AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0838440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0838440 MtrunA17_Chr5g0406001 96.584 527 18 0 1 527 1 527 0.0 1036
Msa0838440 MtrunA17_Chr8g0371371 64.800 500 163 9 31 525 31 522 0.0 645
Msa0838440 MtrunA17_Chr8g0371351 47.348 509 241 13 33 526 20 516 2.62e-154 451
Msa0838440 MtrunA17_Chr3g0124421 38.497 439 253 12 37 466 25 455 1.43e-94 297
Msa0838440 MtrunA17_Chr5g0425141 37.219 489 273 16 38 513 24 491 2.82e-89 283
Msa0838440 MtrunA17_Chr6g0484731 28.198 383 219 17 112 461 191 550 3.31e-31 127
Msa0838440 MtrunA17_Chr1g0179751 26.812 414 258 15 75 461 74 469 8.72e-31 125
Msa0838440 MtrunA17_Chr4g0027681 29.082 392 224 18 112 474 77 443 8.93e-31 125
Msa0838440 MtrunA17_Chr7g0221681 27.007 411 246 17 112 486 72 464 1.68e-30 124
Msa0838440 MtrunA17_Chr7g0265331 27.178 482 286 21 72 522 45 492 5.46e-29 120
Msa0838440 MtrunA17_Chr5g0419291 26.681 461 279 18 19 461 9 428 2.18e-27 114
Msa0838440 MtrunA17_Chr2g0320621 27.765 443 263 21 72 486 43 456 1.32e-26 113
Msa0838440 MtrunA17_Chr1g0189381 27.865 384 220 19 112 461 69 429 3.51e-26 111
Msa0838440 MtrunA17_Chr3g0095891 27.792 385 218 15 113 461 98 458 6.80e-26 110
Msa0838440 MtrunA17_Chr3g0130931 27.373 453 262 17 34 461 38 448 8.42e-26 110
Msa0838440 MtrunA17_Chr5g0435871 25.895 475 286 19 10 461 3 434 2.46e-24 105
Msa0838440 MtrunA17_Chr3g0130741 28.261 368 219 17 117 461 89 434 8.63e-24 103
Msa0838440 MtrunA17_Chr7g0249451 26.247 381 229 14 112 461 71 430 2.27e-23 103
Msa0838440 MtrunA17_Chr5g0442921 26.382 398 226 14 106 463 185 555 4.82e-23 102
Msa0838440 MtrunA17_Chr8g0384731 27.273 385 229 17 114 473 73 431 5.04e-23 101
Msa0838440 MtrunA17_Chr2g0307991 26.735 389 235 18 96 461 43 404 4.04e-21 95.5
Msa0838440 MtrunA17_Chr8g0352671 25.265 471 285 20 15 461 9 436 4.16e-21 95.9
Msa0838440 MtrunA17_Chr5g0395911 26.431 367 231 15 113 461 68 413 5.21e-21 95.5
Msa0838440 MtrunA17_Chr5g0415951 27.869 366 215 16 119 461 95 434 7.10e-21 95.1
Msa0838440 MtrunA17_Chr3g0087851 26.842 380 228 16 106 461 83 436 1.67e-20 94.4
Msa0838440 MtrunA17_Chr8g0386441 26.632 383 226 16 99 461 82 429 1.96e-20 94.0
Msa0838440 MtrunA17_Chr4g0010951 24.505 404 232 14 112 461 61 445 3.63e-20 93.2
Msa0838440 MtrunA17_Chr2g0310801 26.776 366 228 16 113 461 91 433 4.42e-20 92.8
Msa0838440 MtrunA17_Chr4g0053721 25.110 454 262 21 108 525 77 488 1.32e-18 89.4
Msa0838440 MtrunA17_Chr8g0352661 26.250 480 279 26 12 461 2 436 3.10e-18 87.4
Msa0838440 MtrunA17_Chr7g0275731 26.596 376 216 17 113 461 142 484 3.85e-18 87.4
Msa0838440 MtrunA17_Chr5g0401601 24.582 419 230 19 119 486 95 478 4.69e-18 87.4
Msa0838440 MtrunA17_Chr2g0308001 24.515 412 252 18 106 493 52 428 6.02e-18 86.3
Msa0838440 MtrunA17_Chr1g0210201 26.400 375 211 17 113 461 132 467 2.87e-17 84.3
Msa0838440 MtrunA17_Chr2g0310821 25.967 362 227 14 113 461 109 442 4.45e-17 83.6
Msa0838440 MtrunA17_Chr3g0078321 25.916 382 222 19 122 473 69 419 5.36e-17 83.2
Msa0838440 MtrunA17_Chr6g0484901 26.703 367 219 14 113 461 157 491 5.91e-17 83.6
Msa0838440 MtrunA17_Chr6g0487471 25.389 386 221 18 113 465 87 438 6.49e-17 83.2
Msa0838440 MtrunA17_Chr8g0353261 26.613 372 215 17 113 461 97 433 1.10e-16 82.4
Msa0838440 MtrunA17_Chr1g0164401 28.610 374 204 17 113 461 93 428 1.35e-16 82.0
Msa0838440 MtrunA17_Chr1g0159791 26.064 376 234 15 109 461 55 409 1.40e-16 82.0
Msa0838440 MtrunA17_Chr8g0390761 23.876 356 225 13 114 451 118 445 8.10e-16 80.1
Msa0838440 MtrunA17_Chr2g0333991 23.890 473 285 21 19 460 6 434 3.80e-15 77.8
Msa0838440 MtrunA17_Chr3g0099901 24.798 371 229 13 113 461 143 485 4.42e-15 77.8
Msa0838440 MtrunA17_Chr4g0023351 28.814 236 141 11 111 336 57 275 1.91e-14 73.9
Msa0838440 MtrunA17_Chr2g0312941 25.258 388 233 18 112 461 87 455 1.94e-14 75.5
Msa0838440 MtrunA17_Chr1g0165201 25.668 374 220 15 113 461 129 469 1.97e-14 75.5
Msa0838440 MtrunA17_Chr2g0311451 23.573 403 233 16 91 461 76 435 2.78e-14 75.1
Msa0838440 MtrunA17_Chr7g0267171 24.500 400 220 18 116 461 94 465 1.21e-13 73.2
Msa0838440 MtrunA17_Chr2g0291201 25.067 375 229 17 113 461 103 451 1.33e-13 73.2
Msa0838440 MtrunA17_Chr7g0239001 25.065 383 214 18 115 458 62 410 1.06e-12 70.1
Msa0838440 MtrunA17_Chr3g0099891 25.936 374 215 18 113 461 118 454 1.28e-12 70.1
Msa0838440 MtrunA17_Chr6g0486981 24.066 482 289 25 10 461 2 436 4.00e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0838440 AT2G17760.1 53.737 495 218 8 32 522 26 513 6.70e-177 508
Msa0838440 AT4G35880.1 50.881 454 211 9 17 465 9 455 7.25e-154 450
Msa0838440 AT4G35880.2 49.180 427 205 8 17 438 9 428 2.32e-136 402
Msa0838440 AT3G51330.1 48.874 444 211 12 31 465 21 457 1.07e-131 393
Msa0838440 AT3G51330.3 48.864 440 209 12 31 461 21 453 3.63e-130 387
Msa0838440 AT3G51350.1 47.416 445 215 14 31 465 21 456 4.93e-129 387
Msa0838440 AT3G51340.2 45.833 456 230 12 16 465 7 451 1.32e-128 385
Msa0838440 AT3G51360.1 44.612 464 236 12 24 481 7 455 7.57e-124 372
Msa0838440 AT3G51360.9 44.612 464 236 12 24 481 17 465 9.28e-124 372
Msa0838440 AT3G51340.1 44.421 466 234 14 16 465 7 463 6.67e-121 366
