AlfalfaGEDB | Msa0759090

M. sativa cultivar zhongmu-4 / Msa0759090

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009911 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0759090	XP_039690540.1	90.377	239	11	2	1	231	1	235	3.97e-142	407

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0759090	sp\|Q84JK2\|FD_ARATH	36.255	251	108	10	1	230	63	282	7.02e-25	102

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0759090	G7JXL9	86.056	251	11	2	1	231	1	247	1.41e-140	402

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0712770	Msa0759090	0.902616	8.080509e-79	-8.615850e-47
Msa0759090	Msa0838400	0.914893	1.122721e-84	-8.615850e-47
Msa0759090	Msa1336620	0.924726	4.790508e-90	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0759090	MtrunA17_Chr5g0405951	86.056	251	11	2	1	231	1	247	2.72e-144	402

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0759090	AT4G35900.1	36.255	251	108	10	1	230	63	282	7.13e-26	102
Msa0759090	AT2G17770.2	32.645	242	101	7	1	230	1	192	5.46e-19	82.0
Msa0759090	AT4G35900.2	32.039	206	97	8	1	193	63	238	1.91e-13	67.8

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Find 41 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTAAGAGCAGTAACAAG+AGG	0.641956	5_2:+14607970	None:intergenic
AACCTAATTAATGTTACCCT+TGG	0.391056	5_2:-14606876	Msa0759090:three_prime_UTR
AATTAACCATGGAAGAAGTT+TGG	0.329790	5_2:-14608227	None:intergenic
ACACCCACATTCTGATCATA+CGG	0.580440	5_2:+14607802	None:intergenic
ACTTAGAAGACAGCAACAAG+AGG	0.615687	5_2:-14607178	Msa0759090:intron
AGAGGGTCGTAGAGAAAATC+AGG	0.429767	5_2:+14607937	None:intergenic
AGCAGTAACAAGAGGTGGTG+TGG	0.622993	5_2:+14607978	None:intergenic
AGTACTCGTAATTCCACTTT+TGG	0.321768	5_2:-14608150	Msa0759090:CDS
ATAAGAGGATGATCAAGAAT+CGG	0.446318	5_2:-14607702	Msa0759090:CDS
ATCCAAGGGTAACATTAATT+AGG	0.258730	5_2:+14606874	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAAGAGGATGATCAAGAAT+CGG	-	chr5_2:14607365-14607384	Msa0759090:intron	30.0%
AAAGACATGTTGCAAATGTT+AGG	-	chr5_2:14607713-14607732	Msa0759090:CDS	30.0%
AACCTAATTAATGTTACCCT+TGG	-	chr5_2:14608191-14608210	Msa0759090:CDS	30.0%
ATCCAAGGGTAACATTAATT+AGG	+	chr5_2:14608196-14608215	None:intergenic	30.0%
ATAAGAGGATGATCAAGAAT+CGG	-	chr5_2:14607365-14607384	Msa0759090:intron	30.0%
AAAGACATGTTGCAAATGTT+AGG	-	chr5_2:14607713-14607732	Msa0759090:CDS	30.0%
AACCTAATTAATGTTACCCT+TGG	-	chr5_2:14608191-14608210	Msa0759090:CDS	30.0%
ATCCAAGGGTAACATTAATT+AGG	+	chr5_2:14608196-14608215	None:intergenic	30.0%
TTTGGTCATTCAATGAAGAC+AGG	+	chr5_2:14606877-14606896	None:intergenic	35.0%
AAACTAAGAGCAGTAACAAG+AGG	+	chr5_2:14607100-14607119	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	14606848	14608241	14606848	ID=Msa0759090;Name=Msa0759090
chr5_2	mRNA	14606848	14608241	14606848	ID=Msa0759090-mRNA-1;Parent=Msa0759090;Name=Msa0759090-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0.5\|0.33\|1\|1\|1\|3\|86\|231
chr5_2	exon	14606848	14607002	14606848	ID=Msa0759090-mRNA-1:exon:6651;Parent=Msa0759090-mRNA-1
chr5_2	exon	14607179	14607256	14607179	ID=Msa0759090-mRNA-1:exon:6650;Parent=Msa0759090-mRNA-1
chr5_2	exon	14607693	14608241	14607693	ID=Msa0759090-mRNA-1:exon:6649;Parent=Msa0759090-mRNA-1
chr5_2	CDS	14607693	14608241	14607693	ID=Msa0759090-mRNA-1:cds;Parent=Msa0759090-mRNA-1
chr5_2	CDS	14607179	14607256	14607179	ID=Msa0759090-mRNA-1:cds;Parent=Msa0759090-mRNA-1
chr5_2	CDS	14606934	14607002	14606934	ID=Msa0759090-mRNA-1:cds;Parent=Msa0759090-mRNA-1
chr5_2	three_prime_UTR	14606848	14606933	14606848	ID=Msa0759090-mRNA-1:three_prime_utr;Parent=Msa0759090-mRNA-1

Gene Sequence

>Msa0759090

ATGGAAGAAGTTTGGAAAGACATAAACCTGTCTTCATTGAATGACCAAAACACACGACCCATTATAATGAGTACTCGTAATTCCACTTTTGGCGGTGGTGTTATCCTTCAAGACTTTCTCACTCGACCCCTTACTTTAGACCCACCAAAAAGCTTAGATTATTCTTCTAATAATTCATCTTCTTCTGTTGCTTCAGATCAAAATAACAATAATGCTTCATTTTATTGCCCTAGCTCTACGACCACACCACCTCTTGTTACTGCTCTTAGTTTGAACTCTCGTCCTGATTTTCTCTACGACCCTCTTATCAGACACAACAAGCATAATAATTCTCAGTTACTACTTCAACAGCAGCAGCACCAACAACAACACAACATTGGTGTATCGAATGTTTCTGCTTGTTTTGTAAATGCTTCACCGTATGATCAGAATGTGGGTGTTGCTGCATCTAGTTCTTTCACTTGTTTTGGAAAGAGATTTGGTGAAGCACCTGATATTAGCCCTGGTGAAAGGAGAAATAAGAGGATGATCAAGAATCGGGAATCTGCTGCTTACACGAATGAACTAGAGCAGAAAGTTCAATTATTGCAGGAAGAGAATGCAAGACTTAGAAGACAGCAACAAGAGCTATGGGAAGCAGAAAGTGGTGGTCAGCAAAAGAAAAAGAGTAGCTTATATCGAACATCATCCTTTTGA

Protein sequence

>Msa0759090

MEEVWKDINLSSLNDQNTRPIIMSTRNSTFGGGVILQDFLTRPLTLDPPKSLDYSSNNSSSSVASDQNNNNASFYCPSSTTTPPLVTALSLNSRPDFLYDPLIRHNKHNNSQLLLQQQQHQQQHNIGVSNVSACFVNASPYDQNVGVAASSSFTCFGKRFGEAPDISPGERRNKRMIKNRESAAYTNELEQKVQLLQEENARLRRQQQELWEAESGGQQKKKSSLYRTSSF*