Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712770 | XP_039690540.1 | 90.377 | 239 | 11 | 2 | 1 | 231 | 1 | 235 | 3.97e-142 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712770 | sp|Q84JK2|FD_ARATH | 36.255 | 251 | 108 | 10 | 1 | 230 | 63 | 282 | 7.02e-25 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712770 | G7JXL9 | 86.056 | 251 | 11 | 2 | 1 | 231 | 1 | 247 | 1.41e-140 | 402 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0691160 | Msa0712770 | 0.821703 | 3.506140e-53 | -8.615850e-47 |
| Msa0712770 | Msa0759090 | 0.902616 | 8.080509e-79 | -8.615850e-47 |
| Msa0712770 | Msa0838400 | 0.941199 | 6.300321e-101 | -8.615850e-47 |
| Msa0712770 | Msa1336620 | 0.932512 | 7.623249e-95 | -8.615850e-47 |
| Msa0712770 | Msa1420060 | 0.800596 | 1.338070e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712770 | MtrunA17_Chr5g0405951 | 86.056 | 251 | 11 | 2 | 1 | 231 | 1 | 247 | 2.72e-144 | 402 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712770 | AT4G35900.1 | 36.255 | 251 | 108 | 10 | 1 | 230 | 63 | 282 | 7.13e-26 | 102 |
| Msa0712770 | AT2G17770.2 | 32.645 | 242 | 101 | 7 | 1 | 230 | 1 | 192 | 5.46e-19 | 82.0 |
| Msa0712770 | AT4G35900.2 | 32.039 | 206 | 97 | 8 | 1 | 193 | 63 | 238 | 1.91e-13 | 67.8 |
Find 40 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAGTTCTTTCACTTGTTT+TGG | 0.208039 | 5_1:-4571820 | Msa0712770:CDS |
| ATTACGAGTACTCATTATAA+TGG | 0.298213 | 5_1:+4572209 | None:intergenic |
| AGTACTCGTAATTCCACTTT+TGG | 0.321768 | 5_1:-4572198 | Msa0712770:CDS |
| TTATAATGGGTCGTGTGTTT+TGG | 0.329596 | 5_1:+4572223 | None:intergenic |
| AATTAACCATGGAAGAAGTT+TGG | 0.329790 | 5_1:-4572275 | None:intergenic |
| GCAGAAAGTTCAATTATTGC+AGG | 0.372910 | 5_1:-4571270 | Msa0712770:CDS |
| CTCTTATTTCTCCTTTCACC+AGG | 0.381139 | 5_1:+4571766 | None:intergenic |
| CACCAATGTTGTGTTGTTGT+TGG | 0.389724 | 5_1:+4571908 | None:intergenic |
| AAACTAATTAATGTTACCCT+TGG | 0.412585 | 5_1:-4570951 | Msa0712770:three_prime_UTR |
| CTTTCACCAGGGCTAATATC+AGG | 0.413344 | 5_1:+4571778 | None:intergenic |
| AGAGGGTCGTAGAGAAAATC+AGG | 0.429767 | 5_1:+4571985 | None:intergenic |
| ATAAGAGGATGATCAAGAAT+CGG | 0.446318 | 5_1:-4571750 | Msa0712770:CDS |
| TGCTTGTTGTGTCTGATAAG+AGG | 0.458069 | 5_1:+4571967 | None:intergenic |
| ATGTATTATGACTTAATTTG+TGG | 0.461097 | 5_1:-4570922 | None:intergenic |
| TTACGAGTACTCATTATAAT+GGG | 0.471502 | 5_1:+4572210 | None:intergenic |
