AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0759130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0759130 MtrunA17_Chr5g0406001 96.205 527 20 0 1 527 1 527 0.0 1031
Msa0759130 MtrunA17_Chr8g0371371 64.600 500 164 9 31 525 31 522 0.0 643
Msa0759130 MtrunA17_Chr8g0371351 47.348 509 241 13 33 526 20 516 2.06e-154 451
Msa0759130 MtrunA17_Chr3g0124421 38.497 439 253 12 37 466 25 455 9.63e-95 298
Msa0759130 MtrunA17_Chr5g0425141 36.842 513 289 17 14 513 1 491 2.33e-89 284
Msa0759130 MtrunA17_Chr6g0484731 28.198 383 219 17 112 461 191 550 3.07e-31 127
Msa0759130 MtrunA17_Chr4g0027681 29.082 392 224 18 112 474 77 443 7.24e-31 125
Msa0759130 MtrunA17_Chr1g0179751 26.812 414 258 15 75 461 74 469 7.86e-31 125
Msa0759130 MtrunA17_Chr7g0221681 27.007 411 246 17 112 486 72 464 1.39e-30 124
Msa0759130 MtrunA17_Chr7g0265331 27.178 482 286 21 72 522 45 492 4.97e-29 120
Msa0759130 MtrunA17_Chr3g0130931 27.143 490 281 19 6 461 1 448 7.54e-27 113
Msa0759130 MtrunA17_Chr5g0419291 26.464 461 280 18 19 461 9 428 1.41e-26 112
Msa0759130 MtrunA17_Chr2g0320621 27.765 443 263 21 72 486 43 456 1.45e-26 112
Msa0759130 MtrunA17_Chr1g0189381 27.865 384 220 19 112 461 69 429 3.65e-26 111
Msa0759130 MtrunA17_Chr3g0095891 27.792 385 218 15 113 461 98 458 7.54e-26 110
Msa0759130 MtrunA17_Chr5g0435871 25.738 474 288 18 10 461 3 434 7.88e-24 103
Msa0759130 MtrunA17_Chr3g0130741 28.261 368 219 17 117 461 89 434 9.38e-24 103
Msa0759130 MtrunA17_Chr7g0249451 26.247 381 229 14 112 461 71 430 2.93e-23 102
Msa0759130 MtrunA17_Chr5g0442921 26.382 398 226 14 106 463 185 555 4.95e-23 102
Msa0759130 MtrunA17_Chr8g0384731 27.273 385 229 17 114 473 73 431 5.18e-23 101
Msa0759130 MtrunA17_Chr5g0415951 25.527 474 285 20 14 461 3 434 2.87e-21 96.7
Msa0759130 MtrunA17_Chr5g0395911 26.431 367 231 15 113 461 68 413 4.42e-21 95.5
Msa0759130 MtrunA17_Chr2g0307991 26.873 387 237 18 96 461 43 404 4.99e-21 95.5
Msa0759130 MtrunA17_Chr8g0386441 26.632 383 226 16 99 461 82 429 1.51e-20 94.4
Msa0759130 MtrunA17_Chr3g0087851 26.842 380 228 16 106 461 83 436 1.81e-20 94.0
Msa0759130 MtrunA17_Chr8g0352671 25.482 467 282 20 19 461 12 436 2.54e-20 93.6
Msa0759130 MtrunA17_Chr4g0010951 24.505 404 232 14 112 461 61 445 3.28e-20 93.6
Msa0759130 MtrunA17_Chr2g0310801 26.776 366 228 16 113 461 91 433 4.00e-20 92.8
Msa0759130 MtrunA17_Chr4g0053721 25.110 454 262 21 108 525 77 488 1.34e-18 89.4
Msa0759130 MtrunA17_Chr7g0275731 26.596 376 216 17 113 461 142 484 4.65e-18 87.0
Msa0759130 MtrunA17_Chr5g0401601 24.582 419 230 19 119 486 95 478 4.69e-18 87.4
Msa0759130 MtrunA17_Chr2g0308001 24.515 412 252 18 106 493 52 428 5.26e-18 86.7
Msa0759130 MtrunA17_Chr8g0352661 26.066 422 246 21 69 461 52 436 1.44e-17 85.1
Msa0759130 MtrunA17_Chr1g0210201 26.400 375 211 17 113 461 132 467 3.05e-17 84.3
Msa0759130 MtrunA17_Chr2g0310821 25.967 362 227 14 113 461 109 442 4.11e-17 84.0
Msa0759130 MtrunA17_Chr3g0078321 25.916 382 222 19 122 473 69 419 5.60e-17 83.2
Msa0759130 MtrunA17_Chr6g0484901 26.703 367 219 14 113 461 157 491 6.02e-17 83.6
Msa0759130 MtrunA17_Chr6g0487471 23.864 440 254 20 61 465 45 438 6.20e-17 83.2
Msa0759130 MtrunA17_Chr8g0353261 26.613 372 215 17 113 461 97 433 1.11e-16 82.4
Msa0759130 MtrunA17_Chr1g0164401 28.610 374 204 17 113 461 93 428 1.39e-16 82.0
Msa0759130 MtrunA17_Chr1g0159791 26.064 376 234 15 109 461 55 409 1.53e-16 82.0
Msa0759130 MtrunA17_Chr8g0390761 23.876 356 225 13 114 451 118 445 9.34e-16 79.7
Msa0759130 MtrunA17_Chr3g0099901 24.798 371 229 13 113 461 143 485 5.56e-15 77.4
Msa0759130 MtrunA17_Chr2g0333991 23.232 396 241 16 91 460 76 434 6.33e-15 77.0
Msa0759130 MtrunA17_Chr2g0312941 25.258 388 233 18 112 461 87 455 1.54e-14 75.9
Msa0759130 MtrunA17_Chr1g0165201 25.668 374 220 15 113 461 129 469 1.77e-14 75.9
Msa0759130 MtrunA17_Chr4g0023351 28.814 236 141 11 111 336 57 275 2.05e-14 73.9
Msa0759130 MtrunA17_Chr2g0311451 23.573 403 233 16 91 461 76 435 3.07e-14 75.1
Msa0759130 MtrunA17_Chr7g0267171 24.500 400 220 18 116 461 94 465 1.47e-13 72.8
Msa0759130 MtrunA17_Chr2g0291201 25.067 375 229 17 113 461 103 451 1.68e-13 72.8
Msa0759130 MtrunA17_Chr7g0239001 25.065 383 214 18 115 458 62 410 9.44e-13 70.1
Msa0759130 MtrunA17_Chr3g0099891 25.936 374 215 18 113 461 118 454 1.32e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0759130 AT2G17760.1 53.830 483 212 8 44 522 38 513 2.40e-176 507
Msa0759130 AT4G35880.1 50.881 454 211 9 17 465 9 455 5.06e-154 450
Msa0759130 AT4G35880.2 49.180 427 205 8 17 438 9 428 1.04e-136 403
Msa0759130 AT3G51330.1 48.869 442 210 12 33 465 23 457 1.82e-130 390
Msa0759130 AT3G51330.3 48.858 438 208 12 33 461 23 453 5.11e-129 384
Msa0759130 AT3G51350.1 47.404 443 214 14 33 465 23 456 8.02e-128 384
Msa0759130 AT3G51340.2 45.614 456 231 12 16 465 7 451 2.98e-127 382
Msa0759130 AT3G51360.9 44.612 464 236 12 24 481 17 465 5.71e-124 372
Msa0759130 AT3G51360.1 44.612 464 236 12 24 481 7 455 6.23e-124 372
Msa0759130 AT3G51340.1 44.206 466 235 14 16 465 7 463 7.79e-120 363
