCCTCCGACCA+TGG 0.530439 5_4:-8700420 None:intergenic
TGCAATGCCCTGATGGAACC+GGG 0.532513 5_4:-8701572 None:intergenic
AGGAAAGCTTGATACCAAAT+CGG 0.533858 5_4:-8701195 None:intergenic
TATGTAGGTTGATGGACTGC+AGG 0.536125 5_4:+8701411 Msa0835370:CDS
TAATGGTTCCAAAGGATTGG+TGG 0.538641 5_4:+8700583 Msa0835370:CDS
CCAGAGGCTTGAGGAGGCTA+CGG 0.540725 5_4:+8700923 Msa0835370:CDS
TTGCCGGTAGATATGGGAAG+TGG 0.543251 5_4:+8700810 Msa0835370:CDS
GTAGCTGCTAACAAAATGAA+AGG 0.551181 5_4:+8701791 Msa0835370:CDS
TTGCATCCCGGTGGTTCTCA+CGG 0.551268 5_4:+8701590 Msa0835370:CDS
GGGAAAGATTCGGTCATACA+AGG 0.565114 5_4:+8698119 Msa0835370:five_prime_UTR
ACTAACTAGAATCAAATGCT+AGG 0.566777 5_4:+8702302 Msa0835370:three_prime_UTR
TGCAAAGTTCTGTTATGGTA+TGG 0.567366 5_4:+8700218 Msa0835370:CDS
TCTTTGTGATATCACCACTC+TGG 0.567643 5_4:-8700755 None:intergenic
TGTTGTACTATAATCAGAGA+AGG 0.567780 5_4:+8702183 Msa0835370:three_prime_UTR
GAAACAACTAATGGTTCCAA+AGG 0.569885 5_4:+8700575 Msa0835370:CDS
AGTTGCAGCTCGCTGTGCAG+CGG 0.570192 5_4:+8700266 Msa0835370:CDS
TAAGTGCGTACACCTCTAGA+AGG 0.571808 5_4:+8700706 Msa0835370:CDS
AGACCGTCATGAGACTGTCT+AGG 0.573268 5_4:-8701215 None:intergenic
GTGGTGTCAGATAGAACTAG+TGG 0.574514 5_4:+8697837 Msa0835370:five_prime_UTR
GAAGACGTAAAAGTTCTGAA+AGG 0.575342 5_4:+8701671 Msa0835370:CDS
GTAACAAAGTCCAAAGAGAC+CGG 0.578877 5_4:-8697985 None:intergenic
AGATGAGCCTATGAGGGACC+CGG 0.580189 5_4:+8702157 Msa0835370:three_prime_UTR
TGATCTTCCCGGTTCCATCA+GGG 0.583101 5_4:+8701565 Msa0835370:CDS
CACTTAAGATGAGCCTATGA+GGG 0.584475 5_4:+8702151 Msa0835370:three_prime_UTR
AATGGTTCCAAAGGATTGGT+GGG 0.585467 5_4:+8700584 Msa0835370:CDS
CAAAGGAATGGCAAAAGATG+AGG 0.585917 5_4:-8697108 None:intergenic
ACATGAACCAATCAAAGGAA+TGG 0.586672 5_4:-8697120 None:intergenic
TCTGACATAGTCGTTAATGT+TGG 0.590158 5_4:+8699885 Msa0835370:CDS
TGTGTTTGTGTAGCTAGCTG+TGG 0.593299 5_4:+8697042 Msa0835370:five_prime_UTR
GCTTTCGGACGTATCAGAGC+TGG 0.595171 5_4:-8701879 None:intergenic
GTTTGTGTAGCTAGCTGTGG+TGG 0.597001 5_4:+8697045 Msa0835370:five_prime_UTR
GAGGATAGGCCAGAGGCTTG+AGG 0.597693 5_4:+8700914 Msa0835370:CDS
CTCGCTTATAGAGATCAAGT+TGG 0.598194 5_4:-8700626 None:intergenic
AAAATGGGAACGAAGCACAC+TGG 0.598218 5_4:+8700541 Msa0835370:CDS
GTTAGTTTCAAACACAGATG+AGG 0.598340 5_4:+8700137 Msa0835370:CDS
CAAATCACTTCTTCCATGGT+CGG 0.598798 5_4:+8700407 Msa0835370:CDS
TGGTGTCAGATAGAACTAGT+GGG 0.601505 5_4:+8697838 Msa0835370:five_prime_UTR
TCCGAACTGATGCAGAGGAT+AGG 0.602865 5_4:+8700900 Msa0835370:CDS
GAGCCACTTCCCATATCTAC+CGG 0.602916 5_4:-8700813 None:intergenic
CACAAACATAAACATAAACA+AGG 0.604209 5_4:-8697151 None:intergenic
AGCAACAACAATGACGGTGG+TGG 0.606571 5_4:+8701749 Msa0835370:CDS
AGAAGAGGAATGGGATGCTG+TGG 0.608026 5_4:+8701640 Msa0835370:CDS
GGCTTCGATGGATCCATCCA+AGG 0.608155 5_4:+8700476 Msa0835370:CDS
GAGGCTTGAGGAGGCTACGG+TGG 0.609045 5_4:+8700926 Msa0835370:CDS
AAACTACATGAACCAATCAA+AGG 0.610942 5_4:-8697125 None:intergenic
CGAATCTTTCCCACAAACCA+AGG 0.613263 5_4:-8698108 None:intergenic
GGAGATCAGAAGCCCCAAGA+TGG 0.614219 5_4:+8701067 Msa0835370:CDS
AGGAGTTCAAAGAAGGGACA+TGG 0.614723 5_4:+8697640 Msa0835370:intron
TGACATAGTCGTTAATGTTG+GGG 0.615279 5_4:+8699887 Msa0835370:CDS
AAGTATTTGATACCATCTTG+GGG 0.615466 5_4:-8701079 None:intergenic
GCCGCACTAAAACTATCAAG+TGG 0.621390 5_4:+8701701 Msa0835370:CDS
AAGCACACTGGAACGGTGTG+AGG 0.624811 5_4:+8700553 Msa0835370:CDS
CTGAGACTGACTGTGGCTTG+AGG 0.625186 5_4:+8702078 Msa0835370:three_prime_UTR
AAACCAATACAAACTACACT+AGG 0.625511 5_4:-8702333 None:intergenic
CAGGTCCTCCAGGAATGTCG+TGG 0.625588 5_4:-8700179 None:intergenic
GATTATAGTACAACAAAACC+GGG 0.627016 5_4:-8702175 None:intergenic
TGGATCCATCCAAGGTGGAG+TGG 0.627703 5_4:+8700484 Msa0835370:CDS
TGTGTATGACCACTCCACCT+TGG 0.631504 5_4:-8700493 None:intergenic
CTGGAATCAGCAAAAGTGAG+AGG 0.633326 5_4:+8701381 Msa0835370:CDS
TACCACGACCAACACAGAAG+AGG 0.634888 5_4:+8701625 Msa0835370:CDS
ACACGAGCATCAATCTTCGA+TGG 0.639556 5_4:+8701031 Msa0835370:CDS
ATGTTCACAAAACTGAGAAG+AGG 0.639567 5_4:-8701170 None:intergenic
GGGAACGAAGCACACTGGAA+CGG 0.640951 5_4:+8700546 Msa0835370:CDS
AGAAACAGCAACAACAATGA+CGG 0.642249 5_4:+8701743 Msa0835370:CDS
AATAAGGGTGTTATCCAGAG+TGG 0.642711 5_4:+8700741 Msa0835370:CDS
TATCGAGTCCATAGCTACCA+AGG 0.646357 5_4:+8700455 Msa0835370:CDS
TAGCTATGGACTCGATACAA+TGG 0.647840 5_4:-8700449 None:intergenic
ATCACTTCTTCCATGGTCGG+AGG 0.648232 5_4:+8700410 Msa0835370:CDS
GGTGTCAGATAGAACTAGTG+GGG 0.648820 5_4:+8697839 Msa0835370:five_prime_UTR
TTGATATCAAAGAAACACAA+AGG 0.650391 5_4:-8697223 None:intergenic
GAAACCAGGCAACCTTCTAG+AGG 0.650655 5_4:-8700718 None:intergenic
GATATGGGAAGTGGCTCATG+CGG 0.650973 5_4:+8700819 Msa0835370:CDS
AGACGTAAAAGTTCTGAAAG+GGG 0.651354 5_4:+8701673 Msa0835370:CDS
