Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0838400 | XP_039690540.1 | 90.377 | 239 | 11 | 2 | 1 | 231 | 1 | 235 | 3.97e-142 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0838400 | sp|Q84JK2|FD_ARATH | 36.255 | 251 | 108 | 10 | 1 | 230 | 63 | 282 | 7.02e-25 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0838400 | G7JXL9 | 86.056 | 251 | 11 | 2 | 1 | 231 | 1 | 247 | 1.41e-140 | 402 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0691160 | Msa0838400 | 0.810139 | 1.336949e-50 | -8.615850e-47 |
| Msa0712770 | Msa0838400 | 0.941199 | 6.300321e-101 | -8.615850e-47 |
| Msa0759090 | Msa0838400 | 0.914893 | 1.122721e-84 | -8.615850e-47 |
| Msa0838400 | Msa0896350 | 0.806903 | 6.560637e-50 | -8.615850e-47 |
| Msa0838400 | Msa0922750 | 0.822014 | 2.970597e-53 | -8.615850e-47 |
| Msa0838400 | Msa1006830 | 0.814378 | 1.588026e-51 | -8.615850e-47 |
| Msa0838400 | Msa1007870 | 0.800496 | 1.402611e-48 | -8.615850e-47 |
| Msa0838400 | Msa1201160 | 0.819296 | 1.251400e-52 | -8.615850e-47 |
| Msa0838400 | Msa1294290 | 0.800493 | 1.404556e-48 | -8.615850e-47 |
| Msa0838400 | Msa1336620 | 0.931537 | 3.263933e-94 | -8.615850e-47 |
| Msa0838400 | Msa1420060 | 0.807162 | 5.782074e-50 | -8.615850e-47 |
| Msa0838400 | Msa1421550 | 0.807473 | 4.969965e-50 | -8.615850e-47 |
| Msa0451400 | Msa0838400 | 0.806328 | 8.677736e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0838400 | MtrunA17_Chr5g0405951 | 86.056 | 251 | 11 | 2 | 1 | 231 | 1 | 247 | 2.72e-144 | 402 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0838400 | AT4G35900.1 | 36.255 | 251 | 108 | 10 | 1 | 230 | 63 | 282 | 7.13e-26 | 102 |
| Msa0838400 | AT2G17770.2 | 32.645 | 242 | 101 | 7 | 1 | 230 | 1 | 192 | 5.46e-19 | 82.0 |
| Msa0838400 | AT4G35900.2 | 32.039 | 206 | 97 | 8 | 1 | 193 | 63 | 238 | 1.91e-13 | 67.8 |
Find 40 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAGTTCTTTCACTTGTTT+TGG | 0.208039 | 5_4:-12783735 | Msa0838400:CDS |
| ATTACGAGTACTCATTATAA+TGG | 0.298213 | 5_4:+12784124 | None:intergenic |
| AGTACTCGTAATTCCACTTT+TGG | 0.321768 | 5_4:-12784113 | Msa0838400:CDS |
| TTATAATGGGTCGTGTGTTT+TGG | 0.329596 | 5_4:+12784138 | None:intergenic |
| AATTAACCATGGAAGAAGTT+TGG | 0.329790 | 5_4:-12784190 | None:intergenic |
| GCAGAAAGTTCAATTATTGC+AGG | 0.372910 | 5_4:-12783177 | Msa0838400:CDS |
| CTCTTATTTCTCCTTTCACC+AGG | 0.381139 | 5_4:+12783681 | None:intergenic |
| CACCAATGTTGTGTTGTTGT+TGG | 0.389724 | 5_4:+12783823 | None:intergenic |
| AAACTAATTAATGTTACCCT+TGG | 0.412585 | 5_4:-12782842 | Msa0838400:three_prime_UTR |