Msa0838440 AT3G51330.2 46.651 418 207 12 31 439 21 431 1.31e-112 342
Msa0838440 AT3G51360.10 43.735 423 217 12 24 440 7 414 3.89e-107 327
Msa0838440 AT3G51360.6 43.735 423 217 12 24 440 17 424 3.92e-107 327
Msa0838440 AT3G51340.3 44.059 404 210 11 16 414 7 399 2.08e-104 319
Msa0838440 AT3G51360.7 45.745 376 190 9 112 481 4 371 9.15e-103 315
Msa0838440 AT3G51340.4 45.745 376 191 10 16 386 7 374 3.06e-102 313
Msa0838440 AT3G51360.5 43.990 391 202 10 24 412 17 392 4.27e-102 313
Msa0838440 AT3G51360.4 43.990 391 202 10 24 412 7 382 4.60e-102 313
Msa0838440 AT3G51360.2 45.210 334 169 8 24 356 17 337 5.93e-91 282
Msa0838440 AT5G10080.1 36.157 484 271 15 22 487 8 471 3.71e-89 284
Msa0838440 AT3G51360.3 42.730 337 180 8 150 481 1 329 7.53e-80 254
Msa0838440 AT3G51360.8 42.730 337 180 8 150 481 1 329 7.53e-80 254
Msa0838440 AT3G02740.2 29.250 400 243 15 112 485 9 394 1.28e-34 135
Msa0838440 AT3G02740.1 29.574 399 243 15 112 485 84 469 1.38e-34 136
Msa0838440 AT5G22850.1 27.473 455 277 19 72 500 46 473 4.00e-31 126
Msa0838440 AT5G36260.1 26.667 450 264 19 36 461 26 433 4.63e-31 126
Msa0838440 AT1G05840.1 29.570 372 228 15 112 461 79 438 1.28e-30 125
Msa0838440 AT4G33490.2 29.058 382 218 19 115 469 62 417 6.78e-29 119
Msa0838440 AT2G36670.2 27.427 412 264 16 72 461 59 457 8.89e-29 120
Msa0838440 AT2G36670.4 27.394 376 242 13 106 461 27 391 1.57e-28 118
Msa0838440 AT2G36670.3 27.394 376 242 13 106 461 27 391 1.57e-28 118
Msa0838440 AT2G36670.1 26.988 415 267 16 72 461 59 462 1.87e-28 119
Msa0838440 AT1G65240.1 27.763 371 230 14 112 461 73 426 2.00e-28 118
Msa0838440 AT1G49050.2 29.040 396 212 22 109 461 26 395 7.24e-28 115
Msa0838440 AT1G49050.1 28.645 391 214 22 112 461 202 568 1.36e-26 114
Msa0838440 AT1G08210.1 26.697 442 265 19 112 526 83 492 1.20e-25 110
Msa0838440 AT1G08210.3 26.697 442 265 19 112 526 131 540 1.53e-25 110
Msa0838440 AT1G08210.4 26.697 442 265 19 112 526 117 526 1.56e-25 110
Msa0838440 AT1G44130.1 28.767 365 222 16 117 461 53 399 8.96e-25 107
Msa0838440 AT3G54400.1 26.075 372 217 15 113 461 88 424 2.96e-24 105
Msa0838440 AT4G33490.1 27.198 364 219 17 115 456 59 398 1.66e-23 103
Msa0838440 AT3G50050.1 26.854 391 224 20 119 481 99 455 2.33e-23 104
Msa0838440 AT1G08210.2 25.373 469 264 20 112 526 83 519 4.57e-22 100
Msa0838440 AT2G42980.1 27.132 387 226 15 113 463 160 526 6.45e-22 99.8
Msa0838440 AT3G61820.1 28.534 382 207 18 113 461 135 483 8.43e-22 99.0
Msa0838440 AT5G43100.2 25.519 482 283 25 69 521 37 471 6.87e-21 96.3
Msa0838440 AT5G43100.1 26.013 469 266 25 69 504 37 457 1.18e-20 96.3
Msa0838440 AT2G03200.1 28.760 379 207 18 116 461 110 458 3.27e-20 94.0
Msa0838440 AT1G64830.1 28.912 377 206 19 113 461 86 428 5.32e-20 92.8
Msa0838440 AT1G49050.3 28.881 277 163 12 112 370 202 462 6.63e-20 92.8
Msa0838440 AT3G25700.1 23.232 396 227 17 113 461 84 449 8.85e-20 92.4
Msa0838440 AT4G30040.1 27.049 366 220 16 114 456 86 427 1.77e-19 91.3
Msa0838440 AT5G33340.1 26.913 379 213 17 113 461 90 434 5.70e-19 89.7
Msa0838440 AT1G01300.1 26.330 376 217 15 113 461 142 484 9.58e-19 89.7
Msa0838440 AT3G52500.1 23.881 402 225 12 115 461 92 467 9.97e-19 89.4
Msa0838440 AT3G59080.1 26.302 384 231 14 113 463 170 534 1.68e-18 89.0
Msa0838440 AT1G77480.2 24.267 375 243 16 109 461 64 419 2.36e-18 87.8
Msa0838440 AT5G10770.1 26.415 371 222 17 113 461 132 473 2.56e-18 88.2
Msa0838440 AT1G77480.1 24.403 377 240 16 109 461 64 419 2.67e-18 88.2
Msa0838440 AT5G10760.1 27.671 365 216 14 113 461 132 464 9.21e-18 86.3
Msa0838440 AT2G23945.1 28.065 310 179 15 112 402 95 379 9.43e-18 86.3
Msa0838440 AT5G07030.1 25.474 369 214 17 119 461 121 454 4.68e-17 84.3
Msa0838440 AT3G18490.1 26.596 376 212 18 113 461 162 500 2.73e-16 82.0
Msa0838440 AT3G20015.1 24.612 451 256 18 62 461 53 470 4.81e-16 81.3
Msa0838440 AT4G30030.1 25.538 372 222 15 114 461 79 419 7.58e-16 80.1
Msa0838440 AT1G25510.1 26.542 373 213 17 113 461 148 483 9.10e-16 80.5
Msa0838440 AT1G31450.1 23.077 416 252 17 78 461 62 441 2.60e-14 75.5
Msa0838440 AT1G09750.1 26.448 397 234 18 94 461 81 448 2.97e-14 75.5
Msa0838440 AT3G42550.1 21.447 387 223 14 108 475 73 397 4.83e-13 71.6
Msa0838440 AT2G28040.2 23.288 365 229 15 111 461 54 381 1.24e-12 70.1
Msa0838440 AT2G28040.1 23.288 365 229 15 111 461 63 390 1.84e-12 69.7
Msa0838440 AT5G45120.1 26.225 347 186 13 110 411 82 403 5.36e-12 68.6
Msa0838440 AT1G79720.1 26.615 387 207 19 113 461 135 482 1.72e-11 67.0
Msa0838440 AT5G02190.1 21.615 384 234 13 122 461 82 442 2.25e-11 66.6

Find 122 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAGATCTCTATTATATT+TGG 0.103631 5_4:-12810432 Msa0838440:three_prime_UTR
AATTTCCTCCCACGATAATT+TGG 0.170326 5_4:+12811911 None:intergenic
GAAGGGGTAGATTGTATTTC+AGG 0.187188 5_4:+12810738 None:intergenic
TGATCCGGTGAAGGGTATTT+TGG 0.196341 5_4:-12814585 Msa0838440:CDS
CTGAAACATATAAAGAATTA+TGG 0.204200 5_4:+12814699 None:intergenic
GATCATCATTATCTGTAATT+AGG 0.222151 5_4:+12812634 None:intergenic
GCTAACCCACTAATTACTTT+TGG 0.224798 5_4:-12812600 Msa0838440:CDS
TATCTTGTTGCATTAGATAC+TGG 0.267458 5_4:-12813141 Msa0838440:CDS
GATAGATATTCAACTTGATA+TGG 0.275532 5_4:+12812702 None:intergenic