TCAACTGGATTGTGAAGTGT+CGG 0.651439 5_4:+8700872 Msa0835370:CDS
CCTCAACAACAGTAGAAGCA+GGG 0.658156 5_4:-8701901 None:intergenic
GAACTACCGTGAGAACCACC+GGG 0.662467 5_4:-8701596 None:intergenic
GATAGGCCAGAGGCTTGAGG+AGG 0.663205 5_4:+8700917 Msa0835370:CDS
ATCAGGGCATTGCATCCCGG+TGG 0.664334 5_4:+8701581 Msa0835370:CDS
TGAGATCCGAACTGATGCAG+AGG 0.667969 5_4:+8700895 Msa0835370:CDS
ATAACACCCTTATTGAAACC+AGG 0.668210 5_4:-8700732 None:intergenic
AACCAATGGAAATGTTTCCG+GGG 0.669317 5_4:+8700665 Msa0835370:CDS
GGTTCCAAAGGATTGGTGGG+TGG 0.674076 5_4:+8700587 Msa0835370:CDS
CATAAGTTGAGAGAGAAAGT+GGG 0.674517 5_4:+8696994 Msa0835370:five_prime_UTR
CGCTTAACCTAACAAAACAG+TGG 0.676154 5_4:-8702376 None:intergenic
TTTCCTAGACAGTCTCATGA+CGG 0.681338 5_4:+8701212 Msa0835370:CDS
TGCATGCAGTGCAGAATGAG+CGG 0.681971 5_4:+8701456 Msa0835370:CDS
ACGATTATACAACGATGCAA+CGG 0.685114 5_4:-8702004 None:intergenic
CTTCTAGCTGAGACTGACTG+TGG 0.687790 5_4:+8702071 Msa0835370:three_prime_UTR
GCACTAAAACTATCAAGTGG+AGG 0.693236 5_4:+8701704 Msa0835370:CDS
GATCACGTGCAATCTCAGCA+AGG 0.693796 5_4:-8701139 None:intergenic
TGATGCAGAGGATAGGCCAG+AGG 0.699681 5_4:+8700907 Msa0835370:CDS
AACAGCAACAACAATGACGG+TGG 0.701652 5_4:+8701746 Msa0835370:CDS
GTGGCTGTCATCAAAAGATG+AGG 0.704835 5_4:+8697064 Msa0835370:five_prime_UTR
TCAACAACATCATCATCAGG+AGG 0.705468 5_4:+8701530 Msa0835370:CDS
CACATCCACGACATTCCTGG+AGG 0.714031 5_4:+8700174 Msa0835370:CDS
GTGTCAGATAGAACTAGTGG+GGG 0.721905 5_4:+8697840 Msa0835370:five_prime_UTR
TTCGATGGATCCATCCAAGG+TGG 0.725031 5_4:+8700479 Msa0835370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTACAAAATAAAGTTTAA+CGG + chr5_4:8698775-8698794 Msa0835370:intron 10.0%
!! ACATATTAAATACAAAATTA+AGG - chr5_4:8699712-8699731 None:intergenic 10.0%
!!! AAAATTTAAAATAAGAGGAT+CGG - chr5_4:8699369-8699388 None:intergenic 15.0%
!! TATTAAATACAAAATTAAGG+CGG - chr5_4:8699709-8699728 None:intergenic 15.0%
!!! TGATATTTTATGTTTTCTTT+TGG + chr5_4:8699791-8699810 Msa0835370:intron 15.0%
!! TTGTATACAATAATTACAAA+AGG - chr5_4:8699982-8700001 None:intergenic 15.0%
!! TGAAACATAAAAATCAACAT+GGG - chr5_4:8697369-8697388 None:intergenic 20.0%
!! ATGAAACATAAAAATCAACA+TGG - chr5_4:8697370-8697389 None:intergenic 20.0%
!!! AAGCATTTTTTTTAATCCAA+TGG + chr5_4:8697507-8697526 Msa0835370:intron 20.0%
!!! AAAATTATGTTTCTGAATCT+TGG - chr5_4:8697801-8697820 None:intergenic 20.0%
!!! AACATAATTTTAATAGAGAG+TGG + chr5_4:8697810-8697829 Msa0835370:five_prime_UTR 20.0%
!!! ACATAATTTTAATAGAGAGT+GGG + chr5_4:8697811-8697830 Msa0835370:five_prime_UTR 20.0%
!!! TTTGAATCATATGTTATTTC+AGG + chr5_4:8698373-8698392 Msa0835370:intron 20.0%
!!! TTAGTATTATTTTGTCATGA+TGG + chr5_4:8698497-8698516 Msa0835370:intron 20.0%
!!! TTAAGTTGTTTATTGAAACA+GGG - chr5_4:8698707-8698726 None:intergenic 20.0%
!!! ATTAAGTTGTTTATTGAAAC+AGG - chr5_4:8698708-8698727 None:intergenic 20.0%
!! TTATACATAAGCACTTATAT+TGG - chr5_4:8698740-8698759 None:intergenic 20.0%
!! TCAAATAATCAAATCTAAAC+AGG + chr5_4:8698899-8698918 Msa0835370:intron 20.0%
!! ATCTATAGTGAAAAAATTCT+TGG - chr5_4:8699290-8699309 None:intergenic 20.0%
!!! GTGTGAAAATTTAAAATAAG+AGG - chr5_4:8699374-8699393 None:intergenic 20.0%
!!! ATTTCATTCACTGTTTTTTA+CGG + chr5_4:8699488-8699507 Msa0835370:intron 20.0%
!! ATTAAATACAAAATTAAGGC+GGG - chr5_4:8699708-8699727 None:intergenic 20.0%
!!! CGTAAAATTTTATCTACATA+AGG + chr5_4:8699911-8699930 Msa0835370:CDS 20.0%
!! CACAAAGAATAGATTATTAT+TGG + chr5_4:8700770-8700789 Msa0835370:CDS 20.0%
!! AAACATGTTAAATACATGTA+TGG - chr5_4:8701283-8701302 None:intergenic 20.0%
!! CTGTTTAAAAACTAGTTATT+AGG + chr5_4:8702494-8702513 Msa0835370:three_prime_UTR 20.0%
! CACAAACATAAACATAAACA+AGG - chr5_4:8697154-8697173 None:intergenic 25.0%
! TTGATATCAAAGAAACACAA+AGG - chr5_4:8697226-8697245 None:intergenic 25.0%
!! AAACAATATCTGTGTTTTCT+AGG + chr5_4:8697257-8697276 Msa0835370:five_prime_UTR 25.0%
! ATGCTTTATGTCTACAAAAT+AGG + chr5_4:8697574-8697593 Msa0835370:intron 25.0%
!!! AAACAAAAGACAGCATTTTT+TGG - chr5_4:8697618-8697637 None:intergenic 25.0%
!!! CATAATTTTAATAGAGAGTG+GGG + chr5_4:8697812-8697831 Msa0835370:five_prime_UTR 25.0%
! AGATCAAAGTAGAAGATAAA+AGG - chr5_4:8698163-8698182 None:intergenic 25.0%
!! TTTTCTGTTTTATCCAAACT+TGG + chr5_4:8698202-8698221 Msa0835370:five_prime_UTR 25.0%
!!! TTTTGGAGCTTTTTTCTTTT+TGG + chr5_4:8698260-8698279 Msa0835370:five_prime_UTR 25.0%
! AAGATGAAGTTTATGAAACT+TGG + chr5_4:8698285-8698304 Msa0835370:exon 25.0%
!! AAAATGATGGAGATAATGTT+AGG + chr5_4:8698328-8698347 Msa0835370:CDS 25.0%
! GGAAATAAGAAAACAACTTA+TGG + chr5_4:8698848-8698867 Msa0835370:intron 25.0%
! AAGAAGATATATCTGAACTA+TGG - chr5_4:8698996-8699015 None:intergenic 25.0%