| CTTTCACCAGGGCTAATATC+AGG | 0.413344 | 5_4:+12783693 | None:intergenic |
| AGAGGGTCGTAGAGAAAATC+AGG | 0.429767 | 5_4:+12783900 | None:intergenic |
| ATAAGAGGATGATCAAGAAT+CGG | 0.446318 | 5_4:-12783665 | Msa0838400:CDS |
| TGCTTGTTGTGTCTGATAAG+AGG | 0.458069 | 5_4:+12783882 | None:intergenic |
| ATGTATTATGACTTAATTTG+TGG | 0.461097 | 5_4:-12782813 | None:intergenic |
| TTACGAGTACTCATTATAAT+GGG | 0.471502 | 5_4:+12784125 | None:intergenic |
| GGTGGTGTGGTCGTAGAGCT+AGG | 0.478755 | 5_4:+12783954 | None:intergenic |
| GTCTTTCCAAACTTCTTCCA+TGG | 0.482645 | 5_4:+12784184 | None:intergenic |
| TAAGAGGATGATCAAGAATC+GGG | 0.505249 | 5_4:-12783664 | Msa0838400:CDS |
| GATAACACCACCGCCAAAAG+TGG | 0.506221 | 5_4:+12784100 | None:intergenic |
| TTTGGTCATTCAATGAAGAC+AGG | 0.517078 | 5_4:+12784156 | None:intergenic |
| GTCGAGTGAGAAAGTCTTGA+AGG | 0.517937 | 5_4:+12784078 | None:intergenic |
| TCATAATACATTTAAATCCA+AGG | 0.520857 | 5_4:+12782825 | None:intergenic |
| CTGATATTAGCCCTGGTGAA+AGG | 0.531306 | 5_4:-12783692 | Msa0838400:CDS |
| CATAATACATTTAAATCCAA+GGG | 0.568031 | 5_4:+12782826 | None:intergenic |
| ACACCCACATTCTGATCATA+CGG | 0.580440 | 5_4:+12783765 | None:intergenic |
| TTTGGTGGGTCTAAAGTAAG+GGG | 0.581231 | 5_4:+12784056 | None:intergenic |
| GCTTGTTGTGTCTGATAAGA+GGG | 0.581897 | 5_4:+12783883 | None:intergenic |
| GTGGTGTGGTCGTAGAGCTA+GGG | 0.588751 | 5_4:+12783955 | None:intergenic |
| CAGCTATGGGAAGCAGAAAG+TGG | 0.596986 | 5_4:-12782949 | Msa0838400:CDS |
| ACTTAGAAGACAGCAACAAG+AGG | 0.615687 | 5_4:-12783141 | Msa0838400:intron |
| CACCAACAACAACACAACAT+TGG | 0.617396 | 5_4:-12783825 | Msa0838400:CDS |
| TCTTATTTCTCCTTTCACCA+GGG | 0.617920 | 5_4:+12783682 | None:intergenic |
| AGCAGTAACAAGAGGTGGTG+TGG | 0.622993 | 5_4:+12783941 | None:intergenic |
| GAAGCACCTGATATTAGCCC+TGG | 0.631988 | 5_4:-12783699 | Msa0838400:CDS |
| AAACTAAGAGCAGTAACAAG+AGG | 0.641956 | 5_4:+12783933 | None:intergenic |
| CTAAGAGCAGTAACAAGAGG+TGG | 0.655914 | 5_4:+12783936 | None:intergenic |
| TCACCGTATGATCAGAATGT+GGG | 0.671767 | 5_4:-12783768 | Msa0838400:CDS |
| TTCACCGTATGATCAGAATG+TGG | 0.673365 | 5_4:-12783769 | Msa0838400:CDS |
| CTGGTGAAAGGAGAAATAAG+AGG | 0.693703 | 5_4:-12783680 | Msa0838400:CDS |
| CTATGGGAAGCAGAAAGTGG+TGG | 0.697914 | 5_4:-12782946 | Msa0838400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTGTTGTTTTTATTAA+TGG | - | chr5_4:12783745-12783764 | Msa0838400:CDS | 10.0% |
| !!! | AAAATTGTTGTTTTTATTAA+TGG | - | chr5_4:12783745-12783764 | Msa0838400:CDS | 10.0% |