Msa0759130 AT3G51330.2 46.635 416 206 12 33 439 23 431 1.88e-111 339
Msa0759130 AT3G51360.6 43.735 423 217 12 24 440 17 424 2.21e-107 328
Msa0759130 AT3G51360.10 43.735 423 217 12 24 440 7 414 2.39e-107 327
Msa0759130 AT3G51340.3 43.812 404 211 11 16 414 7 399 3.58e-103 316
Msa0759130 AT3G51360.7 45.745 376 190 9 112 481 4 371 9.45e-103 315
Msa0759130 AT3G51360.5 43.990 391 202 10 24 412 17 392 2.07e-102 314
Msa0759130 AT3G51360.4 43.990 391 202 10 24 412 7 382 3.23e-102 313
Msa0759130 AT3G51340.4 45.479 376 192 10 16 386 7 374 4.73e-101 310
Msa0759130 AT3G51360.2 45.210 334 169 8 24 356 17 337 4.34e-91 283
Msa0759130 AT5G10080.1 36.157 484 271 15 22 487 8 471 5.39e-89 283
Msa0759130 AT3G51360.3 42.730 337 180 8 150 481 1 329 6.70e-80 254
Msa0759130 AT3G51360.8 42.730 337 180 8 150 481 1 329 6.70e-80 254
Msa0759130 AT3G02740.2 29.250 400 243 15 112 485 9 394 1.02e-34 135
Msa0759130 AT3G02740.1 29.574 399 243 15 112 485 84 469 1.34e-34 136
Msa0759130 AT5G36260.1 26.667 450 264 19 36 461 26 433 3.72e-31 126
Msa0759130 AT5G22850.1 27.119 472 291 19 55 500 29 473 4.61e-31 126
Msa0759130 AT1G05840.1 29.570 372 228 15 112 461 79 438 1.27e-30 125
Msa0759130 AT4G33490.2 29.058 382 218 19 115 469 62 417 6.92e-29 119
Msa0759130 AT2G36670.2 27.427 412 264 16 72 461 59 457 7.72e-29 120
Msa0759130 AT2G36670.4 27.394 376 242 13 106 461 27 391 1.68e-28 118
Msa0759130 AT2G36670.3 27.394 376 242 13 106 461 27 391 1.68e-28 118
Msa0759130 AT1G65240.1 27.763 371 230 14 112 461 73 426 1.87e-28 118
Msa0759130 AT2G36670.1 26.988 415 267 16 72 461 59 462 2.02e-28 119
Msa0759130 AT1G49050.2 29.040 396 212 22 109 461 26 395 6.84e-28 116
Msa0759130 AT1G49050.1 28.645 391 214 22 112 461 202 568 1.24e-26 114
Msa0759130 AT1G08210.1 26.697 442 265 19 112 526 83 492 1.15e-25 110
Msa0759130 AT1G08210.4 26.697 442 265 19 112 526 117 526 1.41e-25 110
Msa0759130 AT1G08210.3 26.697 442 265 19 112 526 131 540 1.69e-25 110
Msa0759130 AT1G44130.1 28.767 365 222 16 117 461 53 399 7.08e-25 107
Msa0759130 AT3G54400.1 26.075 372 217 15 113 461 88 424 2.48e-24 105
Msa0759130 AT4G33490.1 27.198 364 219 17 115 456 59 398 1.59e-23 103
Msa0759130 AT3G50050.1 26.854 391 224 20 119 481 99 455 2.09e-23 104
Msa0759130 AT1G08210.2 25.373 469 264 20 112 526 83 519 4.13e-22 100
Msa0759130 AT2G42980.1 27.132 387 226 15 113 463 160 526 7.06e-22 99.4
Msa0759130 AT3G61820.1 28.534 382 207 18 113 461 135 483 9.32e-22 99.0
Msa0759130 AT5G43100.2 25.591 465 273 24 69 504 37 457 7.32e-21 95.9
Msa0759130 AT5G43100.1 25.847 472 263 26 69 504 37 457 1.18e-20 96.3
Msa0759130 AT2G03200.1 28.760 379 207 18 116 461 110 458 3.09e-20 94.0
Msa0759130 AT1G64830.1 28.912 377 206 19 113 461 86 428 5.27e-20 93.2
Msa0759130 AT1G49050.3 28.881 277 163 12 112 370 202 462 5.38e-20 93.2
Msa0759130 AT3G25700.1 23.232 396 227 17 113 461 84 449 8.23e-20 92.4
Msa0759130 AT4G30040.1 27.049 366 220 16 114 456 86 427 1.71e-19 91.3
Msa0759130 AT5G33340.1 26.913 379 213 17 113 461 90 434 6.30e-19 89.7
Msa0759130 AT1G01300.1 26.330 376 217 15 113 461 142 484 1.03e-18 89.4
Msa0759130 AT3G52500.1 23.881 402 225 12 115 461 92 467 1.24e-18 89.0
Msa0759130 AT3G59080.1 26.302 384 231 14 113 463 170 534 1.41e-18 89.4
Msa0759130 AT1G77480.2 24.267 375 243 16 109 461 64 419 2.06e-18 88.2
Msa0759130 AT1G77480.1 24.403 377 240 16 109 461 64 419 2.57e-18 88.2
Msa0759130 AT5G10770.1 26.415 371 222 17 113 461 132 473 3.44e-18 87.8
Msa0759130 AT2G23945.1 28.065 310 179 15 112 402 95 379 1.10e-17 86.3
Msa0759130 AT5G10760.1 27.671 365 216 14 113 461 132 464 1.18e-17 86.3
Msa0759130 AT5G07030.1 25.474 369 214 17 119 461 121 454 5.03e-17 84.0
Msa0759130 AT3G18490.1 26.596 376 212 18 113 461 162 500 3.66e-16 81.6
Msa0759130 AT3G20015.1 24.612 451 256 18 62 461 53 470 4.73e-16 81.3
Msa0759130 AT1G25510.1 26.542 373 213 17 113 461 148 483 7.61e-16 80.5
Msa0759130 AT4G30030.1 25.135 370 226 14 114 461 79 419 8.22e-16 80.1
Msa0759130 AT1G31450.1 23.077 416 252 17 78 461 62 441 2.58e-14 75.5
Msa0759130 AT1G09750.1 26.448 397 234 18 94 461 81 448 2.62e-14 75.5
Msa0759130 AT3G42550.1 21.447 387 223 14 108 475 73 397 5.28e-13 71.6
Msa0759130 AT2G28040.2 23.288 365 229 15 111 461 54 381 1.07e-12 70.1
Msa0759130 AT2G28040.1 23.288 365 229 15 111 461 63 390 1.44e-12 69.7
Msa0759130 AT5G45120.1 26.225 347 186 13 110 411 82 403 5.56e-12 68.6
Msa0759130 AT1G79720.1 26.615 387 207 19 113 461 135 482 1.76e-11 67.0
Msa0759130 AT5G02190.1 21.615 384 234 13 122 461 82 442 2.10e-11 66.6

Find 118 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAGATCTCTATTATATT+TGG 0.103631 5_2:-14676114 Msa0759130:three_prime_UTR
AATTTCCTCCCACAATAATT+TGG 0.127702 5_2:+14677593 None:intergenic
GAAGGGGTAGATTGTATTTC+AGG 0.187188 5_2:+14676420 None:intergenic
TGATCCGGTGAAGGGTATTT+TGG 0.196341 5_2:-14680286 Msa0759130:CDS
GATCATCATTATCTGTAATT+AGG 0.222151 5_2:+14678315 None:intergenic
GCTAACCCACTAATTACTTT+TGG 0.224798 5_2:-14678281 Msa0759130:CDS
CTGAAACATATAGAGAATTA+TGG 0.246701 5_2:+14680400 None:intergenic
