Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0759090 | XP_039690540.1 | 90.377 | 239 | 11 | 2 | 1 | 231 | 1 | 235 | 3.97e-142 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0759090 | sp|Q84JK2|FD_ARATH | 36.255 | 251 | 108 | 10 | 1 | 230 | 63 | 282 | 7.02e-25 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0759090 | G7JXL9 | 86.056 | 251 | 11 | 2 | 1 | 231 | 1 | 247 | 1.41e-140 | 402 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0712770 | Msa0759090 | 0.902616 | 8.080509e-79 | -8.615850e-47 |
| Msa0759090 | Msa0838400 | 0.914893 | 1.122721e-84 | -8.615850e-47 |
| Msa0759090 | Msa1336620 | 0.924726 | 4.790508e-90 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0759090 | MtrunA17_Chr5g0405951 | 86.056 | 251 | 11 | 2 | 1 | 231 | 1 | 247 | 2.72e-144 | 402 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0759090 | AT4G35900.1 | 36.255 | 251 | 108 | 10 | 1 | 230 | 63 | 282 | 7.13e-26 | 102 |
| Msa0759090 | AT2G17770.2 | 32.645 | 242 | 101 | 7 | 1 | 230 | 1 | 192 | 5.46e-19 | 82.0 |
| Msa0759090 | AT4G35900.2 | 32.039 | 206 | 97 | 8 | 1 | 193 | 63 | 238 | 1.91e-13 | 67.8 |
Find 41 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAGTTCTTTCACTTGTTT+TGG | 0.208039 | 5_2:-14607772 | Msa0759090:CDS |
| ATCCAAGGGTAACATTAATT+AGG | 0.258730 | 5_2:+14606874 | None:intergenic |
| ATTACGAGTACTCATTATAA+TGG | 0.298213 | 5_2:+14608161 | None:intergenic |
| AGTACTCGTAATTCCACTTT+TGG | 0.321768 | 5_2:-14608150 | Msa0759090:CDS |
| TTATAATGGGTCGTGTGTTT+TGG | 0.329596 | 5_2:+14608175 | None:intergenic |
| AATTAACCATGGAAGAAGTT+TGG | 0.329790 | 5_2:-14608227 | None:intergenic |
| GCAGAAAGTTCAATTATTGC+AGG | 0.372910 | 5_2:-14607214 | Msa0759090:CDS |
| CTCTTATTTCTCCTTTCACC+AGG | 0.381139 | 5_2:+14607718 | None:intergenic |
| CACCAATGTTGTGTTGTTGT+TGG | 0.389724 | 5_2:+14607860 | None:intergenic |
| AACCTAATTAATGTTACCCT+TGG | 0.391056 | 5_2:-14606876 | Msa0759090:three_prime_UTR |
| CTTTCACCAGGGCTAATATC+AGG | 0.413344 | 5_2:+14607730 | None:intergenic |
| AGAGGGTCGTAGAGAAAATC+AGG | 0.429767 | 5_2:+14607937 | None:intergenic |
| ATAAGAGGATGATCAAGAAT+CGG | 0.446318 | 5_2:-14607702 | Msa0759090:CDS |
| TGCTTGTTGTGTCTGATAAG+AGG | 0.458069 | 5_2:+14607919 | None:intergenic |
| ATGTATTATGACTTAATTTG+TGG | 0.461097 | 5_2:-14606847 | None:intergenic |
| TTACGAGTACTCATTATAAT+GGG | 0.471502 | 5_2:+14608162 | None:intergenic |
| GGTGGTGTGGTCGTAGAGCT+AGG | 0.478755 | 5_2:+14607991 | None:intergenic |
| GTCTTTCCAAACTTCTTCCA+TGG | 0.482645 | 5_2:+14608221 | None:intergenic |
