Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336620 | AES95190.2 | 86.822 | 258 | 22 | 3 | 1 | 257 | 1 | 247 | 4.38e-145 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336620 | sp|Q84JK2|FD_ARATH | 34.944 | 269 | 113 | 10 | 1 | 256 | 63 | 282 | 2.57e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336620 | G7JXL9 | 86.822 | 258 | 22 | 3 | 1 | 257 | 1 | 247 | 2.09e-145 | 416 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0669840 | Msa1336620 | 0.827840 | 1.252299e-54 | -8.615850e-47 |
| Msa0691160 | Msa1336620 | 0.825183 | 5.385840e-54 | -8.615850e-47 |
| Msa0712770 | Msa1336620 | 0.932512 | 7.623249e-95 | -8.615850e-47 |
| Msa0759090 | Msa1336620 | 0.924726 | 4.790508e-90 | -8.615850e-47 |
| Msa0770290 | Msa1336620 | 0.806268 | 8.931515e-50 | -8.615850e-47 |
| Msa0838400 | Msa1336620 | 0.931537 | 3.263933e-94 | -8.615850e-47 |
| Msa0124130 | Msa1336620 | 0.807117 | 5.910412e-50 | -8.615850e-47 |
| Msa0149140 | Msa1336620 | 0.809461 | 1.870929e-50 | -8.615850e-47 |
| Msa0176470 | Msa1336620 | 0.807545 | 4.796104e-50 | -8.615850e-47 |
| Msa1228190 | Msa1336620 | 0.809314 | 2.011609e-50 | -8.615850e-47 |
| Msa1294290 | Msa1336620 | 0.823896 | 1.082247e-53 | -8.615850e-47 |
| Msa1305510 | Msa1336620 | 0.819379 | 1.197675e-52 | -8.615850e-47 |
| Msa1336620 | Msa1420060 | 0.817355 | 3.442365e-52 | -8.615850e-47 |
| Msa1336620 | Msa1421550 | 0.813638 | 2.312924e-51 | -8.615850e-47 |
| Msa1336620 | Msa1431850 | 0.802144 | 6.448930e-49 | -8.615850e-47 |
| Msa1336620 | Msa1435480 | 0.802331 | 5.902188e-49 | -8.615850e-47 |
| Msa0406000 | Msa1336620 | 0.823902 | 1.078282e-53 | -8.615850e-47 |
| Msa0451400 | Msa1336620 | 0.833410 | 5.420012e-56 | -8.615850e-47 |
| Msa0469260 | Msa1336620 | 0.805033 | 1.622653e-49 | -8.615850e-47 |
| Msa0999300 | Msa1336620 | 0.827819 | 1.267428e-54 | -8.615850e-47 |
| Msa1006830 | Msa1336620 | 0.800007 | 1.763434e-48 | -8.615850e-47 |
| Msa1007870 | Msa1336620 | 0.813868 | 2.058646e-51 | -8.615850e-47 |
| Msa0314630 | Msa1336620 | 0.801460 | 8.909595e-49 | -8.615850e-47 |
| Msa0351770 | Msa1336620 | 0.805610 | 1.228630e-49 | -8.615850e-47 |
| Msa0359250 | Msa1336620 | 0.829937 | 3.891184e-55 | -8.615850e-47 |
| Msa1145020 | Msa1336620 | 0.800834 | 1.196437e-48 | -8.615850e-47 |
| Msa1201160 | Msa1336620 | 0.835931 | 1.258664e-56 | -8.615850e-47 |
| Msa0492190 | Msa1336620 | 0.804743 | 1.866166e-49 | -8.615850e-47 |
| Msa0515950 | Msa1336620 | 0.809890 | 1.513245e-50 | -8.615850e-47 |
| Msa0594090 | Msa1336620 | 0.804636 | 1.964148e-49 | -8.615850e-47 |
| Msa0867350 | Msa1336620 | 0.811229 | 7.773686e-51 | -8.615850e-47 |
| Msa0873190 | Msa1336620 | 0.808587 | 2.878649e-50 | -8.615850e-47 |