| GGTGGTGTGGTCGTAGAGCT+AGG | 0.478755 | 5_1:+4572039 | None:intergenic |
| GTCTTTCCAAACTTCTTCCA+TGG | 0.482645 | 5_1:+4572269 | None:intergenic |
| TAAGAGGATGATCAAGAATC+GGG | 0.505249 | 5_1:-4571749 | Msa0712770:CDS |
| GATAACACCACCGCCAAAAG+TGG | 0.506221 | 5_1:+4572185 | None:intergenic |
| TTTGGTCATTCAATGAAGAC+AGG | 0.517078 | 5_1:+4572241 | None:intergenic |
| GTCGAGTGAGAAAGTCTTGA+AGG | 0.517937 | 5_1:+4572163 | None:intergenic |
| TCATAATACATTTAAATCCA+AGG | 0.520857 | 5_1:+4570934 | None:intergenic |
| CTGATATTAGCCCTGGTGAA+AGG | 0.531306 | 5_1:-4571777 | Msa0712770:CDS |
| CATAATACATTTAAATCCAA+GGG | 0.568031 | 5_1:+4570935 | None:intergenic |
| ACACCCACATTCTGATCATA+CGG | 0.580440 | 5_1:+4571850 | None:intergenic |
| TTTGGTGGGTCTAAAGTAAG+GGG | 0.581231 | 5_1:+4572141 | None:intergenic |
| GCTTGTTGTGTCTGATAAGA+GGG | 0.581897 | 5_1:+4571968 | None:intergenic |
| GTGGTGTGGTCGTAGAGCTA+GGG | 0.588751 | 5_1:+4572040 | None:intergenic |
| CAGCTATGGGAAGCAGAAAG+TGG | 0.596986 | 5_1:-4571058 | Msa0712770:CDS |
| ACTTAGAAGACAGCAACAAG+AGG | 0.615687 | 5_1:-4571234 | Msa0712770:intron |
| CACCAACAACAACACAACAT+TGG | 0.617396 | 5_1:-4571910 | Msa0712770:CDS |
| TCTTATTTCTCCTTTCACCA+GGG | 0.617920 | 5_1:+4571767 | None:intergenic |
| AGCAGTAACAAGAGGTGGTG+TGG | 0.622993 | 5_1:+4572026 | None:intergenic |
| GAAGCACCTGATATTAGCCC+TGG | 0.631988 | 5_1:-4571784 | Msa0712770:CDS |
| AAACTAAGAGCAGTAACAAG+AGG | 0.641956 | 5_1:+4572018 | None:intergenic |
| CTAAGAGCAGTAACAAGAGG+TGG | 0.655914 | 5_1:+4572021 | None:intergenic |
| TCACCGTATGATCAGAATGT+GGG | 0.671767 | 5_1:-4571853 | Msa0712770:CDS |
| TTCACCGTATGATCAGAATG+TGG | 0.673365 | 5_1:-4571854 | Msa0712770:CDS |
| CTGGTGAAAGGAGAAATAAG+AGG | 0.693703 | 5_1:-4571765 | Msa0712770:CDS |
| CTATGGGAAGCAGAAAGTGG+TGG | 0.697914 | 5_1:-4571055 | Msa0712770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTGTTGTTTTTATTAA+TGG | - | chr5_1:4571846-4571865 | Msa0712770:CDS | 10.0% |
| !!! | AAAATTGTTGTTTTTATTAA+TGG | - | chr5_1:4571846-4571865 | Msa0712770:CDS | 10.0% |
| !! | AACATAAAATATTTATGATG+TGG | - | chr5_1:4571723-4571742 | Msa0712770:intron | 15.0% |
| !!! | TAAAAACAACAATTTTCTTT+TGG | + | chr5_1:4571842-4571861 | None:intergenic | 15.0% |
| !! | AACATAAAATATTTATGATG+TGG | - | chr5_1:4571723-4571742 | Msa0712770:intron | 15.0% |