ATCTGGTACGTGGTGTTATC+TGG 0.281632 5_4:+12814434 None:intergenic
AAAATTTCGGAAAATATATA+TGG 0.291561 5_4:+12814807 None:intergenic
TACTTCAACTACTGGTTTCT+TGG 0.296582 5_4:-12812673 Msa0838440:CDS
TATACCACATAATTTGTCTT+TGG 0.297226 5_4:-12810458 Msa0838440:three_prime_UTR
ACCCTGCCACTTGTTATTAT+CGG 0.308776 5_4:+12811265 None:intergenic
CTCACATAAGCTGCTATTGC+AGG 0.328660 5_4:+12812764 None:intergenic
ATACTGGGAGTGACTTGTTC+TGG 0.342280 5_4:-12813125 Msa0838440:CDS
TATAGTCTTAGGGTTCAAAT+TGG 0.344034 5_4:+12810361 None:intergenic
GCAGCTCCAAATGGTCTGTT+TGG 0.347954 5_4:-12812330 Msa0838440:CDS
GTTTGGGAAGAATCACATTT+GGG 0.350381 5_4:-12812218 Msa0838440:CDS
CCTTGTTTGGCTAAGATACT+TGG 0.362835 5_4:+12812282 None:intergenic
TTCTTAAATGAGTGACTAGA+TGG 0.366521 5_4:+12810696 None:intergenic
CATTGGGAACTTCAATTGTC+TGG 0.371141 5_4:+12811332 None:intergenic
AGAACCTGCATTAGCATTTA+CGG 0.372839 5_4:-12810673 Msa0838440:CDS
ATTTCCTCCCACGATAATTT+GGG 0.378677 5_4:+12811912 None:intergenic
ACGTACCAGATTAGTTTGTT+TGG 0.379494 5_4:-12814422 Msa0838440:CDS
TTGAGTACTGCTATGACTTA+AGG 0.381947 5_4:-12811643 Msa0838440:intron
TGAAACATATAAAGAATTAT+GGG 0.382201 5_4:+12814700 None:intergenic
ATTTGAAGTTAGCCCTTGTT+TGG 0.382291 5_4:+12812269 None:intergenic
GGGAGGAAATTCCGCTGATC+TGG 0.387568 5_4:-12811899 Msa0838440:CDS
TGTTAACAATGTTCTTTGTT+TGG 0.388665 5_4:-12811143 Msa0838440:CDS
AGCAACAATGTGAATATCAT+TGG 0.391322 5_4:-12811109 Msa0838440:CDS
GGTTTGGGAAGAATCACATT+TGG 0.393676 5_4:-12812219 Msa0838440:CDS
GGGGCGTGCGATCGGTTAAC+AGG 0.398760 5_4:+12810789 None:intergenic
AGTTGTGGGCAAGTTCAAAC+AGG 0.401886 5_4:-12812369 Msa0838440:CDS
CCTAGTCCAAACAGACCATT+TGG 0.407470 5_4:+12812324 None:intergenic
ACTATCCAAACAAACTAATC+TGG 0.410497 5_4:+12814417 None:intergenic
TGCCATGGTTCTAGTTCATT+CGG 0.417426 5_4:-12814632 Msa0838440:CDS
CTCTATACCATGGACACATT+TGG 0.418622 5_4:+12813086 None:intergenic
TTCAATGCAATATTCGATAC+TGG 0.419948 5_4:-12811874 Msa0838440:CDS
CATATAAAGAATTATGGGTT+TGG 0.422858 5_4:+12814705 None:intergenic
CTGGATGGGGCAGCTCCAAA+TGG 0.437755 5_4:-12812339 Msa0838440:CDS
TGACTAGATGGAAGTCTTTG+AGG 0.440995 5_4:+12810708 None:intergenic
AACTACTGGTTTCTTGGTAG+AGG 0.441070 5_4:-12812667 Msa0838440:CDS
TTCATCGTCAAGTTAACATT+GGG 0.443905 5_4:+12811316 None:intergenic
ACACAGTGCTCTTCTTCATC+TGG 0.446019 5_4:-12812735 Msa0838440:CDS
GTGAGAGATTATAGTATTGA+CGG 0.449278 5_4:+12810383 None:intergenic
TATTCACGACTTCCCTTGTC+AGG 0.449376 5_4:+12814548 None:intergenic
CCCTGCCACTTGTTATTATC+GGG 0.450581 5_4:+12811266 None:intergenic
CCAAATGGTCTGTTTGGACT+AGG 0.469915 5_4:-12812324 Msa0838440:CDS
TGAGTAATTTGCTTATAAGC+CGG 0.474988 5_4:+12811826 None:intergenic
CCCAGCTGTGTCTCCTGCTA+TGG 0.476244 5_4:-12810769 Msa0838440:CDS
CGGGGTCGGCGTCTTGCTGA+CGG 0.476845 5_4:-12814491 Msa0838440:CDS
TCAGGATTCACCGCCATAGC+AGG 0.482898 5_4:+12810756 None:intergenic
CATGCAGAAAACTTCATGAC+TGG 0.483710 5_4:-12810990 Msa0838440:intron
AGTTACCCAAAAGTAATTAG+TGG 0.486929 5_4:+12812594 None:intergenic
TCAGAAAATACTTCAACTAC+TGG 0.487753 5_4:-12812681 Msa0838440:CDS
TTTCATCGTCAAGTTAACAT+TGG 0.489542 5_4:+12811315 None:intergenic
CTCATCATATTCATTCATCA+TGG 0.493531 5_4:-12814747 Msa0838440:exon
AGTCTTTGAGGACCATTTGA+AGG 0.496392 5_4:+12810720 None:intergenic
GAGTAATTTGCTTATAAGCC+GGG 0.497835 5_4:+12811827 None:intergenic
ATACAATCTACCCCTTCAAA+TGG 0.498025 5_4:-12810732 Msa0838440:CDS
ATCTTGTTGCATTAGATACT+GGG 0.501285 5_4:-12813140 Msa0838440:CDS
GCCATAGCAGGAGACACAGC+TGG 0.503097 5_4:+12810768 None:intergenic
TAAAGAATTATGGGTTTGGT+AGG 0.504483 5_4:+12814709 None:intergenic
CATGGTATAGAGCTATCAAC+AGG 0.505796 5_4:-12813075 Msa0838440:CDS
TATTACACGCATCTTGACTC+TGG 0.510722 5_4:-12814891 Msa0838440:five_prime_UTR
ACCCGATAATAACAAGTGGC+AGG 0.513201 5_4:-12811267 Msa0838440:CDS
AATGTTAACTTGACGATGAA+AGG 0.513228 5_4:-12811313 Msa0838440:CDS
CCATAGCAGGAGACACAGCT+GGG 0.513250 5_4:+12810769 None:intergenic
CCAAGTATCTTAGCCAAACA+AGG 0.519276 5_4:-12812282 Msa0838440:CDS
TGGGGATAATAATAGTAGCT+TGG 0.520297 5_4:-12812199 Msa0838440:CDS
AAGTCATAGCAGTACTCAAA+GGG 0.522967 5_4:+12811647 None:intergenic
GTTGTTTAAGTATGTAAATG+AGG 0.527623 5_4:+12811849 None:intergenic
ACACAGCTGGGGCGTGCGAT+CGG 0.529343 5_4:+12810781 None:intergenic
GTTTAATTTCACAATCACAT+AGG 0.529895 5_4:-12814655 Msa0838440:CDS
GTCTTTGAGGACCATTTGAA+GGG 0.534896 5_4:+12810721 None:intergenic
GTTACCCAAAAGTAATTAGT+GGG 0.541649 5_4:+12812595 None:intergenic
GCGAGAACATGACTCTAGGT+TGG 0.557604 5_4:-12810947 Msa0838440:CDS
GATCGCGAGAACATGACTCT+AGG 0.567796 5_4:-12810951 Msa0838440:CDS
TATTGAGAACGTTCCTGACA+AGG 0.569108 5_4:-12814561 Msa0838440:CDS
TCGTGAATACTATGTTGCTA+TGG 0.570427 5_4:-12814534 Msa0838440:CDS
GCCACCGTAAATGCTAATGC+AGG 0.574848 5_4:+12810669 None:intergenic
TCACAATCACATAGGTGCCA+TGG 0.575054 5_4:-12814647 Msa0838440:CDS
CACTGTCACCCAAATTATCG+TGG 0.576637 5_4:-12811920 Msa0838440:CDS
TGCGACGGCCTAATATTGAA+TGG 0.577927 5_4:+12812162 None:intergenic
CACATTTGGTACAATTGCAA+GGG 0.578522 5_4:+12813100 None:intergenic
ACACATTTGGTACAATTGCA+AGG 0.579567 5_4:+12813099 None:intergenic
ATACCCAAAATACCCTTCAC+CGG 0.579612 5_4:+12814581 None:intergenic