| TAAGAGGATGATCAAGAATC+GGG | 0.505249 | 5_2:-14607701 | Msa0759090:CDS |
| GATAACACCACCGCCAAAAG+TGG | 0.506221 | 5_2:+14608137 | None:intergenic |
| TTTGGTCATTCAATGAAGAC+AGG | 0.517078 | 5_2:+14608193 | None:intergenic |
| GTCGAGTGAGAAAGTCTTGA+AGG | 0.517937 | 5_2:+14608115 | None:intergenic |
| TCATAATACATTTAAATCCA+AGG | 0.520857 | 5_2:+14606859 | None:intergenic |
| CTGATATTAGCCCTGGTGAA+AGG | 0.531306 | 5_2:-14607729 | Msa0759090:CDS |
| CATAATACATTTAAATCCAA+GGG | 0.568031 | 5_2:+14606860 | None:intergenic |
| ACACCCACATTCTGATCATA+CGG | 0.580440 | 5_2:+14607802 | None:intergenic |
| TTTGGTGGGTCTAAAGTAAG+GGG | 0.581231 | 5_2:+14608093 | None:intergenic |
| GCTTGTTGTGTCTGATAAGA+GGG | 0.581897 | 5_2:+14607920 | None:intergenic |
| GTGGTGTGGTCGTAGAGCTA+GGG | 0.588751 | 5_2:+14607992 | None:intergenic |
| CAGCTATGGGAAGCAGAAAG+TGG | 0.596986 | 5_2:-14606983 | Msa0759090:CDS |
| ACTTAGAAGACAGCAACAAG+AGG | 0.615687 | 5_2:-14607178 | Msa0759090:intron |
| CACCAACAACAACACAACAT+TGG | 0.617396 | 5_2:-14607862 | Msa0759090:CDS |
| TCTTATTTCTCCTTTCACCA+GGG | 0.617920 | 5_2:+14607719 | None:intergenic |
| AGCAGTAACAAGAGGTGGTG+TGG | 0.622993 | 5_2:+14607978 | None:intergenic |
| GAAGCACCTGATATTAGCCC+TGG | 0.631988 | 5_2:-14607736 | Msa0759090:CDS |
| AAACTAAGAGCAGTAACAAG+AGG | 0.641956 | 5_2:+14607970 | None:intergenic |
| CTAAGAGCAGTAACAAGAGG+TGG | 0.655914 | 5_2:+14607973 | None:intergenic |
| TCACCGTATGATCAGAATGT+GGG | 0.671767 | 5_2:-14607805 | Msa0759090:CDS |
| TTCACCGTATGATCAGAATG+TGG | 0.673365 | 5_2:-14607806 | Msa0759090:CDS |
| CTGGTGAAAGGAGAAATAAG+AGG | 0.693703 | 5_2:-14607717 | Msa0759090:CDS |
| CTATGGGAAGCAGAAAGTGG+TGG | 0.697914 | 5_2:-14606980 | Msa0759090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTGTTGTTTTTATTAA+TGG | - | chr5_2:14607779-14607798 | Msa0759090:CDS | 10.0% |
| !!! | AAAATTGTTGTTTTTATTAA+TGG | - | chr5_2:14607779-14607798 | Msa0759090:CDS | 10.0% |
| !!! | TAAAAACAACAATTTTCTTT+TGG | + | chr5_2:14607775-14607794 | None:intergenic | 15.0% |
| !!! | TAAAAACAACAATTTTCTTT+TGG | + | chr5_2:14607775-14607794 | None:intergenic | 15.0% |
| !! | CATACACTTAATTAATATTG+TGG | - | chr5_2:14607586-14607605 | Msa0759090:intron | 20.0% |
| !! | TTAATTAATATTGTGGTGAA+TGG | - | chr5_2:14607593-14607612 | Msa0759090:intron | 20.0% |
| !! | TAATTAATATTGTGGTGAAT+GGG | - | chr5_2:14607594-14607613 | Msa0759090:intron | 20.0% |
| !! | AACATAAAATATTCATGATG+TGG | - | chr5_2:14607656-14607675 | Msa0759090:intron | 20.0% |