| Msa0898730 | Msa1336620 | 0.820241 | 7.610282e-53 | -8.615850e-47 |
| Msa0922750 | Msa1336620 | 0.818679 | 1.728803e-52 | -8.615850e-47 |
| Msa0929870 | Msa1336620 | 0.829194 | 5.901001e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336620 | MtrunA17_Chr5g0405951 | 86.822 | 258 | 22 | 3 | 1 | 257 | 1 | 247 | 4.03e-149 | 416 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336620 | AT4G35900.1 | 34.944 | 269 | 113 | 10 | 1 | 256 | 63 | 282 | 2.61e-25 | 101 |
| Msa1336620 | AT2G17770.2 | 31.538 | 260 | 106 | 7 | 1 | 256 | 1 | 192 | 9.30e-19 | 82.0 |
| Msa1336620 | AT4G35900.2 | 33.333 | 198 | 89 | 8 | 1 | 185 | 63 | 230 | 1.47e-13 | 68.9 |
Find 40 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAGTTCTTTCACTTGTTT+TGG | 0.208039 | tig0001300:-41132 | Msa1336620:CDS |
| ATTACGAGTACTCATTATAA+TGG | 0.298213 | tig0001300:+41521 | None:intergenic |
| AGTACTCGTAATTCCACTTT+TGG | 0.321768 | tig0001300:-41510 | Msa1336620:CDS |
| TTATAATGGGTCGTGTGTTT+TGG | 0.329596 | tig0001300:+41535 | None:intergenic |
| AATTAACCATGGAAGAAGTT+TGG | 0.329790 | tig0001300:-41587 | None:intergenic |
| GCAGAAAGTTCAATTATTGC+AGG | 0.372910 | tig0001300:-40604 | Msa1336620:CDS |
| CTCTTATTTCTCCTTTCACC+AGG | 0.381139 | tig0001300:+41078 | None:intergenic |
| CACCAATGTTGTGTTGTTGT+TGG | 0.389724 | tig0001300:+41220 | None:intergenic |
| AAACTAATTAATGTTACCCT+TGG | 0.412585 | tig0001300:-40269 | Msa1336620:three_prime_UTR |
| CTTTCACCAGGGCTAATATC+AGG | 0.413344 | tig0001300:+41090 | None:intergenic |
| AGAGGGTCGTAGAGAAAATC+AGG | 0.429767 | tig0001300:+41297 | None:intergenic |
| ATAAGAGGATGATCAAGAAT+CGG | 0.446318 | tig0001300:-41062 | Msa1336620:CDS |
| TGCTTGTTGTGTCTGATAAG+AGG | 0.458069 | tig0001300:+41279 | None:intergenic |
| ATGTATTATGACTTAATTTG+TGG | 0.461097 | tig0001300:-40240 | None:intergenic |
| TTACGAGTACTCATTATAAT+GGG | 0.471502 | tig0001300:+41522 | None:intergenic |
| GGTGGTGTGGTCGTAGAGCT+AGG | 0.478755 | tig0001300:+41351 | None:intergenic |
| GTCTTTCCAAACTTCTTCCA+TGG | 0.482645 | tig0001300:+41581 | None:intergenic |
| TAAGAGGATGATCAAGAATC+GGG | 0.505249 | tig0001300:-41061 | Msa1336620:CDS |
| GATAACACCACCGCCAAAAG+TGG | 0.506221 | tig0001300:+41497 | None:intergenic |
| TTTGGTCATTCAATGAAGAC+AGG | 0.517078 | tig0001300:+41553 | None:intergenic |
| GTCGAGTGAGAAAGTCTTGA+AGG | 0.517937 | tig0001300:+41475 | None:intergenic |
| TCATAATACATTTAAATCCA+AGG | 0.520857 | tig0001300:+40252 | None:intergenic |
| CTGATATTAGCCCTGGTGAA+AGG | 0.531306 | tig0001300:-41089 | Msa1336620:CDS |
| CATAATACATTTAAATCCAA+GGG | 0.568031 | tig0001300:+40253 | None:intergenic |
| ACACCCACATTCTGATCATA+CGG | 0.580440 | tig0001300:+41162 | None:intergenic |