GCAACAAGATACGATGAAGC+TGG 0.584329 5_4:+12813153 None:intergenic
CAGTGCTCTTCTTCATCTGG+TGG 0.585118 5_4:-12812732 Msa0838440:CDS
GAATCCAAAGACAAATTATG+TGG 0.585265 5_4:+12810454 None:intergenic
TAAGTCATAGCAGTACTCAA+AGG 0.585485 5_4:+12811646 None:intergenic
AAAACTTCATGACTGGCTAC+CGG 0.586042 5_4:-12810983 Msa0838440:CDS
AGCTGTGTCTCCTGCTATGG+CGG 0.589379 5_4:-12810766 Msa0838440:CDS
GAACATGACTCTAGGTTGGA+AGG 0.591059 5_4:-12810943 Msa0838440:CDS
ACAATAACCACTTACTGCGA+CGG 0.595509 5_4:+12812147 None:intergenic
TGGTGTTCCAACAGAAACAT+TGG 0.596649 5_4:+12813173 None:intergenic
CCGGATCAGAAAACCGATGG+TGG 0.596699 5_4:+12814600 None:intergenic
TATAGAGCTATCAACAGGAC+AGG 0.606470 5_4:-12813070 Msa0838440:intron
CCCGATAATAACAAGTGGCA+GGG 0.610110 5_4:-12811266 Msa0838440:intron
AATAATAGTAGCTTGGACCA+AGG 0.612712 5_4:-12812192 Msa0838440:CDS
TCGGTTTCGATATCCACCAT+CGG 0.616803 5_4:-12814613 Msa0838440:CDS
AACCGAATGAACTAGAACCA+TGG 0.618540 5_4:+12814630 None:intergenic
GTTAACTTGACGATGAAAGG+TGG 0.618692 5_4:-12811310 Msa0838440:CDS
AATTGTACCAAATGTGTCCA+TGG 0.625959 5_4:-12813093 Msa0838440:CDS
TCACCGGATCAGAAAACCGA+TGG 0.631331 5_4:+12814597 None:intergenic
ATTGAGAACGTTCCTGACAA+GGG 0.643964 5_4:-12814560 Msa0838440:CDS
GTCACCCAAATTATCGTGGG+AGG 0.645755 5_4:-12811916 Msa0838440:CDS
ATTTACATACTTAAACAACC+CGG 0.646591 5_4:-12811845 Msa0838440:CDS
TGCATTGAACTCCAGATCAG+CGG 0.650143 5_4:+12811888 None:intergenic
ACTGTCACCCAAATTATCGT+GGG 0.652259 5_4:-12811919 Msa0838440:CDS
TTTGGGAAGAATCACATTTG+GGG 0.655444 5_4:-12812217 Msa0838440:CDS
GGTCGGCGTCTTGCTGACGG+TGG 0.660969 5_4:-12814488 Msa0838440:CDS
CTGTTGATAGCTCTATACCA+TGG 0.663638 5_4:+12813076 None:intergenic
GTTGTGGGCAAGTTCAAACA+GGG 0.666836 5_4:-12812368 Msa0838440:CDS
ATGGACCCGATAATAACAAG+TGG 0.685658 5_4:-12811271 Msa0838440:CDS
CATAGCAGGAGACACAGCTG+GGG 0.686306 5_4:+12810770 None:intergenic
ACCTGCATTAGCATTTACGG+TGG 0.694138 5_4:-12810670 Msa0838440:CDS
TCTTTGAGGACCATTTGAAG+GGG 0.697645 5_4:+12810722 None:intergenic
CAAGTATCTTAGCCAAACAA+GGG 0.698265 5_4:-12812281 Msa0838440:CDS
TTGTGGGCAAGTTCAAACAG+GGG 0.708328 5_4:-12812367 Msa0838440:CDS
AAACAAACTAATCTGGTACG+TGG 0.721432 5_4:+12814424 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAAATAATGTAATTAA+AGG + chr5_4:12811104-12811123 None:intergenic 10.0%
!! AAAATGAAAAGAATAATTAA+GGG + chr5_4:12811889-12811908 None:intergenic 10.0%
!! AAAAATGAAAAGAATAATTA+AGG + chr5_4:12811890-12811909 None:intergenic 10.0%
!!! TAATTATTCTTTTCATTTTT+TGG - chr5_4:12811890-12811909 Msa0838440:CDS 10.0%
!!! AATTATTCTTTTCATTTTTT+GGG - chr5_4:12811891-12811910 Msa0838440:CDS 10.0%
!! AAAATATTGTATAGTTAAAT+TGG + chr5_4:12812824-12812843 None:intergenic 10.0%
!!! ATAATTTTTAAATATGTAAC+TGG - chr5_4:12813489-12813508 Msa0838440:intron 10.0%
!! AAAATTTCGGAAAATATATA+TGG + chr5_4:12810466-12810485 None:intergenic 15.0%
!! TGAAACATATAAAGAATTAT+GGG + chr5_4:12810573-12810592 None:intergenic 15.0%
!! TATAACAAAAAATTAAGTAG+TGG + chr5_4:12810893-12810912 None:intergenic 15.0%
!!! TTTTAATTTCATCTTTTTTC+TGG - chr5_4:12810913-12810932 Msa0838440:intron 15.0%
!!! TTTTTAGAAAGAAAAAGATT+GGG - chr5_4:12811028-12811047 Msa0838440:intron 15.0%
!!! TTTCCATTTTAGATAATTTT+TGG - chr5_4:12811121-12811140 Msa0838440:CDS 15.0%
!! ATTCCAAAAATTATCTAAAA+TGG + chr5_4:12811127-12811146 None:intergenic 15.0%
!!! TTTGGAATTGAATATTTAAA+AGG - chr5_4:12811139-12811158 Msa0838440:CDS 15.0%
!! AACATTAATCTCTTAAATTT+AGG + chr5_4:12811417-12811436 None:intergenic 15.0%
!! ATCTAAAAAAAAATCTGATA+TGG - chr5_4:12811697-12811716 Msa0838440:CDS 15.0%
!!! GTTACTAAACATTTTTTTTT+TGG + chr5_4:12812760-12812779 None:intergenic 15.0%
!!! TTAACTATACAATATTTTTC+TGG - chr5_4:12812826-12812845 Msa0838440:intron 15.0%
!! ATTCAAAAATTAAACTACAA+AGG - chr5_4:12813573-12813592 Msa0838440:intron 15.0%
!!! TATATATTTTGAAGTACAAA+GGG + chr5_4:12814376-12814395 None:intergenic 15.0%
!! AATTATGTTATGTTATTATC+AGG - chr5_4:12814433-12814452 Msa0838440:CDS 15.0%
!!! TATTACTATACATTTTTTTC+TGG - chr5_4:12814727-12814746 Msa0838440:CDS 15.0%
!! CTGAAACATATAAAGAATTA+TGG + chr5_4:12810574-12810593 None:intergenic 20.0%
!!! CTTTTTAGAAAGAAAAAGAT+TGG - chr5_4:12811027-12811046 Msa0838440:intron 20.0%
!!! ACTTTTTCTTTGTAAATCTA+AGG + chr5_4:12811281-12811300 None:intergenic 20.0%
!!! TTCATTTTTTTTTTATTGGG+AGG - chr5_4:12811847-12811866 Msa0838440:CDS 20.0%
!! ATGAATCTAAAAATACTTGA+TGG - chr5_4:12811963-12811982 Msa0838440:intron 20.0%
!! TGAATCTAAAAATACTTGAT+GGG - chr5_4:12811964-12811983 Msa0838440:intron 20.0%
!!! TGGTTTTGATACATTTTTTT+TGG + chr5_4:12812350-12812369 None:intergenic 20.0%
!! TACAAGATTAAACTATAGTA+TGG + chr5_4:12812370-12812389 None:intergenic 20.0%
!!! AATTCTTTTTCAATGTGTTT+TGG - chr5_4:12813021-12813040 Msa0838440:intron 20.0%
!! TTAATTAATAAGAACTCAAG+TGG + chr5_4:12813529-12813548 None:intergenic 20.0%
!!! CTATATATTTTGAAGTACAA+AGG + chr5_4:12814377-12814396 None:intergenic 20.0%
!! AATAACTAATGGAGAATTAA+AGG + chr5_4:12814403-12814422 None:intergenic 20.0%
!! TTCTCATTAACAATAACTAA+TGG + chr5_4:12814414-12814433 None:intergenic 20.0%
!! CTTAAGATCTCTATTATATT+TGG - chr5_4:12814838-12814857 Msa0838440:five_prime_UTR 20.0%