! GATAAATCTGAAAAGAAAGA+TGG - chr5_4:8699247-8699266 None:intergenic 25.0%
!! GGAAAGGAAAATTATTTTCA+AGG - chr5_4:8699269-8699288 None:intergenic 25.0%
! TAGTGAAAAAATTCTTGGAA+AGG - chr5_4:8699285-8699304 None:intergenic 25.0%
! TAGTACATAACACATATTGA+TGG - chr5_4:8699460-8699479 None:intergenic 25.0%
! ATTGTTCGTAAATATGCAAA+AGG - chr5_4:8699601-8699620 None:intergenic 25.0%
! CATTCAAAATTAATGTGAAG+TGG + chr5_4:8699825-8699844 Msa0835370:intron 25.0%
!! ATTACAAAAGGTGTATTCTT+TGG - chr5_4:8699970-8699989 None:intergenic 25.0%
! TTATTATTGGAGACTATTGT+CGG + chr5_4:8700783-8700802 Msa0835370:CDS 25.0%
! AACCTTTAAATACATGTCAA+TGG - chr5_4:8701249-8701268 None:intergenic 25.0%
! TGATTATAGTACAACAAAAC+CGG - chr5_4:8702179-8702198 None:intergenic 25.0%
!!! TAACTAATTTTGACCTATGA+TGG + chr5_4:8702406-8702425 Msa0835370:three_prime_UTR 25.0%
!!! TCTATTTTTACAACCATCAT+AGG - chr5_4:8702422-8702441 None:intergenic 25.0%
! ATTGTTGCAATTTATTTGCA+GGG + chr5_4:8702443-8702462 Msa0835370:three_prime_UTR 25.0%
AAAGGGAAAAAGGAAAAGTT+AGG + chr5_4:8696929-8696948 Msa0835370:five_prime_UTR 30.0%
AAGGGAAAAAGGAAAAGTTA+GGG + chr5_4:8696930-8696949 Msa0835370:five_prime_UTR 30.0%
AAACTACATGAACCAATCAA+AGG - chr5_4:8697128-8697147 None:intergenic 30.0%
TGAGTATGAGAAAAAAGAAG+AGG - chr5_4:8697193-8697212 None:intergenic 30.0%
! AAGAAACACAAAGGTTTGTT+TGG - chr5_4:8697217-8697236 None:intergenic 30.0%
!! CAGATATTGTTTCAGGTTTA+TGG - chr5_4:8697249-8697268 None:intergenic 30.0%
GAAAACACAGATATTGTTTC+AGG - chr5_4:8697256-8697275 None:intergenic 30.0%
! TCACAAGTTGGAATAATGAT+GGG - chr5_4:8697416-8697435 None:intergenic 30.0%
!!! ACATAAAGCATCGTTTTTTG+TGG - chr5_4:8697565-8697584 None:intergenic 30.0%
CTTTATGTCTACAAAATAGG+TGG + chr5_4:8697577-8697596 Msa0835370:intron 30.0%
!!! AAATGCTGTCTTTTGTTTTC+AGG + chr5_4:8697620-8697639 Msa0835370:intron 30.0%
TGAATGTTGAGTATGGAATT+TGG + chr5_4:8697679-8697698 Msa0835370:five_prime_UTR 30.0%
!!! GTGTTTTGTTTGTTACTTTG+TGG + chr5_4:8697735-8697754 Msa0835370:five_prime_UTR 30.0%
!! TTTGTTGTTGTTTCCAACAA+TGG - chr5_4:8697770-8697789 None:intergenic 30.0%
!!! TTGGAGATAGTTTGTTTTGT+TGG + chr5_4:8697934-8697953 Msa0835370:five_prime_UTR 30.0%
! GAACATGTTGCTTACTAAAA+TGG - chr5_4:8698010-8698029 None:intergenic 30.0%
! AAATTTCATCTAACTAGCCT+TGG + chr5_4:8698091-8698110 Msa0835370:five_prime_UTR 30.0%
! GGTGATTTGAAAAGCTATTT+TGG + chr5_4:8698243-8698262 Msa0835370:five_prime_UTR 30.0%
!! CCATCATTTTGAAAAGAATC+AGG - chr5_4:8698318-8698337 None:intergenic 30.0%
! CCTGATTCTTTTCAAAATGA+TGG + chr5_4:8698315-8698334 Msa0835370:CDS 30.0%
AACATATGATTCAAAGCAAG+AGG - chr5_4:8698368-8698387 None:intergenic 30.0%
AAACATAAGAAACCAACCAA+TGG - chr5_4:8698439-8698458 None:intergenic 30.0%
TATATGCTGAGGAACTAATT+AGG - chr5_4:8698588-8698607 None:intergenic 30.0%
TAGCATTATCATATATGCTG+AGG - chr5_4:8698599-8698618 None:intergenic 30.0%
ACATAAGCACTTATATTGGA+AGG - chr5_4:8698736-8698755 None:intergenic 30.0%
ATTACGTAATCCTCAATTTG+AGG - chr5_4:8698926-8698945 None:intergenic 30.0%
TATCCTTGACTGATAAAGAA+TGG - chr5_4:8698961-8698980 None:intergenic 30.0%
TATATCTGAACTATGGAGAT+GGG - chr5_4:8698989-8699008 None:intergenic 30.0%
ATATATCTGAACTATGGAGA+TGG - chr5_4:8698990-8699009 None:intergenic 30.0%
GTGAGATAGAAATGTATCAT+TGG - chr5_4:8699026-8699045 None:intergenic 30.0%
! TGTTAACTTTTGCTTCTTTC+TGG - chr5_4:8699100-8699119 None:intergenic 30.0%
! TTTAAATTTTCACACGACAG+TGG + chr5_4:8699379-8699398 Msa0835370:intron 30.0%
GTATGCTTTCATGTAAGATT+TGG + chr5_4:8699403-8699422 Msa0835370:intron 30.0%
! ACAAGCAATAGTATGTTTTC+TGG - chr5_4:8699740-8699759 None:intergenic 30.0%
CATATATTTGTTCAGGTATG+TGG + chr5_4:8699848-8699867 Msa0835370:intron 30.0%
ATGTGGTTTGATTATCCTTT+AGG + chr5_4:8700040-8700059 Msa0835370:intron 30.0%
ATATGTGCAAAGTTCTGTTA+TGG + chr5_4:8700213-8700232 Msa0835370:CDS 30.0%
AAGTATTTGATACCATCTTG+GGG - chr5_4:8701082-8701101 None:intergenic 30.0%
! GAAGTATTTGATACCATCTT+GGG - chr5_4:8701083-8701102 None:intergenic 30.0%
AAATACTTCGAGCAAGATAA+AGG + chr5_4:8701094-8701113 Msa0835370:CDS 30.0%
TGCCATTGACATGTATTTAA+AGG + chr5_4:8701244-8701263 Msa0835370:CDS 30.0%
CATGTTAAATACATGTATGG+TGG - chr5_4:8701280-8701299 None:intergenic 30.0%
! GAAAAGAATATGTAGGTTGA+TGG + chr5_4:8701403-8701422 Msa0835370:CDS 30.0%
!! AAGACGTAAAAGTTCTGAAA+GGG + chr5_4:8701672-8701691 Msa0835370:CDS 30.0%
AGAATAACTTCTTGGACATA+AGG - chr5_4:8701820-8701839 None:intergenic 30.0%
AAGCTTAGAGAATAACTTCT+TGG - chr5_4:8701828-8701847 None:intergenic 30.0%
AGAAGTTATTCTCTAAGCTT+TGG + chr5_4:8701828-8701847 Msa0835370:CDS 30.0%
GATTATAGTACAACAAAACC+GGG - chr5_4:8702178-8702197 None:intergenic 30.0%
TGTTGTACTATAATCAGAGA+AGG + chr5_4:8702183-8702202 Msa0835370:three_prime_UTR 30.0%