| TTTGGTGGGTCTAAAGTAAG+GGG | 0.581231 | tig0001300:+41453 | None:intergenic |
| GCTTGTTGTGTCTGATAAGA+GGG | 0.581897 | tig0001300:+41280 | None:intergenic |
| GTGGTGTGGTCGTAGAGCTA+GGG | 0.588751 | tig0001300:+41352 | None:intergenic |
| CAGCTATGGGAAGCAGAAAG+TGG | 0.596986 | tig0001300:-40376 | Msa1336620:CDS |
| ACTTAGAAGACAGCAACAAG+AGG | 0.615687 | tig0001300:-40568 | Msa1336620:intron |
| CACCAACAACAACACAACAT+TGG | 0.617396 | tig0001300:-41222 | Msa1336620:CDS |
| TCTTATTTCTCCTTTCACCA+GGG | 0.617920 | tig0001300:+41079 | None:intergenic |
| AGCAGTAACAAGAGGTGGTG+TGG | 0.622993 | tig0001300:+41338 | None:intergenic |
| GAAGCACCTGATATTAGCCC+TGG | 0.631988 | tig0001300:-41096 | Msa1336620:CDS |
| AAACTAAGAGCAGTAACAAG+AGG | 0.641956 | tig0001300:+41330 | None:intergenic |
| CTAAGAGCAGTAACAAGAGG+TGG | 0.655914 | tig0001300:+41333 | None:intergenic |
| TCACCGTATGATCAGAATGT+GGG | 0.671767 | tig0001300:-41165 | Msa1336620:CDS |
| TTCACCGTATGATCAGAATG+TGG | 0.673365 | tig0001300:-41166 | Msa1336620:CDS |
| CTGGTGAAAGGAGAAATAAG+AGG | 0.693703 | tig0001300:-41077 | Msa1336620:CDS |
| CTATGGGAAGCAGAAAGTGG+TGG | 0.697914 | tig0001300:-40373 | Msa1336620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTGTTGTTTTTATTAA+TGG | - | tig0001300:41142-41161 | Msa1336620:CDS | 10.0% |
| !!! | AAAATTGTTGTTTTTATTAA+TGG | - | tig0001300:41142-41161 | Msa1336620:CDS | 10.0% |
| !! | AACATAAAATATTTATGATG+TGG | - | tig0001300:41019-41038 | Msa1336620:intron | 15.0% |
| !!! | TAAAAACAACAATTTTCTTT+TGG | + | tig0001300:41138-41157 | None:intergenic | 15.0% |
| !! | AACATAAAATATTTATGATG+TGG | - | tig0001300:41019-41038 | Msa1336620:intron | 15.0% |
| !!! | TAAAAACAACAATTTTCTTT+TGG | + | tig0001300:41138-41157 | None:intergenic | 15.0% |
| !! | CATACACTTAATTAATATTG+TGG | - | tig0001300:40947-40966 | Msa1336620:intron | 20.0% |
| !! | TTAATTAATATTGTGGTGAA+TGG | - | tig0001300:40954-40973 | Msa1336620:intron | 20.0% |
| !! | TAATTAATATTGTGGTGAAT+GGG | - | tig0001300:40955-40974 | Msa1336620:intron | 20.0% |
| !!! | TTACATGTTTTATTCTCAAA+AGG | + | tig0001300:41511-41530 | None:intergenic | 20.0% |
| !! | CATAATACATTTAAATCCAA+GGG | + | tig0001300:41570-41589 | None:intergenic | 20.0% |
| !! | TCATAATACATTTAAATCCA+AGG | + | tig0001300:41571-41590 | None:intergenic | 20.0% |
| !! | CATACACTTAATTAATATTG+TGG | - | tig0001300:40947-40966 | Msa1336620:intron | 20.0% |
| !! | TTAATTAATATTGTGGTGAA+TGG | - | tig0001300:40954-40973 | Msa1336620:intron | 20.0% |
| !! | TAATTAATATTGTGGTGAAT+GGG | - | tig0001300:40955-40974 | Msa1336620:intron | 20.0% |
| !!! | TTACATGTTTTATTCTCAAA+AGG | + | tig0001300:41511-41530 | None:intergenic | 20.0% |