!! ACGTAGTTATGTTTTATATG+CGG + chr5_4:12810423-12810442 None:intergenic 25.0%
! CGTGTGATATGAAAAAATTT+CGG + chr5_4:12810479-12810498 None:intergenic 25.0%
! CATATAAAGAATTATGGGTT+TGG + chr5_4:12810568-12810587 None:intergenic 25.0%
!! GTTTAATTTCACAATCACAT+AGG - chr5_4:12810615-12810634 Msa0838440:three_prime_UTR 25.0%
! ATAAAGTTCATAGAATCACA+CGG - chr5_4:12810997-12811016 Msa0838440:intron 25.0%
! GTAATTAAAGGCTAAAGATT+TGG + chr5_4:12811092-12811111 None:intergenic 25.0%
! TATACTACACTAAATTGTAC+AGG - chr5_4:12811225-12811244 Msa0838440:intron 25.0%
!!! TGTGTTATTTGACAACTTAT+AGG - chr5_4:12811251-12811270 Msa0838440:intron 25.0%
! GAGAGAAATTTGTCATAAAA+TGG - chr5_4:12811360-12811379 Msa0838440:intron 25.0%
!! TTCACATTTAGATTCTTTTC+TGG + chr5_4:12811728-12811747 None:intergenic 25.0%
! GATAGATATTCAACTTGATA+TGG + chr5_4:12812571-12812590 None:intergenic 25.0%
! GATCATCATTATCTGTAATT+AGG + chr5_4:12812639-12812658 None:intergenic 25.0%
! GAAAAACACCATTCAATATT+AGG - chr5_4:12813100-12813119 Msa0838440:CDS 25.0%
! CTTTAAACTATCTTTCTGAA+AGG - chr5_4:12813257-12813276 Msa0838440:intron 25.0%
! GTTGTTTAAGTATGTAAATG+AGG + chr5_4:12813424-12813443 None:intergenic 25.0%
! ATTTACATACTTAAACAACC+CGG - chr5_4:12813425-12813444 Msa0838440:intron 25.0%
! TTGTTAAGTTAGTTACAAGT+TGG - chr5_4:12813756-12813775 Msa0838440:intron 25.0%
!! GAGCATGAAATATAACTTTT+TGG - chr5_4:12814030-12814049 Msa0838440:intron 25.0%
! AACCTTATAAATGATTCTTG+TGG - chr5_4:12814090-12814109 Msa0838440:intron 25.0%
! TACCACAAGAATCATTTATA+AGG + chr5_4:12814095-12814114 None:intergenic 25.0%
! TGTTAACAATGTTCTTTGTT+TGG - chr5_4:12814127-12814146 Msa0838440:intron 25.0%
!!! CTAAAAAATTTGCTAAAAGC+AGG + chr5_4:12814633-12814652 None:intergenic 25.0%
!! TATACCACATAATTTGTCTT+TGG - chr5_4:12814812-12814831 Msa0838440:five_prime_UTR 25.0%
! CGTAGTTATGTTTTATATGC+GGG + chr5_4:12810422-12810441 None:intergenic 30.0%
CTCATCATATTCATTCATCA+TGG - chr5_4:12810523-12810542 Msa0838440:three_prime_UTR 30.0%
! TAAAGAATTATGGGTTTGGT+AGG + chr5_4:12810564-12810583 None:intergenic 30.0%
ACTATCCAAACAAACTAATC+TGG + chr5_4:12810856-12810875 None:intergenic 30.0%
TAAAGTTCATAGAATCACAC+GGG - chr5_4:12810998-12811017 Msa0838440:intron 30.0%
AATTGCTATGTTTGAACACT+TGG - chr5_4:12811570-12811589 Msa0838440:intron 30.0%
TTGAAAATCACACACACAAA+TGG + chr5_4:12811612-12811631 None:intergenic 30.0%
! CATTTAGATTCTTTTCTGGA+AGG + chr5_4:12811724-12811743 None:intergenic 30.0%
!!! TCTTTTCATTTTTTGGGTCA+TGG - chr5_4:12811897-12811916 Msa0838440:CDS 30.0%
ATCAAGAATGCACAACAAAA+AGG + chr5_4:12811995-12812014 None:intergenic 30.0%
!! TCATTGCTTATTTTTCCTCT+TGG - chr5_4:12812051-12812070 Msa0838440:intron 30.0%
AAACTGAAATACAAACCAAG+AGG + chr5_4:12812069-12812088 None:intergenic 30.0%
TATCTTGTTGCATTAGATAC+TGG - chr5_4:12812129-12812148 Msa0838440:intron 30.0%
ATCTTGTTGCATTAGATACT+GGG - chr5_4:12812130-12812149 Msa0838440:intron 30.0%
!!! TTTTTTTTGGCACACAACAA+AGG + chr5_4:12812337-12812356 None:intergenic 30.0%
TCAGAAAATACTTCAACTAC+TGG - chr5_4:12812589-12812608 Msa0838440:intron 30.0%
!! CTAACCCACTAATTACTTTT+GGG - chr5_4:12812671-12812690 Msa0838440:CDS 30.0%
GTTACCCAAAAGTAATTAGT+GGG + chr5_4:12812678-12812697 None:intergenic 30.0%
AGTTACCCAAAAGTAATTAG+TGG + chr5_4:12812679-12812698 None:intergenic 30.0%
!!! TTTTCTGGACTTGCTTTTTT+TGG - chr5_4:12812841-12812860 Msa0838440:intron 30.0%
! TATTGAATGGTGTTTTTCCT+TGG + chr5_4:12813098-12813117 None:intergenic 30.0%
!!! CATTTATGTTTTTAGCAGCT+TGG - chr5_4:12813167-12813186 Msa0838440:CDS 30.0%
!! TAGACCTTTGAGGTTAATTT+GGG + chr5_4:12813236-12813255 None:intergenic 30.0%
!! ATAGACCTTTGAGGTTAATT+TGG + chr5_4:12813237-12813256 None:intergenic 30.0%
AGTTTAAAGATAGACCTTTG+AGG + chr5_4:12813246-12813265 None:intergenic 30.0%
TTCAATGCAATATTCGATAC+TGG - chr5_4:12813396-12813415 Msa0838440:intron 30.0%
!! TGAGTAATTTGCTTATAAGC+CGG + chr5_4:12813447-12813466 None:intergenic 30.0%
TAATAAGAACTCAAGTGGAA+TGG + chr5_4:12813524-12813543 None:intergenic 30.0%
GAATCAAACTGCAAAAACAA+TGG + chr5_4:12813557-12813576 None:intergenic 30.0%
TTCATCGTCAAGTTAACATT+GGG + chr5_4:12813957-12813976 None:intergenic 30.0%
TTTCATCGTCAAGTTAACAT+TGG + chr5_4:12813958-12813977 None:intergenic 30.0%
! AATGTTAACTTGACGATGAA+AGG - chr5_4:12813957-12813976 Msa0838440:intron 30.0%
!! TGGAGACAATTATTTTGTCA+TGG - chr5_4:12813980-12813999 Msa0838440:intron 30.0%
AGCAACAATGTGAATATCAT+TGG - chr5_4:12814161-12814180 Msa0838440:intron 30.0%
TTCTTAAATGAGTGACTAGA+TGG + chr5_4:12814577-12814596 None:intergenic 30.0%
GAATCCAAAGACAAATTATG+TGG + chr5_4:12814819-12814838 None:intergenic 30.0%
! GTGAGAGATTATAGTATTGA+CGG + chr5_4:12814890-12814909 None:intergenic 30.0%
TCGTGAATACTATGTTGCTA+TGG - chr5_4:12810736-12810755 Msa0838440:CDS 35.0%
AAACAAACTAATCTGGTACG+TGG + chr5_4:12810849-12810868 None:intergenic 35.0%
!! ACGTACCAGATTAGTTTGTT+TGG - chr5_4:12810848-12810867 Msa0838440:intron 35.0%
CAACCACATATGTTTGTGTT+TGG - chr5_4:12810967-12810986 Msa0838440:CDS 35.0%
GTACCAAACACAAACATATG+TGG + chr5_4:12810973-12810992 None:intergenic 35.0%