TATCTTGTTGCATTAGATAC+TGG 0.267458 5_2:-14678822 Msa0759130:CDS
GATAGATATTCAACTTGATA+TGG 0.275532 5_2:+14678383 None:intergenic
ATCTGGTACGTGGTGTTATC+TGG 0.281632 5_2:+14680135 None:intergenic
TACTTCAACTACTGGTTTCT+TGG 0.296582 5_2:-14678354 Msa0759130:CDS
TATACCACATAATTTGTCTT+TGG 0.297226 5_2:-14676140 Msa0759130:three_prime_UTR
ACCCTGCCACTTGTTATTAT+CGG 0.308776 5_2:+14676947 None:intergenic
CTCACATAAGCTGCTATTGC+AGG 0.328660 5_2:+14678445 None:intergenic
ATACTGGGAGTGACTTGTTC+TGG 0.342280 5_2:-14678806 Msa0759130:CDS
TATAGTCTTAGGGTTCAAAT+TGG 0.344034 5_2:+14676043 None:intergenic
GCAGCTCCAAATGGTCTGTT+TGG 0.347954 5_2:-14678011 Msa0759130:CDS
GTTTGGGAAGAATCACATTT+GGG 0.350381 5_2:-14677899 Msa0759130:CDS
CCTTGTTTGGCTAAGATACT+TGG 0.362835 5_2:+14677963 None:intergenic
TTCTTAAATGAGTGACTAGA+TGG 0.366521 5_2:+14676378 None:intergenic
ATTTCCTCCCACAATAATTT+GGG 0.367517 5_2:+14677594 None:intergenic
CATTGGGAACTTCAATTGTC+TGG 0.371141 5_2:+14677014 None:intergenic
AGAACCTGCATTAGCATTTA+CGG 0.372839 5_2:-14676355 Msa0759130:CDS
ACGTACCAGATTAGTTTGTT+TGG 0.379494 5_2:-14680123 Msa0759130:CDS
TTGAGTACTGCTATGACTTA+AGG 0.381947 5_2:-14677325 Msa0759130:intron
ATTTGAAGTTAGCCCTTGTT+TGG 0.382291 5_2:+14677950 None:intergenic
TGTTAACAATGTTCTTTGTT+TGG 0.388665 5_2:-14676825 Msa0759130:CDS
TGAAACATATAGAGAATTAT+GGG 0.389328 5_2:+14680401 None:intergenic
AGCAACAATGTGAATATCAT+TGG 0.391322 5_2:-14676791 Msa0759130:CDS
GGTTTGGGAAGAATCACATT+TGG 0.393676 5_2:-14677900 Msa0759130:CDS
GGGGCGTGCGATCGGTTAAC+AGG 0.398760 5_2:+14676471 None:intergenic
AGTTGTGGGCAAGTTCAAAC+AGG 0.401886 5_2:-14678050 Msa0759130:CDS
GGGAGGAAATTCCGCTGATC+TGG 0.403580 5_2:-14677581 Msa0759130:CDS
TGCCATGGTTCTAGTTCATT+CGG 0.404192 5_2:-14680333 Msa0759130:CDS
CCTAGTCCAAACAGACCATT+TGG 0.407470 5_2:+14678005 None:intergenic
ACTATCCAAACAAACTAATC+TGG 0.410497 5_2:+14680118 None:intergenic
CTCTATACCATGGACACATT+TGG 0.418622 5_2:+14678767 None:intergenic
TTCAATGCAATATTCGATAC+TGG 0.419948 5_2:-14677556 Msa0759130:CDS
CATATAGAGAATTATGGGTT+TGG 0.434870 5_2:+14680406 None:intergenic
CTGGATGGGGCAGCTCCAAA+TGG 0.437755 5_2:-14678020 Msa0759130:CDS
TGACTAGATGGAAGTCTTTG+AGG 0.440995 5_2:+14676390 None:intergenic
AACTACTGGTTTCTTGGTAG+AGG 0.441070 5_2:-14678348 Msa0759130:CDS
TTCATCGTCAAGTTAACATT+GGG 0.443905 5_2:+14676998 None:intergenic
ACACAGTGCTCTTCTTCATC+TGG 0.446019 5_2:-14678416 Msa0759130:CDS
GTGAGAGATTATAGTATTGA+CGG 0.449278 5_2:+14676065 None:intergenic
TATTCACGACTTCCCTTGTC+AGG 0.449376 5_2:+14680249 None:intergenic
CCCTGCCACTTGTTATTATC+GGG 0.450581 5_2:+14676948 None:intergenic
CCAAATGGTCTGTTTGGACT+AGG 0.469915 5_2:-14678005 Msa0759130:CDS
TGAGTAATTTGCTTATAAGC+CGG 0.474988 5_2:+14677508 None:intergenic
CCCAGCTGTGTCTCCTGCTA+TGG 0.476244 5_2:-14676451 Msa0759130:CDS
CGGGGTCGGCGTCTTGCTGA+CGG 0.476845 5_2:-14680192 Msa0759130:CDS
TCAGGATTCACCGCCATAGC+AGG 0.482898 5_2:+14676438 None:intergenic
CATGCAGAAAACTTCATGAC+TGG 0.483710 5_2:-14676672 Msa0759130:intron
AGTTACCCAAAAGTAATTAG+TGG 0.486929 5_2:+14678275 None:intergenic
TCAGAAAATACTTCAACTAC+TGG 0.487753 5_2:-14678362 Msa0759130:CDS
TTTCATCGTCAAGTTAACAT+TGG 0.489542 5_2:+14676997 None:intergenic
AGTCTTTGAGGACCATTTGA+AGG 0.496392 5_2:+14676402 None:intergenic
GAGTAATTTGCTTATAAGCC+GGG 0.497835 5_2:+14677509 None:intergenic
ATACAATCTACCCCTTCAAA+TGG 0.498025 5_2:-14676414 Msa0759130:CDS
ATCTTGTTGCATTAGATACT+GGG 0.501285 5_2:-14678821 Msa0759130:CDS
GCCATAGCAGGAGACACAGC+TGG 0.503097 5_2:+14676450 None:intergenic
CATGGTATAGAGCTATCAAC+AGG 0.505796 5_2:-14678756 Msa0759130:CDS
CACTGTCACCCAAATTATTG+TGG 0.506380 5_2:-14677602 Msa0759130:CDS
ACCCGATAATAACAAGTGGC+AGG 0.513201 5_2:-14676949 Msa0759130:CDS
AATGTTAACTTGACGATGAA+AGG 0.513228 5_2:-14676995 Msa0759130:CDS
CCATAGCAGGAGACACAGCT+GGG 0.513250 5_2:+14676451 None:intergenic
CCAAGTATCTTAGCCAAACA+AGG 0.519276 5_2:-14677963 Msa0759130:CDS
TGGGGATAATAATAGTAGCT+TGG 0.520297 5_2:-14677880 Msa0759130:CDS
AAGTCATAGCAGTACTCAAA+GGG 0.522967 5_2:+14677329 None:intergenic
GTTGTTTAAGTATGTAAATG+AGG 0.527623 5_2:+14677531 None:intergenic
ACACAGCTGGGGCGTGCGAT+CGG 0.529343 5_2:+14676463 None:intergenic
GTCTTTGAGGACCATTTGAA+GGG 0.534896 5_2:+14676403 None:intergenic
GTTACCCAAAAGTAATTAGT+GGG 0.541649 5_2:+14678276 None:intergenic
TCACAATCACGTACGTGCCA+TGG 0.555274 5_2:-14680348 Msa0759130:CDS
GCGAGAACATGACTCTAGGT+TGG 0.557604 5_2:-14676629 Msa0759130:CDS
ACTGTCACCCAAATTATTGT+GGG 0.559749 5_2:-14677601 Msa0759130:CDS
GATCGCGAGAACATGACTCT+AGG 0.567796 5_2:-14676633 Msa0759130:CDS
TATTGAGAACGTTCCTGACA+AGG 0.569108 5_2:-14680262 Msa0759130:CDS
TCGTGAATACTATGTTGCTA+TGG 0.570427 5_2:-14680235 Msa0759130:CDS
GCCACCGTAAATGCTAATGC+AGG 0.574848 5_2:+14676351 None:intergenic
TGCGACGGCCTAATATTGAA+TGG 0.577927 5_2:+14677843 None:intergenic
CACATTTGGTACAATTGCAA+GGG 0.578522 5_2:+14678781 None:intergenic
ACACATTTGGTACAATTGCA+AGG 0.579567 5_2:+14678780 None:intergenic
ATACCCAAAATACCCTTCAC+CGG 0.579612 5_2:+14680282 None:intergenic
GCAACAAGATACGATGAAGC+TGG 0.584329 5_2:+14678834 None:intergenic