| !! | CATAATACATTTAAATCCAA+GGG | + | tig0001300:41570-41589 | None:intergenic | 20.0% |
| !! | TCATAATACATTTAAATCCA+AGG | + | tig0001300:41571-41590 | None:intergenic | 20.0% |
| ! | TTACGAGTACTCATTATAAT+GGG | + | tig0001300:40301-40320 | None:intergenic | 25.0% |
| ! | ATTACGAGTACTCATTATAA+TGG | + | tig0001300:40302-40321 | None:intergenic | 25.0% |
| !!! | AATAATCTAAGCTTTTTGGT+GGG | + | tig0001300:40384-40403 | None:intergenic | 25.0% |
| !! | GAAGAATAATCTAAGCTTTT+TGG | + | tig0001300:40388-40407 | None:intergenic | 25.0% |
| ! | CTCTAAATTTAGTGTATGTT+AGG | - | tig0001300:40841-40860 | Msa1336620:intron | 25.0% |
| ! | AAATTTAGTGTATGTTAGGT+TGG | - | tig0001300:40845-40864 | Msa1336620:intron | 25.0% |
| !! | GATGATTTTGTTAAAACTCA+AGG | - | tig0001300:40867-40886 | Msa1336620:intron | 25.0% |
| ! | AATTAATATTGTGGTGAATG+GGG | - | tig0001300:40956-40975 | Msa1336620:intron | 25.0% |
| !! | AAGAGGTACATTATTGTATT+TGG | - | tig0001300:41269-41288 | Msa1336620:CDS | 25.0% |
| ! | AAACTAATTAATGTTACCCT+TGG | - | tig0001300:41551-41570 | Msa1336620:CDS | 25.0% |
| ! | TTACGAGTACTCATTATAAT+GGG | + | tig0001300:40301-40320 | None:intergenic | 25.0% |
| ! | ATTACGAGTACTCATTATAA+TGG | + | tig0001300:40302-40321 | None:intergenic | 25.0% |
| !!! | AATAATCTAAGCTTTTTGGT+GGG | + | tig0001300:40384-40403 | None:intergenic | 25.0% |
| !! | GAAGAATAATCTAAGCTTTT+TGG | + | tig0001300:40388-40407 | None:intergenic | 25.0% |
| ! | CTCTAAATTTAGTGTATGTT+AGG | - | tig0001300:40841-40860 | Msa1336620:intron | 25.0% |
| ! | AAATTTAGTGTATGTTAGGT+TGG | - | tig0001300:40845-40864 | Msa1336620:intron | 25.0% |
| !! | GATGATTTTGTTAAAACTCA+AGG | - | tig0001300:40867-40886 | Msa1336620:intron | 25.0% |
| ! | AATTAATATTGTGGTGAATG+GGG | - | tig0001300:40956-40975 | Msa1336620:intron | 25.0% |
| !! | AAGAGGTACATTATTGTATT+TGG | - | tig0001300:41269-41288 | Msa1336620:CDS | 25.0% |
| ! | AAACTAATTAATGTTACCCT+TGG | - | tig0001300:41551-41570 | Msa1336620:CDS | 25.0% |
| ! | GAATAATCTAAGCTTTTTGG+TGG | + | tig0001300:40385-40404 | None:intergenic | 30.0% |
| !!! | TCTAGTTCTTTCACTTGTTT+TGG | - | tig0001300:40688-40707 | Msa1336620:CDS | 30.0% |
| !!! | ACTTGTTTTGGAAAGAGATT+TGG | - | tig0001300:40700-40719 | Msa1336620:CDS | 30.0% |
| ATAAGAGGATGATCAAGAAT+CGG | - | tig0001300:40758-40777 | Msa1336620:intron | 30.0% | |
| ! | TAGATTGCTGATGATTTTGA+CGG | + | tig0001300:40925-40944 | None:intergenic | 30.0% |
| AAAGACATGTTGCAAATGTT+AGG | - | tig0001300:41076-41095 | Msa1336620:CDS | 30.0% | |
| !!! | GGGCATTATTGTTTTTTGTA+GGG | - | tig0001300:41101-41120 | Msa1336620:CDS | 30.0% |
| !!! | GATTCATCTACTTTTTTGTG+TGG | - | tig0001300:41164-41183 | Msa1336620:CDS | 30.0% |