| !!! | TAAAAACAACAATTTTCTTT+TGG | + | chr5_1:4571842-4571861 | None:intergenic | 15.0% |
| !! | CATACACTTAATTAATATTG+TGG | - | chr5_1:4571653-4571672 | Msa0712770:intron | 20.0% |
| !! | TTAATTAATATTGTGGTGAA+TGG | - | chr5_1:4571660-4571679 | Msa0712770:intron | 20.0% |
| !! | TAATTAATATTGTGGTGAAT+GGG | - | chr5_1:4571661-4571680 | Msa0712770:intron | 20.0% |
| !! | CATAATACATTTAAATCCAA+GGG | + | chr5_1:4572258-4572277 | None:intergenic | 20.0% |
| !! | TCATAATACATTTAAATCCA+AGG | + | chr5_1:4572259-4572278 | None:intergenic | 20.0% |
| !! | CATACACTTAATTAATATTG+TGG | - | chr5_1:4571653-4571672 | Msa0712770:intron | 20.0% |
| !! | TTAATTAATATTGTGGTGAA+TGG | - | chr5_1:4571660-4571679 | Msa0712770:intron | 20.0% |
| !! | TAATTAATATTGTGGTGAAT+GGG | - | chr5_1:4571661-4571680 | Msa0712770:intron | 20.0% |
| !! | CATAATACATTTAAATCCAA+GGG | + | chr5_1:4572258-4572277 | None:intergenic | 20.0% |
| !! | TCATAATACATTTAAATCCA+AGG | + | chr5_1:4572259-4572278 | None:intergenic | 20.0% |
| ! | TTACGAGTACTCATTATAAT+GGG | + | chr5_1:4570983-4571002 | None:intergenic | 25.0% |
| ! | ATTACGAGTACTCATTATAA+TGG | + | chr5_1:4570984-4571003 | None:intergenic | 25.0% |
| !!! | AATAATCTAAGCTTTTTGGT+GGG | + | chr5_1:4571066-4571085 | None:intergenic | 25.0% |
| !! | GAAGAATAATCTAAGCTTTT+TGG | + | chr5_1:4571070-4571089 | None:intergenic | 25.0% |
| ! | CTCAAAATTTAGTGTATGTT+AGG | - | chr5_1:4571523-4571542 | Msa0712770:intron | 25.0% |
| ! | AAATTTAGTGTATGTTAGGT+TGG | - | chr5_1:4571527-4571546 | Msa0712770:intron | 25.0% |
| ! | AATTAATATTGTGGTGAATG+GGG | - | chr5_1:4571662-4571681 | Msa0712770:intron | 25.0% |
| !! | AAGAGGTACATTATTGTATT+TGG | - | chr5_1:4571973-4571992 | Msa0712770:CDS | 25.0% |
| !!! | TTACATGTTTTGTTCTCAAA+AGG | + | chr5_1:4572199-4572218 | None:intergenic | 25.0% |
| ! | AAACTAATTAATGTTACCCT+TGG | - | chr5_1:4572239-4572258 | Msa0712770:CDS | 25.0% |
| ! | TTACGAGTACTCATTATAAT+GGG | + | chr5_1:4570983-4571002 | None:intergenic | 25.0% |
| ! | ATTACGAGTACTCATTATAA+TGG | + | chr5_1:4570984-4571003 | None:intergenic | 25.0% |
| !!! | AATAATCTAAGCTTTTTGGT+GGG | + | chr5_1:4571066-4571085 | None:intergenic | 25.0% |
| !! | GAAGAATAATCTAAGCTTTT+TGG | + | chr5_1:4571070-4571089 | None:intergenic | 25.0% |
| ! | CTCAAAATTTAGTGTATGTT+AGG | - | chr5_1:4571523-4571542 | Msa0712770:intron | 25.0% |
| ! | AAATTTAGTGTATGTTAGGT+TGG | - | chr5_1:4571527-4571546 | Msa0712770:intron | 25.0% |