CAGTGCTCTTCTTCATCTGG+TGG 0.585118 5_2:-14678413 Msa0759130:CDS
GAATCCAAAGACAAATTATG+TGG 0.585265 5_2:+14676136 None:intergenic
TAAGTCATAGCAGTACTCAA+AGG 0.585485 5_2:+14677328 None:intergenic
AAAACTTCATGACTGGCTAC+CGG 0.586042 5_2:-14676665 Msa0759130:CDS
AGCTGTGTCTCCTGCTATGG+CGG 0.589379 5_2:-14676448 Msa0759130:CDS
GAACATGACTCTAGGTTGGA+AGG 0.591059 5_2:-14676625 Msa0759130:CDS
ACAATAACCACTTACTGCGA+CGG 0.595509 5_2:+14677828 None:intergenic
TGGTGTTCCAACAGAAACAT+TGG 0.596649 5_2:+14678854 None:intergenic
CCGGATCAGAAAACCGATGG+TGG 0.596699 5_2:+14680301 None:intergenic
GCGTGTGAAGTAAATGTCAA+TGG 0.600629 5_2:+14680570 None:intergenic
TATAGAGCTATCAACAGGAC+AGG 0.606470 5_2:-14678751 Msa0759130:intron
CCCGATAATAACAAGTGGCA+GGG 0.610110 5_2:-14676948 Msa0759130:intron
AATAATAGTAGCTTGGACCA+AGG 0.612712 5_2:-14677873 Msa0759130:CDS
TCGGTTTCGATATCCACCAT+CGG 0.616803 5_2:-14680314 Msa0759130:CDS
AACCGAATGAACTAGAACCA+TGG 0.618540 5_2:+14680331 None:intergenic
GTTAACTTGACGATGAAAGG+TGG 0.618692 5_2:-14676992 Msa0759130:CDS
AATTGTACCAAATGTGTCCA+TGG 0.625959 5_2:-14678774 Msa0759130:CDS
TCACCGGATCAGAAAACCGA+TGG 0.631331 5_2:+14680298 None:intergenic
GTCACCCAAATTATTGTGGG+AGG 0.641019 5_2:-14677598 Msa0759130:CDS
ATTGAGAACGTTCCTGACAA+GGG 0.643964 5_2:-14680261 Msa0759130:CDS
ATTTACATACTTAAACAACC+CGG 0.646591 5_2:-14677527 Msa0759130:CDS
TGCATTGAACTCCAGATCAG+CGG 0.650143 5_2:+14677570 None:intergenic
TTTGGGAAGAATCACATTTG+GGG 0.655444 5_2:-14677898 Msa0759130:CDS
GGTCGGCGTCTTGCTGACGG+TGG 0.660969 5_2:-14680189 Msa0759130:CDS
CTGTTGATAGCTCTATACCA+TGG 0.663638 5_2:+14678757 None:intergenic
GTTGTGGGCAAGTTCAAACA+GGG 0.666836 5_2:-14678049 Msa0759130:CDS
ATGGACCCGATAATAACAAG+TGG 0.685658 5_2:-14676953 Msa0759130:CDS
CATAGCAGGAGACACAGCTG+GGG 0.686306 5_2:+14676452 None:intergenic
ACCTGCATTAGCATTTACGG+TGG 0.694138 5_2:-14676352 Msa0759130:CDS
TCTTTGAGGACCATTTGAAG+GGG 0.697645 5_2:+14676404 None:intergenic
CAAGTATCTTAGCCAAACAA+GGG 0.698265 5_2:-14677962 Msa0759130:CDS
TTGTGGGCAAGTTCAAACAG+GGG 0.708328 5_2:-14678048 Msa0759130:CDS
AAACAAACTAATCTGGTACG+TGG 0.721432 5_2:+14680125 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAAATAATGTAATTAA+AGG + chr5_2:14676806-14676825 None:intergenic 10.0%
!!! CAAAATTCATATTTTTTTAA+TGG - chr5_2:14677544-14677563 Msa0759130:CDS 10.0%
!! AAAATGAAAAGAATAATTAA+GGG + chr5_2:14677590-14677609 None:intergenic 10.0%
!! AAAAATGAAAAGAATAATTA+AGG + chr5_2:14677591-14677610 None:intergenic 10.0%
!!! TAATTATTCTTTTCATTTTT+TGG - chr5_2:14677591-14677610 Msa0759130:CDS 10.0%
!!! AATTATTCTTTTCATTTTTT+GGG - chr5_2:14677592-14677611 Msa0759130:CDS 10.0%
!! AAAATATTGTATAGTTAAAT+TGG + chr5_2:14678526-14678545 None:intergenic 10.0%
!!! TTAACTATACAATATTTTTT+TGG - chr5_2:14678528-14678547 Msa0759130:intron 10.0%
!!! ATAATTTTTAAATATGTAAC+TGG - chr5_2:14679190-14679209 Msa0759130:intron 10.0%
!! AAAAATTCGGAAAATATATA+TGG + chr5_2:14676148-14676167 None:intergenic 15.0%
!! TATAACAAAAAATTAAGTAG+TGG + chr5_2:14676575-14676594 None:intergenic 15.0%
!!! TTTTAATTTCATCTTTTTTC+TGG - chr5_2:14676595-14676614 Msa0759130:intron 15.0%
!!! TTTTTAGAAAGAAAAAGATT+GGG - chr5_2:14676710-14676729 Msa0759130:intron 15.0%
!!! TTCCATTTTAGATAATTTTT+TGG - chr5_2:14676824-14676843 Msa0759130:CDS 15.0%
!! TTCCAAAAAATTATCTAAAA+TGG + chr5_2:14676829-14676848 None:intergenic 15.0%
!!! TTTGGAATTGAATATTTAAA+AGG - chr5_2:14676842-14676861 Msa0759130:intron 15.0%
!! GAGATAAATTTATCATAAAA+TGG - chr5_2:14677064-14677083 Msa0759130:intron 15.0%
!! AACATTAATCTCTTAAATTT+AGG + chr5_2:14677121-14677140 None:intergenic 15.0%
!! ATCTAAAAAAAAATCTGATA+TGG - chr5_2:14677399-14677418 Msa0759130:intron 15.0%
!!! GTTACAAAACATTTTTTTTT+TGG + chr5_2:14678462-14678481 None:intergenic 15.0%
!! ATTCAAAAATTAAACTACAA+AGG - chr5_2:14679274-14679293 Msa0759130:intron 15.0%
!!! TATATATTTTGAAGTACAAA+GGG + chr5_2:14680077-14680096 None:intergenic 15.0%
!! AATTATGTTATGTTATTATC+AGG - chr5_2:14680134-14680153 Msa0759130:CDS 15.0%
!!! TATTACTATACATTTTTTTC+TGG - chr5_2:14680428-14680447 Msa0759130:CDS 15.0%
!! TGAAACATATAGAGAATTAT+GGG + chr5_2:14676255-14676274 None:intergenic 20.0%
!!! CTTTTTAGAAAGAAAAAGAT+TGG - chr5_2:14676709-14676728 Msa0759130:intron 20.0%
!!! ACTTTTTCTTTGTAAATCTA+AGG + chr5_2:14676984-14677003 None:intergenic 20.0%
!!! TTCACATTTAGATTCTTTTT+TGG + chr5_2:14677430-14677449 None:intergenic 20.0%
!!! ATTCATATTTTTTTAATGGG+AGG - chr5_2:14677548-14677567 Msa0759130:CDS 20.0%
!! ATGAATCTAAAAATACTTGA+TGG - chr5_2:14677664-14677683 Msa0759130:intron 20.0%
!! TGAATCTAAAAATACTTGAT+GGG - chr5_2:14677665-14677684 Msa0759130:intron 20.0%
!!! GTATAGTTTTGATACATATA+TGG + chr5_2:14677957-14677976 None:intergenic 20.0%
!!! TGGTTTTGATACATTTTTTT+TGG + chr5_2:14678052-14678071 None:intergenic 20.0%
!! TACAAGATTAAACTATAGTA+TGG + chr5_2:14678072-14678091 None:intergenic 20.0%
!!! AATTCTTTTTCAATGTGTTT+TGG - chr5_2:14678723-14678742 Msa0759130:intron 20.0%
!! TTAATTAATAAGAACTCAAG+TGG + chr5_2:14679230-14679249 None:intergenic 20.0%