| !!! | CTTTTTTGTGTGGTTATTTC+AGG | - | tig0001300:41174-41193 | Msa1336620:CDS | 30.0% |
| !! | TGGTAGTAGGATTGATTTTA+GGG | - | tig0001300:41398-41417 | Msa1336620:CDS | 30.0% |
| ! | GAATAATCTAAGCTTTTTGG+TGG | + | tig0001300:40385-40404 | None:intergenic | 30.0% |
| !!! | TCTAGTTCTTTCACTTGTTT+TGG | - | tig0001300:40688-40707 | Msa1336620:CDS | 30.0% |
| !!! | ACTTGTTTTGGAAAGAGATT+TGG | - | tig0001300:40700-40719 | Msa1336620:CDS | 30.0% |
| ATAAGAGGATGATCAAGAAT+CGG | - | tig0001300:40758-40777 | Msa1336620:intron | 30.0% | |
| ! | TAGATTGCTGATGATTTTGA+CGG | + | tig0001300:40925-40944 | None:intergenic | 30.0% |
| AAAGACATGTTGCAAATGTT+AGG | - | tig0001300:41076-41095 | Msa1336620:CDS | 30.0% | |
| !!! | GGGCATTATTGTTTTTTGTA+GGG | - | tig0001300:41101-41120 | Msa1336620:CDS | 30.0% |
| !!! | GATTCATCTACTTTTTTGTG+TGG | - | tig0001300:41164-41183 | Msa1336620:CDS | 30.0% |
| !!! | CTTTTTTGTGTGGTTATTTC+AGG | - | tig0001300:41174-41193 | Msa1336620:CDS | 30.0% |
| !! | TGGTAGTAGGATTGATTTTA+GGG | - | tig0001300:41398-41417 | Msa1336620:CDS | 30.0% |
| TTTGGTCATTCAATGAAGAC+AGG | + | tig0001300:40270-40289 | None:intergenic | 35.0% | |
| !!! | TTATAATGGGTCGTGTGTTT+TGG | + | tig0001300:40288-40307 | None:intergenic | 35.0% |
| ! | AGTACTCGTAATTCCACTTT+TGG | - | tig0001300:40310-40329 | Msa1336620:exon | 35.0% |
| !! | TTTTGGTGGGTCTAAAGTAA+GGG | + | tig0001300:40371-40390 | None:intergenic | 35.0% |
| !! | TTTTTGGTGGGTCTAAAGTA+AGG | + | tig0001300:40372-40391 | None:intergenic | 35.0% |
| AAACTAAGAGCAGTAACAAG+AGG | + | tig0001300:40493-40512 | None:intergenic | 35.0% | |
| ! | TCTTATTTCTCCTTTCACCA+GGG | + | tig0001300:40744-40763 | None:intergenic | 35.0% |
| TAAGAGGATGATCAAGAATC+GGG | - | tig0001300:40759-40778 | Msa1336620:intron | 35.0% | |
| GTTAAAACTCAAGGAAGTCA+CGG | - | tig0001300:40876-40895 | Msa1336620:intron | 35.0% | |
| !! | TGATGATTTTGACGGAATCA+CGG | + | tig0001300:40917-40936 | None:intergenic | 35.0% |
| ACATGTTGCAAATGTTAGGT+GGG | - | tig0001300:41080-41099 | Msa1336620:CDS | 35.0% | |
| !!! | GGGGCATTATTGTTTTTTGT+AGG | - | tig0001300:41100-41119 | Msa1336620:CDS | 35.0% |
| GCAGAAAGTTCAATTATTGC+AGG | - | tig0001300:41216-41235 | Msa1336620:CDS | 35.0% | |
| CTTTCAATTCCACATAGTAG+TGG | - | tig0001300:41378-41397 | Msa1336620:CDS | 35.0% | |
| !! | GTGGTAGTAGGATTGATTTT+AGG | - | tig0001300:41397-41416 | Msa1336620:CDS | 35.0% |
| TTTGGTCATTCAATGAAGAC+AGG | + | tig0001300:40270-40289 | None:intergenic | 35.0% | |
| !!! | TTATAATGGGTCGTGTGTTT+TGG | + | tig0001300:40288-40307 | None:intergenic | 35.0% |
| ! | AGTACTCGTAATTCCACTTT+TGG | - | tig0001300:40310-40329 | Msa1336620:exon | 35.0% |