| !! | AACATAAAATATTTATGATG+TGG | - | chr5_4:12783622-12783641 | Msa0838400:intron | 15.0% |
| !!! | TAAAAACAACAATTTTCTTT+TGG | + | chr5_4:12783741-12783760 | None:intergenic | 15.0% |
| !! | AACATAAAATATTTATGATG+TGG | - | chr5_4:12783622-12783641 | Msa0838400:intron | 15.0% |
| !!! | TAAAAACAACAATTTTCTTT+TGG | + | chr5_4:12783741-12783760 | None:intergenic | 15.0% |
| !! | CATACACTTAATTAATATTG+TGG | - | chr5_4:12783552-12783571 | Msa0838400:intron | 20.0% |
| !! | TTAATTAATATTGTGGTGAA+TGG | - | chr5_4:12783559-12783578 | Msa0838400:intron | 20.0% |
| !! | TAATTAATATTGTGGTGAAT+GGG | - | chr5_4:12783560-12783579 | Msa0838400:intron | 20.0% |
| !! | CATAATACATTTAAATCCAA+GGG | + | chr5_4:12784173-12784192 | None:intergenic | 20.0% |
| !! | TCATAATACATTTAAATCCA+AGG | + | chr5_4:12784174-12784193 | None:intergenic | 20.0% |
| !! | CATACACTTAATTAATATTG+TGG | - | chr5_4:12783552-12783571 | Msa0838400:intron | 20.0% |
| !! | TTAATTAATATTGTGGTGAA+TGG | - | chr5_4:12783559-12783578 | Msa0838400:intron | 20.0% |
| !! | TAATTAATATTGTGGTGAAT+GGG | - | chr5_4:12783560-12783579 | Msa0838400:intron | 20.0% |
| !! | CATAATACATTTAAATCCAA+GGG | + | chr5_4:12784173-12784192 | None:intergenic | 20.0% |
| !! | TCATAATACATTTAAATCCA+AGG | + | chr5_4:12784174-12784193 | None:intergenic | 20.0% |
| ! | TTACGAGTACTCATTATAAT+GGG | + | chr5_4:12782874-12782893 | None:intergenic | 25.0% |
| ! | ATTACGAGTACTCATTATAA+TGG | + | chr5_4:12782875-12782894 | None:intergenic | 25.0% |
| !!! | AATAATCTAAGCTTTTTGGT+GGG | + | chr5_4:12782957-12782976 | None:intergenic | 25.0% |
| !! | GAAGAATAATCTAAGCTTTT+TGG | + | chr5_4:12782961-12782980 | None:intergenic | 25.0% |
| ! | CTCAAAATTTAGTGTATGTT+AGG | - | chr5_4:12783414-12783433 | Msa0838400:intron | 25.0% |
| ! | AAATTTAGTGTATGTTAGGT+TGG | - | chr5_4:12783418-12783437 | Msa0838400:intron | 25.0% |
| ! | AATTAATATTGTGGTGAATG+GGG | - | chr5_4:12783561-12783580 | Msa0838400:intron | 25.0% |
| !! | AAGAGGTACATTATTGTATT+TGG | - | chr5_4:12783872-12783891 | Msa0838400:CDS | 25.0% |
| !!! | TTACATGTTTTGTTCTCAAA+AGG | + | chr5_4:12784114-12784133 | None:intergenic | 25.0% |
| ! | AAACTAATTAATGTTACCCT+TGG | - | chr5_4:12784154-12784173 | Msa0838400:CDS | 25.0% |
| ! | TTACGAGTACTCATTATAAT+GGG | + | chr5_4:12782874-12782893 | None:intergenic | 25.0% |
| ! | ATTACGAGTACTCATTATAA+TGG | + | chr5_4:12782875-12782894 | None:intergenic | 25.0% |
| !!! | AATAATCTAAGCTTTTTGGT+GGG | + | chr5_4:12782957-12782976 | None:intergenic | 25.0% |