!!! CTATATATTTTGAAGTACAA+AGG + chr5_2:14680078-14680097 None:intergenic 20.0%
!! AATAACTAATGGAGAATTAA+AGG + chr5_2:14680104-14680123 None:intergenic 20.0%
!! TTCTCATTAACAATAACTAA+TGG + chr5_2:14680115-14680134 None:intergenic 20.0%
!! CTTAAGATCTCTATTATATT+TGG - chr5_2:14680539-14680558 Msa0759130:five_prime_UTR 20.0%
! CGTGTGATATGAAAAAAATT+CGG + chr5_2:14676161-14676180 None:intergenic 25.0%
! CTGAAACATATAGAGAATTA+TGG + chr5_2:14676256-14676275 None:intergenic 25.0%
! ATAAAGTTCATAGAATCACA+CGG - chr5_2:14676679-14676698 Msa0759130:intron 25.0%
! GTAATTAAAGGCTAAAGATT+TGG + chr5_2:14676794-14676813 None:intergenic 25.0%
! TATACTACACTAAATTGTAC+AGG - chr5_2:14676928-14676947 Msa0759130:intron 25.0%
!!! CATTTAGATTCTTTTTTGGA+AGG + chr5_2:14677426-14677445 None:intergenic 25.0%
! ATCAAGAATGCATAACAAAA+AGG + chr5_2:14677696-14677715 None:intergenic 25.0%
! GATAGATATTCAACTTGATA+TGG + chr5_2:14678273-14678292 None:intergenic 25.0%
! GATCATCATTATCTGTAATT+AGG + chr5_2:14678341-14678360 None:intergenic 25.0%
!!! TTTTTTGGACTTGCTTTTTT+TGG - chr5_2:14678543-14678562 Msa0759130:intron 25.0%
! GAAAAACACCATTCAATATT+AGG - chr5_2:14678802-14678821 Msa0759130:CDS 25.0%
! CTTTAAACTATCTTTCTGAA+AGG - chr5_2:14678958-14678977 Msa0759130:intron 25.0%
! GTTGTTTAAGTATGTAAATG+AGG + chr5_2:14679125-14679144 None:intergenic 25.0%
! ATTTACATACTTAAACAACC+CGG - chr5_2:14679126-14679145 Msa0759130:intron 25.0%
! TTGTTAAGTTAGTTACAAGT+TGG - chr5_2:14679457-14679476 Msa0759130:intron 25.0%
!! GAGCATGAAATATAACTTTT+TGG - chr5_2:14679731-14679750 Msa0759130:intron 25.0%
! AACCTTATAAATGATTCTTG+TGG - chr5_2:14679791-14679810 Msa0759130:intron 25.0%
! TACCACAAGAATCATTTATA+AGG + chr5_2:14679796-14679815 None:intergenic 25.0%
! TGTTAACAATGTTCTTTGTT+TGG - chr5_2:14679828-14679847 Msa0759130:intron 25.0%
!!! CTAAAAAATTTGCTAAAAGC+AGG + chr5_2:14680334-14680353 None:intergenic 25.0%
!! TATACCACATAATTTGTCTT+TGG - chr5_2:14680513-14680532 Msa0759130:five_prime_UTR 25.0%
! CTCATCATTTTCATTCATCA+TGG - chr5_2:14676205-14676224 Msa0759130:three_prime_UTR 30.0%
CATATAGAGAATTATGGGTT+TGG + chr5_2:14676250-14676269 None:intergenic 30.0%
ACTATCCAAACAAACTAATC+TGG + chr5_2:14676538-14676557 None:intergenic 30.0%
TAAAGTTCATAGAATCACAC+GGG - chr5_2:14676680-14676699 Msa0759130:intron 30.0%
AATTGCTATGTTTGAACACT+TGG - chr5_2:14677272-14677291 Msa0759130:intron 30.0%
TTGAAAATCACACACACAAA+TGG + chr5_2:14677314-14677333 None:intergenic 30.0%
!!! TCTTTTCATTTTTTGGGTCA+TGG - chr5_2:14677598-14677617 Msa0759130:CDS 30.0%
! TTTGTTATGCATTCTTGATG+TGG - chr5_2:14677697-14677716 Msa0759130:intron 30.0%
!!! CATTGCTTATTTTTTCCTCT+TGG - chr5_2:14677753-14677772 Msa0759130:intron 30.0%
AAACTGAAATACAAACCAAG+AGG + chr5_2:14677771-14677790 None:intergenic 30.0%
TATCTTGTTGCATTAGATAC+TGG - chr5_2:14677831-14677850 Msa0759130:intron 30.0%
ATCTTGTTGCATTAGATACT+GGG - chr5_2:14677832-14677851 Msa0759130:intron 30.0%
!!! TTTTTTTTGGCACACAACAA+AGG + chr5_2:14678039-14678058 None:intergenic 30.0%
TCAGAAAATACTTCAACTAC+TGG - chr5_2:14678291-14678310 Msa0759130:CDS 30.0%
!! CTAACCCACTAATTACTTTT+GGG - chr5_2:14678373-14678392 Msa0759130:CDS 30.0%
GTTACCCAAAAGTAATTAGT+GGG + chr5_2:14678380-14678399 None:intergenic 30.0%
AGTTACCCAAAAGTAATTAG+TGG + chr5_2:14678381-14678400 None:intergenic 30.0%
! TATTGAATGGTGTTTTTCCT+TGG + chr5_2:14678800-14678819 None:intergenic 30.0%
!!! CATTTATGTTTTTAGCAGCT+TGG - chr5_2:14678869-14678888 Msa0759130:intron 30.0%
!! TAGACCTTTGAGGTTAATTT+GGG + chr5_2:14678937-14678956 None:intergenic 30.0%
!! ATAGACCTTTGAGGTTAATT+TGG + chr5_2:14678938-14678957 None:intergenic 30.0%
AGTTTAAAGATAGACCTTTG+AGG + chr5_2:14678947-14678966 None:intergenic 30.0%
ATTTCCTCCCACAATAATTT+GGG + chr5_2:14679062-14679081 None:intergenic 30.0%
AATTTCCTCCCACAATAATT+TGG + chr5_2:14679063-14679082 None:intergenic 30.0%
TTCAATGCAATATTCGATAC+TGG - chr5_2:14679097-14679116 Msa0759130:intron 30.0%
!! TGAGTAATTTGCTTATAAGC+CGG + chr5_2:14679148-14679167 None:intergenic 30.0%
TAATAAGAACTCAAGTGGAA+TGG + chr5_2:14679225-14679244 None:intergenic 30.0%
GAATCAAACTGCAAAAACAA+TGG + chr5_2:14679258-14679277 None:intergenic 30.0%
TTCATCGTCAAGTTAACATT+GGG + chr5_2:14679658-14679677 None:intergenic 30.0%
TTTCATCGTCAAGTTAACAT+TGG + chr5_2:14679659-14679678 None:intergenic 30.0%
! AATGTTAACTTGACGATGAA+AGG - chr5_2:14679658-14679677 Msa0759130:intron 30.0%
!! TGGAGACAATTATTTTGTCA+TGG - chr5_2:14679681-14679700 Msa0759130:intron 30.0%
AGCAACAATGTGAATATCAT+TGG - chr5_2:14679862-14679881 Msa0759130:intron 30.0%
TTCTTAAATGAGTGACTAGA+TGG + chr5_2:14680278-14680297 None:intergenic 30.0%
GAATCCAAAGACAAATTATG+TGG + chr5_2:14680520-14680539 None:intergenic 30.0%
! GTGAGAGATTATAGTATTGA+CGG + chr5_2:14680591-14680610 None:intergenic 30.0%
TCGTGAATACTATGTTGCTA+TGG - chr5_2:14676418-14676437 Msa0759130:CDS 35.0%
AAACAAACTAATCTGGTACG+TGG + chr5_2:14676531-14676550 None:intergenic 35.0%
!! ACGTACCAGATTAGTTTGTT+TGG - chr5_2:14676530-14676549 Msa0759130:intron 35.0%
CAACCACATATGTTTGTGTT+TGG - chr5_2:14676649-14676668 Msa0759130:CDS 35.0%