| !! | CATAATACATTTAAATCCAA+GGG | + | chr5_2:14608210-14608229 | None:intergenic | 20.0% |
| !! | TCATAATACATTTAAATCCA+AGG | + | chr5_2:14608211-14608230 | None:intergenic | 20.0% |
| !! | CATACACTTAATTAATATTG+TGG | - | chr5_2:14607586-14607605 | Msa0759090:intron | 20.0% |
| !! | TTAATTAATATTGTGGTGAA+TGG | - | chr5_2:14607593-14607612 | Msa0759090:intron | 20.0% |
| !! | TAATTAATATTGTGGTGAAT+GGG | - | chr5_2:14607594-14607613 | Msa0759090:intron | 20.0% |
| !! | AACATAAAATATTCATGATG+TGG | - | chr5_2:14607656-14607675 | Msa0759090:intron | 20.0% |
| !! | CATAATACATTTAAATCCAA+GGG | + | chr5_2:14608210-14608229 | None:intergenic | 20.0% |
| !! | TCATAATACATTTAAATCCA+AGG | + | chr5_2:14608211-14608230 | None:intergenic | 20.0% |
| ! | TTACGAGTACTCATTATAAT+GGG | + | chr5_2:14606908-14606927 | None:intergenic | 25.0% |
| ! | ATTACGAGTACTCATTATAA+TGG | + | chr5_2:14606909-14606928 | None:intergenic | 25.0% |
| !!! | AATAATCTAAGCTTTTTGGT+GGG | + | chr5_2:14606991-14607010 | None:intergenic | 25.0% |
| !! | GAAGAATAATCTAAGCTTTT+TGG | + | chr5_2:14606995-14607014 | None:intergenic | 25.0% |
| ! | CTCAAAATTTAGTGTATGTT+AGG | - | chr5_2:14607448-14607467 | Msa0759090:intron | 25.0% |
| ! | AAATTTAGTGTATGTTAGGT+TGG | - | chr5_2:14607452-14607471 | Msa0759090:intron | 25.0% |
| ! | AATTAATATTGTGGTGAATG+GGG | - | chr5_2:14607595-14607614 | Msa0759090:intron | 25.0% |
| !! | AAGAGGTACATTATTGTATT+TGG | - | chr5_2:14607906-14607925 | Msa0759090:CDS | 25.0% |
| !!! | TTACATGTTTTGTTCTCAAA+AGG | + | chr5_2:14608151-14608170 | None:intergenic | 25.0% |
| ! | TTACGAGTACTCATTATAAT+GGG | + | chr5_2:14606908-14606927 | None:intergenic | 25.0% |
| ! | ATTACGAGTACTCATTATAA+TGG | + | chr5_2:14606909-14606928 | None:intergenic | 25.0% |
| !!! | AATAATCTAAGCTTTTTGGT+GGG | + | chr5_2:14606991-14607010 | None:intergenic | 25.0% |
| !! | GAAGAATAATCTAAGCTTTT+TGG | + | chr5_2:14606995-14607014 | None:intergenic | 25.0% |
| ! | CTCAAAATTTAGTGTATGTT+AGG | - | chr5_2:14607448-14607467 | Msa0759090:intron | 25.0% |
| ! | AAATTTAGTGTATGTTAGGT+TGG | - | chr5_2:14607452-14607471 | Msa0759090:intron | 25.0% |
| ! | AATTAATATTGTGGTGAATG+GGG | - | chr5_2:14607595-14607614 | Msa0759090:intron | 25.0% |
| !! | AAGAGGTACATTATTGTATT+TGG | - | chr5_2:14607906-14607925 | Msa0759090:CDS | 25.0% |
| !!! | TTACATGTTTTGTTCTCAAA+AGG | + | chr5_2:14608151-14608170 | None:intergenic | 25.0% |
| ! | GAATAATCTAAGCTTTTTGG+TGG | + | chr5_2:14606992-14607011 | None:intergenic | 30.0% |