| !! | GAAGAATAATCTAAGCTTTT+TGG | + | chr5_4:12782961-12782980 | None:intergenic | 25.0% |
| ! | CTCAAAATTTAGTGTATGTT+AGG | - | chr5_4:12783414-12783433 | Msa0838400:intron | 25.0% |
| ! | AAATTTAGTGTATGTTAGGT+TGG | - | chr5_4:12783418-12783437 | Msa0838400:intron | 25.0% |
| ! | AATTAATATTGTGGTGAATG+GGG | - | chr5_4:12783561-12783580 | Msa0838400:intron | 25.0% |
| !! | AAGAGGTACATTATTGTATT+TGG | - | chr5_4:12783872-12783891 | Msa0838400:CDS | 25.0% |
| !!! | TTACATGTTTTGTTCTCAAA+AGG | + | chr5_4:12784114-12784133 | None:intergenic | 25.0% |
| ! | AAACTAATTAATGTTACCCT+TGG | - | chr5_4:12784154-12784173 | Msa0838400:CDS | 25.0% |
| ! | GAATAATCTAAGCTTTTTGG+TGG | + | chr5_4:12782958-12782977 | None:intergenic | 30.0% |
| !!! | TCTAGTTCTTTCACTTGTTT+TGG | - | chr5_4:12783261-12783280 | Msa0838400:intron | 30.0% |
| !!! | ACTTGTTTTGGAAAGAGATT+TGG | - | chr5_4:12783273-12783292 | Msa0838400:intron | 30.0% |
| ATAAGAGGATGATCAAGAAT+CGG | - | chr5_4:12783331-12783350 | Msa0838400:intron | 30.0% | |
| !! | CTTGAGTTTTAACAGAATCA+CGG | + | chr5_4:12783474-12783493 | None:intergenic | 30.0% |
| ! | TAGATTGCTGATGATTTTGA+CGG | + | chr5_4:12783530-12783549 | None:intergenic | 30.0% |
| AAAGACATGTTGCAAATGTT+AGG | - | chr5_4:12783679-12783698 | Msa0838400:CDS | 30.0% | |
| !!! | GGGCATTATTGTTTTTTGTA+GGG | - | chr5_4:12783704-12783723 | Msa0838400:CDS | 30.0% |
| !!! | GATTCATCTACTTTTTTGTG+TGG | - | chr5_4:12783767-12783786 | Msa0838400:CDS | 30.0% |
| !!! | CTTTTTTGTGTGGTTATTTC+AGG | - | chr5_4:12783777-12783796 | Msa0838400:CDS | 30.0% |
| !! | TGGTAGTAGGATTGATTTTA+GGG | - | chr5_4:12784001-12784020 | Msa0838400:CDS | 30.0% |
| ! | GAATAATCTAAGCTTTTTGG+TGG | + | chr5_4:12782958-12782977 | None:intergenic | 30.0% |
| !!! | TCTAGTTCTTTCACTTGTTT+TGG | - | chr5_4:12783261-12783280 | Msa0838400:intron | 30.0% |
| !!! | ACTTGTTTTGGAAAGAGATT+TGG | - | chr5_4:12783273-12783292 | Msa0838400:intron | 30.0% |
| ATAAGAGGATGATCAAGAAT+CGG | - | chr5_4:12783331-12783350 | Msa0838400:intron | 30.0% | |
| !! | CTTGAGTTTTAACAGAATCA+CGG | + | chr5_4:12783474-12783493 | None:intergenic | 30.0% |
| ! | TAGATTGCTGATGATTTTGA+CGG | + | chr5_4:12783530-12783549 | None:intergenic | 30.0% |
| AAAGACATGTTGCAAATGTT+AGG | - | chr5_4:12783679-12783698 | Msa0838400:CDS | 30.0% | |
| !!! | GGGCATTATTGTTTTTTGTA+GGG | - | chr5_4:12783704-12783723 | Msa0838400:CDS | 30.0% |
| !!! | GATTCATCTACTTTTTTGTG+TGG | - | chr5_4:12783767-12783786 | Msa0838400:CDS | 30.0% |
| !!! | CTTTTTTGTGTGGTTATTTC+AGG | - | chr5_4:12783777-12783796 | Msa0838400:CDS | 30.0% |