ACTAACTAGAATCAAATGCT+AGG + chr5_4:8702302-8702321 Msa0835370:three_prime_UTR 30.0%
AAACCAATACAAACTACACT+AGG - chr5_4:8702336-8702355 None:intergenic 30.0%
CATTGTTGCAATTTATTTGC+AGG + chr5_4:8702442-8702461 Msa0835370:three_prime_UTR 30.0%
AGGGAAAAAGGAAAAGTTAG+GGG + chr5_4:8696931-8696950 Msa0835370:five_prime_UTR 35.0%
! CATAAGTTGAGAGAGAAAGT+GGG + chr5_4:8696994-8697013 Msa0835370:five_prime_UTR 35.0%
!! AAGTGGGAACATTCTGAAAT+TGG + chr5_4:8697010-8697029 Msa0835370:five_prime_UTR 35.0%
CAAAAGATGAGGCTTGAAAA+AGG - chr5_4:8697100-8697119 None:intergenic 35.0%
! TCTTTTGCCATTCCTTTGAT+TGG + chr5_4:8697113-8697132 Msa0835370:five_prime_UTR 35.0%
ACATGAACCAATCAAAGGAA+TGG - chr5_4:8697123-8697142 None:intergenic 35.0%
! GTCACAAGTTGGAATAATGA+TGG - chr5_4:8697417-8697436 None:intergenic 35.0%
TATTCCAACTTGTGACCAAT+TGG + chr5_4:8697421-8697440 Msa0835370:intron 35.0%
ATTCCAACTTGTGACCAATT+GGG + chr5_4:8697422-8697441 Msa0835370:intron 35.0%
!! TGTTTTCAGGAGTTCAAAGA+AGG + chr5_4:8697633-8697652 Msa0835370:intron 35.0%
!! GTTTTCAGGAGTTCAAAGAA+GGG + chr5_4:8697634-8697653 Msa0835370:intron 35.0%
TAGTGTGTGAATGTTGAGTA+TGG + chr5_4:8697672-8697691 Msa0835370:five_prime_UTR 35.0%
!! AATTTTAATAGAGAGTGGGG+CGG + chr5_4:8697815-8697834 Msa0835370:five_prime_UTR 35.0%
ATGAATGTGTTTGTGTGTGT+TGG + chr5_4:8697915-8697934 Msa0835370:five_prime_UTR 35.0%
TCTCCTAACATGGTTTATCT+TGG + chr5_4:8697962-8697981 Msa0835370:five_prime_UTR 35.0%
CACAAACTCTTAACCAAGTT+TGG - chr5_4:8698218-8698237 None:intergenic 35.0%
CAAACTTGGTTAAGAGTTTG+TGG + chr5_4:8698216-8698235 Msa0835370:five_prime_UTR 35.0%
TGATTTCCTTCCAAATCCAT+TGG + chr5_4:8698420-8698439 Msa0835370:intron 35.0%
! AAGAAACCAACCAATGGATT+TGG - chr5_4:8698433-8698452 None:intergenic 35.0%
GTTCCATTCTTTATCAGTCA+AGG + chr5_4:8698955-8698974 Msa0835370:intron 35.0%
!! AACTTTTGCTTCTTTCTGGT+TGG - chr5_4:8699096-8699115 None:intergenic 35.0%
GCAAAAGTTAACATTGTCAC+AGG + chr5_4:8699107-8699126 Msa0835370:intron 35.0%
AAGAAAGATGGAACACTATG+TGG - chr5_4:8699235-8699254 None:intergenic 35.0%
TCCAAAATCAAACTAGTTGG+TGG + chr5_4:8699512-8699531 Msa0835370:intron 35.0%
!! ACCACCAACTAGTTTGATTT+TGG - chr5_4:8699516-8699535 None:intergenic 35.0%
CACAAAACCAAATATGGCTA+TGG - chr5_4:8699571-8699590 None:intergenic 35.0%
CAAATATGCGTTTCAGCAAT+TGG + chr5_4:8699654-8699673 Msa0835370:intron 35.0%
ATTGCTTGTCATACTGTAGT+AGG + chr5_4:8699751-8699770 Msa0835370:intron 35.0%
GAAGTGGCATATATTTGTTC+AGG + chr5_4:8699841-8699860 Msa0835370:intron 35.0%
TCTGACATAGTCGTTAATGT+TGG + chr5_4:8699885-8699904 Msa0835370:CDS 35.0%
CTGACATAGTCGTTAATGTT+GGG + chr5_4:8699886-8699905 Msa0835370:CDS 35.0%
TGACATAGTCGTTAATGTTG+GGG + chr5_4:8699887-8699906 Msa0835370:CDS 35.0%
AGCAGATATTGATCAGGTAA+AGG - chr5_4:8700078-8700097 None:intergenic 35.0%
! CGTAAACTTTTGGACAAAAG+TGG - chr5_4:8700108-8700127 None:intergenic 35.0%
! CTTTTGCAAGCGTAAACTTT+TGG - chr5_4:8700118-8700137 None:intergenic 35.0%
! GTTAGTTTCAAACACAGATG+AGG + chr5_4:8700137-8700156 Msa0835370:CDS 35.0%
GCACATATTTCAAAAGCAAC+AGG - chr5_4:8700201-8700220 None:intergenic 35.0%
TGCAAAGTTCTGTTATGGTA+TGG + chr5_4:8700218-8700237 Msa0835370:CDS 35.0%
ATGTACGAGACCATTGAAAA+GGG + chr5_4:8700300-8700319 Msa0835370:CDS 35.0%
! GATGAGATTTCCCTTTTCAA+TGG - chr5_4:8700313-8700332 None:intergenic 35.0%
AGTGGTCATACACATATAAC+AGG + chr5_4:8700502-8700521 Msa0835370:CDS 35.0%
GAAACAACTAATGGTTCCAA+AGG + chr5_4:8700575-8700594 Msa0835370:CDS 35.0%
AACTAATGGTTCCAAAGGAT+TGG + chr5_4:8700580-8700599 Msa0835370:CDS 35.0%
! CATTGGTTGTAATAGTTGAC+AGG - chr5_4:8700653-8700672 None:intergenic 35.0%
CTGTCAACTATTACAACCAA+TGG + chr5_4:8700651-8700670 Msa0835370:CDS 35.0%
ACAACCAATGGAAATGTTTC+CGG + chr5_4:8700663-8700682 Msa0835370:CDS 35.0%
ATAACACCCTTATTGAAACC+AGG - chr5_4:8700735-8700754 None:intergenic 35.0%
ATTGAAAGTGGCTATTCAAC+TGG + chr5_4:8700857-8700876 Msa0835370:CDS 35.0%
! CGAAGTATTTGATACCATCT+TGG - chr5_4:8701084-8701103 None:intergenic 35.0%
ATGTTCACAAAACTGAGAAG+AGG - chr5_4:8701173-8701192 None:intergenic 35.0%
AGGAAAGCTTGATACCAAAT+CGG - chr5_4:8701198-8701217 None:intergenic 35.0%
ACTTCAACCGAACTGAATTT+CGG + chr5_4:8701326-8701345 Msa0835370:intron 35.0%
CTCACACTATTATGTTATGC+AGG + chr5_4:8701352-8701371 Msa0835370:intron 35.0%
GTGAGAGGAAAAGAATATGT+AGG + chr5_4:8701396-8701415 Msa0835370:CDS 35.0%
!! GAAGACGTAAAAGTTCTGAA+AGG + chr5_4:8701671-8701690 Msa0835370:CDS 35.0%
!! AGACGTAAAAGTTCTGAAAG+GGG + chr5_4:8701673-8701692 Msa0835370:CDS 35.0%
!!! TCCACTTGATAGTTTTAGTG+CGG - chr5_4:8701705-8701724 None:intergenic 35.0%
AGAAACAGCAACAACAATGA+CGG + chr5_4:8701743-8701762 Msa0835370:CDS 35.0%
GTAGCTGCTAACAAAATGAA+AGG + chr5_4:8701791-8701810 Msa0835370:CDS 35.0%
TGGTCGAGCAAAGAAAAAAA+CGG + chr5_4:8701848-8701867 Msa0835370:CDS 35.0%