| !!! | TCTAGTTCTTTCACTTGTTT+TGG | - | chr5_2:14607295-14607314 | Msa0759090:intron | 30.0% |
| !!! | ACTTGTTTTGGAAAGAGATT+TGG | - | chr5_2:14607307-14607326 | Msa0759090:intron | 30.0% |
| ATAAGAGGATGATCAAGAAT+CGG | - | chr5_2:14607365-14607384 | Msa0759090:intron | 30.0% | |
| !! | CTTGAGTTTTAACAGAATCA+CGG | + | chr5_2:14607508-14607527 | None:intergenic | 30.0% |
| ! | TAGATTGCTGATGATTTTGA+CGG | + | chr5_2:14607564-14607583 | None:intergenic | 30.0% |
| AAAGACATGTTGCAAATGTT+AGG | - | chr5_2:14607713-14607732 | Msa0759090:CDS | 30.0% | |
| !!! | GATTCATCTACTTTTTTGTG+TGG | - | chr5_2:14607801-14607820 | Msa0759090:CDS | 30.0% |
| !!! | CTTTTTTGTGTGGTTATTTC+AGG | - | chr5_2:14607811-14607830 | Msa0759090:CDS | 30.0% |
| !! | TGGTAGTAGGATTGATTTTA+GGG | - | chr5_2:14608038-14608057 | Msa0759090:CDS | 30.0% |
| AACCTAATTAATGTTACCCT+TGG | - | chr5_2:14608191-14608210 | Msa0759090:CDS | 30.0% | |
| ATCCAAGGGTAACATTAATT+AGG | + | chr5_2:14608196-14608215 | None:intergenic | 30.0% | |
| ! | GAATAATCTAAGCTTTTTGG+TGG | + | chr5_2:14606992-14607011 | None:intergenic | 30.0% |
| !!! | TCTAGTTCTTTCACTTGTTT+TGG | - | chr5_2:14607295-14607314 | Msa0759090:intron | 30.0% |
| !!! | ACTTGTTTTGGAAAGAGATT+TGG | - | chr5_2:14607307-14607326 | Msa0759090:intron | 30.0% |
| ATAAGAGGATGATCAAGAAT+CGG | - | chr5_2:14607365-14607384 | Msa0759090:intron | 30.0% | |
| !! | CTTGAGTTTTAACAGAATCA+CGG | + | chr5_2:14607508-14607527 | None:intergenic | 30.0% |
| ! | TAGATTGCTGATGATTTTGA+CGG | + | chr5_2:14607564-14607583 | None:intergenic | 30.0% |
| AAAGACATGTTGCAAATGTT+AGG | - | chr5_2:14607713-14607732 | Msa0759090:CDS | 30.0% | |
| !!! | GATTCATCTACTTTTTTGTG+TGG | - | chr5_2:14607801-14607820 | Msa0759090:CDS | 30.0% |
| !!! | CTTTTTTGTGTGGTTATTTC+AGG | - | chr5_2:14607811-14607830 | Msa0759090:CDS | 30.0% |
| !! | TGGTAGTAGGATTGATTTTA+GGG | - | chr5_2:14608038-14608057 | Msa0759090:CDS | 30.0% |
| AACCTAATTAATGTTACCCT+TGG | - | chr5_2:14608191-14608210 | Msa0759090:CDS | 30.0% | |
| ATCCAAGGGTAACATTAATT+AGG | + | chr5_2:14608196-14608215 | None:intergenic | 30.0% | |
| TTTGGTCATTCAATGAAGAC+AGG | + | chr5_2:14606877-14606896 | None:intergenic | 35.0% | |
| !!! | TTATAATGGGTCGTGTGTTT+TGG | + | chr5_2:14606895-14606914 | None:intergenic | 35.0% |
| ! | AGTACTCGTAATTCCACTTT+TGG | - | chr5_2:14606917-14606936 | Msa0759090:exon | 35.0% |
| !! | TTTTGGTGGGTCTAAAGTAA+GGG | + | chr5_2:14606978-14606997 | None:intergenic | 35.0% |
| !! | TTTTTGGTGGGTCTAAAGTA+AGG | + | chr5_2:14606979-14606998 | None:intergenic | 35.0% |