| !! | TGGTAGTAGGATTGATTTTA+GGG | - | chr5_4:12784001-12784020 | Msa0838400:CDS | 30.0% |
| TTTGGTCATTCAATGAAGAC+AGG | + | chr5_4:12782843-12782862 | None:intergenic | 35.0% | |
| !!! | TTATAATGGGTCGTGTGTTT+TGG | + | chr5_4:12782861-12782880 | None:intergenic | 35.0% |
| ! | AGTACTCGTAATTCCACTTT+TGG | - | chr5_4:12782883-12782902 | Msa0838400:exon | 35.0% |
| !! | TTTTGGTGGGTCTAAAGTAA+GGG | + | chr5_4:12782944-12782963 | None:intergenic | 35.0% |
| !! | TTTTTGGTGGGTCTAAAGTA+AGG | + | chr5_4:12782945-12782964 | None:intergenic | 35.0% |
| AAACTAAGAGCAGTAACAAG+AGG | + | chr5_4:12783066-12783085 | None:intergenic | 35.0% | |
| ! | TCTTATTTCTCCTTTCACCA+GGG | + | chr5_4:12783317-12783336 | None:intergenic | 35.0% |
| TAAGAGGATGATCAAGAATC+GGG | - | chr5_4:12783332-12783351 | Msa0838400:intron | 35.0% | |
| CGTGATTCTGTTAAAACTCA+AGG | - | chr5_4:12783472-12783491 | Msa0838400:intron | 35.0% | |
| GTTAAAACTCAAGGAAGTCA+CGG | - | chr5_4:12783481-12783500 | Msa0838400:intron | 35.0% | |
| !! | TGATGATTTTGACGGAATCA+CGG | + | chr5_4:12783522-12783541 | None:intergenic | 35.0% |
| ACATGTTGCAAATGTTAGGT+GGG | - | chr5_4:12783683-12783702 | Msa0838400:CDS | 35.0% | |
| !!! | GGGGCATTATTGTTTTTTGT+AGG | - | chr5_4:12783703-12783722 | Msa0838400:CDS | 35.0% |
| GCAGAAAGTTCAATTATTGC+AGG | - | chr5_4:12783819-12783838 | Msa0838400:CDS | 35.0% | |
| CTTTCAATTCCACATAGTAG+TGG | - | chr5_4:12783981-12784000 | Msa0838400:CDS | 35.0% | |
| !! | GTGGTAGTAGGATTGATTTT+AGG | - | chr5_4:12784000-12784019 | Msa0838400:CDS | 35.0% |
| TTTGGTCATTCAATGAAGAC+AGG | + | chr5_4:12782843-12782862 | None:intergenic | 35.0% | |
| !!! | TTATAATGGGTCGTGTGTTT+TGG | + | chr5_4:12782861-12782880 | None:intergenic | 35.0% |
| ! | AGTACTCGTAATTCCACTTT+TGG | - | chr5_4:12782883-12782902 | Msa0838400:exon | 35.0% |
| !! | TTTTGGTGGGTCTAAAGTAA+GGG | + | chr5_4:12782944-12782963 | None:intergenic | 35.0% |
| !! | TTTTTGGTGGGTCTAAAGTA+AGG | + | chr5_4:12782945-12782964 | None:intergenic | 35.0% |
| AAACTAAGAGCAGTAACAAG+AGG | + | chr5_4:12783066-12783085 | None:intergenic | 35.0% | |
| ! | TCTTATTTCTCCTTTCACCA+GGG | + | chr5_4:12783317-12783336 | None:intergenic | 35.0% |
| TAAGAGGATGATCAAGAATC+GGG | - | chr5_4:12783332-12783351 | Msa0838400:intron | 35.0% | |
| CGTGATTCTGTTAAAACTCA+AGG | - | chr5_4:12783472-12783491 | Msa0838400:intron | 35.0% | |
| GTTAAAACTCAAGGAAGTCA+CGG | - | chr5_4:12783481-12783500 | Msa0838400:intron | 35.0% | |
| !! | TGATGATTTTGACGGAATCA+CGG | + | chr5_4:12783522-12783541 | None:intergenic | 35.0% |