GTACCAAACACAAACATATG+TGG + chr5_2:14676655-14676674 None:intergenic 35.0%
AAAATCACACACACAAATGG+AGG + chr5_2:14677311-14677330 None:intergenic 35.0%
!! CATTTTGCCAATGTTTCTGT+TGG - chr5_2:14677792-14677811 Msa0759130:intron 35.0%
CACATTTGGTACAATTGCAA+GGG + chr5_2:14677875-14677894 None:intergenic 35.0%
ACACATTTGGTACAATTGCA+AGG + chr5_2:14677876-14677895 None:intergenic 35.0%
AATTGTACCAAATGTGTCCA+TGG - chr5_2:14677879-14677898 Msa0759130:CDS 35.0%
CAAAACTATACTGCAGAGAT+TGG - chr5_2:14677966-14677985 Msa0759130:CDS 35.0%
ACATCTTAATACCCCTACTT+AGG + chr5_2:14678008-14678027 None:intergenic 35.0%
!! AAGTAGGGGTATTAAGATGT+CGG - chr5_2:14678008-14678027 Msa0759130:CDS 35.0%
!! TACTTCAACTACTGGTTTCT+TGG - chr5_2:14678299-14678318 Msa0759130:CDS 35.0%
! GCTAACCCACTAATTACTTT+TGG - chr5_2:14678372-14678391 Msa0759130:CDS 35.0%
TTCCTCGCTAAGTTTAGTAA+TGG - chr5_2:14678427-14678446 Msa0759130:CDS 35.0%
TTCCATTACTAAACTTAGCG+AGG + chr5_2:14678432-14678451 None:intergenic 35.0%
ATTGAATGTGTTGCAGTTGT+GGG - chr5_2:14678589-14678608 Msa0759130:intron 35.0%
CAAGTATCTTAGCCAAACAA+GGG - chr5_2:14678691-14678710 Msa0759130:intron 35.0%
! ATTTGAAGTTAGCCCTTGTT+TGG + chr5_2:14678706-14678725 None:intergenic 35.0%
!!! TCAATGTGTTTTGGTGATGA+TGG - chr5_2:14678732-14678751 Msa0759130:intron 35.0%
!!! TGTTTTGGTGATGATGGTTT+GGG - chr5_2:14678738-14678757 Msa0759130:intron 35.0%
GTTTGGGAAGAATCACATTT+GGG - chr5_2:14678754-14678773 Msa0759130:CDS 35.0%
TTTGGGAAGAATCACATTTG+GGG - chr5_2:14678755-14678774 Msa0759130:CDS 35.0%
TGGGGATAATAATAGTAGCT+TGG - chr5_2:14678773-14678792 Msa0759130:CDS 35.0%
AATAATAGTAGCTTGGACCA+AGG - chr5_2:14678780-14678799 Msa0759130:CDS 35.0%
TAGCAGCTTGGATAATGTTA+AGG - chr5_2:14678881-14678900 Msa0759130:intron 35.0%
ACTGTCACCCAAATTATTGT+GGG - chr5_2:14679052-14679071 Msa0759130:intron 35.0%
!! GAGTAATTTGCTTATAAGCC+GGG + chr5_2:14679147-14679166 None:intergenic 35.0%
AAGTCATAGCAGTACTCAAA+GGG + chr5_2:14679327-14679346 None:intergenic 35.0%
TAAGTCATAGCAGTACTCAA+AGG + chr5_2:14679328-14679347 None:intergenic 35.0%
! TTGAGTACTGCTATGACTTA+AGG - chr5_2:14679328-14679347 Msa0759130:intron 35.0%
TATATCCAACAATCAGTGCT+TGG + chr5_2:14679409-14679428 None:intergenic 35.0%
! CACTGATTGTTGGATATAGT+TGG - chr5_2:14679411-14679430 Msa0759130:intron 35.0%
ATTCTTGTGGTATTCATTCC+AGG - chr5_2:14679804-14679823 Msa0759130:intron 35.0%
TTCTTGTGGTATTCATTCCA+GGG - chr5_2:14679805-14679824 Msa0759130:intron 35.0%
AAAGAACATTGTTAACACCC+TGG + chr5_2:14679825-14679844 None:intergenic 35.0%
ATACAATCTACCCCTTCAAA+TGG - chr5_2:14680239-14680258 Msa0759130:CDS 35.0%
AGAACCTGCATTAGCATTTA+CGG - chr5_2:14680298-14680317 Msa0759130:CDS 35.0%
GCGTGTGAAGTAAATGTCAA+TGG + chr5_2:14676086-14676105 None:intergenic 40.0%
!! TGCCATGGTTCTAGTTCATT+CGG - chr5_2:14676320-14676339 Msa0759130:CDS 40.0%
AACCGAATGAACTAGAACCA+TGG + chr5_2:14676325-14676344 None:intergenic 40.0%
ATACCCAAAATACCCTTCAC+CGG + chr5_2:14676374-14676393 None:intergenic 40.0%
TATTGAGAACGTTCCTGACA+AGG - chr5_2:14676391-14676410 Msa0759130:CDS 40.0%
ATTGAGAACGTTCCTGACAA+GGG - chr5_2:14676392-14676411 Msa0759130:CDS 40.0%
GCTGATTGAGCTAAGACTTA+TGG + chr5_2:14677241-14677260 None:intergenic 40.0%
TGGTGTTCCAACAGAAACAT+TGG + chr5_2:14677802-14677821 None:intergenic 40.0%
CTCTATACCATGGACACATT+TGG + chr5_2:14677889-14677908 None:intergenic 40.0%
!! CTGTTGATAGCTCTATACCA+TGG + chr5_2:14677899-14677918 None:intergenic 40.0%
CATGGTATAGAGCTATCAAC+AGG - chr5_2:14677897-14677916 Msa0759130:CDS 40.0%
TATAGAGCTATCAACAGGAC+AGG - chr5_2:14677902-14677921 Msa0759130:CDS 40.0%
!! AACTACTGGTTTCTTGGTAG+AGG - chr5_2:14678305-14678324 Msa0759130:CDS 40.0%
CATTGAATGTGTTGCAGTTG+TGG - chr5_2:14678588-14678607 Msa0759130:intron 40.0%
! CCTTGTTTGGCTAAGATACT+TGG + chr5_2:14678693-14678712 None:intergenic 40.0%
CCAAGTATCTTAGCCAAACA+AGG - chr5_2:14678690-14678709 Msa0759130:intron 40.0%
!!! GTGTTTTGGTGATGATGGTT+TGG - chr5_2:14678737-14678756 Msa0759130:intron 40.0%
GGTTTGGGAAGAATCACATT+TGG - chr5_2:14678753-14678772 Msa0759130:CDS 40.0%
ACAATAACCACTTACTGCGA+CGG + chr5_2:14678828-14678847 None:intergenic 40.0%
CACTGTCACCCAAATTATTG+TGG - chr5_2:14679051-14679070 Msa0759130:intron 40.0%
!! AATCACCAAGCACTGATTGT+TGG - chr5_2:14679401-14679420 Msa0759130:intron 40.0%
CAGCTGATACACTTTACAGT+TGG + chr5_2:14679581-14679600 None:intergenic 40.0%
CATTGGGAACTTCAATTGTC+TGG + chr5_2:14679642-14679661 None:intergenic 40.0%
! GTTAACTTGACGATGAAAGG+TGG - chr5_2:14679661-14679680 Msa0759130:intron 40.0%
ATGGACCCGATAATAACAAG+TGG - chr5_2:14679700-14679719 Msa0759130:intron 40.0%
!! ACCCTGCCACTTGTTATTAT+CGG + chr5_2:14679709-14679728 None:intergenic 40.0%
CATGCAGAAAACTTCATGAC+TGG - chr5_2:14679981-14680000 Msa0759130:intron 40.0%
! AAAACTTCATGACTGGCTAC+CGG - chr5_2:14679988-14680007 Msa0759130:intron 40.0%
TCTCGCGATCAAAAACTATC+CGG + chr5_2:14680010-14680029 None:intergenic 40.0%
GAAGGGGTAGATTGTATTTC+AGG + chr5_2:14680236-14680255 None:intergenic 40.0%
! TCTTTGAGGACCATTTGAAG+GGG + chr5_2:14680252-14680271 None:intergenic 40.0%