| AAACTAAGAGCAGTAACAAG+AGG | + | chr5_2:14607100-14607119 | None:intergenic | 35.0% | |
| ! | TCTTATTTCTCCTTTCACCA+GGG | + | chr5_2:14607351-14607370 | None:intergenic | 35.0% |
| TAAGAGGATGATCAAGAATC+GGG | - | chr5_2:14607366-14607385 | Msa0759090:intron | 35.0% | |
| CGTGATTCTGTTAAAACTCA+AGG | - | chr5_2:14607506-14607525 | Msa0759090:intron | 35.0% | |
| GTTAAAACTCAAGGAAGTCA+CGG | - | chr5_2:14607515-14607534 | Msa0759090:intron | 35.0% | |
| !! | TGATGATTTTGACGGAATCA+CGG | + | chr5_2:14607556-14607575 | None:intergenic | 35.0% |
| ACATGTTGCAAATGTTAGGT+GGG | - | chr5_2:14607717-14607736 | Msa0759090:CDS | 35.0% | |
| !!! | TGGGGCATTATTGTTTTTTG+TGG | - | chr5_2:14607736-14607755 | Msa0759090:CDS | 35.0% |
| !!! | GGGGCATTATTGTTTTTTGT+GGG | - | chr5_2:14607737-14607756 | Msa0759090:CDS | 35.0% |
| !!! | GGGCATTATTGTTTTTTGTG+GGG | - | chr5_2:14607738-14607757 | Msa0759090:CDS | 35.0% |
| GCAGAAAGTTCAATTATTGC+AGG | - | chr5_2:14607853-14607872 | Msa0759090:CDS | 35.0% | |
| CTTTCAATTCCACATAGTAG+TGG | - | chr5_2:14608018-14608037 | Msa0759090:CDS | 35.0% | |
| !! | GTGGTAGTAGGATTGATTTT+AGG | - | chr5_2:14608037-14608056 | Msa0759090:CDS | 35.0% |
| TTTGGTCATTCAATGAAGAC+AGG | + | chr5_2:14606877-14606896 | None:intergenic | 35.0% | |
| !!! | TTATAATGGGTCGTGTGTTT+TGG | + | chr5_2:14606895-14606914 | None:intergenic | 35.0% |
| ! | AGTACTCGTAATTCCACTTT+TGG | - | chr5_2:14606917-14606936 | Msa0759090:exon | 35.0% |
| !! | TTTTGGTGGGTCTAAAGTAA+GGG | + | chr5_2:14606978-14606997 | None:intergenic | 35.0% |
| !! | TTTTTGGTGGGTCTAAAGTA+AGG | + | chr5_2:14606979-14606998 | None:intergenic | 35.0% |
| AAACTAAGAGCAGTAACAAG+AGG | + | chr5_2:14607100-14607119 | None:intergenic | 35.0% | |
| ! | TCTTATTTCTCCTTTCACCA+GGG | + | chr5_2:14607351-14607370 | None:intergenic | 35.0% |
| TAAGAGGATGATCAAGAATC+GGG | - | chr5_2:14607366-14607385 | Msa0759090:intron | 35.0% | |
| CGTGATTCTGTTAAAACTCA+AGG | - | chr5_2:14607506-14607525 | Msa0759090:intron | 35.0% | |
| GTTAAAACTCAAGGAAGTCA+CGG | - | chr5_2:14607515-14607534 | Msa0759090:intron | 35.0% | |
| !! | TGATGATTTTGACGGAATCA+CGG | + | chr5_2:14607556-14607575 | None:intergenic | 35.0% |
| ACATGTTGCAAATGTTAGGT+GGG | - | chr5_2:14607717-14607736 | Msa0759090:CDS | 35.0% | |
| !!! | TGGGGCATTATTGTTTTTTG+TGG | - | chr5_2:14607736-14607755 | Msa0759090:CDS | 35.0% |
| !!! | GGGGCATTATTGTTTTTTGT+GGG | - | chr5_2:14607737-14607756 | Msa0759090:CDS | 35.0% |