ACGATTATACAACGATGCAA+CGG - chr5_4:8702007-8702026 None:intergenic 35.0%
TGTATAATCGTCGATCACTT+TGG + chr5_4:8702016-8702035 Msa0835370:three_prime_UTR 35.0%
! TTGCCTAGTGTAGTTTGTAT+TGG + chr5_4:8702330-8702349 Msa0835370:three_prime_UTR 35.0%
GGGAAAAAGGAAAAGTTAGG+GGG + chr5_4:8696932-8696951 Msa0835370:five_prime_UTR 40.0%
AAAAAGGAAAAGTTAGGGGG+TGG + chr5_4:8696935-8696954 Msa0835370:five_prime_UTR 40.0%
CCACTTTCTCTCTCAACTTA+TGG - chr5_4:8696996-8697015 None:intergenic 40.0%
! CCATAAGTTGAGAGAGAAAG+TGG + chr5_4:8696993-8697012 Msa0835370:five_prime_UTR 40.0%
!! GGGAACATTCTGAAATTGGT+TGG + chr5_4:8697014-8697033 Msa0835370:five_prime_UTR 40.0%
CAAAGGAATGGCAAAAGATG+AGG - chr5_4:8697111-8697130 None:intergenic 40.0%
TGCATTGAAACCAACCCAAT+TGG - chr5_4:8697439-8697458 None:intergenic 40.0%
GACACGTTATACACTACCAT+TGG - chr5_4:8697526-8697545 None:intergenic 40.0%
CAAAACACACACACACTTTC+TGG - chr5_4:8697723-8697742 None:intergenic 40.0%
GTGGTGTCTAAATCCATTGT+TGG + chr5_4:8697754-8697773 Msa0835370:five_prime_UTR 40.0%
! TGGTGTCAGATAGAACTAGT+GGG + chr5_4:8697838-8697857 Msa0835370:five_prime_UTR 40.0%
!! GTTGGTAATGTCTCCTAACA+TGG + chr5_4:8697952-8697971 Msa0835370:five_prime_UTR 40.0%
CTAACATGGTTTATCTTGGC+CGG + chr5_4:8697966-8697985 Msa0835370:five_prime_UTR 40.0%
GTAACAAAGTCCAAAGAGAC+CGG - chr5_4:8697988-8698007 None:intergenic 40.0%
!! ATCTAACTAGCCTTGGTTTG+TGG + chr5_4:8698098-8698117 Msa0835370:five_prime_UTR 40.0%
!! TCTAACTAGCCTTGGTTTGT+GGG + chr5_4:8698099-8698118 Msa0835370:five_prime_UTR 40.0%
!! CTTGGTTTGTGGGAAAGATT+CGG + chr5_4:8698109-8698128 Msa0835370:five_prime_UTR 40.0%
TGGTTAAGAGTTTGTGGAGT+AGG + chr5_4:8698222-8698241 Msa0835370:five_prime_UTR 40.0%
TTCCTTCCAAATCCATTGGT+TGG + chr5_4:8698424-8698443 Msa0835370:intron 40.0%
! AACCAACCAATGGATTTGGA+AGG - chr5_4:8698429-8698448 None:intergenic 40.0%
ACTGCTTTCATAAGCAATCC+TGG + chr5_4:8698816-8698835 Msa0835370:intron 40.0%
CTAAACAGGTCCTCAAATTG+AGG + chr5_4:8698913-8698932 Msa0835370:intron 40.0%
TGTTGGAGTTAAGGGAGAAT+AGG - chr5_4:8699051-8699070 None:intergenic 40.0%
GAAGCTCTTGTTGGAGTTAA+GGG - chr5_4:8699059-8699078 None:intergenic 40.0%
AGTTGCATCTCTGACAAGTT+CGG + chr5_4:8699134-8699153 Msa0835370:intron 40.0%
TGTAGATGCTGAGTTACAGT+TGG + chr5_4:8699201-8699220 Msa0835370:intron 40.0%
GGCTCCAAAATCAAACTAGT+TGG + chr5_4:8699509-8699528 Msa0835370:intron 40.0%
!! ACACTCTGAAGTTTGGTTCA+GGG - chr5_4:8699546-8699565 None:intergenic 40.0%
!! TATGGTCACACTCTGAAGTT+TGG - chr5_4:8699553-8699572 None:intergenic 40.0%
AGTGTGACCATAGCCATATT+TGG + chr5_4:8699561-8699580 Msa0835370:intron 40.0%
GCAGGACACAAAACCAAATA+TGG - chr5_4:8699577-8699596 None:intergenic 40.0%
! CGTAAATATGCAAAAGGTGC+AGG - chr5_4:8699595-8699614 None:intergenic 40.0%
GCTCGCTACATAAGTTTATG+TGG + chr5_4:8700023-8700042 Msa0835370:intron 40.0%
AGGTTCAATAAGCAGCCTAA+AGG - chr5_4:8700058-8700077 None:intergenic 40.0%
AACTGCAGCAGATATTGATC+AGG - chr5_4:8700084-8700103 None:intergenic 40.0%
GATGTACGAGACCATTGAAA+AGG + chr5_4:8700299-8700318 Msa0835370:CDS 40.0%
CAACCAAATCACTTCTTCCA+TGG + chr5_4:8700403-8700422 Msa0835370:CDS 40.0%
CAAATCACTTCTTCCATGGT+CGG + chr5_4:8700407-8700426 Msa0835370:CDS 40.0%
TAGCTATGGACTCGATACAA+TGG - chr5_4:8700452-8700471 None:intergenic 40.0%
TAACAGGAAAAAGCTCCCAT+CGG + chr5_4:8700518-8700537 Msa0835370:CDS 40.0%
AAAAAGCTCCCATCGGAAAA+TGG + chr5_4:8700525-8700544 Msa0835370:CDS 40.0%
AAAAGCTCCCATCGGAAAAT+GGG + chr5_4:8700526-8700545 Msa0835370:CDS 40.0%
TAATGGTTCCAAAGGATTGG+TGG + chr5_4:8700583-8700602 Msa0835370:CDS 40.0%
! AATGGTTCCAAAGGATTGGT+GGG + chr5_4:8700584-8700603 Msa0835370:CDS 40.0%
CTCGCTTATAGAGATCAAGT+TGG - chr5_4:8700629-8700648 None:intergenic 40.0%
CAACCAATGGAAATGTTTCC+GGG + chr5_4:8700664-8700683 Msa0835370:CDS 40.0%
AACCAATGGAAATGTTTCCG+GGG + chr5_4:8700665-8700684 Msa0835370:CDS 40.0%
AAGGTTGCCTGGTTTCAATA+AGG + chr5_4:8700725-8700744 Msa0835370:CDS 40.0%
AGGTTGCCTGGTTTCAATAA+GGG + chr5_4:8700726-8700745 Msa0835370:CDS 40.0%
!! AATAAGGGTGTTATCCAGAG+TGG + chr5_4:8700741-8700760 Msa0835370:CDS 40.0%
TCTTTGTGATATCACCACTC+TGG - chr5_4:8700758-8700777 None:intergenic 40.0%
!! GACTATTGTCGGTTTATTGC+CGG + chr5_4:8700794-8700813 Msa0835370:CDS 40.0%
GGTTTATTGCCGGTAGATAT+GGG + chr5_4:8700804-8700823 Msa0835370:CDS 40.0%
CTCGCTGAAGTTATTGAAAG+TGG + chr5_4:8700845-8700864 Msa0835370:CDS 40.0%
TCAACTGGATTGTGAAGTGT+CGG + chr5_4:8700872-8700891 Msa0835370:CDS 40.0%
AAACTGAGAAGAGGCAGATT+AGG - chr5_4:8701164-8701183 None:intergenic 40.0%
!! TTTTGTGAACATCGCCGATT+TGG + chr5_4:8701181-8701200 Msa0835370:CDS 40.0%
TTTCCTAGACAGTCTCATGA+CGG + chr5_4:8701212-8701231 Msa0835370:CDS 40.0%
TTCAGTTCGGTTGAAGTCAT+TGG - chr5_4:8701323-8701342 None:intergenic 40.0%