| ACATGTTGCAAATGTTAGGT+GGG | - | chr5_4:12783683-12783702 | Msa0838400:CDS | 35.0% | |
| !!! | GGGGCATTATTGTTTTTTGT+AGG | - | chr5_4:12783703-12783722 | Msa0838400:CDS | 35.0% |
| GCAGAAAGTTCAATTATTGC+AGG | - | chr5_4:12783819-12783838 | Msa0838400:CDS | 35.0% | |
| CTTTCAATTCCACATAGTAG+TGG | - | chr5_4:12783981-12784000 | Msa0838400:CDS | 35.0% | |
| !! | GTGGTAGTAGGATTGATTTT+AGG | - | chr5_4:12784000-12784019 | Msa0838400:CDS | 35.0% |
| !! | ACTCGTAATTCCACTTTTGG+CGG | - | chr5_4:12782886-12782905 | Msa0838400:exon | 40.0% |
| ! | TTTGGTGGGTCTAAAGTAAG+GGG | + | chr5_4:12782943-12782962 | None:intergenic | 40.0% |
| !! | GCTTGTTGTGTCTGATAAGA+GGG | + | chr5_4:12783116-12783135 | None:intergenic | 40.0% |
| !! | TGCTTGTTGTGTCTGATAAG+AGG | + | chr5_4:12783117-12783136 | None:intergenic | 40.0% |
| CACCAACAACAACACAACAT+TGG | - | chr5_4:12783171-12783190 | Msa0838400:CDS | 40.0% | |
| ! | CACCAATGTTGTGTTGTTGT+TGG | + | chr5_4:12783176-12783195 | None:intergenic | 40.0% |
| TTCACCGTATGATCAGAATG+TGG | - | chr5_4:12783227-12783246 | Msa0838400:intron | 40.0% | |
| TCACCGTATGATCAGAATGT+GGG | - | chr5_4:12783228-12783247 | Msa0838400:intron | 40.0% | |
| ACACCCACATTCTGATCATA+CGG | + | chr5_4:12783234-12783253 | None:intergenic | 40.0% | |
| ! | CTCTTATTTCTCCTTTCACC+AGG | + | chr5_4:12783318-12783337 | None:intergenic | 40.0% |
| CTGGTGAAAGGAGAAATAAG+AGG | - | chr5_4:12783316-12783335 | Msa0838400:intron | 40.0% | |
| GACATGTTGCAAATGTTAGG+TGG | - | chr5_4:12783682-12783701 | Msa0838400:CDS | 40.0% | |
| CATGTTGCAAATGTTAGGTG+GGG | - | chr5_4:12783684-12783703 | Msa0838400:CDS | 40.0% | |
| ACTTAGAAGACAGCAACAAG+AGG | - | chr5_4:12783855-12783874 | Msa0838400:CDS | 40.0% | |
| TTCCACATAGTAGTGGTAGT+AGG | - | chr5_4:12783988-12784007 | Msa0838400:CDS | 40.0% | |
| ATCCTACTACCACTACTATG+TGG | + | chr5_4:12783993-12784012 | None:intergenic | 40.0% | |
| TGTCAATGTGAATGCAGCTA+TGG | - | chr5_4:12784033-12784052 | Msa0838400:CDS | 40.0% | |
| GTCAATGTGAATGCAGCTAT+GGG | - | chr5_4:12784034-12784053 | Msa0838400:CDS | 40.0% | |
| !! | ACTCGTAATTCCACTTTTGG+CGG | - | chr5_4:12782886-12782905 | Msa0838400:exon | 40.0% |
| ! | TTTGGTGGGTCTAAAGTAAG+GGG | + | chr5_4:12782943-12782962 | None:intergenic | 40.0% |
| !! | GCTTGTTGTGTCTGATAAGA+GGG | + | chr5_4:12783116-12783135 | None:intergenic | 40.0% |
| !! | TGCTTGTTGTGTCTGATAAG+AGG | + | chr5_4:12783117-12783136 | None:intergenic | 40.0% |
| CACCAACAACAACACAACAT+TGG | - | chr5_4:12783171-12783190 | Msa0838400:CDS | 40.0% | |
| ! | CACCAATGTTGTGTTGTTGT+TGG | + | chr5_4:12783176-12783195 | None:intergenic | 40.0% |