| ! | AATTAATATTGTGGTGAATG+GGG | - | chr5_1:4571662-4571681 | Msa0712770:intron | 25.0% |
| !! | AAGAGGTACATTATTGTATT+TGG | - | chr5_1:4571973-4571992 | Msa0712770:CDS | 25.0% |
| !!! | TTACATGTTTTGTTCTCAAA+AGG | + | chr5_1:4572199-4572218 | None:intergenic | 25.0% |
| ! | AAACTAATTAATGTTACCCT+TGG | - | chr5_1:4572239-4572258 | Msa0712770:CDS | 25.0% |
| ! | GAATAATCTAAGCTTTTTGG+TGG | + | chr5_1:4571067-4571086 | None:intergenic | 30.0% |
| !!! | TCTAGTTCTTTCACTTGTTT+TGG | - | chr5_1:4571370-4571389 | Msa0712770:intron | 30.0% |
| !!! | ACTTGTTTTGGAAAGAGATT+TGG | - | chr5_1:4571382-4571401 | Msa0712770:intron | 30.0% |
| ATAAGAGGATGATCAAGAAT+CGG | - | chr5_1:4571440-4571459 | Msa0712770:intron | 30.0% | |
| !! | CTTGAGTTTTAACAGAATCA+CGG | + | chr5_1:4571583-4571602 | None:intergenic | 30.0% |
| ! | TAGATTGCTGATGATTTTGA+CGG | + | chr5_1:4571631-4571650 | None:intergenic | 30.0% |
| AAAGACATGTTGCAAATGTT+AGG | - | chr5_1:4571780-4571799 | Msa0712770:CDS | 30.0% | |
| !!! | GGGCATTATTGTTTTTTGTA+GGG | - | chr5_1:4571805-4571824 | Msa0712770:CDS | 30.0% |
| !!! | GATTCATCTACTTTTTTGTG+TGG | - | chr5_1:4571868-4571887 | Msa0712770:CDS | 30.0% |
| !!! | CTTTTTTGTGTGGTTATTTC+AGG | - | chr5_1:4571878-4571897 | Msa0712770:CDS | 30.0% |
| !! | TGGTAGTAGGATTGATTTTA+GGG | - | chr5_1:4572086-4572105 | Msa0712770:CDS | 30.0% |
| ! | GAATAATCTAAGCTTTTTGG+TGG | + | chr5_1:4571067-4571086 | None:intergenic | 30.0% |
| !!! | TCTAGTTCTTTCACTTGTTT+TGG | - | chr5_1:4571370-4571389 | Msa0712770:intron | 30.0% |
| !!! | ACTTGTTTTGGAAAGAGATT+TGG | - | chr5_1:4571382-4571401 | Msa0712770:intron | 30.0% |
| ATAAGAGGATGATCAAGAAT+CGG | - | chr5_1:4571440-4571459 | Msa0712770:intron | 30.0% | |
| !! | CTTGAGTTTTAACAGAATCA+CGG | + | chr5_1:4571583-4571602 | None:intergenic | 30.0% |
| ! | TAGATTGCTGATGATTTTGA+CGG | + | chr5_1:4571631-4571650 | None:intergenic | 30.0% |
| AAAGACATGTTGCAAATGTT+AGG | - | chr5_1:4571780-4571799 | Msa0712770:CDS | 30.0% | |
| !!! | GGGCATTATTGTTTTTTGTA+GGG | - | chr5_1:4571805-4571824 | Msa0712770:CDS | 30.0% |
| !!! | GATTCATCTACTTTTTTGTG+TGG | - | chr5_1:4571868-4571887 | Msa0712770:CDS | 30.0% |
| !!! | CTTTTTTGTGTGGTTATTTC+AGG | - | chr5_1:4571878-4571897 | Msa0712770:CDS | 30.0% |
| !! | TGGTAGTAGGATTGATTTTA+GGG | - | chr5_1:4572086-4572105 | Msa0712770:CDS | 30.0% |
| TTTGGTCATTCAATGAAGAC+AGG | + | chr5_1:4570952-4570971 | None:intergenic | 35.0% | |