| !!! | GGGCATTATTGTTTTTTGTG+GGG | - | chr5_2:14607738-14607757 | Msa0759090:CDS | 35.0% |
| GCAGAAAGTTCAATTATTGC+AGG | - | chr5_2:14607853-14607872 | Msa0759090:CDS | 35.0% | |
| CTTTCAATTCCACATAGTAG+TGG | - | chr5_2:14608018-14608037 | Msa0759090:CDS | 35.0% | |
| !! | GTGGTAGTAGGATTGATTTT+AGG | - | chr5_2:14608037-14608056 | Msa0759090:CDS | 35.0% |
| !! | ACTCGTAATTCCACTTTTGG+CGG | - | chr5_2:14606920-14606939 | Msa0759090:exon | 40.0% |
| ! | TTTGGTGGGTCTAAAGTAAG+GGG | + | chr5_2:14606977-14606996 | None:intergenic | 40.0% |
| !! | GCTTGTTGTGTCTGATAAGA+GGG | + | chr5_2:14607150-14607169 | None:intergenic | 40.0% |
| !! | TGCTTGTTGTGTCTGATAAG+AGG | + | chr5_2:14607151-14607170 | None:intergenic | 40.0% |
| CACCAACAACAACACAACAT+TGG | - | chr5_2:14607205-14607224 | Msa0759090:CDS | 40.0% | |
| ! | CACCAATGTTGTGTTGTTGT+TGG | + | chr5_2:14607210-14607229 | None:intergenic | 40.0% |
| TTCACCGTATGATCAGAATG+TGG | - | chr5_2:14607261-14607280 | Msa0759090:intron | 40.0% | |
| TCACCGTATGATCAGAATGT+GGG | - | chr5_2:14607262-14607281 | Msa0759090:intron | 40.0% | |
| ACACCCACATTCTGATCATA+CGG | + | chr5_2:14607268-14607287 | None:intergenic | 40.0% | |
| ! | CTCTTATTTCTCCTTTCACC+AGG | + | chr5_2:14607352-14607371 | None:intergenic | 40.0% |
| CTGGTGAAAGGAGAAATAAG+AGG | - | chr5_2:14607350-14607369 | Msa0759090:intron | 40.0% | |
| GACATGTTGCAAATGTTAGG+TGG | - | chr5_2:14607716-14607735 | Msa0759090:CDS | 40.0% | |
| CATGTTGCAAATGTTAGGTG+GGG | - | chr5_2:14607718-14607737 | Msa0759090:CDS | 40.0% | |
| ACTTAGAAGACAGCAACAAG+AGG | - | chr5_2:14607889-14607908 | Msa0759090:CDS | 40.0% | |
| TTCCACATAGTAGTGGTAGT+AGG | - | chr5_2:14608025-14608044 | Msa0759090:CDS | 40.0% | |
| ATCCTACTACCACTACTATG+TGG | + | chr5_2:14608030-14608049 | None:intergenic | 40.0% | |
| TGTCAATGTGAATGCAGCTA+TGG | - | chr5_2:14608070-14608089 | Msa0759090:CDS | 40.0% | |
| GTCAATGTGAATGCAGCTAT+GGG | - | chr5_2:14608071-14608090 | Msa0759090:CDS | 40.0% | |
| !! | ACTCGTAATTCCACTTTTGG+CGG | - | chr5_2:14606920-14606939 | Msa0759090:exon | 40.0% |
| ! | TTTGGTGGGTCTAAAGTAAG+GGG | + | chr5_2:14606977-14606996 | None:intergenic | 40.0% |
| !! | GCTTGTTGTGTCTGATAAGA+GGG | + | chr5_2:14607150-14607169 | None:intergenic | 40.0% |
| !! | TGCTTGTTGTGTCTGATAAG+AGG | + | chr5_2:14607151-14607170 | None:intergenic | 40.0% |
| CACCAACAACAACACAACAT+TGG | - | chr5_2:14607205-14607224 | Msa0759090:CDS | 40.0% | |
| ! | CACCAATGTTGTGTTGTTGT+TGG | + | chr5_2:14607210-14607229 | None:intergenic | 40.0% |