! GTCTTTGAGGACCATTTGAA+GGG + chr5_2:14680253-14680272 None:intergenic 40.0%
! AGTCTTTGAGGACCATTTGA+AGG + chr5_2:14680254-14680273 None:intergenic 40.0%
TGACTAGATGGAAGTCTTTG+AGG + chr5_2:14680266-14680285 None:intergenic 40.0%
TCGGTTTCGATATCCACCAT+CGG - chr5_2:14676339-14676358 Msa0759130:CDS 45.0%
!!! TGATCCGGTGAAGGGTATTT+TGG - chr5_2:14676367-14676386 Msa0759130:CDS 45.0%
!!! GATCCGGTGAAGGGTATTTT+GGG - chr5_2:14676368-14676387 Msa0759130:CDS 45.0%
TATTCACGACTTCCCTTGTC+AGG + chr5_2:14676407-14676426 None:intergenic 45.0%
!! ATCTGGTACGTGGTGTTATC+TGG + chr5_2:14676521-14676540 None:intergenic 45.0%
CACACACAAATGGAGGAGTT+GGG + chr5_2:14677304-14677323 None:intergenic 45.0%
ACACACACAAATGGAGGAGT+TGG + chr5_2:14677305-14677324 None:intergenic 45.0%
GCAACAAGATACGATGAAGC+TGG + chr5_2:14677822-14677841 None:intergenic 45.0%
!! ATACTGGGAGTGACTTGTTC+TGG - chr5_2:14677847-14677866 Msa0759130:CDS 45.0%
GCAAGCTTGTGACCTAAGTA+GGG - chr5_2:14677993-14678012 Msa0759130:CDS 45.0%
CAAGCTTGTGACCTAAGTAG+GGG - chr5_2:14677994-14678013 Msa0759130:CDS 45.0%
!! AGGGGTATTAAGATGTCGGA+AGG - chr5_2:14678012-14678031 Msa0759130:CDS 45.0%
! GCAGGCAACATTTTTGCTAG+TGG + chr5_2:14678193-14678212 None:intergenic 45.0%
CTCACATAAGCTGCTATTGC+AGG + chr5_2:14678211-14678230 None:intergenic 45.0%
ACACAGTGCTCTTCTTCATC+TGG - chr5_2:14678237-14678256 Msa0759130:intron 45.0%
AGTTGTGGGCAAGTTCAAAC+AGG - chr5_2:14678603-14678622 Msa0759130:intron 45.0%
GTTGTGGGCAAGTTCAAACA+GGG - chr5_2:14678604-14678623 Msa0759130:intron 45.0%
TTGTGGGCAAGTTCAAACAG+GGG - chr5_2:14678605-14678624 Msa0759130:intron 45.0%
! AGTTCAAACAGGGGCTTTTC+TGG - chr5_2:14678614-14678633 Msa0759130:intron 45.0%
! AAACAGGGGCTTTTCTGGAT+GGG - chr5_2:14678619-14678638 Msa0759130:intron 45.0%
CCTAGTCCAAACAGACCATT+TGG + chr5_2:14678651-14678670 None:intergenic 45.0%
CCAAATGGTCTGTTTGGACT+AGG - chr5_2:14678648-14678667 Msa0759130:intron 45.0%
TGCGACGGCCTAATATTGAA+TGG + chr5_2:14678813-14678832 None:intergenic 45.0%
!! CCTTTGAGGTTAATTTGGGC+AGG + chr5_2:14678933-14678952 None:intergenic 45.0%
CCTGCCCAAATTAACCTCAA+AGG - chr5_2:14678930-14678949 Msa0759130:intron 45.0%
GTCACCCAAATTATTGTGGG+AGG - chr5_2:14679055-14679074 Msa0759130:intron 45.0%
TGCATTGAACTCCAGATCAG+CGG + chr5_2:14679086-14679105 None:intergenic 45.0%
ACCCGATAATAACAAGTGGC+AGG - chr5_2:14679704-14679723 Msa0759130:intron 45.0%
!! CCCTGCCACTTGTTATTATC+GGG + chr5_2:14679708-14679727 None:intergenic 45.0%
CCCGATAATAACAAGTGGCA+GGG - chr5_2:14679705-14679724 Msa0759130:intron 45.0%
! GAACATGACTCTAGGTTGGA+AGG - chr5_2:14680028-14680047 Msa0759130:intron 45.0%
ACCTGCATTAGCATTTACGG+TGG - chr5_2:14680301-14680320 Msa0759130:CDS 45.0%
!!! AATTTTAAACTAATAAAAAA+GGG + chr5_2:14677498-14677517 None:intergenic 5.0%
!!! AAATTTTAAACTAATAAAAA+AGG + chr5_2:14677499-14677518 None:intergenic 5.0%
!!! AAAATTCATATTTTTTTAAT+GGG - chr5_2:14677545-14677564 Msa0759130:CDS 5.0%
TCACAATCACGTACGTGCCA+TGG - chr5_2:14676305-14676324 Msa0759130:exon 50.0%
!!! CCACCATCGGTTTTCTGATC+CGG - chr5_2:14676352-14676371 Msa0759130:CDS 50.0%
TCACCGGATCAGAAAACCGA+TGG + chr5_2:14676358-14676377 None:intergenic 50.0%
! TCGGTTTTCTGATCCGGTGA+AGG - chr5_2:14676358-14676377 Msa0759130:CDS 50.0%
! CGGTTTTCTGATCCGGTGAA+GGG - chr5_2:14676359-14676378 Msa0759130:CDS 50.0%
CCGAAAAACACGGTCTCTGT+GGG + chr5_2:14676444-14676463 None:intergenic 50.0%
! CCCACAGAGACCGTGTTTTT+CGG - chr5_2:14676441-14676460 Msa0759130:CDS 50.0%
! CCACAGAGACCGTGTTTTTC+GGG - chr5_2:14676442-14676461 Msa0759130:CDS 50.0%
! CACAGAGACCGTGTTTTTCG+GGG - chr5_2:14676443-14676462 Msa0759130:CDS 50.0%
CGCAAGCTTGTGACCTAAGT+AGG - chr5_2:14677992-14678011 Msa0759130:CDS 50.0%
CAGTGCTCTTCTTCATCTGG+TGG - chr5_2:14678240-14678259 Msa0759130:intron 50.0%
! CAAACAGGGGCTTTTCTGGA+TGG - chr5_2:14678618-14678637 Msa0759130:intron 50.0%
! AACAGGGGCTTTTCTGGATG+GGG - chr5_2:14678620-14678639 Msa0759130:intron 50.0%
GCAGCTCCAAATGGTCTGTT+TGG - chr5_2:14678642-14678661 Msa0759130:intron 50.0%
TATTAGGCCGTCGCAGTAAG+TGG - chr5_2:14678818-14678837 Msa0759130:CDS 50.0%
GATCGCGAGAACATGACTCT+AGG - chr5_2:14680020-14680039 Msa0759130:intron 50.0%
GCGAGAACATGACTCTAGGT+TGG - chr5_2:14680024-14680043 Msa0759130:intron 50.0%
GCCACCGTAAATGCTAATGC+AGG + chr5_2:14680305-14680324 None:intergenic 50.0%
CCGGATCAGAAAACCGATGG+TGG + chr5_2:14676355-14676374 None:intergenic 55.0%
CCCGAAAAACACGGTCTCTG+TGG + chr5_2:14676445-14676464 None:intergenic 55.0%
!!! GAGACCGTGTTTTTCGGGGT+CGG - chr5_2:14676447-14676466 Msa0759130:CDS 55.0%
GGGAGGAAATTCCGCTGATC+TGG - chr5_2:14679072-14679091 Msa0759130:intron 55.0%
CATAGCAGGAGACACAGCTG+GGG + chr5_2:14680204-14680223 None:intergenic 55.0%
CCATAGCAGGAGACACAGCT+GGG + chr5_2:14680205-14680224 None:intergenic 55.0%
AGCTGTGTCTCCTGCTATGG+CGG - chr5_2:14680205-14680224 Msa0759130:CDS 55.0%
TCAGGATTCACCGCCATAGC+AGG + chr5_2:14680218-14680237 None:intergenic 55.0%
GACGCCGACCCCGAAAAACA+CGG + chr5_2:14676454-14676473 None:intergenic 60.0%