| !!! | TTATAATGGGTCGTGTGTTT+TGG | + | chr5_1:4570970-4570989 | None:intergenic | 35.0% |
| ! | AGTACTCGTAATTCCACTTT+TGG | - | chr5_1:4570992-4571011 | Msa0712770:exon | 35.0% |
| !! | TTTTGGTGGGTCTAAAGTAA+GGG | + | chr5_1:4571053-4571072 | None:intergenic | 35.0% |
| !! | TTTTTGGTGGGTCTAAAGTA+AGG | + | chr5_1:4571054-4571073 | None:intergenic | 35.0% |
| AAACTAAGAGCAGTAACAAG+AGG | + | chr5_1:4571175-4571194 | None:intergenic | 35.0% | |
| ! | TCTTATTTCTCCTTTCACCA+GGG | + | chr5_1:4571426-4571445 | None:intergenic | 35.0% |
| TAAGAGGATGATCAAGAATC+GGG | - | chr5_1:4571441-4571460 | Msa0712770:intron | 35.0% | |
| CGTGATTCTGTTAAAACTCA+AGG | - | chr5_1:4571581-4571600 | Msa0712770:intron | 35.0% | |
| GTTAAAACTCAAGGAAGTCA+CGG | - | chr5_1:4571590-4571609 | Msa0712770:intron | 35.0% | |
| !! | TGATGATTTTGACGGAATCA+CGG | + | chr5_1:4571623-4571642 | None:intergenic | 35.0% |
| ACATGTTGCAAATGTTAGGT+GGG | - | chr5_1:4571784-4571803 | Msa0712770:CDS | 35.0% | |
| !!! | GGGGCATTATTGTTTTTTGT+AGG | - | chr5_1:4571804-4571823 | Msa0712770:CDS | 35.0% |
| GCAGAAAGTTCAATTATTGC+AGG | - | chr5_1:4571920-4571939 | Msa0712770:CDS | 35.0% | |
| CTTTCAATTCCACATAGTAG+TGG | - | chr5_1:4572066-4572085 | Msa0712770:CDS | 35.0% | |
| !! | GTGGTAGTAGGATTGATTTT+AGG | - | chr5_1:4572085-4572104 | Msa0712770:CDS | 35.0% |
| TTTGGTCATTCAATGAAGAC+AGG | + | chr5_1:4570952-4570971 | None:intergenic | 35.0% | |
| !!! | TTATAATGGGTCGTGTGTTT+TGG | + | chr5_1:4570970-4570989 | None:intergenic | 35.0% |
| ! | AGTACTCGTAATTCCACTTT+TGG | - | chr5_1:4570992-4571011 | Msa0712770:exon | 35.0% |
| !! | TTTTGGTGGGTCTAAAGTAA+GGG | + | chr5_1:4571053-4571072 | None:intergenic | 35.0% |
| !! | TTTTTGGTGGGTCTAAAGTA+AGG | + | chr5_1:4571054-4571073 | None:intergenic | 35.0% |
| AAACTAAGAGCAGTAACAAG+AGG | + | chr5_1:4571175-4571194 | None:intergenic | 35.0% | |
| ! | TCTTATTTCTCCTTTCACCA+GGG | + | chr5_1:4571426-4571445 | None:intergenic | 35.0% |
| TAAGAGGATGATCAAGAATC+GGG | - | chr5_1:4571441-4571460 | Msa0712770:intron | 35.0% | |
| CGTGATTCTGTTAAAACTCA+AGG | - | chr5_1:4571581-4571600 | Msa0712770:intron | 35.0% | |
| GTTAAAACTCAAGGAAGTCA+CGG | - | chr5_1:4571590-4571609 | Msa0712770:intron | 35.0% | |
| !! | TGATGATTTTGACGGAATCA+CGG | + | chr5_1:4571623-4571642 | None:intergenic | 35.0% |
| ACATGTTGCAAATGTTAGGT+GGG | - | chr5_1:4571784-4571803 | Msa0712770:CDS | 35.0% | |