!! CATTTTTGCTGATTGAGCTA+AGG + chr5_4:12811546-12811565 None:intergenic 35.0%
AAAATCACACACACAAATGG+AGG + chr5_4:12811609-12811628 None:intergenic 35.0%
! TTTGTTGTGCATTCTTGATG+TGG - chr5_4:12811996-12812015 Msa0838440:intron 35.0%
!! CATTTTGCCAATGTTTCTGT+TGG - chr5_4:12812090-12812109 Msa0838440:intron 35.0%
CACATTTGGTACAATTGCAA+GGG + chr5_4:12812173-12812192 None:intergenic 35.0%
ACACATTTGGTACAATTGCA+AGG + chr5_4:12812174-12812193 None:intergenic 35.0%
AATTGTACCAAATGTGTCCA+TGG - chr5_4:12812177-12812196 Msa0838440:CDS 35.0%
CAAAACTATACTGCAGAGAT+TGG - chr5_4:12812264-12812283 Msa0838440:CDS 35.0%
ACATCTTAATACCCCTACTT+AGG + chr5_4:12812306-12812325 None:intergenic 35.0%
!! AAGTAGGGGTATTAAGATGT+CGG - chr5_4:12812306-12812325 Msa0838440:CDS 35.0%
!! TACTTCAACTACTGGTTTCT+TGG - chr5_4:12812597-12812616 Msa0838440:intron 35.0%
! GCTAACCCACTAATTACTTT+TGG - chr5_4:12812670-12812689 Msa0838440:CDS 35.0%
TTCCTCGCTAAGTTTAGTAA+TGG - chr5_4:12812725-12812744 Msa0838440:CDS 35.0%
TTCCATTACTAAACTTAGCG+AGG + chr5_4:12812730-12812749 None:intergenic 35.0%
ATTGAATGTGTTGCAGTTGT+GGG - chr5_4:12812887-12812906 Msa0838440:intron 35.0%
CAAGTATCTTAGCCAAACAA+GGG - chr5_4:12812989-12813008 Msa0838440:intron 35.0%
! ATTTGAAGTTAGCCCTTGTT+TGG + chr5_4:12813004-12813023 None:intergenic 35.0%
!!! TCAATGTGTTTTGGTGATGA+TGG - chr5_4:12813030-12813049 Msa0838440:intron 35.0%
!!! TGTTTTGGTGATGATGGTTT+GGG - chr5_4:12813036-12813055 Msa0838440:intron 35.0%
GTTTGGGAAGAATCACATTT+GGG - chr5_4:12813052-12813071 Msa0838440:intron 35.0%
TTTGGGAAGAATCACATTTG+GGG - chr5_4:12813053-12813072 Msa0838440:intron 35.0%
TGGGGATAATAATAGTAGCT+TGG - chr5_4:12813071-12813090 Msa0838440:CDS 35.0%
AATAATAGTAGCTTGGACCA+AGG - chr5_4:12813078-12813097 Msa0838440:CDS 35.0%
TAGCAGCTTGGATAATGTTA+AGG - chr5_4:12813179-12813198 Msa0838440:CDS 35.0%
ATTTCCTCCCACGATAATTT+GGG + chr5_4:12813361-12813380 None:intergenic 35.0%
AATTTCCTCCCACGATAATT+TGG + chr5_4:12813362-12813381 None:intergenic 35.0%
!! GAGTAATTTGCTTATAAGCC+GGG + chr5_4:12813446-12813465 None:intergenic 35.0%
AAGTCATAGCAGTACTCAAA+GGG + chr5_4:12813626-12813645 None:intergenic 35.0%
TAAGTCATAGCAGTACTCAA+AGG + chr5_4:12813627-12813646 None:intergenic 35.0%
! TTGAGTACTGCTATGACTTA+AGG - chr5_4:12813627-12813646 Msa0838440:intron 35.0%
TATATCCAACAATCAGTGCT+TGG + chr5_4:12813708-12813727 None:intergenic 35.0%
! CACTGATTGTTGGATATAGT+TGG - chr5_4:12813710-12813729 Msa0838440:intron 35.0%
ATTCTTGTGGTATTCATTCC+AGG - chr5_4:12814103-12814122 Msa0838440:intron 35.0%
TTCTTGTGGTATTCATTCCA+GGG - chr5_4:12814104-12814123 Msa0838440:intron 35.0%
AAAGAACATTGTTAACACCC+TGG + chr5_4:12814124-12814143 None:intergenic 35.0%
ATACAATCTACCCCTTCAAA+TGG - chr5_4:12814538-12814557 Msa0838440:CDS 35.0%
AGAACCTGCATTAGCATTTA+CGG - chr5_4:12814597-12814616 Msa0838440:CDS 35.0%
TATTACACGCATCTTGACTC+TGG - chr5_4:12810379-12810398 Msa0838440:three_prime_UTR 40.0%
!! TGCCATGGTTCTAGTTCATT+CGG - chr5_4:12810638-12810657 Msa0838440:CDS 40.0%
AACCGAATGAACTAGAACCA+TGG + chr5_4:12810643-12810662 None:intergenic 40.0%
ATACCCAAAATACCCTTCAC+CGG + chr5_4:12810692-12810711 None:intergenic 40.0%
TATTGAGAACGTTCCTGACA+AGG - chr5_4:12810709-12810728 Msa0838440:CDS 40.0%
ATTGAGAACGTTCCTGACAA+GGG - chr5_4:12810710-12810729 Msa0838440:CDS 40.0%
TGGTGTTCCAACAGAAACAT+TGG + chr5_4:12812100-12812119 None:intergenic 40.0%
CTCTATACCATGGACACATT+TGG + chr5_4:12812187-12812206 None:intergenic 40.0%
!! CTGTTGATAGCTCTATACCA+TGG + chr5_4:12812197-12812216 None:intergenic 40.0%
CATGGTATAGAGCTATCAAC+AGG - chr5_4:12812195-12812214 Msa0838440:CDS 40.0%
TATAGAGCTATCAACAGGAC+AGG - chr5_4:12812200-12812219 Msa0838440:CDS 40.0%
!! AACTACTGGTTTCTTGGTAG+AGG - chr5_4:12812603-12812622 Msa0838440:CDS 40.0%
CATTGAATGTGTTGCAGTTG+TGG - chr5_4:12812886-12812905 Msa0838440:intron 40.0%
! CCTTGTTTGGCTAAGATACT+TGG + chr5_4:12812991-12813010 None:intergenic 40.0%
CCAAGTATCTTAGCCAAACA+AGG - chr5_4:12812988-12813007 Msa0838440:intron 40.0%
!!! GTGTTTTGGTGATGATGGTT+TGG - chr5_4:12813035-12813054 Msa0838440:intron 40.0%
GGTTTGGGAAGAATCACATT+TGG - chr5_4:12813051-12813070 Msa0838440:intron 40.0%
ACAATAACCACTTACTGCGA+CGG + chr5_4:12813126-12813145 None:intergenic 40.0%
ACTGTCACCCAAATTATCGT+GGG - chr5_4:12813351-12813370 Msa0838440:intron 40.0%
!! AATCACCAAGCACTGATTGT+TGG - chr5_4:12813700-12813719 Msa0838440:intron 40.0%
CAGCTGATACACTTTACAGT+TGG + chr5_4:12813880-12813899 None:intergenic 40.0%
CATTGGGAACTTCAATTGTC+TGG + chr5_4:12813941-12813960 None:intergenic 40.0%
! GTTAACTTGACGATGAAAGG+TGG - chr5_4:12813960-12813979 Msa0838440:intron 40.0%
ATGGACCCGATAATAACAAG+TGG - chr5_4:12813999-12814018 Msa0838440:intron 40.0%
!! ACCCTGCCACTTGTTATTAT+CGG + chr5_4:12814008-12814027 None:intergenic 40.0%
CATGCAGAAAACTTCATGAC+TGG - chr5_4:12814280-12814299 Msa0838440:intron 40.0%
! AAAACTTCATGACTGGCTAC+CGG - chr5_4:12814287-12814306 Msa0838440:intron 40.0%
TCTCGCGATCAAAAACTATC+CGG + chr5_4:12814309-12814328 None:intergenic 40.0%
GAAGGGGTAGATTGTATTTC+AGG + chr5_4:12814535-12814554 None:intergenic 40.0%
! TCTTTGAGGACCATTTGAAG+GGG + chr5_4:12814551-12814570 None:intergenic 40.0%