| !! | TTTTGGTGGGTCTAAAGTAA+GGG | + | tig0001300:40371-40390 | None:intergenic | 35.0% |
| !! | TTTTTGGTGGGTCTAAAGTA+AGG | + | tig0001300:40372-40391 | None:intergenic | 35.0% |
| AAACTAAGAGCAGTAACAAG+AGG | + | tig0001300:40493-40512 | None:intergenic | 35.0% | |
| ! | TCTTATTTCTCCTTTCACCA+GGG | + | tig0001300:40744-40763 | None:intergenic | 35.0% |
| TAAGAGGATGATCAAGAATC+GGG | - | tig0001300:40759-40778 | Msa1336620:intron | 35.0% | |
| GTTAAAACTCAAGGAAGTCA+CGG | - | tig0001300:40876-40895 | Msa1336620:intron | 35.0% | |
| !! | TGATGATTTTGACGGAATCA+CGG | + | tig0001300:40917-40936 | None:intergenic | 35.0% |
| ACATGTTGCAAATGTTAGGT+GGG | - | tig0001300:41080-41099 | Msa1336620:CDS | 35.0% | |
| !!! | GGGGCATTATTGTTTTTTGT+AGG | - | tig0001300:41100-41119 | Msa1336620:CDS | 35.0% |
| GCAGAAAGTTCAATTATTGC+AGG | - | tig0001300:41216-41235 | Msa1336620:CDS | 35.0% | |
| CTTTCAATTCCACATAGTAG+TGG | - | tig0001300:41378-41397 | Msa1336620:CDS | 35.0% | |
| !! | GTGGTAGTAGGATTGATTTT+AGG | - | tig0001300:41397-41416 | Msa1336620:CDS | 35.0% |
| !! | ACTCGTAATTCCACTTTTGG+CGG | - | tig0001300:40313-40332 | Msa1336620:exon | 40.0% |
| ! | TTTGGTGGGTCTAAAGTAAG+GGG | + | tig0001300:40370-40389 | None:intergenic | 40.0% |
| !! | GCTTGTTGTGTCTGATAAGA+GGG | + | tig0001300:40543-40562 | None:intergenic | 40.0% |
| !! | TGCTTGTTGTGTCTGATAAG+AGG | + | tig0001300:40544-40563 | None:intergenic | 40.0% |
| CACCAACAACAACACAACAT+TGG | - | tig0001300:40598-40617 | Msa1336620:CDS | 40.0% | |
| ! | CACCAATGTTGTGTTGTTGT+TGG | + | tig0001300:40603-40622 | None:intergenic | 40.0% |
| TTCACCGTATGATCAGAATG+TGG | - | tig0001300:40654-40673 | Msa1336620:CDS | 40.0% | |
| TCACCGTATGATCAGAATGT+GGG | - | tig0001300:40655-40674 | Msa1336620:CDS | 40.0% | |
| ACACCCACATTCTGATCATA+CGG | + | tig0001300:40661-40680 | None:intergenic | 40.0% | |
| ! | CTCTTATTTCTCCTTTCACC+AGG | + | tig0001300:40745-40764 | None:intergenic | 40.0% |
| CTGGTGAAAGGAGAAATAAG+AGG | - | tig0001300:40743-40762 | Msa1336620:intron | 40.0% | |
| GACATGTTGCAAATGTTAGG+TGG | - | tig0001300:41079-41098 | Msa1336620:CDS | 40.0% | |
| CATGTTGCAAATGTTAGGTG+GGG | - | tig0001300:41081-41100 | Msa1336620:CDS | 40.0% | |
| ACTTAGAAGACAGCAACAAG+AGG | - | tig0001300:41252-41271 | Msa1336620:CDS | 40.0% | |
| TTCCACATAGTAGTGGTAGT+AGG | - | tig0001300:41385-41404 | Msa1336620:CDS | 40.0% | |
| ATCCTACTACCACTACTATG+TGG | + | tig0001300:41390-41409 | None:intergenic | 40.0% | |
| TGTCAATGTGAATGCAGCTA+TGG | - | tig0001300:41430-41449 | Msa1336620:CDS | 40.0% | |
| GTCAATGTGAATGCAGCTAT+GGG | - | tig0001300:41431-41450 | Msa1336620:CDS | 40.0% | |
| !! | ACTCGTAATTCCACTTTTGG+CGG | - | tig0001300:40313-40332 | Msa1336620:exon | 40.0% |