| !!! | GGGGCATTATTGTTTTTTGT+AGG | - | chr5_1:4571804-4571823 | Msa0712770:CDS | 35.0% |
| GCAGAAAGTTCAATTATTGC+AGG | - | chr5_1:4571920-4571939 | Msa0712770:CDS | 35.0% | |
| CTTTCAATTCCACATAGTAG+TGG | - | chr5_1:4572066-4572085 | Msa0712770:CDS | 35.0% | |
| !! | GTGGTAGTAGGATTGATTTT+AGG | - | chr5_1:4572085-4572104 | Msa0712770:CDS | 35.0% |
| !! | ACTCGTAATTCCACTTTTGG+CGG | - | chr5_1:4570995-4571014 | Msa0712770:exon | 40.0% |
| ! | TTTGGTGGGTCTAAAGTAAG+GGG | + | chr5_1:4571052-4571071 | None:intergenic | 40.0% |
| !! | GCTTGTTGTGTCTGATAAGA+GGG | + | chr5_1:4571225-4571244 | None:intergenic | 40.0% |
| !! | TGCTTGTTGTGTCTGATAAG+AGG | + | chr5_1:4571226-4571245 | None:intergenic | 40.0% |
| CACCAACAACAACACAACAT+TGG | - | chr5_1:4571280-4571299 | Msa0712770:CDS | 40.0% | |
| ! | CACCAATGTTGTGTTGTTGT+TGG | + | chr5_1:4571285-4571304 | None:intergenic | 40.0% |
| TTCACCGTATGATCAGAATG+TGG | - | chr5_1:4571336-4571355 | Msa0712770:intron | 40.0% | |
| TCACCGTATGATCAGAATGT+GGG | - | chr5_1:4571337-4571356 | Msa0712770:intron | 40.0% | |
| ACACCCACATTCTGATCATA+CGG | + | chr5_1:4571343-4571362 | None:intergenic | 40.0% | |
| ! | CTCTTATTTCTCCTTTCACC+AGG | + | chr5_1:4571427-4571446 | None:intergenic | 40.0% |
| CTGGTGAAAGGAGAAATAAG+AGG | - | chr5_1:4571425-4571444 | Msa0712770:intron | 40.0% | |
| GACATGTTGCAAATGTTAGG+TGG | - | chr5_1:4571783-4571802 | Msa0712770:CDS | 40.0% | |
| CATGTTGCAAATGTTAGGTG+GGG | - | chr5_1:4571785-4571804 | Msa0712770:CDS | 40.0% | |
| ACTTAGAAGACAGCAACAAG+AGG | - | chr5_1:4571956-4571975 | Msa0712770:CDS | 40.0% | |
| TTCCACATAGTAGTGGTAGT+AGG | - | chr5_1:4572073-4572092 | Msa0712770:CDS | 40.0% | |
| ATCCTACTACCACTACTATG+TGG | + | chr5_1:4572078-4572097 | None:intergenic | 40.0% | |
| TGTCAATGTGAATGCAGCTA+TGG | - | chr5_1:4572118-4572137 | Msa0712770:CDS | 40.0% | |
| GTCAATGTGAATGCAGCTAT+GGG | - | chr5_1:4572119-4572138 | Msa0712770:CDS | 40.0% | |
| !! | ACTCGTAATTCCACTTTTGG+CGG | - | chr5_1:4570995-4571014 | Msa0712770:exon | 40.0% |
| ! | TTTGGTGGGTCTAAAGTAAG+GGG | + | chr5_1:4571052-4571071 | None:intergenic | 40.0% |
| !! | GCTTGTTGTGTCTGATAAGA+GGG | + | chr5_1:4571225-4571244 | None:intergenic | 40.0% |
| !! | TGCTTGTTGTGTCTGATAAG+AGG | + | chr5_1:4571226-4571245 | None:intergenic | 40.0% |
| CACCAACAACAACACAACAT+TGG | - | chr5_1:4571280-4571299 | Msa0712770:CDS | 40.0% | |