! GTCTTTGAGGACCATTTGAA+GGG + chr5_4:12814552-12814571 None:intergenic 40.0%
! AGTCTTTGAGGACCATTTGA+AGG + chr5_4:12814553-12814572 None:intergenic 40.0%
TGACTAGATGGAAGTCTTTG+AGG + chr5_4:12814565-12814584 None:intergenic 40.0%
TCACAATCACATAGGTGCCA+TGG - chr5_4:12810623-12810642 Msa0838440:exon 45.0%
TCGGTTTCGATATCCACCAT+CGG - chr5_4:12810657-12810676 Msa0838440:CDS 45.0%
!!! TGATCCGGTGAAGGGTATTT+TGG - chr5_4:12810685-12810704 Msa0838440:CDS 45.0%
!!! GATCCGGTGAAGGGTATTTT+GGG - chr5_4:12810686-12810705 Msa0838440:CDS 45.0%
TATTCACGACTTCCCTTGTC+AGG + chr5_4:12810725-12810744 None:intergenic 45.0%
!! ATCTGGTACGTGGTGTTATC+TGG + chr5_4:12810839-12810858 None:intergenic 45.0%
GCTGATTGAGCTAAGGCTTA+TGG + chr5_4:12811539-12811558 None:intergenic 45.0%
CACACACAAATGGAGGAGTA+GGG + chr5_4:12811602-12811621 None:intergenic 45.0%
ACACACACAAATGGAGGAGT+AGG + chr5_4:12811603-12811622 None:intergenic 45.0%
GCAACAAGATACGATGAAGC+TGG + chr5_4:12812120-12812139 None:intergenic 45.0%
!! ATACTGGGAGTGACTTGTTC+TGG - chr5_4:12812145-12812164 Msa0838440:intron 45.0%
GCAAGCTTGTGACCTAAGTA+GGG - chr5_4:12812291-12812310 Msa0838440:CDS 45.0%
CAAGCTTGTGACCTAAGTAG+GGG - chr5_4:12812292-12812311 Msa0838440:CDS 45.0%
!! AGGGGTATTAAGATGTCGGA+AGG - chr5_4:12812310-12812329 Msa0838440:CDS 45.0%
! GCAGGCAACATTTTTGCTAG+TGG + chr5_4:12812491-12812510 None:intergenic 45.0%
CTCACATAAGCTGCTATTGC+AGG + chr5_4:12812509-12812528 None:intergenic 45.0%
ACACAGTGCTCTTCTTCATC+TGG - chr5_4:12812535-12812554 Msa0838440:intron 45.0%
AGTTGTGGGCAAGTTCAAAC+AGG - chr5_4:12812901-12812920 Msa0838440:intron 45.0%
GTTGTGGGCAAGTTCAAACA+GGG - chr5_4:12812902-12812921 Msa0838440:intron 45.0%
TTGTGGGCAAGTTCAAACAG+GGG - chr5_4:12812903-12812922 Msa0838440:intron 45.0%
! AGTTCAAACAGGGGCTTTTC+TGG - chr5_4:12812912-12812931 Msa0838440:intron 45.0%
! AAACAGGGGCTTTTCTGGAT+GGG - chr5_4:12812917-12812936 Msa0838440:intron 45.0%
CCTAGTCCAAACAGACCATT+TGG + chr5_4:12812949-12812968 None:intergenic 45.0%
CCAAATGGTCTGTTTGGACT+AGG - chr5_4:12812946-12812965 Msa0838440:intron 45.0%
TGCGACGGCCTAATATTGAA+TGG + chr5_4:12813111-12813130 None:intergenic 45.0%
!! CCTTTGAGGTTAATTTGGGC+AGG + chr5_4:12813232-12813251 None:intergenic 45.0%
CCTGCCCAAATTAACCTCAA+AGG - chr5_4:12813229-12813248 Msa0838440:intron 45.0%
CACTGTCACCCAAATTATCG+TGG - chr5_4:12813350-12813369 Msa0838440:intron 45.0%
TGCATTGAACTCCAGATCAG+CGG + chr5_4:12813385-12813404 None:intergenic 45.0%
ACCCGATAATAACAAGTGGC+AGG - chr5_4:12814003-12814022 Msa0838440:intron 45.0%
!! CCCTGCCACTTGTTATTATC+GGG + chr5_4:12814007-12814026 None:intergenic 45.0%
CCCGATAATAACAAGTGGCA+GGG - chr5_4:12814004-12814023 Msa0838440:intron 45.0%
! GAACATGACTCTAGGTTGGA+AGG - chr5_4:12814327-12814346 Msa0838440:intron 45.0%
ACCTGCATTAGCATTTACGG+TGG - chr5_4:12814600-12814619 Msa0838440:CDS 45.0%
!!! AATTTTAAACTAATAAAAAA+GGG + chr5_4:12811797-12811816 None:intergenic 5.0%
!!! AAATTTTAAACTAATAAAAA+AGG + chr5_4:12811798-12811817 None:intergenic 5.0%
!!! AAAATTCATTTTTTTTTTAT+TGG - chr5_4:12811843-12811862 Msa0838440:CDS 5.0%
!!! AAATTCATTTTTTTTTTATT+GGG - chr5_4:12811844-12811863 Msa0838440:CDS 5.0%
!!! CCACCATCGGTTTTCTGATC+CGG - chr5_4:12810670-12810689 Msa0838440:CDS 50.0%
TCACCGGATCAGAAAACCGA+TGG + chr5_4:12810676-12810695 None:intergenic 50.0%
! TCGGTTTTCTGATCCGGTGA+AGG - chr5_4:12810676-12810695 Msa0838440:CDS 50.0%
! CGGTTTTCTGATCCGGTGAA+GGG - chr5_4:12810677-12810696 Msa0838440:CDS 50.0%
CCGAAAAACACGGTCTCTGT+GGG + chr5_4:12810762-12810781 None:intergenic 50.0%
! CCCACAGAGACCGTGTTTTT+CGG - chr5_4:12810759-12810778 Msa0838440:CDS 50.0%
! CCACAGAGACCGTGTTTTTC+GGG - chr5_4:12810760-12810779 Msa0838440:CDS 50.0%
! CACAGAGACCGTGTTTTTCG+GGG - chr5_4:12810761-12810780 Msa0838440:CDS 50.0%
CGCAAGCTTGTGACCTAAGT+AGG - chr5_4:12812290-12812309 Msa0838440:CDS 50.0%
CAGTGCTCTTCTTCATCTGG+TGG - chr5_4:12812538-12812557 Msa0838440:intron 50.0%
! CAAACAGGGGCTTTTCTGGA+TGG - chr5_4:12812916-12812935 Msa0838440:intron 50.0%
! AACAGGGGCTTTTCTGGATG+GGG - chr5_4:12812918-12812937 Msa0838440:intron 50.0%
GCAGCTCCAAATGGTCTGTT+TGG - chr5_4:12812940-12812959 Msa0838440:intron 50.0%
TATTAGGCCGTCGCAGTAAG+TGG - chr5_4:12813116-12813135 Msa0838440:CDS 50.0%
GTCACCCAAATTATCGTGGG+AGG - chr5_4:12813354-12813373 Msa0838440:intron 50.0%
GATCGCGAGAACATGACTCT+AGG - chr5_4:12814319-12814338 Msa0838440:intron 50.0%
GCGAGAACATGACTCTAGGT+TGG - chr5_4:12814323-12814342 Msa0838440:intron 50.0%
GCCACCGTAAATGCTAATGC+AGG + chr5_4:12814604-12814623 None:intergenic 50.0%
CCGGATCAGAAAACCGATGG+TGG + chr5_4:12810673-12810692 None:intergenic 55.0%
CCCGAAAAACACGGTCTCTG+TGG + chr5_4:12810763-12810782 None:intergenic 55.0%
!!! GAGACCGTGTTTTTCGGGGT+CGG - chr5_4:12810765-12810784 Msa0838440:CDS 55.0%
GGGAGGAAATTCCGCTGATC+TGG - chr5_4:12813371-12813390 Msa0838440:intron 55.0%
CATAGCAGGAGACACAGCTG+GGG + chr5_4:12814503-12814522 None:intergenic 55.0%
CCATAGCAGGAGACACAGCT+GGG + chr5_4:12814504-12814523 None:intergenic 55.0%
AGCTGTGTCTCCTGCTATGG+CGG - chr5_4:12814504-12814523 Msa0838440:CDS 55.0%
TCAGGATTCACCGCCATAGC+AGG + chr5_4:12814517-12814536 None:intergenic 55.0%