| ! | TTTGGTGGGTCTAAAGTAAG+GGG | + | tig0001300:40370-40389 | None:intergenic | 40.0% |
| !! | GCTTGTTGTGTCTGATAAGA+GGG | + | tig0001300:40543-40562 | None:intergenic | 40.0% |
| !! | TGCTTGTTGTGTCTGATAAG+AGG | + | tig0001300:40544-40563 | None:intergenic | 40.0% |
| CACCAACAACAACACAACAT+TGG | - | tig0001300:40598-40617 | Msa1336620:CDS | 40.0% | |
| ! | CACCAATGTTGTGTTGTTGT+TGG | + | tig0001300:40603-40622 | None:intergenic | 40.0% |
| TTCACCGTATGATCAGAATG+TGG | - | tig0001300:40654-40673 | Msa1336620:CDS | 40.0% | |
| TCACCGTATGATCAGAATGT+GGG | - | tig0001300:40655-40674 | Msa1336620:CDS | 40.0% | |
| ACACCCACATTCTGATCATA+CGG | + | tig0001300:40661-40680 | None:intergenic | 40.0% | |
| ! | CTCTTATTTCTCCTTTCACC+AGG | + | tig0001300:40745-40764 | None:intergenic | 40.0% |
| CTGGTGAAAGGAGAAATAAG+AGG | - | tig0001300:40743-40762 | Msa1336620:intron | 40.0% | |
| GACATGTTGCAAATGTTAGG+TGG | - | tig0001300:41079-41098 | Msa1336620:CDS | 40.0% | |
| CATGTTGCAAATGTTAGGTG+GGG | - | tig0001300:41081-41100 | Msa1336620:CDS | 40.0% | |
| ACTTAGAAGACAGCAACAAG+AGG | - | tig0001300:41252-41271 | Msa1336620:CDS | 40.0% | |
| TTCCACATAGTAGTGGTAGT+AGG | - | tig0001300:41385-41404 | Msa1336620:CDS | 40.0% | |
| ATCCTACTACCACTACTATG+TGG | + | tig0001300:41390-41409 | None:intergenic | 40.0% | |
| TGTCAATGTGAATGCAGCTA+TGG | - | tig0001300:41430-41449 | Msa1336620:CDS | 40.0% | |
| GTCAATGTGAATGCAGCTAT+GGG | - | tig0001300:41431-41450 | Msa1336620:CDS | 40.0% | |
| GTCGAGTGAGAAAGTCTTGA+AGG | + | tig0001300:40348-40367 | None:intergenic | 45.0% | |
| CTAAGAGCAGTAACAAGAGG+TGG | + | tig0001300:40490-40509 | None:intergenic | 45.0% | |
| AGAGGGTCGTAGAGAAAATC+AGG | + | tig0001300:40526-40545 | None:intergenic | 45.0% | |
| CTTTCACCAGGGCTAATATC+AGG | + | tig0001300:40733-40752 | None:intergenic | 45.0% | |
| CTGATATTAGCCCTGGTGAA+AGG | - | tig0001300:40731-40750 | Msa1336620:intron | 45.0% | |
| ACGTTCACGAGCTAGAAAAC+AGG | - | tig0001300:40792-40811 | Msa1336620:intron | 45.0% | |
| GTCGAGTGAGAAAGTCTTGA+AGG | + | tig0001300:40348-40367 | None:intergenic | 45.0% | |
| CTAAGAGCAGTAACAAGAGG+TGG | + | tig0001300:40490-40509 | None:intergenic | 45.0% | |
| AGAGGGTCGTAGAGAAAATC+AGG | + | tig0001300:40526-40545 | None:intergenic | 45.0% | |
| CTTTCACCAGGGCTAATATC+AGG | + | tig0001300:40733-40752 | None:intergenic | 45.0% | |
| CTGATATTAGCCCTGGTGAA+AGG | - | tig0001300:40731-40750 | Msa1336620:intron | 45.0% | |
| ACGTTCACGAGCTAGAAAAC+AGG | - | tig0001300:40792-40811 | Msa1336620:intron | 45.0% | |
| !! | CGTAATTCCACTTTTGGCGG+TGG | - | tig0001300:40316-40335 | Msa1336620:exon | 50.0% |
| GATAACACCACCGCCAAAAG+TGG | + | tig0001300:40326-40345 | None:intergenic | 50.0% | |