| ! | CACCAATGTTGTGTTGTTGT+TGG | + | chr5_1:4571285-4571304 | None:intergenic | 40.0% |
| TTCACCGTATGATCAGAATG+TGG | - | chr5_1:4571336-4571355 | Msa0712770:intron | 40.0% | |
| TCACCGTATGATCAGAATGT+GGG | - | chr5_1:4571337-4571356 | Msa0712770:intron | 40.0% | |
| ACACCCACATTCTGATCATA+CGG | + | chr5_1:4571343-4571362 | None:intergenic | 40.0% | |
| ! | CTCTTATTTCTCCTTTCACC+AGG | + | chr5_1:4571427-4571446 | None:intergenic | 40.0% |
| CTGGTGAAAGGAGAAATAAG+AGG | - | chr5_1:4571425-4571444 | Msa0712770:intron | 40.0% | |
| GACATGTTGCAAATGTTAGG+TGG | - | chr5_1:4571783-4571802 | Msa0712770:CDS | 40.0% | |
| CATGTTGCAAATGTTAGGTG+GGG | - | chr5_1:4571785-4571804 | Msa0712770:CDS | 40.0% | |
| ACTTAGAAGACAGCAACAAG+AGG | - | chr5_1:4571956-4571975 | Msa0712770:CDS | 40.0% | |
| TTCCACATAGTAGTGGTAGT+AGG | - | chr5_1:4572073-4572092 | Msa0712770:CDS | 40.0% | |
| ATCCTACTACCACTACTATG+TGG | + | chr5_1:4572078-4572097 | None:intergenic | 40.0% | |
| TGTCAATGTGAATGCAGCTA+TGG | - | chr5_1:4572118-4572137 | Msa0712770:CDS | 40.0% | |
| GTCAATGTGAATGCAGCTAT+GGG | - | chr5_1:4572119-4572138 | Msa0712770:CDS | 40.0% | |
| GTCGAGTGAGAAAGTCTTGA+AGG | + | chr5_1:4571030-4571049 | None:intergenic | 45.0% | |
| CTAAGAGCAGTAACAAGAGG+TGG | + | chr5_1:4571172-4571191 | None:intergenic | 45.0% | |
| AGAGGGTCGTAGAGAAAATC+AGG | + | chr5_1:4571208-4571227 | None:intergenic | 45.0% | |
| CTTTCACCAGGGCTAATATC+AGG | + | chr5_1:4571415-4571434 | None:intergenic | 45.0% | |
| CTGATATTAGCCCTGGTGAA+AGG | - | chr5_1:4571413-4571432 | Msa0712770:intron | 45.0% | |
| ACGTTCACGAGCTAGAAAAC+AGG | - | chr5_1:4571474-4571493 | Msa0712770:intron | 45.0% | |
| AAAACTCAAGGAAGTCACGG+TGG | - | chr5_1:4571593-4571612 | Msa0712770:intron | 45.0% | |
| GTCGAGTGAGAAAGTCTTGA+AGG | + | chr5_1:4571030-4571049 | None:intergenic | 45.0% | |
| CTAAGAGCAGTAACAAGAGG+TGG | + | chr5_1:4571172-4571191 | None:intergenic | 45.0% | |
| AGAGGGTCGTAGAGAAAATC+AGG | + | chr5_1:4571208-4571227 | None:intergenic | 45.0% | |
| CTTTCACCAGGGCTAATATC+AGG | + | chr5_1:4571415-4571434 | None:intergenic | 45.0% | |
| CTGATATTAGCCCTGGTGAA+AGG | - | chr5_1:4571413-4571432 | Msa0712770:intron | 45.0% | |
| ACGTTCACGAGCTAGAAAAC+AGG | - | chr5_1:4571474-4571493 | Msa0712770:intron | 45.0% | |
| AAAACTCAAGGAAGTCACGG+TGG | - | chr5_1:4571593-4571612 | Msa0712770:intron | 45.0% | |
| !! | CGTAATTCCACTTTTGGCGG+TGG | - | chr5_1:4570998-4571017 | Msa0712770:exon | 50.0% |