GACGCCGACCCCGAAAAACA+CGG + chr5_4:12810772-12810791 None:intergenic 60.0%
CTGGATGGGGCAGCTCCAAA+TGG - chr5_4:12812931-12812950 Msa0838440:intron 60.0%
CCCAGCTGTGTCTCCTGCTA+TGG - chr5_4:12814501-12814520 Msa0838440:CDS 60.0%
GCCATAGCAGGAGACACAGC+TGG + chr5_4:12814505-12814524 None:intergenic 60.0%
GGGGCGTGCGATCGGTTAAC+AGG + chr5_4:12814484-12814503 None:intergenic 65.0%
ACACAGCTGGGGCGTGCGAT+CGG + chr5_4:12814492-12814511 None:intergenic 65.0%
CGGGGTCGGCGTCTTGCTGA+CGG - chr5_4:12810779-12810798 Msa0838440:CDS 70.0%
GGTCGGCGTCTTGCTGACGG+TGG - chr5_4:12810782-12810801 Msa0838440:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 12810369 12814923 12810369 ID=Msa0838440;Name=Msa0838440
chr5_4 mRNA 12810369 12814923 12810369 ID=Msa0838440-mRNA-1;Parent=Msa0838440;Name=Msa0838440-mRNA-1;_AED=0.11;_eAED=0.11;_QI=173|1|1|1|1|1|10|266|527
chr5_4 exon 12810369 12810837 12810369 ID=Msa0838440-mRNA-1:exon:5705;Parent=Msa0838440-mRNA-1
chr5_4 exon 12810934 12811005 12810934 ID=Msa0838440-mRNA-1:exon:5704;Parent=Msa0838440-mRNA-1
chr5_4 exon 12811107 12811167 12811107 ID=Msa0838440-mRNA-1:exon:5703;Parent=Msa0838440-mRNA-1
chr5_4 exon 12811267 12811360 12811267 ID=Msa0838440-mRNA-1:exon:5702;Parent=Msa0838440-mRNA-1
chr5_4 exon 12811644 12811723 12811644 ID=Msa0838440-mRNA-1:exon:5701;Parent=Msa0838440-mRNA-1
chr5_4 exon 12811822 12811957 12811822 ID=Msa0838440-mRNA-1:exon:5700;Parent=Msa0838440-mRNA-1
chr5_4 exon 12812162 12812389 12812162 ID=Msa0838440-mRNA-1:exon:5699;Parent=Msa0838440-mRNA-1
chr5_4 exon 12812600 12812841 12812600 ID=Msa0838440-mRNA-1:exon:5698;Parent=Msa0838440-mRNA-1
chr5_4 exon 12813071 12813206 12813071 ID=Msa0838440-mRNA-1:exon:5697;Parent=Msa0838440-mRNA-1
chr5_4 exon 12814419 12814923 12814419 ID=Msa0838440-mRNA-1:exon:5696;Parent=Msa0838440-mRNA-1
chr5_4 five_prime_UTR 12814751 12814923 12814751 ID=Msa0838440-mRNA-1:five_prime_utr;Parent=Msa0838440-mRNA-1
chr5_4 CDS 12814419 12814750 12814419 ID=Msa0838440-mRNA-1:cds;Parent=Msa0838440-mRNA-1
chr5_4 CDS 12813071 12813206 12813071 ID=Msa0838440-mRNA-1:cds;Parent=Msa0838440-mRNA-1
chr5_4 CDS 12812600 12812841 12812600 ID=Msa0838440-mRNA-1:cds;Parent=Msa0838440-mRNA-1
chr5_4 CDS 12812162 12812389 12812162 ID=Msa0838440-mRNA-1:cds;Parent=Msa0838440-mRNA-1
chr5_4 CDS 12811822 12811957 12811822 ID=Msa0838440-mRNA-1:cds;Parent=Msa0838440-mRNA-1
chr5_4 CDS 12811644 12811723 12811644 ID=Msa0838440-mRNA-1:cds;Parent=Msa0838440-mRNA-1
chr5_4 CDS 12811267 12811360 12811267 ID=Msa0838440-mRNA-1:cds;Parent=Msa0838440-mRNA-1
chr5_4 CDS 12811107 12811167 12811107 ID=Msa0838440-mRNA-1:cds;Parent=Msa0838440-mRNA-1
chr5_4 CDS 12810934 12811005 12810934 ID=Msa0838440-mRNA-1:cds;Parent=Msa0838440-mRNA-1
chr5_4 CDS 12810635 12810837 12810635 ID=Msa0838440-mRNA-1:cds;Parent=Msa0838440-mRNA-1
chr5_4 three_prime_UTR 12810369 12810634 12810369 ID=Msa0838440-mRNA-1:three_prime_utr;Parent=Msa0838440-mRNA-1
Gene Sequence

>Msa0838440

ATGGCTTTTCTTTCTATCTCCTACCAAACCCATAATTCTTTATATGTTTCAGTGTTATTAACGTTAATACTATGTTTAATTTCACAATCACATAGGTGCCATGGTTCTAGTTCATTCGGTTTCGATATCCACCATCGGTTTTCTGATCCGGTGAAGGGTATTTTGGGTATTGAGAACGTTCCTGACAAGGGAAGTCGTGAATACTATGTTGCTATGGCCCACAGAGACCGTGTTTTTCGGGGTCGGCGTCTTGCTGACGGTGGTGATGTTGATCAGAAGCTTCTTACGTTTTCTCCAGATAACACCACGTACCAGATTAGTTTGTTTGGATATTTGCATTTTGCCAATGTTTCTGTTGGAACACCAGCTTCATCGTATCTTGTTGCATTAGATACTGGGAGTGACTTGTTCTGGCTCCCTTGCAATTGTACCAAATGTGTCCATGGTATAGAGCTATCAACAGGACAGAAAATTGCTTTTAATATCTATGATAACAAAGAATCATCCACTAGCAAAAATGTTGCCTGCAATAGCAGCTTATGTGAGCAGAAGACACAGTGCTCTTCTTCATCTGGTGGCACTTGTCCATATCAAGTTGAATATCTATCAGAAAATACTTCAACTACTGGTTTCTTGGTAGAGGATGTGTTGCACCTAATTACAGATAATGATGATCAAACTCAACATGCTAACCCACTAATTACTTTTGGTTGTGGGCAAGTTCAAACAGGGGCTTTTCTGGATGGGGCAGCTCCAAATGGTCTGTTTGGACTAGGAATGAGTGATGTATCTGTTCCAAGTATCTTAGCCAAACAAGGGCTAACTTCAAATTCTTTTTCAATGTGTTTTGGTGATGATGGTTTGGGAAGAATCACATTTGGGGATAATAATAGTAGCTTGGACCAAGGAAAAACACCATTCAATATTAGGCCGTCGCATTCAACTTACAACATCACTGTCACCCAAATTATCGTGGGAGGAAATTCCGCTGATCTGGAGTTCAATGCAATATTCGATACTGGTACCTCATTTACATACTTAAACAACCCGGCTTATAAGCAAATTACTCAAAGTTTTGATTCAAAAATTAAACTACAAAGGCATTCATTTTCTGATTCTGATGATCTTCCCTTTGAGTACTGCTATGACTTAAGAACAAACCAGACAATTGAAGTTCCCAATGTTAACTTGACGATGAAAGGTGGAGACAATTATTTTGTCATGGACCCGATAATAACAAGTGGCAGGGGTGTTAACAATGTTCTTTGTTTGGCTGTTTTGAAAAGCAACAATGTGAATATCATTGGACAAAACTTCATGACTGGCTACCGGATAGTTTTTGATCGCGAGAACATGACTCTAGGTTGGAAGGAATCTAACTGTTATGATGATGAACTCTCGAGTTTACCTGTTAACCGATCGCACGCCCCAGCTGTGTCTCCTGCTATGGCGGTGAATCCTGAAATACAATCTACCCCTTCAAATGGTCCTCAAAGACTTCCATCTAGTCACTCATTTAAGAAAGAACCTGCATTAGCATTTACGGTGGCAATTATCCTGCTTTTAGCAAATTTTTTAGCATAG
Protein sequence

>Msa0838440

MAFLSISYQTHNSLYVSVLLTLILCLISQSHRCHGSSSFGFDIHHRFSDPVKGILGIENVPDKGSREYYVAMAHRDRVFRGRRLADGGDVDQKLLTFSPDNTTYQISLFGYLHFANVSVGTPASSYLVALDTGSDLFWLPCNCTKCVHGIELSTGQKIAFNIYDNKESSTSKNVACNSSLCEQKTQCSSSSGGTCPYQVEYLSENTSTTGFLVEDVLHLITDNDDQTQHANPLITFGCGQVQTGAFLDGAAPNGLFGLGMSDVSVPSILAKQGLTSNSFSMCFGDDGLGRITFGDNNSSLDQGKTPFNIRPSHSTYNITVTQIIVGGNSADLEFNAIFDTGTSFTYLNNPAYKQITQSFDSKIKLQRHSFSDSDDLPFEYCYDLRTNQTIEVPNVNLTMKGGDNYFVMDPIITSGRGVNNVLCLAVLKSNNVNIIGQNFMTGYRIVFDRENMTLGWKESNCYDDELSSLPVNRSHAPAVSPAMAVNPEIQSTPSNGPQRLPSSHSFKKEPALAFTVAIILLLANFLA*