CTGGATGGGGCAGCTCCAAA+TGG - chr5_2:14678633-14678652 Msa0759130:intron 60.0%
CCCAGCTGTGTCTCCTGCTA+TGG - chr5_2:14680202-14680221 Msa0759130:CDS 60.0%
GCCATAGCAGGAGACACAGC+TGG + chr5_2:14680206-14680225 None:intergenic 60.0%
GGGGCGTGCGATCGGTTAAC+AGG + chr5_2:14680185-14680204 None:intergenic 65.0%
ACACAGCTGGGGCGTGCGAT+CGG + chr5_2:14680193-14680212 None:intergenic 65.0%
CGGGGTCGGCGTCTTGCTGA+CGG - chr5_2:14676461-14676480 Msa0759130:CDS 70.0%
GGTCGGCGTCTTGCTGACGG+TGG - chr5_2:14676464-14676483 Msa0759130:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 14676051 14680624 14676051 ID=Msa0759130;Name=Msa0759130
chr5_2 mRNA 14676051 14680624 14676051 ID=Msa0759130-mRNA-1;Parent=Msa0759130;Name=Msa0759130-mRNA-1;_AED=0.07;_eAED=0.07;_QI=173|1|1|1|1|1|10|266|527
chr5_2 exon 14676051 14676519 14676051 ID=Msa0759130-mRNA-1:exon:6661;Parent=Msa0759130-mRNA-1
chr5_2 exon 14676616 14676687 14676616 ID=Msa0759130-mRNA-1:exon:6660;Parent=Msa0759130-mRNA-1
chr5_2 exon 14676789 14676849 14676789 ID=Msa0759130-mRNA-1:exon:6659;Parent=Msa0759130-mRNA-1
chr5_2 exon 14676949 14677042 14676949 ID=Msa0759130-mRNA-1:exon:6658;Parent=Msa0759130-mRNA-1
chr5_2 exon 14677326 14677405 14677326 ID=Msa0759130-mRNA-1:exon:6657;Parent=Msa0759130-mRNA-1
chr5_2 exon 14677504 14677639 14677504 ID=Msa0759130-mRNA-1:exon:6656;Parent=Msa0759130-mRNA-1
chr5_2 exon 14677843 14678070 14677843 ID=Msa0759130-mRNA-1:exon:6655;Parent=Msa0759130-mRNA-1
chr5_2 exon 14678281 14678522 14678281 ID=Msa0759130-mRNA-1:exon:6654;Parent=Msa0759130-mRNA-1
chr5_2 exon 14678752 14678887 14678752 ID=Msa0759130-mRNA-1:exon:6653;Parent=Msa0759130-mRNA-1
chr5_2 exon 14680120 14680624 14680120 ID=Msa0759130-mRNA-1:exon:6652;Parent=Msa0759130-mRNA-1
chr5_2 five_prime_UTR 14680452 14680624 14680452 ID=Msa0759130-mRNA-1:five_prime_utr;Parent=Msa0759130-mRNA-1
chr5_2 CDS 14680120 14680451 14680120 ID=Msa0759130-mRNA-1:cds;Parent=Msa0759130-mRNA-1
chr5_2 CDS 14678752 14678887 14678752 ID=Msa0759130-mRNA-1:cds;Parent=Msa0759130-mRNA-1
chr5_2 CDS 14678281 14678522 14678281 ID=Msa0759130-mRNA-1:cds;Parent=Msa0759130-mRNA-1
chr5_2 CDS 14677843 14678070 14677843 ID=Msa0759130-mRNA-1:cds;Parent=Msa0759130-mRNA-1
chr5_2 CDS 14677504 14677639 14677504 ID=Msa0759130-mRNA-1:cds;Parent=Msa0759130-mRNA-1
chr5_2 CDS 14677326 14677405 14677326 ID=Msa0759130-mRNA-1:cds;Parent=Msa0759130-mRNA-1
chr5_2 CDS 14676949 14677042 14676949 ID=Msa0759130-mRNA-1:cds;Parent=Msa0759130-mRNA-1
chr5_2 CDS 14676789 14676849 14676789 ID=Msa0759130-mRNA-1:cds;Parent=Msa0759130-mRNA-1
chr5_2 CDS 14676616 14676687 14676616 ID=Msa0759130-mRNA-1:cds;Parent=Msa0759130-mRNA-1
chr5_2 CDS 14676317 14676519 14676317 ID=Msa0759130-mRNA-1:cds;Parent=Msa0759130-mRNA-1
chr5_2 three_prime_UTR 14676051 14676316 14676051 ID=Msa0759130-mRNA-1:three_prime_utr;Parent=Msa0759130-mRNA-1
Gene Sequence

>Msa0759130

ATGGCTTTTCTTTCTATCTTCTACCAAACCCATAATTCTCTATATGTTTCAGTGTTATTAACGTTAATACTATGTTTAATTTCACAATCACGTACGTGCCATGGTTCTAGTTCATTCGGTTTCGATATCCACCATCGGTTTTCTGATCCGGTGAAGGGTATTTTGGGTATTGAGAACGTTCCTGACAAGGGAAGTCGTGAATACTATGTTGCTATGGCCCACAGAGACCGTGTTTTTCGGGGTCGGCGTCTTGCTGACGGTGGTGATGTTGATCAGAAGCTTCTTACGTTTTCTCCAGATAACACCACGTACCAGATTAGTTTGTTTGGATATTTGCATTTTGCCAATGTTTCTGTTGGAACACCAGCTTCATCGTATCTTGTTGCATTAGATACTGGGAGTGACTTGTTCTGGCTCCCTTGCAATTGTACCAAATGTGTCCATGGTATAGAGCTATCAACAGGACAGAAAATTGCTTTTAATATCTATGATAACAAAGAATCATCCACTAGCAAAAATGTTGCCTGCAATAGCAGCTTATGTGAGCAGAAGACACAGTGCTCTTCTTCATCTGGTGGCACTTGTCCATATCAAGTTGAATATCTATCAGAAAATACTTCAACTACTGGTTTCTTGGTAGAGGATGTGTTGCACCTAATTACAGATAATGATGATCAAACTCAACATGCTAACCCACTAATTACTTTTGGTTGTGGGCAAGTTCAAACAGGGGCTTTTCTGGATGGGGCAGCTCCAAATGGTCTGTTTGGACTAGGAATGAGTGATGTATCTGTTCCAAGTATCTTAGCCAAACAAGGGCTAACTTCAAATTCTTTTTCAATGTGTTTTGGTGATGATGGTTTGGGAAGAATCACATTTGGGGATAATAATAGTAGCTTGGACCAAGGAAAAACACCATTCAATATTAGGCCGTCGCATTCAACTTACAACATCACTGTCACCCAAATTATTGTGGGAGGAAATTCCGCTGATCTGGAGTTCAATGCAATATTCGATACTGGTACCTCATTTACATACTTAAACAACCCGGCTTATAAGCAAATTACTCAAAGTTTTGATTCAAAAATTAAACTACAAAGGCATTCATTTTCTGATTCTGATGATCTTCCCTTTGAGTACTGCTATGACTTAAGAACAAACCAGACAATTGAAGTTCCCAATGTTAACTTGACGATGAAAGGTGGAGACAATTATTTTGTCATGGACCCGATAATAACAAGTGGCAGGGGTGTTAACAATGTTCTTTGTTTGGCTGTTTTGAAAAGCAACAATGTGAATATCATTGGACAAAACTTCATGACTGGCTACCGGATAGTTTTTGATCGCGAGAACATGACTCTAGGTTGGAAGGAATCTAACTGTTATGATGATGAACTCTCGAGTTTACCTGTTAACCGATCGCACGCCCCAGCTGTGTCTCCTGCTATGGCGGTGAATCCTGAAATACAATCTACCCCTTCAAATGGTCCTCAAAGACTTCCATCTAGTCACTCATTTAAGAAAGAACCTGCATTAGCATTTACGGTGGCAATTATCCTGCTTTTAGCAAATTTTTTAGCATAG
Protein sequence

>Msa0759130

MAFLSIFYQTHNSLYVSVLLTLILCLISQSRTCHGSSSFGFDIHHRFSDPVKGILGIENVPDKGSREYYVAMAHRDRVFRGRRLADGGDVDQKLLTFSPDNTTYQISLFGYLHFANVSVGTPASSYLVALDTGSDLFWLPCNCTKCVHGIELSTGQKIAFNIYDNKESSTSKNVACNSSLCEQKTQCSSSSGGTCPYQVEYLSENTSTTGFLVEDVLHLITDNDDQTQHANPLITFGCGQVQTGAFLDGAAPNGLFGLGMSDVSVPSILAKQGLTSNSFSMCFGDDGLGRITFGDNNSSLDQGKTPFNIRPSHSTYNITVTQIIVGGNSADLEFNAIFDTGTSFTYLNNPAYKQITQSFDSKIKLQRHSFSDSDDLPFEYCYDLRTNQTIEVPNVNLTMKGGDNYFVMDPIITSGRGVNNVLCLAVLKSNNVNIIGQNFMTGYRIVFDRENMTLGWKESNCYDDELSSLPVNRSHAPAVSPAMAVNPEIQSTPSNGPQRLPSSHSFKKEPALAFTVAIILLLANFLA*