| TTCACCGTATGATCAGAATG+TGG | - | chr5_2:14607261-14607280 | Msa0759090:intron | 40.0% | |
| TCACCGTATGATCAGAATGT+GGG | - | chr5_2:14607262-14607281 | Msa0759090:intron | 40.0% | |
| ACACCCACATTCTGATCATA+CGG | + | chr5_2:14607268-14607287 | None:intergenic | 40.0% | |
| ! | CTCTTATTTCTCCTTTCACC+AGG | + | chr5_2:14607352-14607371 | None:intergenic | 40.0% |
| CTGGTGAAAGGAGAAATAAG+AGG | - | chr5_2:14607350-14607369 | Msa0759090:intron | 40.0% | |
| GACATGTTGCAAATGTTAGG+TGG | - | chr5_2:14607716-14607735 | Msa0759090:CDS | 40.0% | |
| CATGTTGCAAATGTTAGGTG+GGG | - | chr5_2:14607718-14607737 | Msa0759090:CDS | 40.0% | |
| ACTTAGAAGACAGCAACAAG+AGG | - | chr5_2:14607889-14607908 | Msa0759090:CDS | 40.0% | |
| TTCCACATAGTAGTGGTAGT+AGG | - | chr5_2:14608025-14608044 | Msa0759090:CDS | 40.0% | |
| ATCCTACTACCACTACTATG+TGG | + | chr5_2:14608030-14608049 | None:intergenic | 40.0% | |
| TGTCAATGTGAATGCAGCTA+TGG | - | chr5_2:14608070-14608089 | Msa0759090:CDS | 40.0% | |
| GTCAATGTGAATGCAGCTAT+GGG | - | chr5_2:14608071-14608090 | Msa0759090:CDS | 40.0% | |
| GTCGAGTGAGAAAGTCTTGA+AGG | + | chr5_2:14606955-14606974 | None:intergenic | 45.0% | |
| CTAAGAGCAGTAACAAGAGG+TGG | + | chr5_2:14607097-14607116 | None:intergenic | 45.0% | |
| AGAGGGTCGTAGAGAAAATC+AGG | + | chr5_2:14607133-14607152 | None:intergenic | 45.0% | |
| CTTTCACCAGGGCTAATATC+AGG | + | chr5_2:14607340-14607359 | None:intergenic | 45.0% | |
| CTGATATTAGCCCTGGTGAA+AGG | - | chr5_2:14607338-14607357 | Msa0759090:intron | 45.0% | |
| ACGTTCACGAGCTAGAAAAC+AGG | - | chr5_2:14607399-14607418 | Msa0759090:intron | 45.0% | |
| GTCGAGTGAGAAAGTCTTGA+AGG | + | chr5_2:14606955-14606974 | None:intergenic | 45.0% | |
| CTAAGAGCAGTAACAAGAGG+TGG | + | chr5_2:14607097-14607116 | None:intergenic | 45.0% | |
| AGAGGGTCGTAGAGAAAATC+AGG | + | chr5_2:14607133-14607152 | None:intergenic | 45.0% | |
| CTTTCACCAGGGCTAATATC+AGG | + | chr5_2:14607340-14607359 | None:intergenic | 45.0% | |
| CTGATATTAGCCCTGGTGAA+AGG | - | chr5_2:14607338-14607357 | Msa0759090:intron | 45.0% | |
| ACGTTCACGAGCTAGAAAAC+AGG | - | chr5_2:14607399-14607418 | Msa0759090:intron | 45.0% | |
| !! | CGTAATTCCACTTTTGGCGG+TGG | - | chr5_2:14606923-14606942 | Msa0759090:exon | 50.0% |
| GATAACACCACCGCCAAAAG+TGG | + | chr5_2:14606933-14606952 | None:intergenic | 50.0% | |
| AGCAGTAACAAGAGGTGGTG+TGG | + | chr5_2:14607092-14607111 | None:intergenic | 50.0% | |
| ! | GAAGCACCTGATATTAGCCC+TGG | - | chr5_2:14607331-14607350 | Msa0759090:intron | 50.0% |