| TTCACCGTATGATCAGAATG+TGG | - | chr5_4:12783227-12783246 | Msa0838400:intron | 40.0% | |
| TCACCGTATGATCAGAATGT+GGG | - | chr5_4:12783228-12783247 | Msa0838400:intron | 40.0% | |
| ACACCCACATTCTGATCATA+CGG | + | chr5_4:12783234-12783253 | None:intergenic | 40.0% | |
| ! | CTCTTATTTCTCCTTTCACC+AGG | + | chr5_4:12783318-12783337 | None:intergenic | 40.0% |
| CTGGTGAAAGGAGAAATAAG+AGG | - | chr5_4:12783316-12783335 | Msa0838400:intron | 40.0% | |
| GACATGTTGCAAATGTTAGG+TGG | - | chr5_4:12783682-12783701 | Msa0838400:CDS | 40.0% | |
| CATGTTGCAAATGTTAGGTG+GGG | - | chr5_4:12783684-12783703 | Msa0838400:CDS | 40.0% | |
| ACTTAGAAGACAGCAACAAG+AGG | - | chr5_4:12783855-12783874 | Msa0838400:CDS | 40.0% | |
| TTCCACATAGTAGTGGTAGT+AGG | - | chr5_4:12783988-12784007 | Msa0838400:CDS | 40.0% | |
| ATCCTACTACCACTACTATG+TGG | + | chr5_4:12783993-12784012 | None:intergenic | 40.0% | |
| TGTCAATGTGAATGCAGCTA+TGG | - | chr5_4:12784033-12784052 | Msa0838400:CDS | 40.0% | |
| GTCAATGTGAATGCAGCTAT+GGG | - | chr5_4:12784034-12784053 | Msa0838400:CDS | 40.0% | |
| GTCGAGTGAGAAAGTCTTGA+AGG | + | chr5_4:12782921-12782940 | None:intergenic | 45.0% | |
| CTAAGAGCAGTAACAAGAGG+TGG | + | chr5_4:12783063-12783082 | None:intergenic | 45.0% | |
| AGAGGGTCGTAGAGAAAATC+AGG | + | chr5_4:12783099-12783118 | None:intergenic | 45.0% | |
| CTTTCACCAGGGCTAATATC+AGG | + | chr5_4:12783306-12783325 | None:intergenic | 45.0% | |
| CTGATATTAGCCCTGGTGAA+AGG | - | chr5_4:12783304-12783323 | Msa0838400:intron | 45.0% | |
| ACGTTCACGAGCTAGAAAAC+AGG | - | chr5_4:12783365-12783384 | Msa0838400:intron | 45.0% | |
| GTCGAGTGAGAAAGTCTTGA+AGG | + | chr5_4:12782921-12782940 | None:intergenic | 45.0% | |
| CTAAGAGCAGTAACAAGAGG+TGG | + | chr5_4:12783063-12783082 | None:intergenic | 45.0% | |
| AGAGGGTCGTAGAGAAAATC+AGG | + | chr5_4:12783099-12783118 | None:intergenic | 45.0% | |
| CTTTCACCAGGGCTAATATC+AGG | + | chr5_4:12783306-12783325 | None:intergenic | 45.0% | |
| CTGATATTAGCCCTGGTGAA+AGG | - | chr5_4:12783304-12783323 | Msa0838400:intron | 45.0% | |
| ACGTTCACGAGCTAGAAAAC+AGG | - | chr5_4:12783365-12783384 | Msa0838400:intron | 45.0% | |
| !! | CGTAATTCCACTTTTGGCGG+TGG | - | chr5_4:12782889-12782908 | Msa0838400:exon | 50.0% |
| GATAACACCACCGCCAAAAG+TGG | + | chr5_4:12782899-12782918 | None:intergenic | 50.0% | |
| AGCAGTAACAAGAGGTGGTG+TGG | + | chr5_4:12783058-12783077 | None:intergenic | 50.0% | |
| ! | GAAGCACCTGATATTAGCCC+TGG | - | chr5_4:12783297-12783316 | Msa0838400:intron | 50.0% |