TGAGTCTCCGAAATTCAGTT+CGG - chr5_4:8701336-8701355 None:intergenic 40.0%
TATGTTATGCAGGAACATCC+TGG + chr5_4:8701362-8701381 Msa0835370:intron 40.0%
GCTTCAACAACATCATCATC+AGG + chr5_4:8701527-8701546 Msa0835370:CDS 40.0%
TCAACAACATCATCATCAGG+AGG + chr5_4:8701530-8701549 Msa0835370:CDS 40.0%
GCACTAAAACTATCAAGTGG+AGG + chr5_4:8701704-8701723 Msa0835370:CDS 40.0%
AATCTACGCCATCTAGAAGT+AGG + chr5_4:8701930-8701949 Msa0835370:CDS 40.0%
GAATGTCTCCTACTTCTAGA+TGG - chr5_4:8701941-8701960 None:intergenic 40.0%
! TCGATCACTTTGGTAGCATT+AGG + chr5_4:8702026-8702045 Msa0835370:three_prime_UTR 40.0%
TGAGGTATGATGGTTGTTTG+TGG + chr5_4:8702096-8702115 Msa0835370:three_prime_UTR 40.0%
CACTTAAGATGAGCCTATGA+GGG + chr5_4:8702151-8702170 Msa0835370:three_prime_UTR 40.0%
!! TTGCACACCACTGTTTTGTT+AGG + chr5_4:8702369-8702388 Msa0835370:three_prime_UTR 40.0%
CGCTTAACCTAACAAAACAG+TGG - chr5_4:8702379-8702398 None:intergenic 40.0%
TGTGTTTGTGTAGCTAGCTG+TGG + chr5_4:8697042-8697061 Msa0835370:five_prime_UTR 45.0%
GTGGCTGTCATCAAAAGATG+AGG + chr5_4:8697064-8697083 Msa0835370:five_prime_UTR 45.0%
CAACCCAATTGGTCACAAGT+TGG - chr5_4:8697428-8697447 None:intergenic 45.0%
CAACTTGTGACCAATTGGGT+TGG + chr5_4:8697426-8697445 Msa0835370:intron 45.0%
AGGAGTTCAAAGAAGGGACA+TGG + chr5_4:8697640-8697659 Msa0835370:intron 45.0%
! GTGGTGTCAGATAGAACTAG+TGG + chr5_4:8697837-8697856 Msa0835370:five_prime_UTR 45.0%
GGTGTCAGATAGAACTAGTG+GGG + chr5_4:8697839-8697858 Msa0835370:five_prime_UTR 45.0%
GTGTCAGATAGAACTAGTGG+GGG + chr5_4:8697840-8697859 Msa0835370:five_prime_UTR 45.0%
CGGCCAAGATAAACCATGTT+AGG - chr5_4:8697968-8697987 None:intergenic 45.0%
TTTATCTTGGCCGGTCTCTT+TGG + chr5_4:8697975-8697994 Msa0835370:five_prime_UTR 45.0%
CGAATCTTTCCCACAAACCA+AGG - chr5_4:8698111-8698130 None:intergenic 45.0%
! GGGAAAGATTCGGTCATACA+AGG + chr5_4:8698119-8698138 Msa0835370:five_prime_UTR 45.0%
CTTATTTCCAGAAGCTCTCC+AGG - chr5_4:8698837-8698856 None:intergenic 45.0%
GGAAGCTCTTGTTGGAGTTA+AGG - chr5_4:8699060-8699079 None:intergenic 45.0%
AGTGAGATGGAAGCTCTTGT+TGG - chr5_4:8699068-8699087 None:intergenic 45.0%
ACAAGAGCTTCCATCTCACT+AGG + chr5_4:8699068-8699087 Msa0835370:intron 45.0%
CAAGAGCTTCCATCTCACTA+GGG + chr5_4:8699069-8699088 Msa0835370:intron 45.0%
!! CACACTCTGAAGTTTGGTTC+AGG - chr5_4:8699547-8699566 None:intergenic 45.0%
ATTCACATCCACGACATTCC+TGG + chr5_4:8700171-8700190 Msa0835370:CDS 45.0%
! TCCTCAACTCCAGCATTTTC+AGG + chr5_4:8700349-8700368 Msa0835370:CDS 45.0%
TCCTGAAAATGCTGGAGTTG+AGG - chr5_4:8700353-8700372 None:intergenic 45.0%
TTTCCAGCTCCTGAAAATGC+TGG - chr5_4:8700361-8700380 None:intergenic 45.0%
CGACCATGGAAGAAGTGATT+TGG - chr5_4:8700409-8700428 None:intergenic 45.0%
ATCTTAAGTTCCTCCGACCA+TGG - chr5_4:8700423-8700442 None:intergenic 45.0%
TATCGAGTCCATAGCTACCA+AGG + chr5_4:8700455-8700474 Msa0835370:CDS 45.0%
! CTTCGTTCCCATTTTCCGAT+GGG - chr5_4:8700536-8700555 None:intergenic 45.0%
AAAATGGGAACGAAGCACAC+TGG + chr5_4:8700541-8700560 Msa0835370:CDS 45.0%
CGGTGTGAGGAAACAACTAA+TGG + chr5_4:8700566-8700585 Msa0835370:CDS 45.0%
TAAGTGCGTACACCTCTAGA+AGG + chr5_4:8700706-8700725 Msa0835370:CDS 45.0%
CGGTTTATTGCCGGTAGATA+TGG + chr5_4:8700803-8700822 Msa0835370:CDS 45.0%
!!! CTTTTGATTTGTGCGTCAGC+TGG + chr5_4:8700954-8700973 Msa0835370:CDS 45.0%
ACACGAGCATCAATCTTCGA+TGG + chr5_4:8701031-8701050 Msa0835370:CDS 45.0%
TTCGATGGAAGACGAATTGC+AGG + chr5_4:8701046-8701065 Msa0835370:CDS 45.0%
!!! CTCTCACTTTTGCTGATTCC+AGG - chr5_4:8701383-8701402 None:intergenic 45.0%
CTGGAATCAGCAAAAGTGAG+AGG + chr5_4:8701381-8701400 Msa0835370:CDS 45.0%
!! TATGTAGGTTGATGGACTGC+AGG + chr5_4:8701411-8701430 Msa0835370:CDS 45.0%
! TCCTTTACGTGTCGTTGTAC+AGG + chr5_4:8701481-8701500 Msa0835370:CDS 45.0%
ACCTGTACAACGACACGTAA+AGG - chr5_4:8701485-8701504 None:intergenic 45.0%
GACCAACACAGAAGAGGAAT+GGG + chr5_4:8701631-8701650 Msa0835370:CDS 45.0%
ATCCCATTCCTCTTCTGTGT+TGG - chr5_4:8701636-8701655 None:intergenic 45.0%
GCCGCACTAAAACTATCAAG+TGG + chr5_4:8701701-8701720 Msa0835370:CDS 45.0%
!! TGCTGTTTCTGTCACTACTC+TGG - chr5_4:8701733-8701752 None:intergenic 45.0%
AACAGCAACAACAATGACGG+TGG + chr5_4:8701746-8701765 Msa0835370:CDS 45.0%
! AACAATGACGGTGGTGGTAT+AGG + chr5_4:8701755-8701774 Msa0835370:CDS 45.0%
AACAGTAGAAGCAGGGCTTT+CGG - chr5_4:8701897-8701916 None:intergenic 45.0%
CCTCAACAACAGTAGAAGCA+GGG - chr5_4:8701904-8701923 None:intergenic 45.0%
TCCTCAACAACAGTAGAAGC+AGG - chr5_4:8701905-8701924 None:intergenic 45.0%
CCTCATAGGCTCATCTTAAG+TGG - chr5_4:8702153-8702172 None:intergenic 45.0%
CCACTTAAGATGAGCCTATG+AGG + chr5_4:8702150-8702169 Msa0835370:three_prime_UTR 45.0%
AAGGAAAAGTTAGGGGGTGG+TGG + chr5_4:8696938-8696957 Msa0835370:five_prime_UTR 50.0%