| GATAACACCACCGCCAAAAG+TGG | + | chr5_1:4571008-4571027 | None:intergenic | 50.0% | |
| AGCAGTAACAAGAGGTGGTG+TGG | + | chr5_1:4571167-4571186 | None:intergenic | 50.0% | |
| ! | GAAGCACCTGATATTAGCCC+TGG | - | chr5_1:4571406-4571425 | Msa0712770:intron | 50.0% |
| CAGCTATGGGAAGCAGAAAG+TGG | - | chr5_1:4572132-4572151 | Msa0712770:CDS | 50.0% | |
| CTATGGGAAGCAGAAAGTGG+TGG | - | chr5_1:4572135-4572154 | Msa0712770:CDS | 50.0% | |
| !! | CGTAATTCCACTTTTGGCGG+TGG | - | chr5_1:4570998-4571017 | Msa0712770:exon | 50.0% |
| GATAACACCACCGCCAAAAG+TGG | + | chr5_1:4571008-4571027 | None:intergenic | 50.0% | |
| AGCAGTAACAAGAGGTGGTG+TGG | + | chr5_1:4571167-4571186 | None:intergenic | 50.0% | |
| ! | GAAGCACCTGATATTAGCCC+TGG | - | chr5_1:4571406-4571425 | Msa0712770:intron | 50.0% |
| CAGCTATGGGAAGCAGAAAG+TGG | - | chr5_1:4572132-4572151 | Msa0712770:CDS | 50.0% | |
| CTATGGGAAGCAGAAAGTGG+TGG | - | chr5_1:4572135-4572154 | Msa0712770:CDS | 50.0% | |
| GTGGTGTGGTCGTAGAGCTA+GGG | + | chr5_1:4571153-4571172 | None:intergenic | 55.0% | |
| GTGGTGTGGTCGTAGAGCTA+GGG | + | chr5_1:4571153-4571172 | None:intergenic | 55.0% | |
| GGTGGTGTGGTCGTAGAGCT+AGG | + | chr5_1:4571154-4571173 | None:intergenic | 60.0% | |
| GGTGGTGTGGTCGTAGAGCT+AGG | + | chr5_1:4571154-4571173 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 4570923 | 4572289 | 4570923 | ID=Msa0712770;Name=Msa0712770 |
| chr5_1 | mRNA | 4570923 | 4572289 | 4570923 | ID=Msa0712770-mRNA-1;Parent=Msa0712770;Name=Msa0712770-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.33|1|1|1|3|86|231 |
| chr5_1 | exon | 4570923 | 4571077 | 4570923 | ID=Msa0712770-mRNA-1:exon:1886;Parent=Msa0712770-mRNA-1 |
| chr5_1 | exon | 4571235 | 4571312 | 4571235 | ID=Msa0712770-mRNA-1:exon:1885;Parent=Msa0712770-mRNA-1 |
| chr5_1 | exon | 4571741 | 4572289 | 4571741 | ID=Msa0712770-mRNA-1:exon:1884;Parent=Msa0712770-mRNA-1 |
| chr5_1 | CDS | 4571741 | 4572289 | 4571741 | ID=Msa0712770-mRNA-1:cds;Parent=Msa0712770-mRNA-1 |
| chr5_1 | CDS | 4571235 | 4571312 | 4571235 | ID=Msa0712770-mRNA-1:cds;Parent=Msa0712770-mRNA-1 |
| chr5_1 | CDS | 4571009 | 4571077 | 4571009 | ID=Msa0712770-mRNA-1:cds;Parent=Msa0712770-mRNA-1 |
| chr5_1 | three_prime_UTR | 4570923 | 4571008 | 4570923 | ID=Msa0712770-mRNA-1:three_prime_utr;Parent=Msa0712770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