| ! | TCAAGGAAGTCACGGTGTCA+CGG | - | chr5_4:12783489-12783508 | Msa0838400:intron | 50.0% |
| CAGCTATGGGAAGCAGAAAG+TGG | - | chr5_4:12784047-12784066 | Msa0838400:CDS | 50.0% | |
| CTATGGGAAGCAGAAAGTGG+TGG | - | chr5_4:12784050-12784069 | Msa0838400:CDS | 50.0% | |
| !! | CGTAATTCCACTTTTGGCGG+TGG | - | chr5_4:12782889-12782908 | Msa0838400:exon | 50.0% |
| GATAACACCACCGCCAAAAG+TGG | + | chr5_4:12782899-12782918 | None:intergenic | 50.0% | |
| AGCAGTAACAAGAGGTGGTG+TGG | + | chr5_4:12783058-12783077 | None:intergenic | 50.0% | |
| ! | GAAGCACCTGATATTAGCCC+TGG | - | chr5_4:12783297-12783316 | Msa0838400:intron | 50.0% |
| ! | TCAAGGAAGTCACGGTGTCA+CGG | - | chr5_4:12783489-12783508 | Msa0838400:intron | 50.0% |
| CAGCTATGGGAAGCAGAAAG+TGG | - | chr5_4:12784047-12784066 | Msa0838400:CDS | 50.0% | |
| CTATGGGAAGCAGAAAGTGG+TGG | - | chr5_4:12784050-12784069 | Msa0838400:CDS | 50.0% | |
| GTGGTGTGGTCGTAGAGCTA+GGG | + | chr5_4:12783044-12783063 | None:intergenic | 55.0% | |
| GTGGTGTGGTCGTAGAGCTA+GGG | + | chr5_4:12783044-12783063 | None:intergenic | 55.0% | |
| GGTGGTGTGGTCGTAGAGCT+AGG | + | chr5_4:12783045-12783064 | None:intergenic | 60.0% | |
| !! | AGGAAGTCACGGTGTCACGG+TGG | - | chr5_4:12783492-12783511 | Msa0838400:intron | 60.0% |
| GGTGGTGTGGTCGTAGAGCT+AGG | + | chr5_4:12783045-12783064 | None:intergenic | 60.0% | |
| !! | AGGAAGTCACGGTGTCACGG+TGG | - | chr5_4:12783492-12783511 | Msa0838400:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 12782814 | 12784204 | 12782814 | ID=Msa0838400;Name=Msa0838400 |
| chr5_4 | mRNA | 12782814 | 12784204 | 12782814 | ID=Msa0838400-mRNA-1;Parent=Msa0838400;Name=Msa0838400-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.33|1|1|1|3|86|231 |
| chr5_4 | exon | 12782814 | 12782968 | 12782814 | ID=Msa0838400-mRNA-1:exon:5646;Parent=Msa0838400-mRNA-1 |
| chr5_4 | exon | 12783142 | 12783219 | 12783142 | ID=Msa0838400-mRNA-1:exon:5645;Parent=Msa0838400-mRNA-1 |
| chr5_4 | exon | 12783656 | 12784204 | 12783656 | ID=Msa0838400-mRNA-1:exon:5644;Parent=Msa0838400-mRNA-1 |
| chr5_4 | CDS | 12783656 | 12784204 | 12783656 | ID=Msa0838400-mRNA-1:cds;Parent=Msa0838400-mRNA-1 |
| chr5_4 | CDS | 12783142 | 12783219 | 12783142 | ID=Msa0838400-mRNA-1:cds;Parent=Msa0838400-mRNA-1 |
| chr5_4 | CDS | 12782900 | 12782968 | 12782900 | ID=Msa0838400-mRNA-1:cds;Parent=Msa0838400-mRNA-1 |
| chr5_4 | three_prime_UTR | 12782814 | 12782899 | 12782814 | ID=Msa0838400-mRNA-1:three_prime_utr;Parent=Msa0838400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