| ! | TCAAGGAAGTCACGGTGTCA+CGG | - | chr5_2:14607523-14607542 | Msa0759090:intron | 50.0% |
| CAGCTATGGGAAGCAGAAAG+TGG | - | chr5_2:14608084-14608103 | Msa0759090:CDS | 50.0% | |
| CTATGGGAAGCAGAAAGTGG+TGG | - | chr5_2:14608087-14608106 | Msa0759090:CDS | 50.0% | |
| !! | CGTAATTCCACTTTTGGCGG+TGG | - | chr5_2:14606923-14606942 | Msa0759090:exon | 50.0% |
| GATAACACCACCGCCAAAAG+TGG | + | chr5_2:14606933-14606952 | None:intergenic | 50.0% | |
| AGCAGTAACAAGAGGTGGTG+TGG | + | chr5_2:14607092-14607111 | None:intergenic | 50.0% | |
| ! | GAAGCACCTGATATTAGCCC+TGG | - | chr5_2:14607331-14607350 | Msa0759090:intron | 50.0% |
| ! | TCAAGGAAGTCACGGTGTCA+CGG | - | chr5_2:14607523-14607542 | Msa0759090:intron | 50.0% |
| CAGCTATGGGAAGCAGAAAG+TGG | - | chr5_2:14608084-14608103 | Msa0759090:CDS | 50.0% | |
| CTATGGGAAGCAGAAAGTGG+TGG | - | chr5_2:14608087-14608106 | Msa0759090:CDS | 50.0% | |
| GTGGTGTGGTCGTAGAGCTA+GGG | + | chr5_2:14607078-14607097 | None:intergenic | 55.0% | |
| GTGGTGTGGTCGTAGAGCTA+GGG | + | chr5_2:14607078-14607097 | None:intergenic | 55.0% | |
| GGTGGTGTGGTCGTAGAGCT+AGG | + | chr5_2:14607079-14607098 | None:intergenic | 60.0% | |
| !! | AGGAAGTCACGGTGTCACGG+TGG | - | chr5_2:14607526-14607545 | Msa0759090:intron | 60.0% |
| GGTGGTGTGGTCGTAGAGCT+AGG | + | chr5_2:14607079-14607098 | None:intergenic | 60.0% | |
| !! | AGGAAGTCACGGTGTCACGG+TGG | - | chr5_2:14607526-14607545 | Msa0759090:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 14606848 | 14608241 | 14606848 | ID=Msa0759090;Name=Msa0759090 |
| chr5_2 | mRNA | 14606848 | 14608241 | 14606848 | ID=Msa0759090-mRNA-1;Parent=Msa0759090;Name=Msa0759090-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.33|1|1|1|3|86|231 |
| chr5_2 | exon | 14606848 | 14607002 | 14606848 | ID=Msa0759090-mRNA-1:exon:6651;Parent=Msa0759090-mRNA-1 |
| chr5_2 | exon | 14607179 | 14607256 | 14607179 | ID=Msa0759090-mRNA-1:exon:6650;Parent=Msa0759090-mRNA-1 |
| chr5_2 | exon | 14607693 | 14608241 | 14607693 | ID=Msa0759090-mRNA-1:exon:6649;Parent=Msa0759090-mRNA-1 |
| chr5_2 | CDS | 14607693 | 14608241 | 14607693 | ID=Msa0759090-mRNA-1:cds;Parent=Msa0759090-mRNA-1 |
| chr5_2 | CDS | 14607179 | 14607256 | 14607179 | ID=Msa0759090-mRNA-1:cds;Parent=Msa0759090-mRNA-1 |
| chr5_2 | CDS | 14606934 | 14607002 | 14606934 | ID=Msa0759090-mRNA-1:cds;Parent=Msa0759090-mRNA-1 |
| chr5_2 | three_prime_UTR | 14606848 | 14606933 | 14606848 | ID=Msa0759090-mRNA-1:three_prime_utr;Parent=Msa0759090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