| AGCAGTAACAAGAGGTGGTG+TGG | + | tig0001300:40485-40504 | None:intergenic | 50.0% | |
| ! | GAAGCACCTGATATTAGCCC+TGG | - | tig0001300:40724-40743 | Msa1336620:intron | 50.0% |
| ! | TCAAGGAAGTCACGGTGTCA+CGG | - | tig0001300:40884-40903 | Msa1336620:intron | 50.0% |
| CAGCTATGGGAAGCAGAAAG+TGG | - | tig0001300:41444-41463 | Msa1336620:CDS | 50.0% | |
| CTATGGGAAGCAGAAAGTGG+TGG | - | tig0001300:41447-41466 | Msa1336620:CDS | 50.0% | |
| !! | CGTAATTCCACTTTTGGCGG+TGG | - | tig0001300:40316-40335 | Msa1336620:exon | 50.0% |
| GATAACACCACCGCCAAAAG+TGG | + | tig0001300:40326-40345 | None:intergenic | 50.0% | |
| AGCAGTAACAAGAGGTGGTG+TGG | + | tig0001300:40485-40504 | None:intergenic | 50.0% | |
| ! | GAAGCACCTGATATTAGCCC+TGG | - | tig0001300:40724-40743 | Msa1336620:intron | 50.0% |
| ! | TCAAGGAAGTCACGGTGTCA+CGG | - | tig0001300:40884-40903 | Msa1336620:intron | 50.0% |
| CAGCTATGGGAAGCAGAAAG+TGG | - | tig0001300:41444-41463 | Msa1336620:CDS | 50.0% | |
| CTATGGGAAGCAGAAAGTGG+TGG | - | tig0001300:41447-41466 | Msa1336620:CDS | 50.0% | |
| GTGGTGTGGTCGTAGAGCTA+GGG | + | tig0001300:40471-40490 | None:intergenic | 55.0% | |
| GTGGTGTGGTCGTAGAGCTA+GGG | + | tig0001300:40471-40490 | None:intergenic | 55.0% | |
| GGTGGTGTGGTCGTAGAGCT+AGG | + | tig0001300:40472-40491 | None:intergenic | 60.0% | |
| !! | AGGAAGTCACGGTGTCACGG+TGG | - | tig0001300:40887-40906 | Msa1336620:intron | 60.0% |
| GGTGGTGTGGTCGTAGAGCT+AGG | + | tig0001300:40472-40491 | None:intergenic | 60.0% | |
| !! | AGGAAGTCACGGTGTCACGG+TGG | - | tig0001300:40887-40906 | Msa1336620:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0001300 | gene | 40241 | 41601 | 40241 | ID=Msa1336620;Name=Msa1336620 |
| tig0001300 | mRNA | 40241 | 41601 | 40241 | ID=Msa1336620-mRNA-1;Parent=Msa1336620;Name=Msa1336620-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.5|0.33|1|1|1|3|86|257 |
| tig0001300 | exon | 40241 | 40395 | 40241 | ID=Msa1336620-mRNA-1:exon:790;Parent=Msa1336620-mRNA-1 |
| tig0001300 | exon | 40569 | 40720 | 40569 | ID=Msa1336620-mRNA-1:exon:789;Parent=Msa1336620-mRNA-1 |
| tig0001300 | exon | 41049 | 41601 | 41049 | ID=Msa1336620-mRNA-1:exon:788;Parent=Msa1336620-mRNA-1 |
| tig0001300 | CDS | 41049 | 41601 | 41049 | ID=Msa1336620-mRNA-1:cds;Parent=Msa1336620-mRNA-1 |
| tig0001300 | CDS | 40569 | 40720 | 40569 | ID=Msa1336620-mRNA-1:cds;Parent=Msa1336620-mRNA-1 |
| tig0001300 | CDS | 40327 | 40395 | 40327 | ID=Msa1336620-mRNA-1:cds;Parent=Msa1336620-mRNA-1 |
| tig0001300 | three_prime_UTR | 40241 | 40326 | 40241 | ID=Msa1336620-mRNA-1:three_prime_utr;Parent=Msa1336620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