AGGAAAAGTTAGGGGGTGGT+GGG + chr5_4:8696939-8696958 Msa0835370:five_prime_UTR 50.0%
GTTTGTGTAGCTAGCTGTGG+TGG + chr5_4:8697045-8697064 Msa0835370:five_prime_UTR 50.0%
TTTAATAGAGAGTGGGGCGG+TGG + chr5_4:8697818-8697837 Msa0835370:five_prime_UTR 50.0%
AAGCAATCCTGGAGAGCTTC+TGG + chr5_4:8698827-8698846 Msa0835370:intron 50.0%
TCAAAAGCAACAGGTCCTCC+AGG - chr5_4:8700192-8700211 None:intergenic 50.0%
!! ACTCCAGCATTTTCAGGAGC+TGG + chr5_4:8700355-8700374 Msa0835370:CDS 50.0%
ATCACTTCTTCCATGGTCGG+AGG + chr5_4:8700410-8700429 Msa0835370:CDS 50.0%
! CATCGAAGCCTTGGTAGCTA+TGG - chr5_4:8700466-8700485 None:intergenic 50.0%
CATAGCTACCAAGGCTTCGA+TGG + chr5_4:8700464-8700483 Msa0835370:CDS 50.0%
TTCGATGGATCCATCCAAGG+TGG + chr5_4:8700479-8700498 Msa0835370:CDS 50.0%
TATGACCACTCCACCTTGGA+TGG - chr5_4:8700492-8700511 None:intergenic 50.0%
TGTGTATGACCACTCCACCT+TGG - chr5_4:8700496-8700515 None:intergenic 50.0%
! GCTTCGTTCCCATTTTCCGA+TGG - chr5_4:8700537-8700556 None:intergenic 50.0%
TCTTCCACCCACCAATCCTT+TGG - chr5_4:8700594-8700613 None:intergenic 50.0%
TGCCCCGGAAACATTTCCAT+TGG - chr5_4:8700670-8700689 None:intergenic 50.0%
AATGTTTCCGGGGCAGTTGT+CGG + chr5_4:8700675-8700694 Msa0835370:CDS 50.0%
! TACACCTCTAGAAGGTTGCC+TGG + chr5_4:8700714-8700733 Msa0835370:CDS 50.0%
GAAACCAGGCAACCTTCTAG+AGG - chr5_4:8700721-8700740 None:intergenic 50.0%
TTGCCGGTAGATATGGGAAG+TGG + chr5_4:8700810-8700829 Msa0835370:CDS 50.0%
GAGCCACTTCCCATATCTAC+CGG - chr5_4:8700816-8700835 None:intergenic 50.0%
GATATGGGAAGTGGCTCATG+CGG + chr5_4:8700819-8700838 Msa0835370:CDS 50.0%
TGAGATCCGAACTGATGCAG+AGG + chr5_4:8700895-8700914 Msa0835370:CDS 50.0%
TCCGAACTGATGCAGAGGAT+AGG + chr5_4:8700900-8700919 Msa0835370:CDS 50.0%
GCCTATCCTCTGCATCAGTT+CGG - chr5_4:8700904-8700923 None:intergenic 50.0%
GATCACGTGCAATCTCAGCA+AGG - chr5_4:8701142-8701161 None:intergenic 50.0%
AGACCGTCATGAGACTGTCT+AGG - chr5_4:8701218-8701237 None:intergenic 50.0%
TGCATGCAGTGCAGAATGAG+CGG + chr5_4:8701456-8701475 Msa0835370:CDS 50.0%
TGATCTTCCCGGTTCCATCA+GGG + chr5_4:8701565-8701584 Msa0835370:CDS 50.0%
ATGCAATGCCCTGATGGAAC+CGG - chr5_4:8701576-8701595 None:intergenic 50.0%
TGAACTACCGTGAGAACCAC+CGG - chr5_4:8701600-8701619 None:intergenic 50.0%
GTGGTTCTCACGGTAGTTCA+AGG + chr5_4:8701600-8701619 Msa0835370:CDS 50.0%
TACCACGACCAACACAGAAG+AGG + chr5_4:8701625-8701644 Msa0835370:CDS 50.0%
! TTCCTCTTCTGTGTTGGTCG+TGG - chr5_4:8701630-8701649 None:intergenic 50.0%
CGACCAACACAGAAGAGGAA+TGG + chr5_4:8701630-8701649 Msa0835370:CDS 50.0%
AGAAGAGGAATGGGATGCTG+TGG + chr5_4:8701640-8701659 Msa0835370:CDS 50.0%
AGCAACAACAATGACGGTGG+TGG + chr5_4:8701749-8701768 Msa0835370:CDS 50.0%
CCCTGCTTCTACTGTTGTTG+AGG + chr5_4:8701901-8701920 Msa0835370:CDS 50.0%
! CTTCTAGCTGAGACTGACTG+TGG + chr5_4:8702071-8702090 Msa0835370:three_prime_UTR 50.0%
GACTGTGGCTTGAGGTATGA+TGG + chr5_4:8702086-8702105 Msa0835370:three_prime_UTR 50.0%
AACAAAACCGGGTCCCTCAT+AGG - chr5_4:8702167-8702186 None:intergenic 50.0%
GGAAAAGTTAGGGGGTGGTG+GGG + chr5_4:8696940-8696959 Msa0835370:five_prime_UTR 55.0%
! GAAAAGTTAGGGGGTGGTGG+GGG + chr5_4:8696941-8696960 Msa0835370:five_prime_UTR 55.0%
CTGGTTGGACCCTAGTGAGA+TGG - chr5_4:8699081-8699100 None:intergenic 55.0%
CAGGTATGTGGCAACTGAGC+TGG + chr5_4:8699860-8699879 Msa0835370:intron 55.0%
CACATCCACGACATTCCTGG+AGG + chr5_4:8700174-8700193 Msa0835370:CDS 55.0%
GGATGGATCCATCGAAGCCT+TGG - chr5_4:8700475-8700494 None:intergenic 55.0%
GGCTTCGATGGATCCATCCA+AGG + chr5_4:8700476-8700495 Msa0835370:CDS 55.0%
TGGATCCATCCAAGGTGGAG+TGG + chr5_4:8700484-8700503 Msa0835370:CDS 55.0%
GGGAACGAAGCACACTGGAA+CGG + chr5_4:8700546-8700565 Msa0835370:CDS 55.0%
AAGCACACTGGAACGGTGTG+AGG + chr5_4:8700553-8700572 Msa0835370:CDS 55.0%
! GGTTCCAAAGGATTGGTGGG+TGG + chr5_4:8700587-8700606 Msa0835370:CDS 55.0%
TGATGCAGAGGATAGGCCAG+AGG + chr5_4:8700907-8700926 Msa0835370:CDS 55.0%
GGAGATCAGAAGCCCCAAGA+TGG + chr5_4:8701067-8701086 Msa0835370:CDS 55.0%
ACGAGCACTCCTGATCTTCC+CGG + chr5_4:8701554-8701573 Msa0835370:CDS 55.0%
CTGATGGAACCGGGAAGATC+AGG - chr5_4:8701566-8701585 None:intergenic 55.0%
CTGATCTTCCCGGTTCCATC+AGG + chr5_4:8701564-8701583 Msa0835370:CDS 55.0%
TGCAATGCCCTGATGGAACC+GGG - chr5_4:8701575-8701594 None:intergenic 55.0%
!! TCCATCAGGGCATTGCATCC+CGG + chr5_4:8701578-8701597 Msa0835370:CDS 55.0%
TTGCATCCCGGTGGTTCTCA+CGG + chr5_4:8701590-8701609 Msa0835370:CDS 55.0%
GAACTACCGTGAGAACCACC+GGG - chr5_4:8701599-8701618 None:intergenic 55.0%
GCTTTCGGACGTATCAGAGC+TGG - chr5_4:8701882-8701901 None:intergenic 55.0%
CTGAGACTGACTGTGGCTTG+AGG + chr5_4:8702078-8702097 Msa0835370:three_prime_UTR 55.0%
AGATGAGCCTATGAGGGACC+CGG + chr5_4:8702157-8702176 Msa0835370:three_prime_UTR 55.0%
CAGGTCCTCCAGGAATGTCG+TGG - chr5_4:8700182-8700201 None:intergenic 60.0%
AGTTGCAGCTCGCTGTGCAG+CGG + chr5_4:8700266-8700285 Msa0835370:CDS 60.0%
AGCTTCTCCGACAACTGCCC+CGG - chr5_4:8700685-8700704 None:intergenic 60.0%
GAGGATAGGCCAGAGGCTTG+AGG + chr5_4:8700914-8700933 Msa0835370:CDS 60.0%
GATAGGCCAGAGGCTTGAGG+AGG + chr5_4:8700917-8700936 Msa0835370:CDS 60.0%
CCAGAGGCTTGAGGAGGCTA+CGG + chr5_4:8700923-8700942 Msa0835370:CDS 60.0%
ACCGGGATGCAATGCCCTGA+TGG - chr5_4:8701582-8701601 None:intergenic 60.0%
!! ATCAGGGCATTGCATCCCGG+TGG + chr5_4:8701581-8701600 Msa0835370:CDS 60.0%
CCGTAGCCTCCTCAAGCCTC+TGG - chr5_4:8700926-8700945 None:intergenic 65.0%
GAGGCTTGAGGAGGCTACGG+TGG + chr5_4:8700926-8700945 Msa0835370:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 8696926 8702532 8696926 ID=Msa0835370;Name=Msa0835370
chr5_4 mRNA 8696926 8702532 8696926 ID=Msa0835370-mRNA-1;Parent=Msa0835370;Name=Msa0835370-mRNA-1;_AED=0.02;_eAED=0.02;_QI=999|1|1|1|0.75|0.6|5|562|630
chr5_4 exon 8696926 8697278 8696926 ID=Msa0835370-mRNA-1:exon:3835;Parent=Msa0835370-mRNA-1
chr5_4 exon 8697642 8698349 8697642 ID=Msa0835370-mRNA-1:exon:3836;Parent=Msa0835370-mRNA-1
chr5_4 exon 8699863 8699932 8699863 ID=Msa0835370-mRNA-1:exon:3837;Parent=Msa0835370-mRNA-1
chr5_4 exon 8700102 8701265 8700102 ID=Msa0835370-mRNA-1:exon:3838;Parent=Msa0835370-mRNA-1
chr5_4 exon 8701374 8702532 8701374 ID=Msa0835370-mRNA-1:exon:3839;Parent=Msa0835370-mRNA-1
chr5_4 five_prime_UTR 8696926 8697278 8696926 ID=Msa0835370-mRNA-1:five_prime_utr;Parent=Msa0835370-mRNA-1
chr5_4 five_prime_UTR 8697642 8698287 8697642 ID=Msa0835370-mRNA-1:five_prime_utr;Parent=Msa0835370-mRNA-1
chr5_4 CDS 8698288 8698349 8698288 ID=Msa0835370-mRNA-1:cds;Parent=Msa0835370-mRNA-1
chr5_4 CDS 8699863 8699932 8699863 ID=Msa0835370-mRNA-1:cds;Parent=Msa0835370-mRNA-1
chr5_4 CDS 8700102 8701265 8700102 ID=Msa0835370-mRNA-1:cds;Parent=Msa0835370-mRNA-1
chr5_4 CDS 8701374 8701970 8701374 ID=Msa0835370-mRNA-1:cds;Parent=Msa0835370-mRNA-1
chr5_4 three_prime_UTR 8701971 8702532 8701971 ID=Msa0835370-mRNA-1:three_prime_utr;Parent=Msa0835370-mRNA-1
Gene Sequence

>Msa0835370

ATGAAGTTTATGAAACTTGGATCTAAGCCTGATTCTTTTCAAAATGATGGAGATAATGTTAGGTATGTGGCAACTGAGCTGGCATCTGACATAGTCGTTAATGTTGGGGACGTAAAATTTTATCTACATAAGTTTCCACTTTTGTCCAAAAGTTTACGCTTGCAAAAGTTAGTTTCAAACACAGATGAGGAGAATGACGAAATTCACATCCACGACATTCCTGGAGGACCTGTTGCTTTTGAAATATGTGCAAAGTTCTGTTATGGTATGGTTGTCACTCTAAATGCATACAATGTAGTTGCAGCTCGCTGTGCAGCGGAGTATCTTGAGATGTACGAGACCATTGAAAAGGGAAATCTCATCTACAAGATTGAAGTTTTCCTCAACTCCAGCATTTTCAGGAGCTGGAAAGATTCTATTATTGTTCTACAAACAACCAAATCACTTCTTCCATGGTCGGAGGAACTTAAGATCGTGAGCCATTGTATCGAGTCCATAGCTACCAAGGCTTCGATGGATCCATCCAAGGTGGAGTGGTCATACACATATAACAGGAAAAAGCTCCCATCGGAAAATGGGAACGAAGCACACTGGAACGGTGTGAGGAAACAACTAATGGTTCCAAAGGATTGGTGGGTGGAAGATCTTTGCGAGCTCCAACTTGATCTCTATAAGCGAGTCCTGTCAACTATTACAACCAATGGAAATGTTTCCGGGGCAGTTGTCGGAGAAGCTCTAAGTGCGTACACCTCTAGAAGGTTGCCTGGTTTCAATAAGGGTGTTATCCAGAGTGGTGATATCACAAAGAATAGATTATTATTGGAGACTATTGTCGGTTTATTGCCGGTAGATATGGGAAGTGGCTCATGCGGTTTCTCGCTGAAGTTATTGAAAGTGGCTATTCAACTGGATTGTGAAGTGTCGGTGAGATCCGAACTGATGCAGAGGATAGGCCAGAGGCTTGAGGAGGCTACGGTGGCTGATCTTTTGATTTGTGCGTCAGCTGGTGAAACAACTCACGATGTTGAAACTGTGCAGAAGCTAGTTGAAGTGTTTGTAGCACACGAGCATCAATCTTCGATGGAAGACGAATTGCAGGAGATCAGAAGCCCCAAGATGGTATCAAATACTTCGAGCAAGATAAAGGTTGCAAAGCTTGTCGATAGCTACCTTGCTGAGATTGCACGTGATCCTAATCTGCCTCTTCTCAGTTTTGTGAACATCGCCGATTTGGTATCAAGCTTTCCTAGACAGTCTCATGACGGTCTTTATCGTGCCATTGACATGTATTTAAAGGAACATCCTGGAATCAGCAAAAGTGAGAGGAAAAGAATATGTAGGTTGATGGACTGCAGGAAGCTATCTGCAGAAGCTTGCATGCATGCAGTGCAGAATGAGCGGCTTCCTTTACGTGTCGTTGTACAGGTTCTCTTCTTTGAGCAGATGAGAGCTTCAACAACATCATCATCAGGAGGCACGAGCACTCCTGATCTTCCCGGTTCCATCAGGGCATTGCATCCCGGTGGTTCTCACGGTAGTTCAAGGTCTACCACGACCAACACAGAAGAGGAATGGGATGCTGTGGCAACAGCAGAAGACGTAAAAGTTCTGAAAGGGGAACTCGCCGCACTAAAACTATCAAGTGGAGGTAGCCAGAGTAGTGACAGAAACAGCAACAACAATGACGGTGGTGGTATAGGCAATGCAGAAAAAGTAGCTGCTAACAAAATGAAAGGCTTCCTTATGTCCAAGAAGTTATTCTCTAAGCTTTGGTCGAGCAAAGAAAAAAACGGAGAGATTACCAGCTCTGATACGTCCGAAAGCCCTGCTTCTACTGTTGTTGAGGAGACAAAATCTACGCCATCTAGAAGTAGGAGACATTCAGTATCTTAA
Protein sequence

>Msa0835370

MKFMKLGSKPDSFQNDGDNVRYVATELASDIVVNVGDVKFYLHKFPLLSKSLRLQKLVSNTDEENDEIHIHDIPGGPVAFEICAKFCYGMVVTLNAYNVVAARCAAEYLEMYETIEKGNLIYKIEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEELKIVSHCIESIATKASMDPSKVEWSYTYNRKKLPSENGNEAHWNGVRKQLMVPKDWWVEDLCELQLDLYKRVLSTITTNGNVSGAVVGEALSAYTSRRLPGFNKGVIQSGDITKNRLLLETIVGLLPVDMGSGSCGFSLKLLKVAIQLDCEVSVRSELMQRIGQRLEEATVADLLICASAGETTHDVETVQKLVEVFVAHEHQSSMEDELQEIRSPKMVSNTSSKIKVAKLVDSYLAEIARDPNLPLLSFVNIADLVSSFPRQSHDGLYRAIDMYLKEHPGISKSERKRICRLMDCRKLSAEACMHAVQNERLPLRVVVQVLFFEQMRASTTSSSGGTSTPDLPGSIRALHPGGSHGSSRSTTTNTEEEWDAVATAEDVKVLKGELAALKLSSGGSQSSDRNSNNNDGGGIGNAEKVAANKMKGFLMSKKLFSKLWSSKEKNGEITSSDTSESPASTVVEETKSTPSRSRRHSVS*